BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2X-7R
(520 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3845107 (AE001375) hypothetical protein [Plasmodium falciparum] 39 0.028
gi|2982789 (AE000670) hypothetical protein [Aquifex aeolicus] 37 0.083
gi|2983670 (AE000729) putative protein [Aquifex aeolicus] 37 0.083
gi|1175091|sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN ... 37 0.11
gi|585270|sp|P37899|HS70_PYRSA HEAT SHOCK 70 KD PROTEIN >gi|5415... 36 0.14
gi|3219947|sp|O13747|YDRD_SCHPO HYPOTHETICAL 61.8 KD PROTEIN C16... 36 0.19
gi|2492583|sp|P75264|Y187_MYCPN HYPOTHETICAL ABC TRANSPORTER ATP... 36 0.24
gi|1255424 (U53154) No definition line found [Caenorhabditis ele... 36 0.24
gi|3845309 (AE001424) RESA-H3 antigen [Plasmodium falciparum] 36 0.24
gi|3979818|emb|CAA90257| (Z49967) cDNA EST EMBL:T00743 comes fro... 35 0.32
gi|2128750|pir||E64456 hypothetical protein MJ1254 - Methanococc... 35 0.32
gi|730856|sp|P40418|SWI6_KLULA REGULATORY PROTEIN SWI6 (CELL-CYC... 35 0.42
gi|2126577|pir||S54427 gyrase-like protein alpha chain - Staphyl... 34 0.55
gi|3915801|sp|P50073|PARC_STAAU TOPOISOMERASE IV SUBUNIT A >gi|1... 34 0.55
gi|1777318|dbj|BAA11085| (D67074) DNA topoisomerase IV GrlA subu... 34 0.72
gi|2983243 (AE000699) chromosome assembly protein homolog [Aquif... 34 0.72
gi|2098793 (U96641) HSP70-related protein [Helianthus annuus] 34 0.72
gi|1498496 (U64207) heat shock protein 70 [Penicillium citrinum] 34 0.94
gi|3461874|dbj|BAA32525| (D85734) Heat shock protein 70 [Mus mus... 34 0.94
gi|3924750|emb|CAB02319| (Z80223) similar to HSP-1 heat shock 70... 34 0.94
gi|123637|sp|P09446|HS7A_CAEEL HEAT SHOCK 70 KD PROTEIN A >gi|72... 34 0.94
gi|90605|pir||JH0095 heat shock protein 70 - mouse >gi|387211 (M... 34 0.94
gi|2495340|sp|Q61696|HS73_MOUSE HEAT SHOCK 70 KD PROTEIN 3 (HSP7... 34 0.94
gi|2506541|sp|P17879|HS71_MOUSE HEAT SHOCK 70 KD PROTEIN 1 (HSP7... 34 0.94
gi|387209 (M12572) 68 kDa heat shock protein [Mus musculus] 34 0.94
gi|387210 (M12573) 68 kDa heat shock protein [Mus musculus] 34 0.94
gi|3986773 (AF109906) HSP70 [Mus musculus] 34 0.94
gi|3875743|emb|CAB04081| (Z81497) similar to aspartyl-tRNA synth... 34 0.94
gi|401205|sp|Q02088|TPM_SCHPO TROPOMYOSIN >gi|283081|pir||S27127... 33 1.2
gi|1197337|emb|CAA64859| (X95601) Lmp4 protein [Mycoplasma hominis] 33 1.2
gi|2127599|pir||PC6003 surface membrane protein lmp4 - Mycoplasm... 33 1.2
gi|421408|pir||S33441 EF protein - Streptococcus suis >gi|298032... 33 1.2
gi|1170370|sp|P41753|HS70_ACHKL HEAT SHOCK 70 KD PROTEIN >gi|107... 33 1.2
gi|1255880 (U53342) F01G12.6 gene product [Caenorhabditis elegans] 33 1.2
gi|4033372|sp|O51876|ATPF_BUCAP ATP SYNTHASE B CHAIN (SUBUNIT I)... 33 1.2
gi|1182039|emb|CAA93291| (Z69368) Cdc8 [Schizosaccharomyces pombe] 33 1.2
gi|158854 (M63605) glucose regulated protein [Echinococcus granu... 33 1.2
gi|158852 (M63604) glucose regulated protein [Echinococcus multi... 33 1.2
gi|2495773|sp|Q60376|Y064_METJA HYPOTHETICAL PROTEIN MJ0064 >gi|... 33 1.2
gi|84129|pir||S00250 myosin heavy chain - slime mold (Dictyostel... 33 1.6
gi|3158498 (AF067622) contains similarity to Mus musculus probab... 33 1.6
gi|127774|sp|P08799|MYS2_DICDI MYOSIN II HEAVY CHAIN, NON MUSCLE... 33 1.6
gi|3322552 (AE001209) ribosomal protein S1 (rpsA) [Treponema pal... 32 2.1
gi|410720|bbs|137318 DNA polymerase alpha, DNAPol alpha [Plasmod... 32 2.8
gi|542425|pir||S41649 DNA polymerase - Plasmodium falciparum 32 2.8
gi|3327100|dbj|BAA31618| (AB014543) KIAA0643 protein [Homo sapiens] 32 2.8
gi|127934|sp|P18140|NCAP_TACV NUCLEOCAPSID PROTEIN (NUCLEOPROTEI... 32 2.8
gi|1813609 (U75379) glycoprotein precursor [Watermelon spotted w... 32 2.8
gi|731283|sp|P39723|YAE7_YEAST HYPOTHETICAL 72.1 KD PROTEIN IN A... 32 2.8
gi|3877245|emb|CAB07612| (Z93382) similar to XPG N-terminal doma... 32 2.8
gi|3334189|sp|O32861|FTSY_MYCHO CELL DIVISION PROTEIN FTSY HOMOL... 32 3.6
gi|2736517 (AF039052) contains similarity to helicases [Caenorha... 32 3.6
gi|1136225|emb|CAA62510| (X91047) hook-associated protein 2 [Xen... 32 3.6
gi|2129202|pir||A64499 phosphoserine phosphatase - Methanococcus... 32 3.6
gi|2128895|pir||D64486 hypothetical protein MJ1493 - Methanococc... 32 3.6
gi|2983955 (AE000747) putative protein [Aquifex aeolicus] 32 3.6
gi|3758844|emb|CAB11129| (Z98551) predicted using hexExon; MAL3P... 32 3.6
gi|3649757|emb|CAB11106| (Z98547) predicted using hexExon; MAL3P... 31 4.8
gi|4126591|dbj|BAA36620| (AB016212) complement C3-H2 [Cyprinus c... 31 4.8
gi|418242|sp|P32999|VI01_VARV PROTEIN I1 >gi|420483|pir||S33070 ... 31 4.8
gi|3745892 (L33180) AcMNPV orf66 [Bombyx mori nuclear polyhedros... 31 4.8
gi|1255425 (U53154) No definition line found [Caenorhabditis ele... 31 4.8
gi|3170500 (AF052873) APETALA3 homolog PnAP3-1 [Papaver nudicaule] 31 4.8
gi|266889|sp|Q00798|RBP1_PLAVB RETICULOCYTE BINDING PROTEIN 1 PR... 31 6.2
gi|3114907|emb|CAA74243| (Y13926) heat shock protein 70 [Rhabdoc... 31 6.2
gi|731380|sp|P32639|BRR2_YEAST PRE-MRNA SPLICING HELICASE BRR2 >... 31 6.2
gi|283481|pir||A42771 reticulocyte-binding protein 1 - Plasmodiu... 31 6.2
gi|1076791|pir||S49818 calcium-binding protein - maize >gi|21193... 31 6.2
gi|2462783 (U73162) M-protein [Streptococcus equi] 31 6.2
gi|3861050|emb|CAA14950| (AJ235272) CELL SURFACE ANTIGEN (sca4) ... 31 6.2
gi|2494189|sp|Q83948|DPOL_NPVOP DNA POLYMERASE >gi|1063688 (U391... 31 6.2
gi|731153|sp|P03691|VR2B_BPT4 RIIB PROTEIN >gi|2145003|pir||Z2BP... 31 6.2
gi|2132149|pir||S63463 hypothetical protein YPL019c - yeast (Sac... 31 6.2
gi|477238|pir||A48439 heat shock protein Hsp70 - Entamoeba histo... 31 6.2
gi|465073|sp|P33819|VE06_VARV PROTEIN E6 >gi|419303|pir||I36841 ... 31 8.2
gi|544825|bbs|143045 E6R product [variola virus VAR, India-1967,... 31 8.2
gi|1695717|dbj|BAA13947| (D89341) luminal binding protein [Arabi... 31 8.2
gi|2688426 (AE001153) B. burgdorferi predicted coding region BB0... 31 8.2
gi|507130|emb|CAA51437| (X72932) emm64 [Streptococcus pyogenes] 31 8.2
gi|1363430|pir||S57835 IgG-binding protein emmL precursor - Stre... 31 8.2
gi|2688156 (AE001136) single-stranded-DNA-specific exonuclease (... 31 8.2
gi|3878319|emb|CAA94285| (Z70284) cDNA EST EMBL:T01421 comes fro... 31 8.2
gi|3329314 (AE001357) Polyribonucleotide Nucleotidyltransferase ... 31 8.2
gi|3093478 (AF012927) fibrinogen-binding protein [Streptococcus ... 31 8.2
gi|729525|sp|P39738|FLID_BACSU FLAGELLAR HOOK-ASSOCIATED PROTEIN... 31 8.2
gi|1346410|sp|P08928|LAM0_DROME LAMIN DM0 >gi|441286|emb|CAA3025... 31 8.2
gi|2128716|pir||H64447 hypothetical protein MJ1185 - Methanococc... 31 8.2
gi|1762345 (U56901) flagellar hook-associated protein 2 [Bacillu... 31 8.2
gi|2292986|emb|CAA04133| (AJ000496) cyclic nucleotide-gated chan... 31 8.2
gi|462329|sp|P34931|HS7H_HUMAN HEAT SHOCK 70 KD PROTEIN 1-HOM (H... 31 8.2
gi|1351624|sp|Q09863|YAFA_SCHPO HYPOTHETICAL 122.9 KD PROTEIN C2... 31 8.2
gi|3461866|dbj|BAA32521| (D85730) Heat shock protein 70 testis v... 31 8.2
gi|4529894|gb|AAD21817| (AF134726) HSP70-HOM [Homo sapiens] 31 8.2
gi|85042|pir||A29965 lamin Dm-0 precursor - fruit fly (Drosophil... 31 8.2
gi|2293014|emb|CAA71688| (Y10687) purine NTPase [Sulfolobus acid... 31 8.2
gi|2598618|emb|CAA04342| (AJ000864) histidine kinase [Streptococ... 31 8.2
gi|4097980 (U72655) surface protein C [Streptococcus pneumoniae] 31 8.2
gi|1722855|sp|P50532|XCPC_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP... 31 8.2
>gi|3845107 (AE001375) hypothetical protein [Plasmodium falciparum]
Length = 1979
Score = 38.7 bits (88), Expect = 0.028
Identities = 35/117 (29%), Positives = 58/117 (48%), Gaps = 1/117 (0%)
Query: 31 KVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTAL 210
K+EE E +K +++ D N E++LKE ED K+ +D L+ EN +E L +
Sbjct: 154 KIEELEKELK-EVKDKNIDNNDYENKLKEKEDFVKQKIDMLNEKENLLQEKELDINKREK 212
Query: 211 KKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLE-KDKE 381
K K + IK H++ E +L E + I I+K +E+ +E K+K+
Sbjct: 213 KINEKEKNIIKKEETFHNIEKE---YLEKNKERETISIEIIDIKKHLEKLKIEIKEKK 267
>gi|2982789 (AE000670) hypothetical protein [Aquifex aeolicus]
Length = 592
Score = 37.1 bits (84), Expect = 0.083
Identities = 43/132 (32%), Positives = 72/132 (53%), Gaps = 26/132 (19%)
Query: 19 LSKRKVEEDELTVKKQIRKXARDGN-----LSESEL-------------KEIEDK-RKEL 141
LSK KV+ +L +K I +DG L ++EL KE E+K +KEL
Sbjct: 277 LSKEKVDSVDLNIKAGISSYPQDGENPKELLEKAELALLFAKNTVNFYKKEYEEKLKKEL 336
Query: 142 LDKLDNNENTEEEAYLIVFLTALK-KGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKF- 315
K E+ E++ + +V+ + K + + + H L E+ + + EK+
Sbjct: 337 RIKEFLEESIEKKEFGVVYQPIVSLKDFRPVGAEALVRWYHPELGEVPPSIFVPVAEKYG 396
Query: 316 ---RKDYIFTIEKFIEETTLEKDKEFYNSIFY--EKFY 414
+ +YI + F E + K++EFY SI E+FY
Sbjct: 397 LVSQINYIVMEKAFRELSDFVKEREFYLSINVNAEQFY 434
>gi|2983670 (AE000729) putative protein [Aquifex aeolicus]
Length = 235
Score = 37.1 bits (84), Expect = 0.083
Identities = 35/130 (26%), Positives = 66/130 (49%), Gaps = 9/130 (6%)
Query: 28 RKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTA 207
+K+EE+ +K+++ ++ +E+E+ +K+L E E E L V
Sbjct: 27 KKIEEEVKKLKEELEALLKEKETLLKRKEELENLKKQL-----QEEVKEAEEKLKVTEEK 81
Query: 208 LKKGTKAISTIKNLPNAHSMLNEIIK--FLVDKIEEKFRK------DYIFTIEKFIEETT 363
L K T+ + L + ++I+K + +D+IEE+ K + + IE+ ++E
Sbjct: 82 LMKVTRDVEYKALLREKSKLEDKILKKSYEIDQIEEELEKITKEIEEKVPRIERQVKEIE 141
Query: 364 LE-KDKEFYNSIFYEKFYE 417
E KD E SI + K +E
Sbjct: 142 EELKDLELEESIAHRKIHE 160
>gi|1175091|sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LEF3 INTERGENIC REGION
>gi|559135|gb|AAA66696| (L22858) AcOrf-66 peptide
[Autographa californica nucleopolyhedrovirus]
Length = 808
Score = 36.7 bits (83), Expect = 0.11
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 10 NNMLSKRKVEEDELTVK-KQIRKXARDGNLSESE----LKEIEDKRKELLDKLDN--NEN 168
N + + + DEL +K K+I + + +SE +K++E KEL D + +EN
Sbjct: 336 NERVETLQSQYDELDLKYKEIFEDKSEFAQQKSENVRKIKQLERSNKELNDTVQKLRDEN 395
Query: 169 TEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKF 348
E + + L+KG + N + LNE I L +IE F KDY+ T+
Sbjct: 396 AERLSEI-----QLQKGD-----LDEYKNMNRQLNEDIYKLKRRIESTFDKDYVETLNDK 445
Query: 349 IEETTLEK---DKEFYN 390
IE +LEK DK+ N
Sbjct: 446 IE--SLEKQLDDKQNLN 460
>gi|585270|sp|P37899|HS70_PYRSA HEAT SHOCK 70 KD PROTEIN >gi|541530|pir||S42488 heat shock protein
70 - Pyrenomonas salina nucleomorph
>gi|461336|emb|CAA51197| (X72621) hsp70 [Pyrenomonas
salina]
Length = 649
Score = 36.4 bits (82), Expect = 0.14
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E ++ +R + E + K IE+K KE+L+ ++ NE+ E+E Y
Sbjct: 544 AKNSLENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVKEVLEFIETNEDLEKEEY 598
>gi|3219947|sp|O13747|YDRD_SCHPO HYPOTHETICAL 61.8 KD PROTEIN C16E8.13 IN CHROMOSOME I
>gi|2330701|emb|CAB11041| (Z98529) hypothetical
zinc_finger protein [Schizosaccharomyces pombe]
Length = 547
Score = 36.0 bits (81), Expect = 0.19
Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGN--------LSESELKEIEDKRKELLDKLDN-N 162
+NM K +EL +K +I + + N +SES+LK+ +DK K + +L++
Sbjct: 381 SNMSQKLSRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEHLK 440
Query: 163 ENTEEE----AYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYI 330
N EEE L+V + L+K +N + +++ ++F ++ + E+ R D +
Sbjct: 441 HNYEEEKSMNENLLVRIQTLEK--------QNTTKSDQIVS--MQFQINDLNEQLR-DLM 489
Query: 331 FTIEKFIEETTLEKDKEFYN 390
FTI E + + +E N
Sbjct: 490 FTISASQEIQKMGQSEELQN 509
>gi|2492583|sp|P75264|Y187_MYCPN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MG187 HOMOLOG
>gi|2146652|pir||S73346 sn-glycerol-3-phosphate
transport system permease ugpC - Mycoplasma pneumoniae
(SGC3) (ATCC 29342) >gi|1673667 (AE000003) Mycoplasma
pneumoniae, sn-glycerol-3-phosphate transport system
permease protein; similar to Swiss-Prot Accession Number
P10907, from E. coli [Mycoplasma pneumoniae]
Length = 586
Score = 35.6 bits (80), Expect = 0.24
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 9/52 (17%)
Query: 25 KRKVEEDELTVKKQIRK---------XARDGNLSESELKEIEDKRKELLDKLDNNENTEE 177
K K+ + L +KKQ R +DGNL+ESEL +IE+ +K ++ D T +
Sbjct: 286 KWKIHFEPLNLKKQYRSYFKQLKAKYSLKDGNLTESELSQIEELQKRIVSLKDFINRTAK 345
Query: 178 E 180
E
Sbjct: 346 E 346
>gi|1255424 (U53154) No definition line found [Caenorhabditis elegans]
Length = 142
Score = 35.6 bits (80), Expect = 0.24
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 25 KRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEE 180
K K+EE++ +K+ +K + GN + + +E EDK K+ DK N ++ EEE
Sbjct: 65 KDKIEENK---EKREKKNKKKGNKKDEDEEEEEDKDKKKKDKKKNKDSEEEE 113
>gi|3845309 (AE001424) RESA-H3 antigen [Plasmodium falciparum]
Length = 1558
Score = 35.6 bits (80), Expect = 0.24
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 1 EFWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDK-----LDNNE 165
E N ++ +EE + + + A + SE E KE+ D +E+ ++ ++ E
Sbjct: 648 EIQENTITNDTIEEKLEELHENVLSAALENTQSEEEKKEVIDVIEEVKEEVATTLIETVE 707
Query: 166 NTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNE-IIKFLVDKIEEKFRKDYIFTIE 342
EEE+ + A+ + +N+ LNE + ++DK+EE T+E
Sbjct: 708 QAEEESASTITEIFENLEENAVESNENVAENLEKLNETVFNTVLDKVEE--------TVE 759
Query: 343 KFIEE-TTLEKDKEFYNSIF 399
E E DK F++ IF
Sbjct: 760 ISGESLENNEMDKAFFSEIF 779
>gi|3979818|emb|CAA90257| (Z49967) cDNA EST EMBL:T00743 comes from this gene; cDNA EST
EMBL:D69356 comes from this gene; cDNA EST EMBL:D65790
comes from this gene; cDNA EST EMBL:D70463 comes from
this gene; cDNA EST EMBL:D66620 comes from this gene;
cDN...
Length = 740
Score = 35.2 bits (79), Expect = 0.32
Identities = 28/104 (26%), Positives = 49/104 (46%)
Query: 1 EFWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEE 180
EF++ +RK E+ + KK+I G S E E KE+ + D N+NTEE+
Sbjct: 575 EFFDRKAYQRKAED--VNKKKRILSIDFGGKKSLKRKMEDEQMEKEMAEMNDQNDNTEED 632
Query: 181 AYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEK 312
A K+G K + + N + E I+ V++++++
Sbjct: 633 AE--KKKKKKKRGKKKVK-LTETENPEENMTEAIENEVEEVDKQ 673
>gi|2128750|pir||E64456 hypothetical protein MJ1254 - Methanococcus jannaschii >gi|1591888
(U67566) M. jannaschii predicted coding region MJ1254
[Methanococcus jannaschii]
Length = 469
Score = 35.2 bits (79), Expect = 0.32
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 4 FWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEA 183
F +SKRK+ E +K ++ E E+K + K K+L DKL
Sbjct: 268 FVKEKISKRKIIERTKNIKNELTSLKNKLKEKEEEIKNLAIKIKDLEDKL---------- 317
Query: 184 YLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIF-----TIEKF 348
+KA + N S+LNE I +I++ ++ I+ ++ K+
Sbjct: 318 ------------SKANKNLLNKDEIISVLNERISEYESQIQKLLDENIIYKEKIESLNKY 365
Query: 349 IEETTLEKDK 378
IE E DK
Sbjct: 366 IETLKKENDK 375
>gi|730856|sp|P40418|SWI6_KLULA REGULATORY PROTEIN SWI6 (CELL-CYCLE BOX FACTOR, CHAIN SWI6)
(TRANS-ACTING ACTIVATOR OF HO ENDONUCLEASE GENE) (MBF
SUBUNIT P90) >gi|480316|pir||S36657 SWI6 protein - yeast
(Kluyveromyces marxianus var. lactis)
>gi|397612|emb|CAA52345| (X74292) SWI6 [Kluyveromyces
lactis]
Length = 769
Score = 34.8 bits (78), Expect = 0.42
Identities = 31/116 (26%), Positives = 54/116 (45%), Gaps = 5/116 (4%)
Query: 25 KRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLT 204
K K D L +K++ ARD ++ K+I+D+ L D+L+N ENT E L
Sbjct: 523 KMKELLDTLNIKREALANARD---RLAKAKQIQDEYNLLSDRLNNVENTIAEEDQNFQLA 579
Query: 205 ALKKGTKAISTIKNLPNAHSMLNEI-----IKFLVDKIEEKFRKDYIFTIEKFIEETTLE 369
+ + G + N+ + + I ++ K EEK + +Y E F++ L
Sbjct: 580 SRELGLSLDDVQEEGLNSADIAFDADEPFRISYVYTKFEEKIKDEYNNDFELFLKHCNLS 639
Query: 370 K 372
+
Sbjct: 640 Q 640
>gi|2126577|pir||S54427 gyrase-like protein alpha chain - Staphylococcus aureus >gi|561880
(L25288) gyrase-like protein alpha subunit
[Staphylococcus aureus]
Length = 800
Score = 34.4 bits (77), Expect = 0.55
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 14/89 (15%)
Query: 109 LKEIEDKRKELLDKLDNNENTEEEAYLIVFLTAL--------------KKGTKAISTIKN 246
++ ++KR + ++ E TEE+A IV L K+ I +++
Sbjct: 393 IRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRH 452
Query: 247 LPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKD 375
+ + H L +IK +++I++KF+ + + IE IEE ++K+
Sbjct: 453 ILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKE 495
>gi|3915801|sp|P50073|PARC_STAAU TOPOISOMERASE IV SUBUNIT A >gi|1777321|dbj|BAA11087| (D67075) DNA
topoisomerase IV GrlA subunit [Staphylococcus aureus]
Length = 800
Score = 34.4 bits (77), Expect = 0.55
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 14/89 (15%)
Query: 109 LKEIEDKRKELLDKLDNNENTEEEAYLIVFLTAL--------------KKGTKAISTIKN 246
++ ++KR + ++ E TEE+A IV L K+ I +++
Sbjct: 393 IRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRH 452
Query: 247 LPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKD 375
+ + H L +IK +++I++KF+ + + IE IEE ++K+
Sbjct: 453 ILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKE 495
>gi|1777318|dbj|BAA11085| (D67074) DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
Length = 800
Score = 34.0 bits (76), Expect = 0.72
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 14/89 (15%)
Query: 109 LKEIEDKRKELLDKLDNNENTEEEAYLIVFLTAL--------------KKGTKAISTIKN 246
++ ++KR + ++ E TEE+A IV L K+ I +++
Sbjct: 393 IRSSKNKRDAKENLIEVFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRH 452
Query: 247 LPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKD 375
+ + H L +IK +++I++KF+ + + IE IEE ++K+
Sbjct: 453 ILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKE 495
>gi|2983243 (AE000699) chromosome assembly protein homolog [Aquifex aeolicus]
Length = 1156
Score = 34.0 bits (76), Expect = 0.72
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 1 EFWNNMLS-KRKVEEDELTVKKQIRKXARD----GNLSESELKEIEDKRKELLDKLDNNE 165
E NN+LS K +E + T++ ++ K + + +L+E+E++ + L D +
Sbjct: 325 ELINNLLSDKENLEREVGTLQLELEKLKEEYKSLKEVEREKLRELEEEEERLKITFDEVK 384
Query: 166 NTEEE-AYLIVFLTALKKGTKAISTIK-NLPNAHSMLNEIIKFLVDKIEEKFRK 321
EEE L L +L K + + + NL N + E I L+ + EEK ++
Sbjct: 385 KLEEEKEKLTEKLNSLNKEKQELEIQRANLKNKIERIKEDINKLISEREEKIKE 438
Score = 30.9 bits (68), Expect = 6.2
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 23/120 (19%)
Query: 19 LSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELL-------DKLDNNENTEE 177
LS +E+ E K+++ + E +L +EDK KEL +KL+N + E
Sbjct: 710 LSSEGLEQYEEKFKEKLENSKEYLKILEEKLLNVEDKLKELAEEIEYYEEKLNNLKLKEG 769
Query: 178 EAYLIVFLTALKKGTKAISTI-KNLPNAHSMLNEI----------IKFLVDKIEEKFRK- 321
+ +++ + S + K + LNEI +++L +I+EK R+
Sbjct: 770 DIKRHYSREGVEEKRREYSKVRKQVSEIEKSLNEIERELNKKTYELEYLEKEIQEKERER 829
Query: 322 ----DYIFTIEKFIEETTLEKDK 378
+ I +++K IE L K+K
Sbjct: 830 EYLTERIKSLKKEIENLILFKEK 852
>gi|2098793 (U96641) HSP70-related protein [Helianthus annuus]
Length = 264
Score = 34.0 bits (76), Expect = 0.72
Identities = 20/55 (36%), Positives = 32/55 (57%), Gaps = 1/55 (1%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKE-IEDKRKELLDKLDNNENTEEEAY 186
++ +E +K QI + + ES+ KE IE KE LD+LD+N++ E+E Y
Sbjct: 167 ARNALETYVYNMKNQINDKDKLADKLESDEKEKIEAATKEALDRLDDNQSAEKEEY 222
>gi|1498496 (U64207) heat shock protein 70 [Penicillium citrinum]
Length = 503
Score = 33.6 bits (75), Expect = 0.94
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 94 LSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+S+ + K+IEDK E++ LDNN+ E++ Y
Sbjct: 428 MSDDDKKKIEDKISEIISWLDNNQTAEKDEY 458
>gi|3461874|dbj|BAA32525| (D85734) Heat shock protein 70 [Mus musculus]
Length = 143
Score = 33.6 bits (75), Expect = 0.94
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ + +K +E +K + G LSE++ K++ DK +E++ LD+N ++E ++
Sbjct: 36 DRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFV 95
>gi|3924750|emb|CAB02319| (Z80223) similar to HSP-1 heat shock 70kd protein A; cDNA EST
EMBL:M88780 comes from this gene; cDNA EST EMBL:M88807
comes from this gene; cDNA EST EMBL:Z14396 comes from
this gene; cDNA EST EMBL:M88840 comes from this gene;
cD...
Length = 640
Score = 33.6 bits (75), Expect = 0.94
Identities = 17/55 (30%), Positives = 29/55 (51%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E +K+ I +S + K+IEDK E+L LD+N+ E+E +
Sbjct: 539 AKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEF 593
>gi|123637|sp|P09446|HS7A_CAEEL HEAT SHOCK 70 KD PROTEIN A >gi|72214|pir||HHKW7A heat shock protein
70 A - Caenorhabditis elegans >gi|156352 (M18540) heat
shock protein 70A [Caenorhabditis elegans]
Length = 640
Score = 33.6 bits (75), Expect = 0.94
Identities = 17/55 (30%), Positives = 29/55 (51%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E +K+ I +S + K+IEDK E+L LD+N+ E+E +
Sbjct: 539 AKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEF 593
>gi|90605|pir||JH0095 heat shock protein 70 - mouse >gi|387211 (M35021) hsp70.1 [Mus
musculus] >gi|3986772 (AF109906) HSP70 [Mus musculus]
Length = 642
Score = 33.6 bits (75), Expect = 0.94
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ + +K +E +K + G LSE++ K++ DK +E++ LD+N ++E ++
Sbjct: 534 DRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFV 593
>gi|2495340|sp|Q61696|HS73_MOUSE HEAT SHOCK 70 KD PROTEIN 3 (HSP70.3) >gi|90604|pir||A26283 heat
shock protein 68 - mouse (fragment) >gi|387208 (M12571)
68 kDa heat shock protein [Mus musculus]
Length = 420
Score = 33.6 bits (75), Expect = 0.94
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ + +K +E +K + G LSE++ K++ DK +E++ LD+N ++E ++
Sbjct: 313 DRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFV 372
>gi|2506541|sp|P17879|HS71_MOUSE HEAT SHOCK 70 KD PROTEIN 1 (HSP70.1) (HSP70-1/HSP70-2) >gi|193983
(M76613) hsp70A1 [Mus musculus]
Length = 641
Score = 33.6 bits (75), Expect = 0.94
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ + +K +E +K + G LSE++ K++ DK +E++ LD+N ++E ++
Sbjct: 534 DRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFV 593
>gi|387209 (M12572) 68 kDa heat shock protein [Mus musculus]
Length = 266
Score = 33.6 bits (75), Expect = 0.94
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ + +K +E +K + G LSE++ K++ DK +E++ LD+N ++E ++
Sbjct: 159 DRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFV 218
>gi|387210 (M12573) 68 kDa heat shock protein [Mus musculus]
Length = 228
Score = 33.6 bits (75), Expect = 0.94
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ + +K +E +K + G LSE++ K++ DK +E++ LD+N ++E ++
Sbjct: 120 DRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFV 179
>gi|3986773 (AF109906) HSP70 [Mus musculus]
Length = 641
Score = 33.6 bits (75), Expect = 0.94
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ + +K +E +K + G LSE++ K++ DK +E++ LD+N ++E ++
Sbjct: 534 DRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFV 593
>gi|3875743|emb|CAB04081| (Z81497) similar to aspartyl-tRNA synthetase; cDNA EST yk250e3.3
comes from this gene [Caenorhabditis elegans]
Length = 569
Score = 33.6 bits (75), Expect = 0.94
Identities = 25/91 (27%), Positives = 51/91 (55%), Gaps = 10/91 (10%)
Query: 85 DGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTALKKGT---KAISTIKNLPN 255
D S+ + +IE ++ K NNEN+ E + + L +++ T KA S I LP+
Sbjct: 48 DNRNSKMKTGDIEVNFQKYYFKSGNNENSNREVFDFLILIDVEELTVLNKATSNIPMLPD 107
Query: 256 AHSMLNEIIKFLV-----DKIEE--KFRKDYIFTIEKFIEE 357
A++ +K+ DK+++ + R +++ + +F+ E
Sbjct: 108 ANANERTRLKYRYIDLRSDKLQKSLRLRSEFVHNVRRFLVE 148
>gi|401205|sp|Q02088|TPM_SCHPO TROPOMYOSIN >gi|283081|pir||S27127 tropomysin - yeast
(Schizosaccharomyces pombe) >gi|173517 (L04126)
tropomyosin [Schizosaccharomyces pombe]
>gi|383003|prf||1901354A tropomyosin
[Schizosaccharomyces pombe]
Length = 161
Score = 33.2 bits (74), Expect = 1.2
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 22 SKRKVEEDELTVKKQ-IRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEA 183
+K K E +L++K+Q +R +ES+L+E+E++ K+L K DN + + EA
Sbjct: 27 AKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEA 81
>gi|1197337|emb|CAA64859| (X95601) Lmp4 protein [Mycoplasma hominis]
Length = 624
Score = 33.2 bits (74), Expect = 1.2
Identities = 45/123 (36%), Positives = 72/123 (57%), Gaps = 35/123 (28%)
Query: 28 RKVEEDELTVK--KQIRKXARDGNLSESEL------KEIEDKRKELLDKLDNNENTEE-- 177
+++E D T K + I K +D ++ + KEI+D K L D+L+N + T++
Sbjct: 359 KQIENDPQTKKNYQNIVKNLKDKKAEKNSITFSNNKKEIQDANKSLQDELNNAKITKKGI 418
Query: 178 -EAY--------LIVFLTALKKGTKAISTI----KNLPNAHS---------MLNEIIKFL 291
+ Y LI A K GT TI KN+ +A +N+I K +
Sbjct: 419 TDFYNSKKQLEDLIKTDDAKKVGTTEADTILDHYKNISDASKNEEIKQATQKINDIKKII 478
Query: 292 VDKIEEKFRKDYI-FTIEKFIEETTLEKD--KEFYNSI 396
KI+EK R ++ F K ++ + KD + YNSI
Sbjct: 479 ETKIQEKKRNEFSQFEQIKNELQSFINKDLKDQKYNSI 516
>gi|2127599|pir||PC6003 surface membrane protein lmp4 - Mycoplasma hominis (SGC3)
(fragment)
Length = 624
Score = 33.2 bits (74), Expect = 1.2
Identities = 45/123 (36%), Positives = 72/123 (57%), Gaps = 35/123 (28%)
Query: 28 RKVEEDELTVK--KQIRKXARDGNLSESEL------KEIEDKRKELLDKLDNNENTEE-- 177
+++E D T K + I K +D ++ + KEI+D K L D+L+N + T++
Sbjct: 359 KQIENDPQTKKNYQNIVKNLKDKKAEKNSITFSNNKKEIQDANKSLQDELNNAKITKKGI 418
Query: 178 -EAY--------LIVFLTALKKGTKAISTI----KNLPNAHS---------MLNEIIKFL 291
+ Y LI A K GT TI KN+ +A +N+I K +
Sbjct: 419 TDFYNSKKQLEDLIKTDDAKKVGTTEADTILDHYKNISDASKNEEIKQATQKINDIKKII 478
Query: 292 VDKIEEKFRKDYI-FTIEKFIEETTLEKD--KEFYNSI 396
KI+EK R ++ F K ++ + KD + YNSI
Sbjct: 479 ETKIQEKKRNEFSQFEQIKNELQSFINKDLKDQKYNSI 516
>gi|421408|pir||S33441 EF protein - Streptococcus suis >gi|298032|emb|CAA50714| (X71880) EF
[Streptococcus suis]
Length = 1822
Score = 33.2 bits (74), Expect = 1.2
Identities = 34/124 (27%), Positives = 56/124 (44%), Gaps = 18/124 (14%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLS----------------ESELK--EIEDKRK 135
+N ++ K + D+ T +I +G ++ E EL E+E+K
Sbjct: 790 DNKATEAKEKIDKATTASEINDAKTNGEINLDSAEAVGEKAINQAKEKELAKAEVENKAF 849
Query: 136 ELLDKLDNNENTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKF 315
E L+K++NN N EE F + A+ I N N I +D+ E +
Sbjct: 850 EALEKVNNNPNLLEEEKKAYFDDIKESKEVAVEKINNAENTAE-----ITAAIDEAEIAY 904
Query: 316 RKDYIFTIEKFIEETTLEKDKE 381
+D + + LEKD E
Sbjct: 905 NED-VINAAQLDALNKLEKDSE 925
>gi|1170370|sp|P41753|HS70_ACHKL HEAT SHOCK 70 KD PROTEIN >gi|1076847|pir||A53163 heat shock protein
70 - Achlya klebsiana >gi|407302 (U02504) heat shock
protein 70 [Achlya klebsiana]
Length = 652
Score = 33.2 bits (74), Expect = 1.2
Identities = 14/55 (25%), Positives = 31/55 (55%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E ++ + G + ES+ K I+DK ++++ LD+N++ E+E +
Sbjct: 541 AKNGLENYAYNLRNTLNDEKLQGKIDESDKKVIDDKVTDIINWLDHNQSAEKEEF 595
>gi|1255880 (U53342) F01G12.6 gene product [Caenorhabditis elegans]
Length = 466
Score = 33.2 bits (74), Expect = 1.2
Identities = 24/90 (26%), Positives = 48/90 (52%)
Query: 1 EFWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEE 180
E N++ + + +DE ++++ D + + KE+ED+ K+ +KLDN E+ E
Sbjct: 290 ETQNHVCTNQLKRQDE-----EMKRVREDSEVLVKKRKELEDQLKDEKEKLDNKESEFNE 344
Query: 181 AYLIVFLTALKKGTKAISTIKNLPNAHSML 270
+ L K ++A+ TI++L ++ S L
Sbjct: 345 GRINDRL----KYSEAMQTIQDLQSSISQL 370
>gi|4033372|sp|O51876|ATPF_BUCAP ATP SYNTHASE B CHAIN (SUBUNIT I) >gi|2827022 (AF008210) ATP
synthase subunit b [Buchnera aphidicola]
Length = 157
Score = 33.2 bits (74), Expect = 1.2
Identities = 27/113 (23%), Positives = 59/113 (51%), Gaps = 2/113 (1%)
Query: 13 NMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLI 192
+++S +K EE+ + ++K++ + +D S + +K+K ++ + D EE+ I
Sbjct: 43 SLISLKKAEEELIIIQKKMNQIIQDSKEKASFIINEANKKKSIILE-DAKSIALEESKKI 101
Query: 193 VFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDK-IEEKFRKD-YIFTIEKFI 351
L+ K + KNL H + ++ + +K I++ +KD Y ++I+K I
Sbjct: 102 FLRNQLEIDLKVMQVRKNL---HKEIVDLSILIAEKIIKDNIQKDQYKYSIKKLI 153
>gi|1182039|emb|CAA93291| (Z69368) Cdc8 [Schizosaccharomyces pombe]
Length = 182
Score = 33.2 bits (74), Expect = 1.2
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 22 SKRKVEEDELTVKKQ-IRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEA 183
+K K E +L++K+Q +R +ES+L+E+E++ K+L K DN + + EA
Sbjct: 48 AKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEA 102
>gi|158854 (M63605) glucose regulated protein [Echinococcus granulosus]
Length = 651
Score = 33.2 bits (74), Expect = 1.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 25 KRKVEEDELTVKKQIR-KXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+ +E ++K Q++ K G LS+ E+K IED E + ++NN E Y
Sbjct: 561 RNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDY 615
>gi|158852 (M63604) glucose regulated protein [Echinococcus multilocularis]
Length = 649
Score = 33.2 bits (74), Expect = 1.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 25 KRKVEEDELTVKKQIR-KXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+ +E ++K Q++ K G LS+ E+K IED E + ++NN E Y
Sbjct: 561 RNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDY 615
>gi|2495773|sp|Q60376|Y064_METJA HYPOTHETICAL PROTEIN MJ0064 >gi|2128105|pir||H64307 hypothetical
protein MJ0064 - Methanococcus jannaschii >gi|1590855
(U67464) M. jannaschii predicted coding region MJ0064
[Methanococcus jannaschii]
Length = 189
Score = 33.2 bits (74), Expect = 1.2
Identities = 25/72 (34%), Positives = 42/72 (57%), Gaps = 6/72 (8%)
Query: 91 NLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTALKKGTKAI------STIKNLP 252
NLS SEL E+E K KE LD +N + + E + + A+K + I S++K +
Sbjct: 66 NLSVSELDELEKKLKEYLDFAENMKKSVENTHNAII--AVKNEMRDIKHSLEESSLK-IS 122
Query: 253 NAHSMLNEIIKFLVDKIE 306
N ++++ + +K KIE
Sbjct: 123 NRYNLMEDTLKHHSKKIE 140
>gi|84129|pir||S00250 myosin heavy chain - slime mold (Dictyostelium discoideum)
(fragment)
Length = 160
Score = 32.8 bits (73), Expect = 1.6
Identities = 16/45 (35%), Positives = 27/45 (59%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLD 156
+K+K+ +D T+KKQ+ + N SE K +E + ++ L KLD
Sbjct: 23 AKKKLTDDVDTLKKQLEDEKKKLNESERAKKRLESENEDFLAKLD 67
>gi|3158498 (AF067622) contains similarity to Mus musculus probable transcription
factor requiem (GB:U10435) [Caenorhabditis elegans]
Length = 1192
Score = 32.8 bits (73), Expect = 1.6
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 28 RKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTA 207
RK+E++ ++ + + A E EL++IE+K++EL+ ++EEA ++V A
Sbjct: 702 RKLEDEVKRMRMRTKAAAVATKPLEDELEKIEEKKEELVISSPEPPESQEEARIMVAEAA 761
Query: 208 LKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIE-----EKFRKDYIFTIEKFIEETTLEK 372
+GT S + N+ N EI + V EK +Y T F +
Sbjct: 762 --RGT--FSALTNVFNLLQQRCEIYPYDVTMERLPPHVEKLSSEYAQTARLFSNLIEI-T 816
Query: 373 DKEFYNSIF 399
D NSIF
Sbjct: 817 DTVLANSIF 825
>gi|127774|sp|P08799|MYS2_DICDI MYOSIN II HEAVY CHAIN, NON MUSCLE >gi|84128|pir||A26655 myosin heavy
chain - slime mold (Dictyostelium discoideum) >gi|167835
(M14628) myosin heavy chain [Dictyostelium discoideum]
Length = 2116
Score = 32.8 bits (73), Expect = 1.6
Identities = 16/45 (35%), Positives = 27/45 (59%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLD 156
+K+K+ +D T+KKQ+ + N SE K +E + ++ L KLD
Sbjct: 1756 AKKKLTDDVDTLKKQLEDEKKKLNESERAKKRLESENEDFLAKLD 1800
>gi|3322552 (AE001209) ribosomal protein S1 (rpsA) [Treponema pallidum]
Length = 863
Score = 32.5 bits (72), Expect = 2.1
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 31 KVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTAL 210
K + D L +K ++R RDG E + + +K+ + A ++ FL
Sbjct: 380 KTKADRLGLKVKLRDAERDGTPVEGRIVRLTEKKSGF--------EVDLGAGMMAFLPIS 431
Query: 211 KKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEE----KFRKDYIFTIEKFIEETTLEKDK 378
+ + + ++L S KF +++I + + + + +++EE + +
Sbjct: 432 QSDCQKVDAPESLIGLTS------KFYIERISQSKQHRGNDNIVINRRRYLEERARQARE 485
Query: 379 EFYNSIFYE 405
EF+NS+ E
Sbjct: 486 EFFNSVHIE 494
>gi|410720|bbs|137318 DNA polymerase alpha, DNAPol alpha [Plasmodium falciparum, K1,
Peptide, 1855 aa]
Length = 1855
Score = 32.1 bits (71), Expect = 2.8
Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
N +K + ++EL +KK+I+ + N+ E + + ++ + + +NN N ++ Y
Sbjct: 208 NEKKNKIHLMKNELVLKKEIQIKENEENIKEVKEQGSKNNNNKNNNDNNNNNNNVDDFY- 266
Query: 190 IVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLE 369
I N N + +I + K E+K +++ I E+ I E ++
Sbjct: 267 -------------NDYILNEMNISPLFIKIENETLKKEEKKLKENDINDKEEDILENDID 313
Query: 370 KD--KEFYNSIFYEKFYENSS*EYKQYIFFLCLIR*TLL 480
+ K Y + K+ EN++ Y+F +C R +++
Sbjct: 314 SEMLKNKYEQLI--KYEENNNLFVNVYVFDICKHRNSII 350
>gi|542425|pir||S41649 DNA polymerase - Plasmodium falciparum
Length = 1855
Score = 32.1 bits (71), Expect = 2.8
Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
N +K + ++EL +KK+I+ + N+ E + + ++ + + +NN N ++ Y
Sbjct: 208 NEKKNKIHLMKNELVLKKEIQIKENEENIKEVKEQGSKNNNNKNNNDNNNNNNNVDDFY- 266
Query: 190 IVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLE 369
I N N + +I + K E+K +++ I E+ I E ++
Sbjct: 267 -------------NDYILNEMNISPLFIKIENETLKKEEKKLKENDINDKEEDILENDID 313
Query: 370 KD--KEFYNSIFYEKFYENSS*EYKQYIFFLCLIR*TLL 480
+ K Y + K+ EN++ Y+F +C R +++
Sbjct: 314 SEMLKNKYEQLI--KYEENNNLFVNVYVFDICKHRNSII 350
>gi|3327100|dbj|BAA31618| (AB014543) KIAA0643 protein [Homo sapiens]
Length = 403
Score = 32.1 bits (71), Expect = 2.8
Identities = 29/130 (22%), Positives = 63/130 (48%)
Query: 28 RKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTA 207
R++ + + +I + + ++ E+ K K+LL+ + ++E EA +
Sbjct: 181 REMRTEAIARPLEINETEKVMRIAIKEILTQVQKTKDLLNNVASDE-ANLEAKIEKRKLE 239
Query: 208 LKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKDKEFY 387
L++ K + T++++ ++E +K EE+ +K Y +EKF T LE+ E +
Sbjct: 240 LERNRKRLETLQSVRPC--FMDEY-----EKTEEELQKQYDTYLEKFQNLTYLEQQLEDH 292
Query: 388 NSIFYEKFYE 417
+ + E+F E
Sbjct: 293 HRMEQERFEE 302
>gi|127934|sp|P18140|NCAP_TACV NUCLEOCAPSID PROTEIN (NUCLEOPROTEIN) >gi|335152 (M20304)
nucleoprotein [Tacaribe virus]
Length = 570
Score = 32.1 bits (71), Expect = 2.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 13 NMLSKRKVEEDELTVKKQIRKXA--RDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
N L +E D L K ++K + G+L+ EL E+ ++L DK+ E+ AY
Sbjct: 65 NKLRDLNIEVDRLMSMKSVQKNTIFKVGDLARDELMELASDLEKLKDKIKRTESNGTNAY 124
Query: 187 L 189
+
Sbjct: 125 M 125
>gi|1813609 (U75379) glycoprotein precursor [Watermelon spotted wilt virus]
Length = 1121
Score = 32.1 bits (71), Expect = 2.8
Identities = 23/66 (34%), Positives = 37/66 (55%), Gaps = 10/66 (15%)
Query: 199 LTALKKGTKAISTIKNLPN--------AHSMLNEIIKFLVDKIEEKFRKDYI--FTIEKF 348
L A + G ++ +IKN+PN HS + KI + R+ Y+ FT K
Sbjct: 513 LFACRNGCNSLESIKNIPNIKFNKFYKGHSFKGNLTSL---KIANRLREGYMDSFTESKI 569
Query: 349 IEETTLEKDKEFYNSI 396
+EE + K+ +FY S+
Sbjct: 570 LEEES-AKEYKFYKSL 584
>gi|731283|sp|P39723|YAE7_YEAST HYPOTHETICAL 72.1 KD PROTEIN IN ACS1-GCV3 INTERGENIC REGION
>gi|1077481|pir||S51972 FUN42 protein - yeast
(Saccharomyces cerevisiae) >gi|595537 (U12980) Spi6p
[Saccharomyces cerevisiae]
Length = 622
Score = 32.1 bits (71), Expect = 2.8
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 115 EIEDKRKELLDKLDN-----NENTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEI 279
E+E+ +++K D+ E E ++ LI L LK+ IK N + E+
Sbjct: 343 ELEENSSSVIEKQDHLISQLKEKIESQSVLINNLEKLKE-----DIIKMKQNEKVLTKEL 397
Query: 280 -IKFLVDKIEEKFRKDYIFTIEKFIEETTLEKDKEFY 387
+ ++K++E YI +EK I + ++K +EF+
Sbjct: 398 ETQTKINKLKENNWDSYINDLEKQINDLQIDKSEEFH 434
>gi|3877245|emb|CAB07612| (Z93382) similar to XPG N-terminal domain, XPG I-region; cDNA EST
yk288a4.5 comes from this gene; cDNA EST yk418e12.5 comes
from this gene; cDNA EST yk288a4.3 comes from this gene;
cDNA EST yk373e5.5 comes from this gene; cDNA ...
Length = 1287
Score = 32.1 bits (71), Expect = 2.8
Identities = 26/91 (28%), Positives = 41/91 (44%)
Query: 166 NTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEK 345
N +E+ + F+ ++K KAI KN P + ++K + EK R+ + I+
Sbjct: 1079 NDDEDDIVKQFMADIEKEKKAIKKRKNAPQVDYNADVLLKKYAEPPPEK-RQKILEVIDD 1137
Query: 346 FIEETTLEKDKEFYNSIFYEKFYENSS*EYK 438
E EK KE E+ ENS+ E K
Sbjct: 1138 DFSEFFQEKVKENTKESVAEEKVENSNEELK 1168
>gi|3334189|sp|O32861|FTSY_MYCHO CELL DIVISION PROTEIN FTSY HOMOLOG >gi|2292927|emb|CAA72412|
(Y11726) FtsY protein [Mycoplasma hominis]
Length = 351
Score = 31.7 bits (70), Expect = 3.6
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 4 FWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEA 183
FW+N+ K ++E KKQ ++ E KE KEL+ K N NT
Sbjct: 3 FWSNLKDKLFGTKEERIAKKQ----------AKIEAKEQRQLEKELIKK--NKLNT---- 46
Query: 184 YLIVFLTALKKGTKAIST-IKNLPNAHSMLNE------------------IIKFLVDKIE 306
++ L K + + IK L N H+ ++E +++ ++++ +
Sbjct: 47 ----YIAGLSKSNSSFNEHIKELQNKHNKIDEEFFEDLEEMLIMSDISIKLVQIIINECK 102
Query: 307 EKFRKDYIFTIEKFIEETTLEKDKEFYNS 393
++ R + I T K I E +K Y S
Sbjct: 103 KEVRNENI-TDPKLINEIIADKLFTIYTS 130
>gi|2736517 (AF039052) contains similarity to helicases [Caenorhabditis
elegans]
Length = 869
Score = 31.7 bits (70), Expect = 3.6
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 13 NMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEE 180
+ +SK+ ++ L + RK R+G ++E E++EI + +LD E E E
Sbjct: 81 HQISKKYMKSKNLNLDPTSRKSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEME 136
>gi|1136225|emb|CAA62510| (X91047) hook-associated protein 2 [Xenorhabdus nematophilus]
Length = 489
Score = 31.7 bits (70), Expect = 3.6
Identities = 21/62 (33%), Positives = 37/62 (58%), Gaps = 4/62 (6%)
Query: 58 KKQIRKXARDGNLSESELKEIEDKRKELLD----KLDNNENTEEEAYLIVFLTALKKGTK 225
K+ ++ +D S E+++ +K++ ++ K D N TEEE + LT+ K GT+
Sbjct: 138 KEPMKISLKDDETSLVEIRDAINKKEGNVNASIIKADEN-GTEEEGKSYLILTSKKAGTR 196
Query: 226 AISTIK 243
+I TIK
Sbjct: 197 SIMTIK 202
>gi|2129202|pir||A64499 phosphoserine phosphatase - Methanococcus jannaschii >gi|1592204
(U67599) phosphoserine phosphatase (serB) [Methanococcus
jannaschii]
Length = 211
Score = 31.7 bits (70), Expect = 3.6
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 1 EFWNNMLSKRKVEE--DELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTE 174
+F + +++ ++E E V+++++K ++ + ++ KR LL L E
Sbjct: 11 DFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLP----IE 66
Query: 175 EEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIE 354
+ I +T + + I +KN ++++ V+KI+EK DY F ++
Sbjct: 67 KVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVK 126
Query: 355 ETTLEKDKE 381
+ L D E
Sbjct: 127 DGKLTGDVE 135
>gi|2128895|pir||D64486 hypothetical protein MJ1493 - Methanococcus jannaschii >gi|1592129
(U67590) M. jannaschii predicted coding region MJ1493
[Methanococcus jannaschii]
Length = 231
Score = 31.7 bits (70), Expect = 3.6
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 97 SESELKEIEDKRKE--------------LLDKLDNNENTEEEAYLIVFLTALKKGTKAIS 234
+E KEIEDK KE L D+ N ++ +A ++ L L++ K I
Sbjct: 83 AEEIFKEIEDKPKEEILKILKNLVVKYYLWDEFLNTDSLLNKAIGLIKLIPLER--KNIY 140
Query: 235 TIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKDKEF 384
T K+ + N + L+ I+E R D F IE T+ D+ F
Sbjct: 141 TFKSFLRNQFVKNADDEELIKVIDEMIRADLDFNNSDIIEALTIILDEIF 190
>gi|2983955 (AE000747) putative protein [Aquifex aeolicus]
Length = 227
Score = 31.7 bits (70), Expect = 3.6
Identities = 28/105 (26%), Positives = 54/105 (50%), Gaps = 10/105 (9%)
Query: 55 VKKQIRKXARDGNLSESELKEIEDKRKELL-------DKLDNNENTEEEAYLIVFLTALK 213
+KK+ +K +D +KE+ ++R++LL +KLD+ E +++ Y +K
Sbjct: 14 LKKENQKKEKDEEDCSKVIKELLEEREKLLETIRSYEEKLDSFEEEKQKMYF-----EIK 68
Query: 214 KGTKAISTIKNLPNAHSMLNEIIKFLVDKIEE---KFRKDYIFTIEKFIEETTLE 369
+ I ++ N S I L IEE +++Y +E+F++ LE
Sbjct: 69 NREEKIKELEQRLNELSEKGSISLSLSKSIEEYLSNLKEEYREKVEEFLKTFLLE 123
>gi|3758844|emb|CAB11129| (Z98551) predicted using hexExon; MAL3P6.22 (PFC0815c),
Hypothetical protein, len: 243 aa [Plasmodium
falciparum]
Length = 242
Score = 31.7 bits (70), Expect = 3.6
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 13 NMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIED---KRKELLDKLDNNENTEEEA 183
N +SK K E D+ + + + N E ELKE ED ++ ++ L NNE E+E+
Sbjct: 6 NSISKYKFENDDKRCNNKNKIIMKYMNTVEQELKEQEDQYSEKNKMNSSLSNNE-CEQES 64
Query: 184 YL 189
+L
Sbjct: 65 FL 66
>gi|3649757|emb|CAB11106| (Z98547) predicted using hexExon; MAL3P3.5 (PFC0345w), Hypothetical
protein, len: 1712 aa [Plasmodium falciparum]
Length = 1711
Score = 31.3 bits (69), Expect = 4.8
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 103 SELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEII 282
++LK+++DK L KLD I + L+K + + L N ++ L +
Sbjct: 500 NDLKKLQDKSTNFLKKLDQER--------INYRNYLEKKKSELQHMIKLSNKNAGL--AL 549
Query: 283 KFLVDKIEE----KFRKDYIFTIEKFIEETTLEKDKEFYNSIFYEKFYE 417
+ V K+E F KD + IEK +E + EF + + E Y+
Sbjct: 550 DYYVQKLESFKCLFFTKDNLIDIEKKLEVPHSKIKSEFLSFLIEEMKYD 598
>gi|4126591|dbj|BAA36620| (AB016212) complement C3-H2 [Cyprinus carpio]
Length = 1640
Score = 31.3 bits (69), Expect = 4.8
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 94 LSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLN 273
+ ES+LKE+ ++ + K +NN+ E LI++L + K + + + H ML+
Sbjct: 1391 VEESDLKELSSGKERYIQKYENNKVLSERGSLILYLDKVSHKEKEVISFR----MHQMLD 1446
>gi|418242|sp|P32999|VI01_VARV PROTEIN I1 >gi|420483|pir||S33070 I1L protein - variola virus
>gi|544817|bbs|143057 K1L product [variola virus VAR,
India-1967, Peptide, 312 aa] >gi|62332|emb|CAA47555|
(X67119) I1L COP [Variola virus]
>gi|297236|emb|CAA48996| (X69198) K1L [Variola virus]
>gi|745172|prf||2015436BL K1L gene [Variola major virus]
Length = 312
Score = 31.3 bits (69), Expect = 4.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 259 HSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEE 357
HSML I VD+ EKF++ + I +F+EE
Sbjct: 255 HSMLTNAISSEVDRYSEKFQESFYEDIAEFVEE 287
>gi|3745892 (L33180) AcMNPV orf66 [Bombyx mori nuclear polyhedrosis virus]
Length = 805
Score = 31.3 bits (69), Expect = 4.8
Identities = 37/121 (30%), Positives = 62/121 (50%), Gaps = 8/121 (6%)
Query: 10 NNMLSKRKVEEDELTVK-KQIRKXARDGNLSESE----LKEIEDKRKEL---LDKLDNNE 165
N + + + DEL +K K++ + + +SE +K++E +EL + KL +E
Sbjct: 336 NERVETMQSQYDELDLKYKEVFEDKSEFAQQKSENVQKIKQLERSNRELNGTVQKL-RDE 394
Query: 166 NTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEK 345
N E I+ L+KG + N + LNE I L ++E F K+Y+ T+
Sbjct: 395 NAE-----ILSEIQLQKGD-----LDEYKNTNRQLNEDIHRLKKRMESTFDKNYVKTLND 444
Query: 346 FIEETTLEK 372
IE +LEK
Sbjct: 445 KIE--SLEK 451
>gi|1255425 (U53154) No definition line found [Caenorhabditis elegans]
Length = 390
Score = 31.3 bits (69), Expect = 4.8
Identities = 18/52 (34%), Positives = 32/52 (60%)
Query: 25 KRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEE 180
K+K ++DE KK+ +K +D + E E + +DK+K+ DK D +E E++
Sbjct: 265 KKKNDDDE-EDKKKDKKKKKDDDDDEDEDNKKKDKKKKKDDKDDEDEEKEKD 315
>gi|3170500 (AF052873) APETALA3 homolog PnAP3-1 [Papaver nudicaule]
Length = 221
Score = 31.3 bits (69), Expect = 4.8
Identities = 21/68 (30%), Positives = 30/68 (43%)
Query: 55 VKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTALKKGTKAIS 234
+KK+IR+ +LSE L E+ K L+D D N + T+ K+
Sbjct: 76 LKKEIRQRTGQDDLSELSLDEMRILEKNLIDSADIVRNRKNHVLNSHTETSKKRNKAQEE 135
Query: 235 TIKNLPNA 258
T KNL A
Sbjct: 136 TYKNLVRA 143
>gi|266889|sp|Q00798|RBP1_PLAVB RETICULOCYTE BINDING PROTEIN 1 PRECURSOR >gi|160626 (M88097)
reticulocyte binding protein 1 [Plasmodium vivax]
Length = 2869
Score = 30.9 bits (68), Expect = 6.2
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 94 LSESELKEIEDKRKELLDKLD----------NNENTEEEAYLIVFLTALKKGTKAISTIK 243
+ ESE + I+DK +L D +D NN Y ++ + ++ I
Sbjct: 541 IPESEDETIDDKINDLQDLIDQMKEYKDEIVNNSEFISNRYKNIYENLKETYETELNDIG 600
Query: 244 NLPNAHSMLNEIIKFLVDKIEEKFRKD-YIFTIEKFIEETTLEKDKEFYNSIFYEK 408
L N S +N + + EK + D + T+EKF +E K+K + I +EK
Sbjct: 601 KLENDTSKVNFYLMQIRKINTEKTKIDESLQTVEKFYKEILDSKEKIYELKIEFEK 656
>gi|3114907|emb|CAA74243| (Y13926) heat shock protein 70 [Rhabdocalyptus dawsoni]
Length = 655
Score = 30.9 bits (68), Expect = 6.2
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E K I + LSE +++++E+ K L+ LD+N+ +E +
Sbjct: 535 AKNNLESYTFQAKNAIEESKAREKLSEEDVRKVEETVKNALNWLDSNQTASKEEF 589
>gi|731380|sp|P32639|BRR2_YEAST PRE-MRNA SPLICING HELICASE BRR2 >gi|1077724|pir||S50675
hypothetical protein YER172c - yeast (Saccharomyces
cerevisiae) >gi|1699380|bbs|178658 Rss1p=ATP-dependent
RNA helicase homolog [Saccharomyces cerevisiae, Peptide
Mutant, 2163 aa] >gi|603413 (U18922) Brr2p: Putative
ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 2163
Score = 30.9 bits (68), Expect = 6.2
Identities = 27/106 (25%), Positives = 50/106 (46%), Gaps = 1/106 (0%)
Query: 58 KKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEE-AYLIVFLTALKKGTKAIS 234
K+ + A D E E+ E+ + L ++++NE+ +EE Y V + + KK +A+
Sbjct: 204 KQAVAILADDEKSDEEEVTEMSNNANVLGGEINDNEDDDEEYDYNDVEVNSKKKNKRALP 263
Query: 235 TIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKD 375
I+ N+IIK L D I++I++F + L +
Sbjct: 264 NIE---------NDIIK-LSDSKTSNIESVPIYSIDEFFLQRKLRSE 300
>gi|283481|pir||A42771 reticulocyte-binding protein 1 - Plasmodium vivax
Length = 2829
Score = 30.9 bits (68), Expect = 6.2
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 94 LSESELKEIEDKRKELLDKLD----------NNENTEEEAYLIVFLTALKKGTKAISTIK 243
+ ESE + I+DK +L D +D NN Y ++ + ++ I
Sbjct: 501 IPESEDETIDDKINDLQDLIDQMKEYKDEIVNNSEFISNRYKNIYENLKETYETELNDIG 560
Query: 244 NLPNAHSMLNEIIKFLVDKIEEKFRKD-YIFTIEKFIEETTLEKDKEFYNSIFYEK 408
L N S +N + + EK + D + T+EKF +E K+K + I +EK
Sbjct: 561 KLENDTSKVNFYLMQIRKINTEKTKIDESLQTVEKFYKEILDSKEKIYELKIEFEK 616
>gi|1076791|pir||S49818 calcium-binding protein - maize >gi|2119370|pir||S58170
Calreticulin precursor - maize >gi|577612|emb|CAA86728|
(Z46772) calcium-binding protein [Zea mays]
>gi|927572|emb|CAA61939| (X89813) Calreticulin precursor
[Zea mays] >gi|1587033|prf||2205314A calreticulin [Zea
mays]
Length = 421
Score = 30.9 bits (68), Expect = 6.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 1 EFWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEE 180
E W K DE KK+ A+ G+ + +L++ ED K DK D++ ++
Sbjct: 352 ETWGKHKEAEKAAFDEAEKKKEEEDAAKGGDDEDDDLEDEEDDEKADEDKADSDAEDSKD 411
Query: 181 A 183
+
Sbjct: 412 S 412
>gi|2462783 (U73162) M-protein [Streptococcus equi]
Length = 534
Score = 30.9 bits (68), Expect = 6.2
Identities = 20/58 (34%), Positives = 35/58 (59%), Gaps = 6/58 (10%)
Query: 19 LSKRKVEEDELT--VKKQIRKXARDGNLSESELKEIEDKR----KELLDKLDNNENTEEE 180
L+K K E LT K + + ++ N ++EL + ++K KEL DKL N E + ++
Sbjct: 180 LTKAKDERQALTESFNKTLSRSTKEYNKLKTELAKEKEKAAKMTKELADKLSNAEASRDK 239
Query: 181 AYLI 192
A+ +
Sbjct: 240 AFAV 243
>gi|3861050|emb|CAA14950| (AJ235272) CELL SURFACE ANTIGEN (sca4) [Rickettsia prowazekii]
Length = 785
Score = 30.9 bits (68), Expect = 6.2
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 13 NMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRK--ELLDKLDNNENTEEEAY 186
N +SKR +E+ + ++DGNL E K+ E +K EL+ DN +TEE+
Sbjct: 614 NDISKRTIEK----INNLRAMLSQDGNLKTFEEKKDEATKKVDELVKAFDNKSSTEEQQN 669
Query: 187 LI 192
I
Sbjct: 670 FI 671
>gi|2494189|sp|Q83948|DPOL_NPVOP DNA POLYMERASE >gi|1063688 (U39145) DNA polymerase [Orgyia
pseudotsugata nuclear polyhedrosis virus] >gi|1911316
(U75930) DNA polymerase [Orgyia pseudotsugata nuclear
polyhedrosis virus]
Length = 985
Score = 30.9 bits (68), Expect = 6.2
Identities = 17/76 (22%), Positives = 39/76 (50%)
Query: 151 LDNNENTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYI 330
LD N ++AY + A T IS +K++ ++ +NE+++ D+ ++ + Y
Sbjct: 852 LDMQGNVTQKAYPLRLFDAQ---TMRISWLKHMTILNTFMNELLEIFGDEHKDALAECYS 908
Query: 331 FTIEKFIEETTLEKDK 378
+EK+++ +K +
Sbjct: 909 AILEKYMQHQAYDKKR 924
>gi|731153|sp|P03691|VR2B_BPT4 RIIB PROTEIN >gi|2145003|pir||Z2BPB4 rIIB protein - phage T4
>gi|2648162|dbj|BAA23635| (D16359) rIIB [coliphage T4]
Length = 312
Score = 30.9 bits (68), Expect = 6.2
Identities = 21/54 (38%), Positives = 30/54 (54%), Gaps = 3/54 (5%)
Query: 235 TIKNLPNAHSMLNEIIKFLV-DKIEEKFRKDYI-FTIEKFIE-ETTLEKDKEFYNSI 396
T PN HS EI+ LV DK+EE +K + +EK+I + +E FY +I
Sbjct: 96 TYNATPNTHSNFQEILNLLVADKLEEAAQKINVRRAVEKYISGDVRIEGGSLFYQNI 152
>gi|2132149|pir||S63463 hypothetical protein YPL019c - yeast (Saccharomyces cerevisiae)
>gi|1039458 (U36624) Lpb12p [Saccharomyces cerevisiae]
Length = 835
Score = 30.9 bits (68), Expect = 6.2
Identities = 20/69 (28%), Positives = 42/69 (59%), Gaps = 1/69 (1%)
Query: 19 LSKRKVEEDELTVKKQIRKXA-RDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIV 195
L K+K D+L +++ K + DG +E + ++ ++ R + D L+++E+++EE +
Sbjct: 572 LQKQKSIHDKLDNMRRLSKISVPDGKTTERQGQKDQNTRHVIAD-LEDHESSDEEGTALP 630
Query: 196 FLTALKKGTK 225
+A+KKG K
Sbjct: 631 KKSAVKKGKK 640
>gi|477238|pir||A48439 heat shock protein Hsp70 - Entamoeba histolytica >gi|158956
(M84652) heat shock protein 70, hsp70A2 [Entamoeba
histolytica]
Length = 656
Score = 30.9 bits (68), Expect = 6.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K K+E +VK + + D ++ + IE+ KE LD +DNN+N E Y
Sbjct: 541 AKNKLENFCYSVKNTLSEQFAD-KIAAEDKTTIENIVKETLDWIDNNQNASTEEY 594
>gi|465073|sp|P33819|VE06_VARV PROTEIN E6 >gi|419303|pir||I36841 E6R protein - variola virus
(strain India-1967) >gi|297228|emb|CAA48988| (X69198)
E6R [Variola virus] >gi|438965 (L22579) homolog of
vaccinia virus CDS E6R; putative [variola major virus]
>gi|745164|prf||2015436BC E6R gene [Variola major virus]
Length = 567
Score = 30.5 bits (67), Expect = 8.2
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 61 KQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTALKKGTKAISTI 240
K I K DG L+ L ++D + +LL K+ N+ E+ V ST
Sbjct: 456 KNILKYYLDGQLARLGLV-LDDYKGDLLVKMINHLKFVEDVSAFV----------RFSTD 504
Query: 241 KNLPNAHSMLNEII---KFLVDKIEEKFRKDYIFTIEKFIEET 360
KN S++N I+ + + +KF +D ++ +EKF++++
Sbjct: 505 KNPSVLPSLINTILASYNISIIVLFQKFLRDNLYHVEKFLDKS 547
>gi|544825|bbs|143045 E6R product [variola virus VAR, India-1967, Peptide, 567 aa]
Length = 567
Score = 30.5 bits (67), Expect = 8.2
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 61 KQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFLTALKKGTKAISTI 240
K I K DG L+ L ++D + +LL K+ N+ E+ V ST
Sbjct: 456 KNILKYYLDGQLARLGLV-LDDYKGDLLVKMINHLKFVEDVSAFV----------RFSTD 504
Query: 241 KNLPNAHSMLNEII---KFLVDKIEEKFRKDYIFTIEKFIEET 360
KN S++N I+ + + +KF +D ++ +EKF++++
Sbjct: 505 KNPSVLPSLINTILASYNISIIVLFQKFLRDNLYHVEKFLDKS 547
>gi|1695717|dbj|BAA13947| (D89341) luminal binding protein [Arabidopsis thaliana]
Length = 669
Score = 30.5 bits (67), Expect = 8.2
Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 1/55 (1%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKE-IEDKRKELLDKLDNNENTEEEAY 186
++ +E +K Q+ + + E + KE IE KE L+ LD N+N+E+E Y
Sbjct: 569 ARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEY 624
>gi|2688426 (AE001153) B. burgdorferi predicted coding region BB0512 [Borrelia
burgdorferi]
Length = 2166
Score = 30.5 bits (67), Expect = 8.2
Identities = 44/124 (35%), Positives = 56/124 (44%), Gaps = 10/124 (8%)
Query: 40 EDELTVKKQIRKXARDGNLSESELKEIEDK--------RKELLDKLDNNENTEEEAYLIV 195
EDEL KK ++ + +S L+E DK KELL ++DNN E
Sbjct: 1761 EDEL--KKSLKHSTSEIETIKSGLQEQIDKFEVEFKKNHKELLKEVDNNILELESK---- 1814
Query: 196 FLTALKKGTKAISTIK-NLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEE-TTLE 369
L + K IS IK NL S L + DKI F IE IE L+
Sbjct: 1815 ILNCDVQFNKFISEIKDNLVEYKSDLRAEFEDSYDKIN--------FQIENQIENFKKLD 1866
Query: 370 KDKEFYNSIFYEKF 411
+ E NSIF E +
Sbjct: 1867 SELEKNNSIFLEAY 1880
>gi|507130|emb|CAA51437| (X72932) emm64 [Streptococcus pyogenes]
Length = 528
Score = 30.5 bits (67), Expect = 8.2
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 1 EFWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKE---IEDKRKELLDKLDNNENT 171
+FW N + K+E+D KKQ+R + G SE L+ + RK+ +++ E T
Sbjct: 135 QFWKNRI---KIEQDLSEQKKQLRYTSGRGYNSEIALRVSSLVNYSRKKTNKEVEMAELT 191
Query: 172 ----EEEAYLIVFLTALKKG----TKAISTIKNLPNAHSMLNEI-IKFLVDKIEE 309
E+EA L L K ++ + ++ NA L EI + F V K +E
Sbjct: 192 IQISEKEAELDSIDELLSANQAEIDKLLAQLTDIQNAKEALTEILVAFKVKKYKE 246
>gi|1363430|pir||S57835 IgG-binding protein emmL precursor - Streptococcus pyogenes (strain
64/14)
Length = 528
Score = 30.5 bits (67), Expect = 8.2
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 1 EFWNNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKE---IEDKRKELLDKLDNNENT 171
+FW N + K+E+D KKQ+R + G SE L+ + RK+ +++ E T
Sbjct: 135 QFWKNRI---KIEQDLSEQKKQLRYTSGRGYNSEIALRVSSLVNYSRKKTNKEVEMAELT 191
Query: 172 ----EEEAYLIVFLTALKKG----TKAISTIKNLPNAHSMLNEI-IKFLVDKIEE 309
E+EA L L K ++ + ++ NA L EI + F V K +E
Sbjct: 192 IQISEKEAELDSIDELLSANQAEIDKLLAQLTDIQNAKEALTEILVAFKVKKYKE 246
>gi|2688156 (AE001136) single-stranded-DNA-specific exonuclease (recJ)
[Borrelia burgdorferi]
Length = 708
Score = 30.5 bits (67), Expect = 8.2
Identities = 28/114 (24%), Positives = 48/114 (41%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
N ++ K ++E L + I +DGN+ D ++ L++ E+
Sbjct: 375 NRIILKVGLKEIALRERMSINYLLKDGNILTKPNITSTDIAYKIAPILNSTGRLEKADIA 434
Query: 190 IVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFI 351
I FL T I+ I+N +NE+ K+ +K K+ IF +KFI
Sbjct: 435 INFLL-----TNDINQIENKFKEIKEINELRKYKEEKAWNSHNKNTIFKNDKFI 483
>gi|3878319|emb|CAA94285| (Z70284) cDNA EST EMBL:T01421 comes from this gene; cDNA EST
yk413b1.5 comes from this gene [Caenorhabditis elegans]
Length = 535
Score = 30.5 bits (67), Expect = 8.2
Identities = 33/112 (29%), Positives = 52/112 (45%), Gaps = 12/112 (10%)
Query: 43 DELTVKKQIRKXARDGNLSESELKEI----------EDKRKELLDKLDNNENTEEEAYLI 192
D+ T K+ + + + DG+ + E ++ KR +L D D N+ EEE + I
Sbjct: 44 DKKTTKRIVFEDSDDGDDQDEETEKTAANGEKKTSRSSKRPKLFDSEDENDKDEEEDFEI 103
Query: 193 VFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIE--ETTL 366
+ KG K L + S N +F +D + D +E+ E E L
Sbjct: 104 KNRHSGPKGEK-------LMHLESRFNSDPRFKLDDKFAESDSDEDGNMEQSSEKQEMKL 156
Query: 367 EKDK 378
EKDK
Sbjct: 157 EKDK 160
>gi|3329314 (AE001357) Polyribonucleotide Nucleotidyltransferase [Chlamydia
trachomatis]
Length = 695
Score = 30.5 bits (67), Expect = 8.2
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 178 EAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEE 357
+ Y+ A++ KAI KN M ++ + D I EKF K F ++ +E+
Sbjct: 208 QTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIREKFEKALSFRDKEALEQ 267
Query: 358 TTLEKDKEFYNSIFYEK 408
+ E ++ ++ E+
Sbjct: 268 ASKELEESVIANLVQEE 284
>gi|3093478 (AF012927) fibrinogen-binding protein [Streptococcus equi]
Length = 534
Score = 30.5 bits (67), Expect = 8.2
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 19 LSKRKVEEDELT--VKKQIRKXARDGNLSESELKEIEDKR----KELLDKLDNNENTEEE 180
L K K E LT K + + ++ N ++EL + ++K KEL DKL N E + ++
Sbjct: 180 LQKAKDERQALTESFNKTLSRSTKEYNKLKTELAKEKEKAAKMTKELADKLSNAEASRDK 239
Query: 181 AYLI 192
A+ +
Sbjct: 240 AFAV 243
>gi|729525|sp|P39738|FLID_BACSU FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) (FILAMENT CAP PROTEIN)
>gi|2126936|pir||I40397 fliD protein - Bacillus subtilis
>gi|499381|emb|CAA83248| (Z31376) FliD [Bacillus
subtilis]
Length = 498
Score = 30.5 bits (67), Expect = 8.2
Identities = 21/85 (24%), Positives = 36/85 (41%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ ++ + D+LT KKQ + RD +E+ K KEL D + N T Y
Sbjct: 19 SKLMQTERAPLDKLTQKKQTLEWQRDS------YREVNSKIKELQDYMSKNTLTYPSTYQ 72
Query: 190 IVFLTALKKGTKAISTIKNLPNAHS 264
+T+ + + + PN+ S
Sbjct: 73 SKTVTSSNESVLTATGSVSAPNSSS 97
>gi|1346410|sp|P08928|LAM0_DROME LAMIN DM0 >gi|441286|emb|CAA30259| (X07278) lamin precursor Dm0 (AA
1-622) [Drosophila melanogaster]
Length = 622
Score = 30.5 bits (67), Expect = 8.2
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 25 KRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLD--NNENTEEEAYLIVF 198
K E + L ++ + ARD +E ++K + ++ +EL +KLD E T E + ++
Sbjct: 101 KNIFEAELLETRRLLDDTARDRARAEIDIKRLWERNEELKNKLDKKTKECTTAEGNVRMY 160
Query: 199 LT-ALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKD 375
+ A + K + + LNE +K L E+ RK + T + +ET D
Sbjct: 161 ESRANELNNKYNQANADRKKLNEDLNEALKEL-----ERLRKQFEETRKNLEQETLSRVD 215
Query: 376 KE 381
E
Sbjct: 216 LE 217
>gi|2128716|pir||H64447 hypothetical protein MJ1185 - Methanococcus jannaschii >gi|1591812
(U67559) putative aldehyde ferredoxin oxidoreductase
(aor) [Methanococcus jannaschii]
Length = 622
Score = 30.5 bits (67), Expect = 8.2
Identities = 27/94 (28%), Positives = 41/94 (42%), Gaps = 1/94 (1%)
Query: 34 VEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDK-LDNNENTEEEAYLIVFLTAL 210
++E+EL +KK I + N + E++EI E K + N + Y I+ L
Sbjct: 372 LKEEELNIKKPIFDYKKITNDDDEEIREISKHNAEQAIKFMHNLAENSNDLYKILSLGKR 431
Query: 211 KKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKF 315
K A +LNE K V+KI +KF
Sbjct: 432 K--------------AAKILNERFKSRVNKIGKKF 452
>gi|1762345 (U56901) flagellar hook-associated protein 2 [Bacillus subtilis]
>gi|2636060|emb|CAB15551.1| (Z99122) flagellar
hook-associated protein 2 (HAP2) [Bacillus subtilis]
Length = 498
Score = 30.5 bits (67), Expect = 8.2
Identities = 21/85 (24%), Positives = 36/85 (41%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYL 189
+ ++ + D+LT KKQ + RD +E+ K KEL D + N T Y
Sbjct: 19 SKLMQTERAPLDKLTQKKQTLEWQRDS------YREVNSKIKELQDYMSKNTLTYPSTYQ 72
Query: 190 IVFLTALKKGTKAISTIKNLPNAHS 264
+T+ + + + PN+ S
Sbjct: 73 SKTVTSSNESVLTATGSVSAPNSSS 97
>gi|2292986|emb|CAA04133| (AJ000496) cyclic nucleotide-gated channel beta subunit [Rattus
norvegicus]
Length = 1339
Score = 30.5 bits (67), Expect = 8.2
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 25 KRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLI---- 192
K + EE+E +K+ ++ + E E KE E+K ++ ++ + E EEE ++
Sbjct: 431 KEEKEEEEGKEEKEEKEEKEEKEEEEKEEKEEEEKEEKEEEEEEEEEEEEEEPIVLLDSC 490
Query: 193 ------VFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIE 354
V L++ ++I+ LP E K ++ EE+ K+ E
Sbjct: 491 LVVQADVDQCQLERAQPETASIQELPEEEEEKEEEKKEEEEEKEEEEEKE---------E 541
Query: 355 ETTLEKDKEFYNS 393
E E++ E NS
Sbjct: 542 EEEKEEEGEATNS 554
>gi|462329|sp|P34931|HS7H_HUMAN HEAT SHOCK 70 KD PROTEIN 1-HOM (HSP70-HOM) >gi|483005|pir||B45871
heat shock protein HSP70-Hom - human >gi|188492 (M59829)
heat shock-induced protein [Homo sapiens]
Length = 641
Score = 30.5 bits (67), Expect = 8.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E +K + G +SES+ +I DK ELL L+ N+ E++ +
Sbjct: 540 AKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEF 594
>gi|1351624|sp|Q09863|YAFA_SCHPO HYPOTHETICAL 122.9 KD PROTEIN C29E6.10C IN CHROMOSOME I
>gi|1044936|emb|CAA91432| (Z66525) unknown
[Schizosaccharomyces pombe]
Length = 1085
Score = 30.5 bits (67), Expect = 8.2
Identities = 19/56 (33%), Positives = 31/56 (54%), Gaps = 4/56 (7%)
Query: 25 KRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKR----KELLDKLDNNENTEEEAYLI 192
K+K +E E +KKQ ++ R+ E L+E E+KR ++ +KLD E L+
Sbjct: 665 KQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELL 724
>gi|3461866|dbj|BAA32521| (D85730) Heat shock protein 70 testis variant [Homo sapiens]
Length = 641
Score = 30.5 bits (67), Expect = 8.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E +K + G +SES+ +I DK ELL L+ N+ E++ +
Sbjct: 540 AKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEF 594
>gi|4529894|gb|AAD21817| (AF134726) HSP70-HOM [Homo sapiens]
Length = 641
Score = 30.5 bits (67), Expect = 8.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAY 186
+K +E +K + G +SES+ +I DK ELL L+ N+ E++ +
Sbjct: 540 AKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEF 594
>gi|85042|pir||A29965 lamin Dm-0 precursor - fruit fly (Drosophila melanogaster)
Length = 621
Score = 30.5 bits (67), Expect = 8.2
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 25 KRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLD--NNENTEEEAYLIVF 198
K E + L ++ + ARD +E ++K + ++ +EL +KLD E T E + ++
Sbjct: 100 KNIFEAELLETRRLLDDTARDRARAEIDIKRLWERNEELKNKLDKKTKECTTAEGNVRMY 159
Query: 199 LT-ALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIEETTLEKD 375
+ A + K + + LNE +K L E+ RK + T + +ET D
Sbjct: 160 ESRANELNNKYNQANADRKKLNEDLNEALKEL-----ERLRKQFEETRKNLEQETLSRVD 214
Query: 376 KE 381
E
Sbjct: 215 LE 216
>gi|2293014|emb|CAA71688| (Y10687) purine NTPase [Sulfolobus acidocaldarius]
Length = 886
Score = 30.5 bits (67), Expect = 8.2
Identities = 17/56 (30%), Positives = 32/56 (56%)
Query: 10 NNMLSKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEE 177
+++ S+ V E++L KK+ K ++ E + +EIE ++KEL +K E E+
Sbjct: 305 DSLKSQINVVENDLKRKKEKLKRKKELEEKEKQYEEIEKRKKELEEKEKQYEEIEK 360
>gi|2598618|emb|CAA04342| (AJ000864) histidine kinase [Streptococcus anginosus]
Length = 448
Score = 30.5 bits (67), Expect = 8.2
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 148 KLDNNENTEEEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEI-------IKFLVDKIE 306
K+D EN + + ++F+ L + +S +KNL + SM+ I I F + I
Sbjct: 150 KIDFKENIVQLNFYLLFIHLLLNVSHWLSNMKNLNSFSSMIATICFLMFMSILFYLQSIR 209
Query: 307 EKFRKDYIFTIEKFIEETTLEKDKEFYNSIFYE 405
EK+ K+ +K E+ L+K + S++ E
Sbjct: 210 EKYEKEEQIK-QKEREQLQLQKYTDEIVSLYNE 241
>gi|4097980 (U72655) surface protein C [Streptococcus pneumoniae]
Length = 929
Score = 30.5 bits (67), Expect = 8.2
Identities = 33/120 (27%), Positives = 59/120 (48%), Gaps = 6/120 (5%)
Query: 22 SKRKVEEDELTVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTEEEAYLIVFL 201
+KRK EE E + +K + E+++ E+E + + L +L + ++ E YL L
Sbjct: 487 AKRKAEESEKKAAEAKQKVDAEEYALEAKIAELEYEVQRLEKELKEIDESDSEDYLKEGL 546
Query: 202 TA---LKKGTK--AISTIKNLPNAHSMLN-EIIKFLVDKIEEKFRKDYIFTIEKFIEETT 363
A K TK +S ++ L + L+ EI K V + + + ++ +E+TT
Sbjct: 547 RAPLQSKLDTKKAKLSKLEELSDKIDELDAEIAKLEVQLKDAEGNNNVEAYFKEGLEKTT 606
Query: 364 LEKDKE 381
EK E
Sbjct: 607 AEKKAE 612
>gi|1722855|sp|P50532|XCPC_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-C >gi|1079281|pir||A55094
chromosomal protein XCAP-C - African clawed frog
>gi|563812 (U13673) XCAP-C [Xenopus laevis]
Length = 1290
Score = 30.5 bits (67), Expect = 8.2
Identities = 36/145 (24%), Positives = 66/145 (44%), Gaps = 6/145 (4%)
Query: 13 NMLSKRKVEEDEL------TVKKQIRKXARDGNLSESELKEIEDKRKELLDKLDNNENTE 174
++L K+K +E+E ++KK+ + + + E EL EI E K+D + +E
Sbjct: 441 DLLEKQKEKEEEKLKNVMDSLKKETQGLQEEKEVKEKELMEISKTVNEARSKMDVAQ-SE 499
Query: 175 EEAYLIVFLTALKKGTKAISTIKNLPNAHSMLNEIIKFLVDKIEEKFRKDYIFTIEKFIE 354
+ YL +AL + KA K N S + + + ++E K KD E
Sbjct: 500 LDIYLSRHNSALSQLNKA----KEALNTASATLKERRAAIKELETKLPKD---------E 546
Query: 355 ETTLEKDKEFYNSIFYEKFYENSS*EYKQYI 447
+++KE + + E +N E +Q +
Sbjct: 547 GDLKKREKELESLVSEEGNIKNQVRELRQKV 577
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70757204
Number of Sequences: 369800
Number of extensions: 1115534
Number of successful extensions: 6631
Number of sequences better than 10.0: 196
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 6522
Number of HSP's gapped (non-prelim): 188
length of query: 173
length of database: 113,023,754
effective HSP length: 52
effective length of query: 120
effective length of database: 93794154
effective search space: 11255298480
effective search space used: 11255298480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)