BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9VII-10R
(542 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|346685|pir||JC1349 developmentally-regulated GTP-binding prot... 78 7e-26
gi|4127988|emb|CAA06775| (AJ005940) GTP-binding protein [Homo sa... 78 7e-26
gi|416914|sp|P32233|DRG_MOUSE DEVELOPMENTALLY REGULATED GTP-BIND... 78 7e-26
gi|416555|sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422... 78 3e-25
gi|1169421|sp|P43690|DRG_XENLA DEVELOPMENTALLY REGULATED GTP-BIN... 75 3e-25
gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN P... 82 3e-22
gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis deve... 80 5e-20
gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana] >... 68 6e-19
gi|2345148|gb|AAB67829| (AF014821) developmentally regulated GTP... 66 3e-17
gi|4557537|oth|NP_001379|PDRG2 developmentally regulated GTP-bin... 56 8e-15
gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family [Met... 55 1e-14
gi|1723727|sp|P53295|YG3Y_YEAST HYPOTHETICAL 41.0 KD PROTEIN IN ... 53 3e-14
gi|465736|sp|P34280|YKK3_CAEEL HYPOTHETICAL 64.3 KD GTP-BINDING ... 55 5e-14
gi|2950451|emb|CAA17801| (AL022071) gtp-binding protein 1 [Schiz... 57 9e-14
gi|2654192 (AF035177) GTP-binding protein [Oncorhynchus tshawytsha] 54 1e-13
gi|417095|sp|P32235|GTP1_SCHPO GTP-BINDING PROTEIN 1 >gi|419815|... 56 1e-13
gi|2648391 (AE000956) GTP-binding protein [Archaeoglobus fulgidus] 55 2e-11
gi|2120160|pir||E64465 GTP-binding protein - Methanococcus janna... 48 6e-11
gi|3136028|emb|CAA19048| (AL023587) hypothetical protein [Schizo... 57 3e-09
gi|3258101|dbj|BAA30784| (AP000006) 387aa long hypothetical deve... 42 2e-08
gi|141353|sp|P17103|YRB1_HALCU HYPOTHETICAL 40 KD GTP-BINDING PR... 39 1e-07
gi|1698846 (U72850) GTP-binding protein [Thermoplasma acidophilum] 45 2e-05
gi|2494088|sp|Q57695|DAPA_METJA DIHYDRODIPICOLINATE SYNTHASE (DH... 34 0.77
gi|4155783 (AE001545) NADH oxidoreductase I [Helicobacter pylori... 31 5.1
gi|2735936 (AF015193) NADH dehydrogenase subunit 4 [Onchocerca v... 31 5.1
gi|2314437|gb|AAD08316| (AE000631) NADH-ubiquinone oxidoreductas... 31 6.7
>gi|346685|pir||JC1349 developmentally-regulated GTP-binding protein - mouse
Length = 367
Score = 78.4 bits (190), Expect(2) = 7e-26
Identities = 34/74 (45%), Positives = 49/74 (65%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + TV+ C
Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCM 323
Query: 183 IIHKSIIEKXKYAL 224
IHK++I++ KYAL
Sbjct: 324 KIHKNLIKEFKYAL 337
Score = 59.7 bits (142), Expect(2) = 7e-26
Identities = 26/30 (86%), Positives = 27/30 (89%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG SVKHNPQKVGKDH L DEDV+QIVKK
Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>gi|4127988|emb|CAA06775| (AJ005940) GTP-binding protein [Homo sapiens] >gi|4218945
(AF078103) developmentally regulated GTP-binding protein
[Homo sapiens]
Length = 367
Score = 78.4 bits (190), Expect(2) = 7e-26
Identities = 34/74 (45%), Positives = 49/74 (65%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + TV+ C
Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCM 323
Query: 183 IIHKSIIEKXKYAL 224
IHK++I++ KYAL
Sbjct: 324 KIHKNLIKEFKYAL 337
Score = 59.7 bits (142), Expect(2) = 7e-26
Identities = 26/30 (86%), Positives = 27/30 (89%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG SVKHNPQKVGKDH L DEDV+QIVKK
Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>gi|416914|sp|P32233|DRG_MOUSE DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG (NEDD3 PROTEIN)
>gi|220507|dbj|BAA01555| (D10715) GTP-binding protein
[Mus musculus]
Length = 367
Score = 78.4 bits (190), Expect(2) = 7e-26
Identities = 34/74 (45%), Positives = 49/74 (65%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + TV+ C
Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCM 323
Query: 183 IIHKSIIEKXKYAL 224
IHK++I++ KYAL
Sbjct: 324 KIHKNLIKEFKYAL 337
Score = 59.7 bits (142), Expect(2) = 7e-26
Identities = 26/30 (86%), Positives = 27/30 (89%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG SVKHNPQKVGKDH L DEDV+QIVKK
Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>gi|416555|sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422452|pir||S33467 GTP-binding
protein 128up - fruit fly (Drosophila melanogaster)
>gi|630861|pir||S42582 GTP-binding protein - fruit fly
(Drosophila melanogaster) >gi|311343|emb|CAA50701|
(X71866) GTP-binding protein [Drosophila melanogaster]
Length = 368
Score = 77.6 bits (188), Expect(2) = 3e-25
Identities = 34/74 (45%), Positives = 47/74 (62%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
IP+ VPI AH WN D LLE MW + L RIY KPKG P+V+ ++ +++ CN
Sbjct: 264 IPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVVLHNERTSIEDFCN 323
Query: 183 IIHKSIIEKXKYAL 224
+H+SI ++ KYAL
Sbjct: 324 KLHRSIAKEFKYAL 337
Score = 58.6 bits (139), Expect(2) = 3e-25
Identities = 26/31 (83%), Positives = 28/31 (89%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKKI 316
VWGSSVKH PQKVG +H LNDEDVVQIVKK+
Sbjct: 338 VWGSSVKHQPQKVGIEHVLNDEDVVQIVKKV 368
>gi|1169421|sp|P43690|DRG_XENLA DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG (XDRG)
>gi|2120159|pir||I51426 GTP-binding protein DRG -
African clawed frog >gi|433422|dbj|BAA02978| (D13865)
GTP-binding protein DRG [Xenopus laevis]
Length = 367
Score = 74.5 bits (180), Expect(2) = 3e-25
Identities = 32/74 (43%), Positives = 46/74 (61%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + C
Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLQLVRIYTKPKGQLPDYTSPVVLPCSHTAAEDFCT 323
Query: 183 IIHKSIIEKXKYAL 224
IHK++I++ KYAL
Sbjct: 324 KIHKNLIKEFKYAL 337
Score = 61.7 bits (147), Expect(2) = 3e-25
Identities = 27/30 (90%), Positives = 28/30 (93%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWGSSVKHNPQKVGKDH L DEDV+QIVKK
Sbjct: 338 VWGSSVKHNPQKVGKDHVLEDEDVIQIVKK 367
>gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN PYK1-SNC1 INTERGENIC REGION
>gi|1077475|pir||S51983 FUN11 protein - yeast
(Saccharomyces cerevisiae) >gi|595548 (U12980) Fun11p
[Saccharomyces cerevisiae]
Length = 369
Score = 81.5 bits (198), Expect(2) = 3e-22
Identities = 36/76 (47%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
IPN+VPI + ++WN+D+LL+ MW+ + L+RIY KPKG +P+V++ D+ +VK CN
Sbjct: 266 IPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCN 325
Query: 183 IIHKSIIEKXKYAL-YG 230
IHKS+++ + AL YG
Sbjct: 326 QIHKSLVDDFRNALVYG 342
Score = 44.5 bits (103), Expect(2) = 3e-22
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
V+GSSVKH PQ VG H L DEDVV I+KK
Sbjct: 340 VYGSSVKHQPQYVGLSHILEDEDVVTILKK 369
>gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis developing GTP-binding protein
DRG, SWISS-PROT Accession Number P43690
[Schizosaccharomyces pombe]
Length = 366
Score = 79.6 bits (193), Expect(2) = 5e-20
Identities = 32/73 (43%), Positives = 51/73 (69%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
IPN+VPIC ++ WNID+L E+MW+ + L+R+Y +P+G EP++++ +TV+ CN
Sbjct: 263 IPNAVPICGNRGWNIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCN 322
Query: 183 IIHKSIIEKXKYA 221
IH SI + K+A
Sbjct: 323 NIHSSIKSQFKHA 335
Score = 38.7 bits (88), Expect(2) = 5e-20
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 221 FVWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
+VWG SV + +VG H L DEDVV IVKK
Sbjct: 336 YVWGKSVPYPGMRVGLSHVLLDEDVVTIVKK 366
>gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana]
>gi|2345150|gb|AAB67830| (AF014822) developmentally
regulated GTP binding protein [Arabidopsis thaliana]
Length = 399
Score = 67.9 bits (163), Expect(2) = 6e-19
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKN--TVKHLC 179
PNS+ I + + N+D+LL MW+ M L+R+Y KP+G +EP V+ D+ TV+ C
Sbjct: 263 PNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQPDFDEPFVLSSDRGGCTVEDFC 322
Query: 180 NIIHKSIIEKXKYAL 224
N +H+++++ KYAL
Sbjct: 323 NHVHRTLVKDMKYAL 337
Score = 46.9 bits (109), Expect(2) = 6e-19
Identities = 20/30 (66%), Positives = 22/30 (72%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG+S +HNPQ G L DEDVVQIVKK
Sbjct: 338 VWGTSTRHNPQNCGLSQHLEDEDVVQIVKK 367
>gi|2345148|gb|AAB67829| (AF014821) developmentally regulated GTP binding protein [Pisum
sativum]
Length = 399
Score = 66.3 bits (159), Expect(2) = 3e-17
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKN--TVKHLC 179
PNSV I + + N+D+LL MW+ M L+R+Y KP+G +P+V+ D+ +V+ C
Sbjct: 263 PNSVVISCNLKLNLDRLLSRMWDEMGLVRVYTKPQGQQPDFSDPVVLSADRGGCSVEDFC 322
Query: 180 NIIHKSIIEKXKYAL 224
N IH+S+++ KY L
Sbjct: 323 NHIHRSLVKDVKYVL 337
Score = 42.6 bits (98), Expect(2) = 3e-17
Identities = 19/30 (63%), Positives = 20/30 (66%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG +H PQ G H L DEDVVQIVKK
Sbjct: 338 VWGIMARHYPQHCGLSHVLRDEDVVQIVKK 367
>gi|4557537|oth|NP_001379|PDRG2 developmentally regulated GTP-binding protein 2
>gi|1706518|sp|P55039|DRG_HUMAN DEVELOPMENTALLY
REGULATED GTP-BINDING PROTEIN DRG
>gi|1082424|pir||A55014 GTP-binding protein - human
>gi|577779|emb|CAA56730| (X80754) GTP-binding protein
[Homo sapiens]
Length = 364
Score = 55.8 bits (132), Expect(2) = 8e-15
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185
PNSV I + N+D LLE +W + L IY K K G + D +I R +V+H+C+
Sbjct: 263 PNSVVISCGMKLNLDYLLEMLWEYLALTCIYTK-KRGQRPDFTDAIILRKGASVEHVCHR 321
Query: 186 IHKSIIEKXKYAL 224
IH+S+ + KYAL
Sbjct: 322 IHRSLASQFKYAL 334
Score = 44.9 bits (104), Expect(2) = 8e-15
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG+S K++PQ+VG H + EDV+QIVKK
Sbjct: 335 VWGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
>gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family [Methanobacterium
thermoautotrophicum]
Length = 380
Score = 55.4 bits (131), Expect(2) = 1e-14
Identities = 27/72 (37%), Positives = 47/72 (64%)
Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185
P ++ I A ++ NID+L E ++N + LIRIY KP+G +EP++I R+ +TV +C
Sbjct: 278 PEALFISADRDINIDELREEIFNRLGLIRIYLKPQGKKADYDEPLII-REGSTVGDVCQK 336
Query: 186 IHKSIIEKXKYA 221
+H+ + K ++A
Sbjct: 337 LHRDFVRKFRHA 348
Score = 44.9 bits (104), Expect(2) = 1e-14
Identities = 20/30 (66%), Positives = 25/30 (82%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWGSSVK + QKVG +H LNDEDV++I+ K
Sbjct: 350 VWGSSVKFDGQKVGLEHVLNDEDVLRIIIK 379
>gi|1723727|sp|P53295|YG3Y_YEAST HYPOTHETICAL 41.0 KD PROTEIN IN YIP1-CBP4 INTERGENIC REGION
>gi|2120158|pir||S64487 hypothetical protein YGR173w -
yeast (Saccharomyces cerevisiae)
>gi|1323306|emb|CAA97199| (Z72958) ORF YGR173w
[Saccharomyces cerevisiae]
Length = 368
Score = 53.5 bits (126), Expect(2) = 3e-14
Identities = 23/73 (31%), Positives = 44/73 (59%)
Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185
PN+V + + + ++E +W + L R+Y K +G + ++P+V+ R+ +T+ LC+
Sbjct: 267 PNTVVMSCEMDLGLQDVVEEIWYQLNLSRVYTKKRGVRPVFDDPLVV-RNNSTIGDLCHG 325
Query: 186 IHKSIIEKXKYAL 224
IH+ +K KYAL
Sbjct: 326 IHRDFKDKFKYAL 338
Score = 45.3 bits (105), Expect(2) = 3e-14
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWGSS KH+PQK G +H ++DEDVV + K
Sbjct: 339 VWGSSAKHSPQKCGLNHRIDDEDVVSLFAK 368
>gi|465736|sp|P34280|YKK3_CAEEL HYPOTHETICAL 64.3 KD GTP-BINDING PROTEIN C02F5.3 IN CHROMOSOME III
>gi|630509|pir||S44605 C02F5.3 protein - Caenorhabditis
elegans >gi|289610 (L14745) homology with GTP binding
protein; putative [Caenorhabditis elegans]
Length = 573
Score = 55.0 bits (130), Expect(2) = 5e-14
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKID--EEPIVIKRDKNTVKHL 176
+P+ V I N+D LLE MW + L+R+Y K K GN D E +I R T++H
Sbjct: 262 MPHHVVISCEMNLNMDYLLEKMWEYLALVRVYTK-KPGNAPDLGPEDGIILRGGATIEHC 320
Query: 177 CNIIHKSIIEKXKYAL 224
C+ +H+SI + +YA+
Sbjct: 321 CHALHRSIAAQLRYAI 336
Score = 43.0 bits (99), Expect(2) = 5e-14
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKKI 316
VWG+S K +PQ+VG H+L+ EDV+QI++++
Sbjct: 337 VWGTSTKFSPQRVGLHHKLDHEDVIQIMRRL 367
>gi|2950451|emb|CAA17801| (AL022071) gtp-binding protein 1 [Schizosaccharomyces pombe]
Length = 135
Score = 56.6 bits (134), Expect(2) = 9e-14
Identities = 27/74 (36%), Positives = 46/74 (61%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+P SV I + + N+D L E +W + L RIY K KG E +++++ +T++ +CN
Sbjct: 33 LPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALIVRKG-STIEQVCN 91
Query: 183 IIHKSIIEKXKYAL 224
IH+++ E+ KYAL
Sbjct: 92 RIHRTLAEQLKYAL 105
Score = 40.6 bits (93), Expect(2) = 9e-14
Identities = 17/30 (56%), Positives = 22/30 (72%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG+S KH+PQ VG +H + + DVV IV K
Sbjct: 106 VWGTSAKHSPQVVGLNHRVEEGDVVTIVTK 135
>gi|2654192 (AF035177) GTP-binding protein [Oncorhynchus tshawytsha]
Length = 364
Score = 53.9 bits (127), Expect(2) = 1e-13
Identities = 28/73 (38%), Positives = 44/73 (59%)
Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185
P+SV I + N+D LLE +W + LI +Y K K G + D +I R +V+H+C+
Sbjct: 263 PHSVVISCGMKLNLDFLLERLWEYLALICLYTK-KRGERPDFSDAIIMRRGASVEHVCHR 321
Query: 186 IHKSIIEKXKYAL 224
IH+++ + KYAL
Sbjct: 322 IHRTLASQFKYAL 334
Score = 43.0 bits (99), Expect(2) = 1e-13
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG+S K +PQ+VG H + EDV+QIVKK
Sbjct: 335 VWGTSTKFDPQRVGLTHIMEHEDVIQIVKK 364
>gi|417095|sp|P32235|GTP1_SCHPO GTP-BINDING PROTEIN 1 >gi|419815|pir||JT0741 GTP-binding protein 1
- fission yeast (Schizosaccharomyces pombe) >gi|173396
(L00671) GTP-binding protein [Schizosaccharomyces pombe]
Length = 364
Score = 55.8 bits (132), Expect(2) = 1e-13
Identities = 28/74 (37%), Positives = 45/74 (59%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+P SV I + + N+D L E +W + L RIY K KG E ++I + +T++ +CN
Sbjct: 262 LPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALIIHKG-STIEQVCN 320
Query: 183 IIHKSIIEKXKYAL 224
IH+++ E+ KYAL
Sbjct: 321 RIHRTLAEQLKYAL 334
Score = 40.6 bits (93), Expect(2) = 1e-13
Identities = 17/30 (56%), Positives = 22/30 (72%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG+S KH+PQ VG +H + + DVV IV K
Sbjct: 335 VWGTSAKHSPQVVGLNHRVEEGDVVTIVTK 364
>gi|2648391 (AE000956) GTP-binding protein [Archaeoglobus fulgidus]
Length = 355
Score = 55.4 bits (131), Expect(2) = 2e-11
Identities = 24/73 (32%), Positives = 44/73 (59%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+ +++ + A K N+D L E ++ +E IR+Y KP GG EP++++R TV+ +C
Sbjct: 254 VADAIKVSAEKGINLDLLKEQIYRKLEFIRVYLKPPGGKVDFSEPMILRRGA-TVEDICR 312
Query: 183 IIHKSIIEKXKYA 221
+H+ +E +YA
Sbjct: 313 KLHRDFVENFRYA 325
Score = 33.6 bits (75), Expect(2) = 2e-11
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQI 304
VWG SVK + Q+VG +H + D D++ I
Sbjct: 327 VWGKSVKFDGQRVGLEHVVEDGDIITI 353
>gi|2120160|pir||E64465 GTP-binding protein - Methanococcus jannaschii >gi|1591967 (U67573)
GTP-binding protein, member of GTP1/OBG-family
[Methanococcus jannaschii]
Length = 391
Score = 47.6 bits (111), Expect(2) = 6e-11
Identities = 22/67 (32%), Positives = 39/67 (57%)
Query: 21 ICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNIIHKSI 200
+ +K N+D L E ++ + I+IY KP+G +EP++++R TVK +C +HK
Sbjct: 294 VSGNKGINLDLLKEKIYEKLGFIKIYLKPQGKKPDFDEPLIMRRGA-TVKDVCEKLHKDF 352
Query: 201 IEKXKYA 221
+ +YA
Sbjct: 353 VRNFRYA 359
Score = 39.9 bits (91), Expect(2) = 6e-11
Identities = 17/30 (56%), Positives = 21/30 (69%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG S KH Q+VG DH+L D D++ IV K
Sbjct: 361 VWGKSAKHPGQRVGLDHKLEDGDILTIVIK 390
>gi|3136028|emb|CAA19048| (AL023587) hypothetical protein [Schizosaccharomyces pombe]
Length = 347
Score = 56.6 bits (134), Expect(2) = 3e-09
Identities = 27/74 (36%), Positives = 46/74 (61%)
Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182
+P SV I + + N+D L E +W + L RIY K KG E +++++ +T++ +CN
Sbjct: 261 LPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALIVRKG-STIEQVCN 319
Query: 183 IIHKSIIEKXKYAL 224
IH+++ E+ KYAL
Sbjct: 320 RIHRTLAEQLKYAL 333
Score = 25.4 bits (54), Expect(2) = 3e-09
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 224 VWGSSVKHNPQKV 262
VWG+S KH+PQ V
Sbjct: 334 VWGTSAKHSPQVV 346
>gi|3258101|dbj|BAA30784| (AP000006) 387aa long hypothetical developmentally regulated
GTP-binding protein [Pyrococcus horikoshii]
Length = 387
Score = 41.8 bits (96), Expect(2) = 2e-08
Identities = 22/69 (31%), Positives = 41/69 (58%)
Query: 15 VPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNIIHK 194
VP+ A K N++ + E+++++ E+IR++ K G + PI +KR TV + IHK
Sbjct: 290 VPVSAKKRINLEAVKEAIYDVAEIIRVFTK-SPGEEPAYPPIALKRGA-TVMDVAERIHK 347
Query: 195 SIIEKXKYA 221
+++ +YA
Sbjct: 348 DLVKNFRYA 356
Score = 37.5 bits (85), Expect(2) = 2e-08
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
VWG SVK Q+VG DH L D D+V+I K
Sbjct: 358 VWGKSVKFPGQRVGPDHVLEDGDIVEIHAK 387
>gi|141353|sp|P17103|YRB1_HALCU HYPOTHETICAL 40 KD GTP-BINDING PROTEIN IN RIBOSOMAL PROTEIN GENE
CLUSTER 5'REGION >gi|76329|pir||QQHS4C hypothetical
protein, 40K - Halobacterium cutirubrum
>gi|43450|emb|CAA33176| (X15078) ORF protein
[Halobacterium cutirubrum]
Length = 370
Score = 38.7 bits (88), Expect(2) = 1e-07
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 9 NSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNII 188
+++ I A +E +D L E MW + LIRIY G EEP++I+R + TV +
Sbjct: 269 DAIFISAAEEKGLDVLKERMWRALGLIRIYMDKPGRGVDREEPLIIRRGE-TVDDAVQKL 327
Query: 189 HKSIIEKXKYA 221
++ E+ ++A
Sbjct: 328 GGTLDERFRFA 338
Score = 37.5 bits (85), Expect(2) = 1e-07
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313
V G S +H+ Q+VG+DH L DEDV+++V +
Sbjct: 340 VTGPSAQHDDQQVGRDHVLEDEDVLRVVAR 369
>gi|1698846 (U72850) GTP-binding protein [Thermoplasma acidophilum]
Length = 360
Score = 44.5 bits (103), Expect(2) = 2e-05
Identities = 21/68 (30%), Positives = 43/68 (62%)
Query: 21 ICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNIIHKSI 200
+ A + I++L E ++ + LIRIY + K G ++P+++ R+ TV+ +C I++S+
Sbjct: 263 VSAKTGYGIEELKEGIFRSLNLIRIYLRNKAGVVDFQKPLIV-REGTTVREVCRKINRSM 321
Query: 201 IEKXKYAL 224
I+ +YA+
Sbjct: 322 IDSFRYAI 329
Score = 23.9 bits (50), Expect(2) = 2e-05
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 257 KVGKDHELNDEDVVQIVKK 313
+VG D+ L DED+V I+ +
Sbjct: 341 RVGIDYPLMDEDIVTIISR 359
>gi|2494088|sp|Q57695|DAPA_METJA DIHYDRODIPICOLINATE SYNTHASE (DHDPS) >gi|2127847|pir||E64330
dihydrodipicolinate synthase (EC 4.2.1.52) -
Methanococcus jannaschii >gi|1590977 (U67480)
dihydrodipicolinate synthase (dapA) [Methanococcus
jannaschii]
Length = 289
Score = 34.0 bits (76), Expect = 0.77
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPK----GGNKIDEEPIVIKRDKNTVKH 173
P +V + A + NI + E+ N+ ++ + K GN PI+ K +
Sbjct: 144 PKTVKLLAEEYSNISAVKEANPNLSQVSELIHDAKITVLSGNDELTLPIIALGGKGVISV 203
Query: 174 LCNIIHKSIIEKXKYALYGD 233
+ NI+ K +E YAL GD
Sbjct: 204 VANIVPKEFVEMVNYALEGD 223
>gi|4155783 (AE001545) NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 31.3 bits (69), Expect = 5.1
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 12/45 (26%)
Query: 227 IQSIFXFFYYTFMNNIT*MFYCIFISFDY------------NWFFINFISSFGFWIY 93
I S FF YTF+ ++ + ++I +DY +W+ +NF S W++
Sbjct: 156 IYSGMKFFLYTFLASLCMLLGILYIGYDYANNYGMMSFDILDWYQLNFSSGIKTWLF 212
>gi|2735936 (AF015193) NADH dehydrogenase subunit 4 [Onchocerca volvulus]
Length = 410
Score = 31.3 bits (69), Expect = 5.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 218 IFXFFYYTFMNNIT*MFYCIFISFDYNWF-FINFISSFGF 102
+ FF+ F+ + MF+ ++ FDY+WF + F SF F
Sbjct: 9 VLLFFFSPFLFFVFFMFFVLYGFFDYSWFGCLFFFDSFNF 48
>gi|2314437|gb|AAD08316| (AE000631) NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13)
[Helicobacter pylori 26695]
Length = 512
Score = 30.9 bits (68), Expect = 6.7
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 12/45 (26%)
Query: 227 IQSIFXFFYYTFMNNIT*MFYCIFISFDY------------NWFFINFISSFGFWIY 93
I S FF YTF+ ++ + ++I +DY +W+ +NF S W++
Sbjct: 156 IYSGMKFFLYTFLASLCMLLGILYIGYDYANNYGMMSFDILDWYQLNFSSGVKTWLF 212
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82384738
Number of Sequences: 369800
Number of extensions: 1294141
Number of successful extensions: 3122
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3068
Number of HSP's gapped (non-prelim): 48
length of query: 180
length of database: 113,023,754
effective HSP length: 52
effective length of query: 128
effective length of database: 93794154
effective search space: 12005651712
effective search space used: 12005651712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)