BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2X-6R
         (517 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|480485|pir||S36956 cytochrome-c oxidase (EC 1.9.3.1) chain II...    31  6.2
gi|4049650 (AF063866) ORF MSV011 leucine rich repeat gene family...    31  6.2


>gi|480485|pir||S36956 cytochrome-c oxidase (EC 1.9.3.1) chain III - Herpetomonas
           mariadeanei mitochondrion (SGC6) >gi|3559762 (L10847)
           cytochrome oxidase subunit III [Herpetomonas
           mariadeanei]
           Length = 288
           
 Score = 30.9 bits (68), Expect = 6.2
 Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 3/53 (5%)

Query: 187 CGMYRNIIYNRTFIRC--HGLLYFVIXKILLVKEILA*KFYYILEVAC-FENVFSI 29
           C ++R I    +FIRC  +  L+FVI + +L     A  F Y+L + C F  VF +
Sbjct: 70  CDIFRGIFDFVSFIRCLQYCFLWFVISEFVLFVTFFAVVFGYVLFLCCEFAFVFCL 125



>gi|4049650 (AF063866) ORF MSV011 leucine rich repeat gene family protein,
           similar to Amsacta moorei entomopoxvirus Q3 ORF
           SW:P28854 [Melanoplus sanguinipes entomopoxvirus]
           Length = 505
           
 Score = 30.9 bits (68), Expect = 6.2
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)

Query: 167 NIPIHTTSLNHYKTPFIRI-NIGFINTLPFNFKK-------MNFQPKKPSTIKXPHLP 316
           NIPIH +  +HYK+ +I+I N    N   F F +       +N    K S I   +LP
Sbjct: 39  NIPIHYSYFSHYKSKYIKILNCEKCNIKDFKFLEKLSNLEILNISDNKNSNISKCNLP 96


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91836711
Number of Sequences: 369800
Number of extensions: 1739455
Number of successful extensions: 2949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2948
Number of HSP's gapped (non-prelim): 3
length of query: 172
length of database: 113023754
effective HSP length: 52
effective length of query: 119
effective length of database: 93794154
effective search space: 11161504326
effective search space used: 11161504326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)