BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2X-4R
(370 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2920563 (AF019229) DNA dependent reverse transcriptase [Sprag... 143 2e-59
gi|1402848 (U60529) pol-like protein [Ceratitis capitata] 54 1e-14
gi|102939|pir||B36329 hypothetical protein 2 - cabbage looper tr... 47 3e-12
gi|1226168 (M32662) ORF B (bases 1850-5560) first start codon at... 47 3e-12
gi|2791289|emb|CAA04050| (AJ000387) protease [Drosophila melanog... 46 9e-12
gi|4165194|emb|CAA08807| (AJ009736) Pol protein [Drosophila mela... 48 4e-11
gi|3493214 (AF056940) pol polyprotein [Drosophila virilis] 42 6e-10
gi|130405|sp|P04323|POL3_DROME RETROVIRUS-RELATED POL POLYPROTEI... 45 1e-09
gi|422418|pir||S34639 pol protein - fruit fly (Drosophila ananas... 43 5e-09
gi|4539021|emb|CAB39733| (AJ133521) protease, reverse transcript... 41 7e-09
gi|1945323|emb|CAA97115| (Z72894) TY3B [Saccharomyces cerevisiae... 42 1e-08
gi|2133196|pir||S69842 TyB protein - yeast (Saccharomyces cerevi... 42 1e-08
gi|1084606|pir||S53577 TyB protein - yeast (Saccharomyces cerevi... 42 1e-08
gi|536873 (M34549) POL3 gene product [Saccharomyces cerevisiae] 42 1e-08
gi|173088 (M23367) has homology to retroviral pol genes; ORF2 TY... 42 1e-08
gi|1326016|emb|CAA86713| (Z46728) YI9910.15, incomplete TY3-2 or... 42 1e-08
gi|4539660|gb|AAD22153|AF061282_6 (AF061282) polyprotein [Sorghu... 41 2e-08
gi|481446|pir||S38635 blastopia polyprotein - fruit fly (Drosoph... 47 4e-08
gi|2133581|pir||S68306 pol polyprotein, truncated - red flour be... 40 4e-08
gi|4063760 (AC005561) putative POL3 protein [Arabidopsis thaliana] 44 5e-08
gi|4539665|gb|AAD22158|AF061282_11 (AF061282) polyprotein [Sorgh... 39 7e-08
gi|1085915|pir||S52564 hypothetical protein 2 (clone Db314) - fr... 41 7e-08
gi|896244|bbs|160066 (S75260) pol [Drosophila buzzatii, BU-24, P... 41 7e-08
gi|130398|sp|P20825|POL2_DROME RETROVIRUS-RELATED POL POLYPROTEI... 38 9e-08
gi|4481822|emb|CAB38458| (AL035631) BACN32G13.a [Drosophila mela... 38 9e-08
gi|1764013|emb|CAB06047| (Z83760) COS41.3 [Ciona intestinalis] 38 2e-07
gi|522302 (L35053) endonuclease [Magnaporthe grisea] 46 1e-06
gi|1360613|emb|CAA65970| (X97304) ORF V [Strawberry vein banding... 43 1e-06
gi|3688328|emb|CAA12930| (AJ228325) reverse transcriptase [Ginkg... 46 1e-06
gi|130594|sp|P19199|POL_COYMV PUTATIVE POLYPROTEIN [CONTAINS: CO... 40 3e-06
gi|93553|pir||S11480 hypothetical protein 4 - Commelina yellow m... 40 3e-06
gi|321453|pir||S27938 hypothetical protein 3 - sugarcane bacilli... 43 3e-06
gi|85056|pir||S02021 micropia polyprotein - fruit fly (Drosophil... 37 1e-05
gi|1030731|emb|CAA32198| (X14037) polyprotein [Drosophila melano... 37 1e-05
gi|3273747 (AF061575) reverse transcriptase [Candida albicans] 37 1e-05
gi|557718 (U15406) gag, pol and env protein precursor [Caenorhab... 36 3e-05
gi|1353074|sp|P34431|YL51_CAEEL HYPOTHETICAL PROTEIN F44E2.1 IN ... 36 3e-05
gi|331554 (M90543) reverse transcriptase [Cauliflower mosaic virus] 37 5e-05
gi|840738|emb|CAA55974| (X79465) ORF V [Cauliflower mosaic virus] 37 5e-05
gi|130590|sp|P03555|POL_CAMVC ENZYMATIC POLYPROTEIN [CONTAINS: A... 37 5e-05
gi|130592|sp|P03554|POL_CAMVS ENZYMATIC POLYPROTEIN [CONTAINS: A... 37 5e-05
gi|400820|sp|Q02964|POL_CAMVE ENZYMATIC POLYPROTEIN [CONTAINS: A... 37 5e-05
gi|484342|pir||JN0497 hypothetical 78.7K protein - cauliflower m... 37 5e-05
gi|130591|sp|P03556|POL_CAMVD ENZYMATIC POLYPROTEIN [CONTAINS: A... 37 5e-05
gi|1905852 (U89994) reverse transcriptase polyprotein [Drosophil... 46 8e-05
gi|3183637|emb|CAA05264| (AJ002234) polyprotein, cleavage produc... 37 8e-05
gi|2995405|emb|CAA73042| (Y12432) polyprotein [Ananas comosus] 34 8e-05
gi|555885 (U13988) reverse transcriptase [Peanut chlorotic strea... 42 8e-05
gi|130669|sp|P15629|POL_SOCMV ENZYMATIC POLYPROTEIN [CONTAINS: A... 33 1e-04
gi|266827|sp|Q00962|POL_CAMVN ENZYMATIC POLYPROTEIN [CONTAINS: A... 37 1e-04
gi|2146903|pir||S72396 hypothetical protein 2 - fruit fly (Droso... 45 2e-04
gi|2146902|pir||S64734 hypothetical protein 2 - fruit fly (Droso... 45 2e-04
gi|4581164|gb|AAD24647|AC006220_3 (AC006220) putative polyprotei... 34 2e-04
gi|130600|sp|P09523|POL_FMVD ENZYMATIC POLYPROTEIN [CONTAINS: AS... 34 2e-04
gi|3319351 (AF077407) contains similarity to reverse transcripta... 45 3e-04
gi|283734|pir||S26840 retrovirus-related pol polyprotein - fruit... 45 3e-04
gi|130407|sp|P10394|POL4_DROME RETROVIRUS-RELATED POL POLYPROTEI... 38 3e-04
gi|665934 (U20341) ORF III [Cassava vein mosaic virus] >gi|13998... 33 3e-04
gi|331593 (M32815) reverse transcriptase [Cauliflower mosaic virus] 34 3e-04
gi|347871 (L14546) polyprotein [Cacao swollen shoot virus] 37 4e-04
gi|509002 (M10376) ORF5; putative [Cauliflower mosaic virus] 34 4e-04
gi|1542877|emb|CAA65152| (X95908) orf [Drosophila melanogaster] 32 5e-04
gi|3810595 (AC005398) putative reverse-transcriptase [Arabidopsi... 43 7e-04
gi|4263052|gb|AAD15321| (AC005142) putative reverse transcriptas... 43 7e-04
gi|1335769 (U26458) gag-pol polyprotein [Snakehead retrovirus] 33 8e-04
gi|4544430|gb|AAD22339|AC006955_25 (AC006955) putative reverse t... 43 9e-04
gi|3319363 (AF077408) contains similarity to reverse transcripta... 43 0.001
gi|1515325 (U29471) polypeptide [Nasonia vitripennis] 35 0.001
gi|1515331 (U29472) polyprotein [Nasonia vitripennis] 35 0.001
gi|1515327 (U29470) polyprotein [Nasonia vitripennis] 35 0.001
gi|130602|sp|P21414|POL_GALV POL POLYPROTEIN [CONTAINS: PROTEASE... 40 0.002
gi|1515333 (U29473) polyprotein [Nasonia vitripennis] 35 0.002
gi|4235644 (AF119040) polyprotein [Lycopersicon esculentum] 42 0.002
gi|4539436|emb|CAB40024| (AL049523) putative reverse-transcripta... 42 0.002
gi|1658457 (U75248) reverse transcriptase [Gossypium barbadense] 41 0.003
gi|3510505 (AF030881) pol polyprotein [Fugu rubripes] 41 0.004
gi|4206306 (AF049110) prpol [Zea mays] 41 0.004
gi|2352039 (U94514) pol polyprotein [bovine syncytial virus] 34 0.005
gi|294962 (L06042) reverse transcriptase [Simian immunodeficienc... 40 0.006
gi|4206309 (AF049112) prpol [Zea mays] 40 0.006
gi|521193 (M37656) ORF2 [Drosophila ananassae] 40 0.006
gi|3810596 (AC005398) reverse-transcriptase-like protein [Arabid... 39 0.010
gi|1890639 (U58991) Pol [Simian immunodeficiency virus] 39 0.010
gi|3097273|emb|CAA74901| (Y14570) gag-pro-pol polyprotein [Simia... 36 0.011
gi|3135479 (AF049230) Pol [Dictyostelium discoideum] 39 0.013
gi|2367675 (AF017040) Pol [Dictyostelium discoideum] 39 0.013
gi|2323287 (AF009668) polyprotein [multiple sclerosis associated... 39 0.017
gi|257758|bbs|119658 reverse transcriptase homolog {HOMORT7, ret... 38 0.022
gi|4325361|gb|AAD17358| (AF128395) contains similarity to revers... 38 0.029
gi|4115365 (AC005957) reverse transcriptase-like protein [Arabid... 37 0.049
gi|4432807|gb|AAD20658| (AC006570) putative polyprotein [Arabido... 37 0.049
gi|4205699 (AF033164) pol protein [Human immunodeficiency virus ... 37 0.049
gi|1346746|sp|P03363|POL_HTLV2 POL POLYPROTEIN [CONTAINS: REVERS... 34 0.051
gi|74614|pir||GNLJH2 pol polyprotein - human T-cell lymphotropic... 34 0.051
gi|3695395 (AF096372) contains similarity to reverse transcripta... 33 0.067
gi|2343271 (AF014793) pol polyprotein [walleye epidermal hyperpl... 33 0.084
gi|535518 (U13766) gag-pol polyprotein [Murine leukemia virus] 36 0.085
gi|2801471 (AF033811) Pr180 [Moloney murine leukemia virus] 36 0.085
gi|1346748|sp|P03355|POL_MLVMO POL POLYPROTEIN [CONTAINS: PROTEA... 36 0.085
gi|74601|pir||GNMV1M pol polyprotein - Moloney murine leukemia v... 36 0.085
gi|2281588 (AF010170) Pol [synthetic construct] 36 0.085
gi|808733 (M32803) reverse transcriptase [Moloney murine leukemi... 36 0.085
gi|419483|pir||A46311 pol polyprotein - Moloney murine leukemia ... 36 0.085
gi|1311296|pdb|1MML| Mol_id: 1; Molecule: Mmlv Reverse Transcr... 36 0.085
gi|223354|prf||0711245A protein gag/pol/env [Moloney murine leuk... 36 0.085
gi|4071076 (AF019230) pol polypeptide [Murine leukemia virus] 36 0.085
gi|2842430|emb|CAA70075| (Y08851) pol [Feline foamy virus] >gi|3... 31 0.11
gi|727181 (L40990) pol [Simian immunodeficiency virus] 36 0.11
gi|3377855 (AF076274) contains similarity to reverse trancriptas... 36 0.11
gi|4154397 (AF114285) reverse transcriptase [Human immunodeficie... 36 0.11
gi|130635|sp|P11368|POL_IPMA PUTATIVE POL POLYPROTEIN [CONTAINS:... 36 0.11
gi|1711029 (U78765) FeSFV polymerase [feline syncytial virus] >g... 31 0.14
gi|400821|sp|P31792|POL_FENV1 POL POLYPROTEIN [CONTAINS: REVERSE... 32 0.14
gi|130659|sp|P27980|POL_SIVAG POL POLYPROTEIN [CONTAINS: PROTEAS... 36 0.15
gi|2739172 (AF033259) polyprotein [porcine endogenous type C ret... 36 0.15
gi|2155267 (U90557) pol protein [Simian T-cell lymphotropic viru... 36 0.15
gi|3133302 (AF038600) pol protein [Sus scrofa] 36 0.15
gi|2133292|pir||S60179 pol polyprotein homolog - fungus (Fusariu... 36 0.15
gi|3702864 (AF077681) pol protein [Human immunodeficiency virus ... 36 0.15
gi|3702874 (AF077686) pol protein [Human immunodeficiency virus ... 36 0.15
gi|3005987|emb|CAA76582| (Y17013) pol [porcine endogenous retrov... 36 0.15
gi|4107489 (AF005496) gag-pol fusion polyprotein [Human immunode... 36 0.15
gi|1470291 (U64193) reverse transcriptase [Human immunodeficienc... 36 0.15
gi|323805 (M87592) reverse transcriptase [Equine infectious anem... 36 0.15
gi|323838 (M16575) pol polyprotein [Equine infectious anemia virus] 36 0.15
gi|2133676|pir||S70430 hypothetical protein 4 - fruit fly (Droso... 36 0.15
gi|290629 (M87581) reverse transcriptase [Equine infectious anem... 36 0.15
gi|130595|sp|P11204|POL_EIAV9 POL POLYPROTEIN [CONTAINS: PROTEAS... 36 0.15
gi|417517|sp|P32542|POL_EIAVC POL POLYPROTEIN [CONTAINS: PROTEAS... 36 0.15
gi|2739174 (AF033260) reverse transcriptase [porcine endogenous ... 36 0.15
gi|4512237|dbj|BAA75235| (AB014746) polyprotein [Hordeum vulgare] 36 0.15
gi|4512247|dbj|BAA75238| (AB014753) polyprotein [Morus bombycis] 36 0.15
gi|1871368 (U77599) polyprotein [Sus scrofa] 36 0.15
gi|1871370 (U77600) polyprotein [Sus scrofa domestica] 36 0.15
gi|130596|sp|P03371|POL_EIAVY POL POLYPROTEIN [CONTAINS: PROTEAS... 35 0.19
gi|130585|sp|P10272|POL_BAEVM POL POLYPROTEIN [CONTAINS: PROTEAS... 35 0.19
gi|2338318 (AF009384) pol polyprotein [Human immunodeficiency vi... 35 0.19
gi|2460338 (AF021273) reverse transcriptase [Human immunodeficie... 35 0.19
gi|2460370 (AF021289) reverse transcriptase [Human immunodeficie... 35 0.19
gi|3033416 (U60065) pol polyprotein [Gibbon leukemia virus] 35 0.19
gi|509838 (M16550) pol polyprotein [Baboon endogenous virus] 35 0.19
gi|3702872 (AF077685) pol protein [Human immunodeficiency virus ... 35 0.19
gi|3702936 (AF077717) pol protein [Human immunodeficiency virus ... 35 0.19
gi|1498648 (U63133) Gag-Pol polyprotein [Mus musculus] 35 0.19
gi|3859006|emb|CAA05984| (AJ003204) reverse transcriptase [Human... 35 0.19
gi|4377652|emb|CAB16604| (Z99300) reverse transcriptase [Human i... 35 0.19
gi|4377665|emb|CAB16617| (Z99314) reverse transcriptase [Human i... 35 0.19
gi|3859002|emb|CAA05982| (AJ003202) reverse transcriptase [Human... 35 0.19
gi|3248895 (AF028231) polymerase polyprotein [Equine infectious ... 35 0.19
gi|4154371 (AF114272) reverse transcriptase [Human immunodeficie... 35 0.19
gi|2801512 (AF033820) pol polyprotein [Equine infectious anemia ... 35 0.19
gi|2745748 (AF004885) gag-pol polyprotein [Human immunodeficienc... 35 0.19
gi|3930592 (AF090469) reverse transcriptase [Human immunodeficie... 35 0.19
gi|4512244|dbj|BAA75237| (AB014751) polyprotein [Ipomoea nil] 35 0.19
gi|4205637 (AF033133) pol protein [Human immunodeficiency virus ... 35 0.19
gi|4205657 (AF033143) pol protein [Human immunodeficiency virus ... 35 0.19
gi|2343269 (AF014792) pol polyprotein [walleye epidermal hyperpl... 32 0.23
gi|130618|sp|P05959|POL_HV1RH POL POLYPROTEIN [CONTAINS: PROTEAS... 35 0.25
gi|3930590 (AF090468) reverse transcriptase [Human immunodeficie... 35 0.25
gi|4377778|gb|AAD19242| (AF056652) reverse transcriptase [Human ... 35 0.25
gi|4377782|gb|AAD19244| (AF056654) reverse transcriptase [Human ... 35 0.25
gi|4377786|gb|AAD19246| (AF056656) reverse transcriptase [Human ... 35 0.25
gi|4377794|gb|AAD19250| (AF056660) reverse transcriptase [Human ... 35 0.25
gi|4377792|gb|AAD19249| (AF056659) reverse transcriptase [Human ... 35 0.25
gi|4377788|gb|AAD19247| (AF056657) reverse transcriptase [Human ... 35 0.25
gi|4377806|gb|AAD19256| (AF056666) reverse transcriptase [Human ... 35 0.25
gi|4377790|gb|AAD19248| (AF056658) reverse transcriptase [Human ... 35 0.25
gi|4377834|gb|AAD19270| (AF056680) reverse transcriptase [Human ... 35 0.25
gi|4377838|gb|AAD19272| (AF056682) reverse transcriptase [Human ... 35 0.25
gi|3930596 (AF090471) reverse transcriptase [Human immunodeficie... 35 0.25
gi|3702860 (AF077679) pol protein [Human immunodeficiency virus ... 35 0.25
gi|3702862 (AF077680) pol protein [Human immunodeficiency virus ... 35 0.25
gi|3702870 (AF077684) pol protein [Human immunodeficiency virus ... 35 0.25
gi|3702920 (AF077709) pol protein [Human immunodeficiency virus ... 35 0.25
gi|3702924 (AF077711) pol protein [Human immunodeficiency virus ... 35 0.25
gi|3702938 (AF077718) pol protein [Human immunodeficiency virus ... 35 0.25
gi|3702940 (AF077719) pol protein [Human immunodeficiency virus ... 35 0.25
gi|3702942 (AF077720) pol protein [Human immunodeficiency virus ... 35 0.25
gi|4071331 (AF079464) pol protein [Human immunodeficiency virus ... 35 0.25
gi|4377940|gb|AAD19300| (AF072939) pol polyprotein [Human immuno... 35 0.25
gi|4377942|gb|AAD19302| (AF072941) pol polyprotein [Human immuno... 35 0.25
gi|3702866 (AF077682) pol protein [Human immunodeficiency virus ... 35 0.25
gi|4377963|gb|AAD19323| (AF072963) pol polyprotein [Human immuno... 35 0.25
gi|4377964|gb|AAD19324| (AF072964) pol polyprotein [Human immuno... 35 0.25
gi|4377965|gb|AAD19325| (AF072965) pol polyprotein [Human immuno... 35 0.25
gi|321529|pir||S32047 RNA-directed DNA polymerase (EC 2.7.7.49) ... 35 0.25
gi|321530|pir||S32048 RNA-directed DNA polymerase (EC 2.7.7.49) ... 35 0.25
gi|321531|pir||S32049 RNA-directed DNA polymerase (EC 2.7.7.49) ... 35 0.25
gi|321570|pir||S32089 RNA-directed DNA polymerase (EC 2.7.7.49) ... 35 0.25
gi|321573|pir||S32092 RNA-directed DNA polymerase (EC 2.7.7.49) ... 35 0.25
gi|321574|pir||S32093 RNA-directed DNA polymerase (EC 2.7.7.49) ... 35 0.25
gi|321579|pir||S32098 RNA-directed DNA polymerase (EC 2.7.7.49) ... 35 0.25
gi|3549963|emb|CAA12664| (AJ225927) reverse transcriptase [Human... 35 0.25
gi|2970245 (AF040579) pol polyprotein [Human immunodeficiency vi... 35 0.25
gi|4377668|emb|CAB16620| (Z99317) reverse transcriptase [Human i... 35 0.25
gi|4377667|emb|CAB16619| (Z99316) reverse transcriptase [Human i... 35 0.25
gi|130656|sp|P27973|POL_SIVA1 POL POLYPROTEIN [CONTAINS: PROTEAS... 35 0.25
gi|331995 (J01998) gag-pol polyprotein (tag amber codon at 2250-... 35 0.25
gi|4154424 (AF114299) reverse transcriptase [Human immunodeficie... 35 0.25
gi|101042|pir||A36373 hypothetical protein Tf1 - fission yeast (... 35 0.25
gi|130639|sp|P03356|POL_MLVAV POL POLYPROTEIN [CONTAINS: PROTEAS... 35 0.25
gi|927201 (M87550) reverse transcriptase [Murine leukemia virus] 35 0.25
gi|4512242|dbj|BAA75236| (AB014750) polyprotein [Nicotiana tabacum] 35 0.25
gi|4235404 (AF096885) pol polyprotein [Human immunodeficiency vi... 35 0.25
gi|538067 (M77661) putative pol polyprotein [Magnaporthe grisea] 35 0.25
gi|478289|pir||JN0791 Tf2 protein, Retrotransposon - fission yea... 35 0.25
gi|1710054|sp|Q05654|RDPO_SCHPO RETROTRANSPOSABLE ELEMENT TF2 15... 35 0.25
gi|2842524|emb|CAA16837| (AL021746) retrotransposable element [S... 35 0.25
gi|4205693 (AF033161) pol protein [Human immunodeficiency virus ... 35 0.25
gi|4205721 (AF033175) pol protein [Human immunodeficiency virus ... 35 0.25
gi|1924990 (U83605) reverse transcriptase [Human immunodeficienc... 34 0.33
gi|2460350 (AF021279) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2460358 (AF021283) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2460412 (AF021310) reverse transcriptase [Human immunodeficie... 34 0.33
gi|3930672 (AF090509) reverse transcriptase [Human immunodeficie... 34 0.33
gi|3930674 (AF090510) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2460426 (AF021317) reverse transcriptase [Human immunodeficie... 34 0.33
gi|4239649 (AF069672) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3163931|emb|CAA06947| (AJ006287) pol polyprotein precursor [H... 34 0.33
gi|4205617 (AF033123) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4205619 (AF033124) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4205621 (AF033125) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4205631 (AF033130) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4205681 (AF033155) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4205647 (AF033138) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4205685 (AF033157) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4205623 (AF033126) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4377744|gb|AAD19225| (AF056635) reverse transcriptase [Human ... 34 0.33
gi|4377746|gb|AAD19226| (AF056636) reverse transcriptase [Human ... 34 0.33
gi|4377748|gb|AAD19227| (AF056637) reverse transcriptase [Human ... 34 0.33
gi|4377824|gb|AAD19265| (AF056675) reverse transcriptase [Human ... 34 0.33
gi|4377800|gb|AAD19253| (AF056663) reverse transcriptase [Human ... 34 0.33
gi|4377812|gb|AAD19259| (AF056669) reverse transcriptase [Human ... 34 0.33
gi|4377814|gb|AAD19260| (AF056670) reverse transcriptase [Human ... 34 0.33
gi|4377810|gb|AAD19258| (AF056668) reverse transcriptase [Human ... 34 0.33
gi|4377820|gb|AAD19263| (AF056673) reverse transcriptase [Human ... 34 0.33
gi|4377822|gb|AAD19264| (AF056674) reverse transcriptase [Human ... 34 0.33
gi|4377760|gb|AAD19233| (AF056643) reverse transcriptase [Human ... 34 0.33
gi|4377758|gb|AAD19232| (AF056642) reverse transcriptase [Human ... 34 0.33
gi|4377796|gb|AAD19251| (AF056661) reverse transcriptase [Human ... 34 0.33
gi|4377826|gb|AAD19266| (AF056676) reverse transcriptase [Human ... 34 0.33
gi|4377828|gb|AAD19267| (AF056677) reverse transcriptase [Human ... 34 0.33
gi|548570|sp|P35963|POL_HV1Y2 POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.33
gi|1841424|emb|CAA71194| (Y10107) reverse transcriptase [Human i... 34 0.33
gi|2769609|emb|CAA76091| (Y16145) reverse transcriptase [Human i... 34 0.33
gi|4071335 (AF079466) pol protein [Human immunodeficiency virus ... 34 0.33
gi|4324862|gb|AAD17126| (AF110974) gag-pol polyprotein [Human im... 34 0.33
gi|4324871|gb|AAD17135| (AF110975) gag-pol polyprotein [Human im... 34 0.33
gi|4377678|emb|CAB16630| (Z99329) reverse transcriptase [Human i... 34 0.33
gi|4377941|gb|AAD19301| (AF072940) pol polyprotein [Human immuno... 34 0.33
gi|4545155|gb|AAD22418| (AF107375) pol protein [Human immunodefi... 34 0.33
gi|4545157|gb|AAD22419| (AF107376) pol protein [Human immunodefi... 34 0.33
gi|4545159|gb|AAD22420| (AF107377) pol protein [Human immunodefi... 34 0.33
gi|3859028|emb|CAA09176| (AJ010422) reverse transcriptase [Human... 34 0.33
gi|4377945|gb|AAD19305| (AF072944) pol polyprotein [Human immuno... 34 0.33
gi|321589|pir||S32131 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.33
gi|2258475 (AF011755) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2460332 (AF021270) reverse transcriptase [Human immunodeficie... 34 0.33
gi|3702876 (AF077687) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3702878 (AF077688) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3702922 (AF077710) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3702928 (AF077713) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3702930 (AF077714) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3702932 (AF077715) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3702934 (AF077716) pol protein [Human immunodeficiency virus ... 34 0.33
gi|1237256 (M18247) gag-pol precursor polyprotein gPr80 [Feline ... 34 0.33
gi|3702944 (AF077721) pol protein [Human immunodeficiency virus ... 34 0.33
gi|3858993|emb|CAA09173| (AJ010419) reverse transcriptase [Human... 34 0.33
gi|1470295 (U64196) reverse transcriptase [Human immunodeficienc... 34 0.33
gi|3002831 (AF042100) gag-pol fusion polyprotein [Human immunode... 34 0.33
gi|469950|emb|CAA81337| (Z26586) reverse transcriptase [Human im... 34 0.33
gi|2769601|emb|CAA76087| (Y16141) reverse transcriptase [Human i... 34 0.33
gi|2769611|emb|CAA76092| (Y16146) reverse transcriptase [Human i... 34 0.33
gi|3420023 (AF052723) gag-pol precursor polyprotein gPr80 [Felin... 34 0.33
gi|3549937|emb|CAA12651| (AJ225914) reverse transcriptase [Human... 34 0.33
gi|3549939|emb|CAA12652| (AJ225915) reverse transcriptase [Human... 34 0.33
gi|1800129 (U82096) reverse transcriptase [Human immunodeficienc... 34 0.33
gi|4154363 (AF114268) reverse transcriptase [Human immunodeficie... 34 0.33
gi|4154389 (AF114281) reverse transcriptase [Human immunodeficie... 34 0.33
gi|4154391 (AF114282) reverse transcriptase [Human immunodeficie... 34 0.33
gi|4154409 (AF114291) reverse transcriptase [Human immunodeficie... 34 0.33
gi|4154411 (AF114292) reverse transcriptase [Human immunodeficie... 34 0.33
gi|4324847|gb|AAD17111| (AF110972) gag-pol polyprotein [Human im... 34 0.33
gi|4324855|gb|AAD17119| (AF110973) gag-pol polyprotein [Human im... 34 0.33
gi|555007 (M83276) reverse transcriptase [Human immunodeficiency... 34 0.33
gi|1470235 (U64163) reverse transcriptase [Human immunodeficienc... 34 0.33
gi|1899136 (U86780) pol protein [Human immunodeficiency virus ty... 34 0.33
gi|2338472 (AF013426) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2338474 (AF013427) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2338478 (AF013429) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2338544 (AF013462) reverse transcriptase [Human immunodeficie... 34 0.33
gi|2338546 (AF013463) reverse transcriptase [Human immunodeficie... 34 0.33
gi|3930594 (AF090470) reverse transcriptase [Human immunodeficie... 34 0.33
gi|4377636|emb|CAA81339| (Z26588) reverse transcriptase [Human i... 34 0.33
gi|3600064|gb|AAC63290| (AF080229) polymerase [Human endogenous ... 32 0.40
gi|2460352 (AF021280) reverse transcriptase [Human immunodeficie... 34 0.43
gi|2460368 (AF021288) reverse transcriptase [Human immunodeficie... 34 0.43
gi|2460414 (AF021311) reverse transcriptase [Human immunodeficie... 34 0.43
gi|2460416 (AF021312) reverse transcriptase [Human immunodeficie... 34 0.43
gi|3930686 (AF090516) reverse transcriptase [Human immunodeficie... 34 0.43
gi|3930688 (AF090517) reverse transcriptase [Human immunodeficie... 34 0.43
gi|3930698 (AF090522) reverse transcriptase [Human immunodeficie... 34 0.43
gi|3930700 (AF090523) reverse transcriptase [Human immunodeficie... 34 0.43
gi|3930702 (AF090524) reverse transcriptase [Human immunodeficie... 34 0.43
gi|4406792|gb|AAD20101| (AC006304) putative reverse transcriptas... 34 0.43
gi|400826|sp|Q02836|POL_SIVAI POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.43
gi|334437 (M66437) pol gene product [Simian immunodeficiency virus] 34 0.43
gi|1470166 (U64125) reverse transcriptase [Human immunodeficienc... 34 0.43
gi|2570314 (U88824) gag-Pol fusion [Human immunodeficiency virus... 34 0.43
gi|4205695 (AF033162) pol protein [Human immunodeficiency virus ... 34 0.43
gi|2338301 (AF009374) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2338304 (AF009376) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2338344 (AF009400) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2338346 (AF009401) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|3858983|emb|CAA09168| (AJ010414) reverse transcriptase [Human... 34 0.43
gi|495770 (M12927) unknown protein [Drosophila melanogaster] 34 0.43
gi|3549971|emb|CAA12668| (AJ225931) reverse transcriptase [Human... 34 0.43
gi|3808242 (AF069669) pol protein [Human immunodeficiency virus ... 34 0.43
gi|2619060 (AF027709) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2970259 (AF040586) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2970263 (AF040588) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2970267 (AF040590) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2970271 (AF040592) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|2970273 (AF040593) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|3702880 (AF077689) pol protein [Human immunodeficiency virus ... 34 0.43
gi|3702882 (AF077690) pol protein [Human immunodeficiency virus ... 34 0.43
gi|3702884 (AF077691) pol protein [Human immunodeficiency virus ... 34 0.43
gi|4377960|gb|AAD19320| (AF072960) pol polyprotein [Human immuno... 34 0.43
gi|4377970|gb|AAD19330| (AF072971) pol polyprotein [Human immuno... 34 0.43
gi|2970261 (AF040587) pol polyprotein [Human immunodeficiency vi... 34 0.43
gi|4545168|gb|AAD22424| (AF107382) pol protein [Human immunodefi... 34 0.43
gi|4545170|gb|AAD22425| (AF107383) pol protein [Human immunodefi... 34 0.43
gi|4545172|gb|AAD22426| (AF107384) pol protein [Human immunodefi... 34 0.43
gi|321549|pir||S32068 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.43
gi|321585|pir||S32126 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.43
gi|321587|pir||S32128 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.43
gi|321588|pir||S32129 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.43
gi|321590|pir||S32132 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.43
gi|321600|pir||S32152 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.43
gi|885633 (U16779) reverse transcriptase [Human immunodeficiency... 34 0.43
gi|1322401|emb|CAA61544| (X89270) pol protein [Human T-cell lymp... 34 0.43
gi|2258473 (AF011754) reverse transcriptase [Human immunodeficie... 34 0.43
gi|2801517 (AF033821) Prgag-pol [Drosophila melanogaster] 34 0.43
gi|3549965|emb|CAA12665| (AJ225928) reverse transcriptase [Human... 34 0.43
gi|3549969|emb|CAA12667| (AJ225930) reverse transcriptase [Human... 34 0.43
gi|404039 (L20734) pol polyprotein [Human T-cell lymphotropic vi... 34 0.43
gi|1470132 (U64107) reverse transcriptase [Human immunodeficienc... 34 0.43
gi|3808262 (AF069671) pol protein [Human immunodeficiency virus ... 34 0.43
gi|4377666|emb|CAB16618| (Z99315) reverse transcriptase [Human i... 34 0.43
gi|4377679|emb|CAB16631| (Z99330) reverse transcriptase [Human i... 34 0.43
gi|4377680|emb|CAB16632| (Z99331) reverse transcriptase [Human i... 34 0.43
gi|4377682|emb|CAB16634| (Z99333) reverse transcriptase [Human i... 34 0.43
gi|625622|pir||E47330 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.43
gi|2970331 (AF040623) reverse transcriptase [Human immunodeficie... 34 0.43
gi|1800131 (U82097) reverse transcriptase [Human immunodeficienc... 34 0.43
gi|4154373 (AF114273) reverse transcriptase [Human immunodeficie... 34 0.43
gi|4154407 (AF114290) reverse transcriptase [Human immunodeficie... 34 0.43
gi|4154426 (AF114300) reverse transcriptase [Human immunodeficie... 34 0.43
gi|1470134 (U64108) reverse transcriptase [Human immunodeficienc... 34 0.43
gi|4377644|emb|CAA74840| (Y14500) pol protein [Human immunodefic... 34 0.43
gi|130583|sp|P10401|POLY_DROME RETROVIRUS-RELATED POL POLYPROTEI... 34 0.43
gi|929567|emb|CAA27371| (X03734) reverse transcriptase-like enzy... 34 0.43
gi|1470158 (U64121) reverse transcriptase [Human immunodeficienc... 34 0.43
gi|3133305 (AF038601) pol protein [Sus scrofa] 34 0.43
gi|3930716 (AF090531) reverse transcriptase [Human immunodeficie... 34 0.43
gi|3930588 (AF090467) reverse transcriptase [Human immunodeficie... 34 0.43
gi|4205055 (U69591) pol polyprotein [Human immunodeficiency viru... 34 0.43
gi|130614|sp|P04588|POL_HV1MA POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.56
gi|130612|sp|P18802|POL_HV1ND POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.56
gi|130619|sp|P24740|POL_HV1U4 POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.56
gi|1065288|pdb|1HNI|B Human immunodeficiency virus type 1 34 0.56
gi|1065294|pdb|1HNV|B Human immunodeficiency virus type 1 >gi|18... 34 0.56
gi|1289518 (U53870) reverse transcriptase [Human immunodeficienc... 34 0.56
gi|1924988 (U83604) reverse transcriptase [Human immunodeficienc... 34 0.56
gi|2194008|pdb|1UWB|B Chain B, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo 34 0.56
gi|2460382 (AF021295) reverse transcriptase [Human immunodeficie... 34 0.56
gi|2460388 (AF021298) reverse transcriptase [Human immunodeficie... 34 0.56
gi|2460402 (AF021305) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3089480 (AF047280) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3089488 (AF047284) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3089490 (AF047285) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930598 (AF090472) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930614 (AF090480) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930622 (AF090484) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930624 (AF090485) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930662 (AF090504) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930676 (AF090511) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930690 (AF090518) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930692 (AF090519) reverse transcriptase [Human immunodeficie... 34 0.56
gi|640349|pdb|3HVT|B Human immunodeficiency virus type 1 34 0.56
gi|3930714 (AF090530) reverse transcriptase [Human immunodeficie... 34 0.56
gi|4139739|pdb|1RTD|A Chain A, Structure Of A Catalytic Complex ... 34 0.56
gi|4139741|pdb|1RTD|C Chain C, Structure Of A Catalytic Complex ... 34 0.56
gi|130610|sp|P04589|POL_HV1EL POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.56
gi|4389176|pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type... 34 0.56
gi|280492|pir||S23570 pol polyprotein homolog - fungus (Cladospo... 34 0.56
gi|130634|sp|P04026|POL_IPHA PUTATIVE POL POLYPROTEIN [CONTAINS:... 34 0.56
gi|896047 (U28646) reverse transcriptase/RNaseH [Human immunodef... 34 0.56
gi|2338299 (AF009373) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|2338306 (AF009377) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|2338310 (AF009379) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|2338338 (AF009396) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|3403227 (AF061642) pol protein [Human immunodeficiency virus ... 34 0.56
gi|3549997|emb|CAA12681| (AJ225944) reverse transcriptase [Human... 34 0.56
gi|4205663 (AF033146) pol protein [Human immunodeficiency virus ... 34 0.56
gi|4205665 (AF033147) pol protein [Human immunodeficiency virus ... 34 0.56
gi|4205667 (AF033148) pol protein [Human immunodeficiency virus ... 34 0.56
gi|4235406 (AF096886) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|4377762|gb|AAD19234| (AF056644) reverse transcriptase [Human ... 34 0.56
gi|60230|emb|CAA28012| (X04415) pol polyprotein (NH2-terminus un... 34 0.56
gi|4377764|gb|AAD19235| (AF056645) reverse transcriptase [Human ... 34 0.56
gi|4377766|gb|AAD19236| (AF056646) reverse transcriptase [Human ... 34 0.56
gi|4377768|gb|AAD19237| (AF056647) reverse transcriptase [Human ... 34 0.56
gi|130620|sp|P04585|POL_HV1H2 POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.56
gi|327367 (M92997) reverse transcriptase [Human immunodeficiency... 34 0.56
gi|587129|emb|CAA85505| (Z37142) reverse transcriptase [Human im... 34 0.56
gi|74623|pir||GNVWLV pol polyprotein - human immunodeficiency vi... 34 0.56
gi|1055031 (U39362) POL polyprotein precursor [Human immunodefic... 34 0.56
gi|1171166 (U43096) pol polyprotein [Human immunodeficiency viru... 34 0.56
gi|1176376 (U26546) Pol [Human immunodeficiency virus type 1] 34 0.56
gi|1772626 (U21135) pol polyprotein [Human immunodeficiency viru... 34 0.56
gi|1857261 (U76035) pol protein [Human immunodeficiency virus ty... 34 0.56
gi|2801490 (AF033817) Pr gag-pro-pol [Human T-cell lymphotropic ... 34 0.56
gi|3098584 (AF049495) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|3114555 (AF005495) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|221478|dbj|BAA00993| (D10112) pol polyprotein [Human immunode... 34 0.56
gi|4139740|pdb|1RTD|B Chain B, Structure Of A Catalytic Complex ... 34 0.56
gi|329516 (M92819) pol polyprotein [Human T-cell lymphotropic vi... 34 0.56
gi|885617 (U16771) reverse transcriptase [Human immunodeficiency... 34 0.56
gi|999814|pdb|1HMV|A Human immunodeficiency virus type 1 34 0.56
gi|1421213|pdb|1RTH|A Human immunodeficiency virus type 1 >gi|14... 34 0.56
gi|1827604|pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase >gi|2... 34 0.56
gi|2723929 (AF027399) pol protein [Human immunodeficiency virus ... 34 0.56
gi|2801525 (AF033822) Pr gag-pro-pol [Walleye dermal sarcoma virus] 34 0.56
gi|3002878 (AF042105) gag-pol fusion polyprotein [Human immunode... 34 0.56
gi|3702886 (AF077692) pol protein [Human immunodeficiency virus ... 34 0.56
gi|3702948 (AF077723) pol protein [Human immunodeficiency virus ... 34 0.56
gi|3947891|gb|AAC82598| (AF033819) Gag-Pol [Human immunodeficien... 34 0.56
gi|3930644 (AF090495) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3930646 (AF090496) reverse transcriptase [Human immunodeficie... 34 0.56
gi|4235414 (AF096890) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|4377937|gb|AAD19297| (AF072936) pol polyprotein [Human immuno... 34 0.56
gi|4377944|gb|AAD19304| (AF072943) pol polyprotein [Human immuno... 34 0.56
gi|4377946|gb|AAD19306| (AF072945) pol polyprotein [Human immuno... 34 0.56
gi|4377949|gb|AAD19309| (AF072948) pol polyprotein [Human immuno... 34 0.56
gi|2723919 (AF027392) pol protein [Human immunodeficiency virus ... 34 0.56
gi|4377951|gb|AAD19311| (AF072950) pol polyprotein [Human immuno... 34 0.56
gi|4377952|gb|AAD19312| (AF072951) pol polyprotein [Human immuno... 34 0.56
gi|4377956|gb|AAD19316| (AF072955) pol polyprotein [Human immuno... 34 0.56
gi|4377961|gb|AAD19321| (AF072961) pol polyprotein [Human immuno... 34 0.56
gi|4377972|gb|AAD19332| (AF072973) pol polyprotein [Human immuno... 34 0.56
gi|4558187|pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse ... 34 0.56
gi|321547|pir||S32066 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321552|pir||S32071 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321553|pir||S32072 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321554|pir||S32073 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321556|pir||S32075 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321557|pir||S32076 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321559|pir||S32078 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321577|pir||S32096 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|321591|pir||S32133 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|560781|dbj|BAA04704| (D21168) reverse transcriptase [Human im... 34 0.56
gi|1470190 (U64137) reverse transcriptase [Human immunodeficienc... 34 0.56
gi|2582715|emb|CAA05344| (AJ002370) reverse transcriptase [Human... 34 0.56
gi|2970251 (AF040582) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|2970255 (AF040584) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|2970269 (AF040591) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|2970309 (AF040611) pol polyprotein [Human immunodeficiency vi... 34 0.56
gi|3089482 (AF047281) reverse transcriptase [Human immunodeficie... 34 0.56
gi|321575|pir||S32094 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|3089484 (AF047282) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3413522|dbj|BAA32280| (AB016585) unnamed protein product [Tri... 34 0.56
gi|3930600 (AF090473) reverse transcriptase [Human immunodeficie... 34 0.56
gi|321555|pir||S32074 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|4377662|emb|CAB16614| (Z99311) reverse transcriptase [Human i... 34 0.56
gi|4377675|emb|CAB16627| (Z99325) reverse transcriptase [Human i... 34 0.56
gi|4377677|emb|CAB16629| (Z99328) reverse transcriptase [Human i... 34 0.56
gi|321548|pir||S32067 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|4377681|emb|CAB16633| (Z99332) reverse transcriptase [Human i... 34 0.56
gi|4545174|gb|AAD22427| (AF107385) pol protein [Human immunodefi... 34 0.56
gi|130617|sp|P03368|POL_HV1PV POL POLYPROTEIN [CONTAINS: PROTEAS... 34 0.56
gi|328539 (M17740) reverse transcriptase (pol gene) [Human immun... 34 0.56
gi|74624|pir||GNVWVL pol polyprotein - human immunodeficiency vi... 34 0.56
gi|625618|pir||A47330 RNA-directed DNA polymerase (EC 2.7.7.49) ... 34 0.56
gi|699500 (U19949) putative frameshifting site at 2599; site of ... 34 0.56
gi|1398975|dbj|BAA12989| (D86068) Pol [Human immunodeficiency vi... 34 0.56
gi|1470130 (U64106) reverse transcriptase [Human immunodeficienc... 34 0.56
gi|1470188 (U64136) reverse transcriptase [Human immunodeficienc... 34 0.56
gi|1800116 (U82089) reverse transcriptase [Human immunodeficienc... 34 0.56
gi|1800133 (U82098) reverse transcriptase [Human immunodeficienc... 34 0.56
gi|2970339 (AF040627) reverse transcriptase [Human immunodeficie... 34 0.56
gi|3550005|emb|CAA12685| (AJ225948) reverse transcriptase [Human... 34 0.56
gi|3550007|emb|CAA12686| (AJ225949) reverse transcriptase [Human... 34 0.56
gi|1398966|dbj|BAA12997| (D86069) Pol [Human immunodeficiency vi... 34 0.56
gi|3930586 (AF090466) reverse transcriptase [Human immunodeficie... 34 0.56
gi|4154377 (AF114275) reverse transcriptase [Human immunodeficie... 34 0.56
gi|4154381 (AF114277) reverse transcriptase [Human immunodeficie... 34 0.56
gi|4154383 (AF114278) reverse transcriptase [Human immunodeficie... 34 0.56
gi|4154428 (AF114301) reverse transcriptase [Human immunodeficie... 34 0.56
gi|4324832|gb|AAD17096| (AF110970) gag-pol polyprotein [Human im... 34 0.56
>gi|2920563 (AF019229) DNA dependent reverse transcriptase [Spraguea lophii]
Length = 117
Score = 143 bits (356), Expect = 2e-59
Identities = 67/71 (94%), Positives = 67/71 (94%)
Query: 17 IAMKYQISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQG 196
IAMKYQISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQG
Sbjct: 1 IAMKYQISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQG 60
Query: 197 FKNNPDNFSSG 229
FKNNP F G
Sbjct: 61 FKNNPAIFQRG 71
Score = 106 bits (263), Expect = 2e-59
Identities = 50/51 (98%), Positives = 50/51 (98%)
Query: 216 IFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
IF RGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL
Sbjct: 67 IFQRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 117
>gi|1402848 (U60529) pol-like protein [Ceratitis capitata]
Length = 1060
Score = 53.9 bits (127), Expect = 1e-14
Identities = 25/57 (43%), Positives = 38/57 (65%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
LK +IF R L +L D IG C+ YIDDI+++S+ ++EH T+LK + L+K N+
Sbjct: 326 LKNAPSIFQRTLDDILRDYIGQCCYVYIDDIIIFSRNEKEHSTHLKNIFTTLEKANM 382
Score = 45.7 bits (106), Expect = 1e-14
Identities = 25/63 (39%), Positives = 36/63 (56%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I++ L L +FS++DL+ GF Q+ L + D KTAF N +FT +P G KN P
Sbjct: 272 EINEVLSHLGSNTFFSVIDLKSGFHQIPLKNSDIEKTAF-SINNEKYEFTRLPFGLKNAP 330
Query: 212 DNF 220
F
Sbjct: 331 SIF 333
>gi|102939|pir||B36329 hypothetical protein 2 - cabbage looper transposon TED (fragment)
Length = 1236
Score = 46.9 bits (109), Expect = 3e-12
Identities = 26/62 (41%), Positives = 37/62 (58%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
IS L L +YF+ LDL GF+QV ++ +D KTAF + ++ +F MP G KN+P
Sbjct: 368 ISDVLDKLGKCQYFTTLDLASGFYQVEMDPQDISKTAF-NVEHGHFEFLRMPMGLKNSPS 426
Query: 215 NF 220
F
Sbjct: 427 TF 428
Score = 44.1 bits (102), Expect = 3e-12
Identities = 24/56 (42%), Positives = 34/56 (59%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFN 365
LK + F R + VL L N C Y+DDI+VYS + +EH NL+ V +RL++ N
Sbjct: 421 LKNSPSTFQRVMDNVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESN 476
>gi|1226168 (M32662) ORF B (bases 1850-5560) first start codon at 2306
[Autographa californica nucleopolyhedrovirus]
Length = 1084
Score = 46.9 bits (109), Expect = 3e-12
Identities = 26/62 (41%), Positives = 37/62 (58%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
IS L L +YF+ LDL GF+QV ++ +D KTAF + ++ +F MP G KN+P
Sbjct: 216 ISDVLDKLGKCQYFTTLDLASGFYQVEMDPQDISKTAF-NVEHGHFEFLRMPMGLKNSPS 274
Query: 215 NF 220
F
Sbjct: 275 TF 276
Score = 44.1 bits (102), Expect = 3e-12
Identities = 24/56 (42%), Positives = 34/56 (59%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFN 365
LK + F R + VL L N C Y+DDI+VYS + +EH NL+ V +RL++ N
Sbjct: 269 LKNSPSTFQRVMDNVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESN 324
>gi|2791289|emb|CAA04050| (AJ000387) protease [Drosophila melanogaster]
Length = 1217
Score = 46.1 bits (107), Expect = 9e-12
Identities = 27/62 (43%), Positives = 35/62 (55%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
I+ L S+ +YFS LDL GF Q+ +N +D KTAF + +FT MP G KN P
Sbjct: 394 INDILDSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGH-YEFTRMPFGLKNAPA 452
Query: 215 NF 220
F
Sbjct: 453 TF 454
Score = 43.4 bits (100), Expect = 9e-12
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFN 365
LK F R + VL DL G C Y+DDI+++S + ++H ++K+V E+L+ N
Sbjct: 447 LKNAPATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAAN 502
>gi|4165194|emb|CAA08807| (AJ009736) Pol protein [Drosophila melanogaster]
Length = 1150
Score = 47.6 bits (111), Expect = 4e-11
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
LK F R ++ +L DLI C Y+DDI+VYS EEH +LK V E+L+ NL
Sbjct: 411 LKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLRDANL 467
Score = 39.5 bits (90), Expect = 4e-11
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+YF+ +DL GF Q+ ++ KTAF K+ ++T MP G KN P F
Sbjct: 369 QYFTTIDLAKGFHQIQMDENSIAKTAF-STKHGHYEYTRMPFGLKNAPATF 418
>gi|3493214 (AF056940) pol polyprotein [Drosophila virilis]
Length = 1188
Score = 42.2 bits (97), Expect = 6e-10
Identities = 21/57 (36%), Positives = 36/57 (62%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
LK F R ++ +L DLI C ++DDI+++S + EEH +L+ V ++L++ NL
Sbjct: 454 LKNAPATFQRCMNNLLEDLIFKDCLVHLDDIIIFSTSLEEHILSLQKVFKKLREANL 510
Score = 41.0 bits (94), Expect = 6e-10
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+YF+ +DL GF Q+ ++ PKTAF K+ ++T MP G KN P F
Sbjct: 412 QYFTTIDLAKGFHQIQMDPGSIPKTAF-STKHGHYEYTRMPFGLKNAPATF 461
>gi|130405|sp|P04323|POL3_DROME RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 17.6 [CONTAINS:
PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
>gi|74642|pir||GNFF17 retrovirus-related pol polyprotein
- fruit fly (Drosophila melanogaster) transposon 17.6
>gi|1335613|emb|CAA25702| (X01472) ORF 2, pot. reverse
transcriptase [Drosophila melanogaster]
>gi|224319|prf||1101404B ORF 2 [Drosophila melanogaster]
Length = 1058
Score = 44.5 bits (103), Expect = 1e-09
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
LK F R ++ +L L+ C Y+DDI+V+S + +EH +L LV E+L K NL
Sbjct: 338 LKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANL 394
Score = 37.5 bits (85), Expect = 1e-09
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
YF+ +DL GF Q+ ++ E KTAF K+ ++ MP G KN P F
Sbjct: 297 YFTTIDLAKGFHQIEMDPESVSKTAF-STKHGHYEYLRMPFGLKNAPATF 345
>gi|422418|pir||S34639 pol protein - fruit fly (Drosophila ananassae) transposon Tom
(fragment) >gi|394705|emb|CAA80824| (Z24451) pol protein
[Drosophila ananassae]
Length = 1040
Score = 43.0 bits (99), Expect = 5e-09
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
L+ F R ++ +L LI C Y+DD++++S + +EH +L+LV E+L + NL
Sbjct: 298 LRNAPATFQRCMNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLSESNL 354
Score = 37.1 bits (84), Expect = 5e-09
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+YF+ +DL GF Q+ ++ E KTAF K ++ MP G +N P F
Sbjct: 256 QYFTTIDLARGFHQIEMDSESIQKTAF-STKRGHYEYVRMPFGLRNAPATF 305
>gi|4539021|emb|CAB39733| (AJ133521) protease, reverse transcriptase, ribonuclease H,
integrase [Drosophila buzzatii]
Length = 1147
Score = 41.0 bits (94), Expect = 7e-09
Identities = 21/58 (36%), Positives = 29/58 (49%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L L Y + LDL+DG++Q+ + RP TAF L Q+ MP G + P F
Sbjct: 372 LDQLREARYITSLDLKDGYWQIPMEKSSRPLTAFTVPGKGLFQWKVMPFGLHSAPATF 429
Score = 38.7 bits (88), Expect = 7e-09
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F R L V+ + F+Y+DDI+V +T++EH NL+ V RL+ NL
Sbjct: 429 FQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVFRRLRAANL 478
>gi|1945323|emb|CAA97115| (Z72894) TY3B [Saccharomyces cerevisiae] >gi|1945324|emb|CAA97117|
(Z72895) TY3B [Saccharomyces cerevisiae]
Length = 1547
Score = 42.2 bits (97), Expect = 1e-08
Identities = 21/64 (32%), Positives = 34/64 (52%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L + + F+ LDL G+ Q+ + +DR KTAF+ + ++T MP G N P
Sbjct: 668 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGK-YEYTVMPFGLVNAP 726
Query: 212 DNFS 223
F+
Sbjct: 727 STFA 730
Score = 36.7 bits (83), Expect = 1e-08
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++S++ EEH +L V ERLK NL
Sbjct: 746 YLDDILIFSESPEEHWKHLDTVLERLKNENL 776
>gi|2133196|pir||S69842 TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon
Ty3.GR
Length = 1547
Score = 42.2 bits (97), Expect = 1e-08
Identities = 21/64 (32%), Positives = 34/64 (52%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L + + F+ LDL G+ Q+ + +DR KTAF+ + ++T MP G N P
Sbjct: 668 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGK-YEYTVMPFGLVNAP 726
Query: 212 DNFS 223
F+
Sbjct: 727 STFA 730
Score = 36.7 bits (83), Expect = 1e-08
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++S++ EEH +L V ERLK NL
Sbjct: 746 YLDDILIFSESPEEHWKHLDTVLERLKNENL 776
>gi|1084606|pir||S53577 TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon
Ty3-2
Length = 1498
Score = 42.2 bits (97), Expect = 1e-08
Identities = 21/64 (32%), Positives = 34/64 (52%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L + + F+ LDL G+ Q+ + +DR KTAF+ + ++T MP G N P
Sbjct: 694 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGK-YEYTVMPFGLVNAP 752
Query: 212 DNFS 223
F+
Sbjct: 753 STFA 756
Score = 36.7 bits (83), Expect = 1e-08
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++S++ EEH +L V ERLK NL
Sbjct: 772 YLDDILIFSESPEEHWKHLDTVLERLKNENL 802
>gi|536873 (M34549) POL3 gene product [Saccharomyces cerevisiae]
Length = 1270
Score = 42.2 bits (97), Expect = 1e-08
Identities = 21/64 (32%), Positives = 34/64 (52%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L + + F+ LDL G+ Q+ + +DR KTAF+ + ++T MP G N P
Sbjct: 391 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGK-YEYTVMPFGLVNAP 449
Query: 212 DNFS 223
F+
Sbjct: 450 STFA 453
Score = 36.7 bits (83), Expect = 1e-08
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++S++ EEH +L V ERLK NL
Sbjct: 469 YLDDILIFSESPEEHWKHLDTVLERLKNENL 499
>gi|173088 (M23367) has homology to retroviral pol genes; ORF2 TYB3-2 (5' end
of coding region not precisely determined)
[Saccharomyces cerevisiae]
Length = 1221
Score = 42.2 bits (97), Expect = 1e-08
Identities = 21/64 (32%), Positives = 34/64 (52%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L + + F+ LDL G+ Q+ + +DR KTAF+ + ++T MP G N P
Sbjct: 417 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGK-YEYTVMPFGLVNAP 475
Query: 212 DNFS 223
F+
Sbjct: 476 STFA 479
Score = 36.7 bits (83), Expect = 1e-08
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++S++ EEH +L V ERLK NL
Sbjct: 495 YLDDILIFSESPEEHWKHLDTVLERLKNENL 525
>gi|1326016|emb|CAA86713| (Z46728) YI9910.15, incomplete TY3-2 orfB, len: >1099, CAI: 0.13
[Saccharomyces cerevisiae]
Length = 1099
Score = 42.2 bits (97), Expect = 1e-08
Identities = 21/64 (32%), Positives = 34/64 (52%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L + + F+ LDL G+ Q+ + +DR KTAF+ + ++T MP G N P
Sbjct: 417 RIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGK-YEYTVMPFGLVNAP 475
Query: 212 DNFS 223
F+
Sbjct: 476 STFA 479
Score = 36.7 bits (83), Expect = 1e-08
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++S++ EEH +L V ERLK NL
Sbjct: 495 YLDDILIFSESPEEHWKHLDTVLERLKNENL 525
>gi|4539660|gb|AAD22153|AF061282_6 (AF061282) polyprotein [Sorghum bicolor]
Length = 1484
Score = 41.0 bits (94), Expect = 2e-08
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+IDDILV+SKTKEEH +L+LV ++L++ L
Sbjct: 712 FIDDILVFSKTKEEHAEHLRLVLQKLREHKL 742
Score = 36.7 bits (83), Expect = 2e-08
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 56 LHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L G FS +DL G+ Q+ + + D PKTAF + L ++T M G N P F
Sbjct: 640 LRGACVFSKIDLRSGYHQLKIRNSDIPKTAF-TTRYGLYEYTVMSFGLTNAPAYF 693
>gi|481446|pir||S38635 blastopia polyprotein - fruit fly (Drosophila melanogaster)
>gi|415798|emb|CAA81643| (Z27119) blastopia polyprotein
[Drosophila melanogaster]
Length = 1333
Score = 46.9 bits (109), Expect = 4e-08
Identities = 22/58 (37%), Positives = 34/58 (57%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L L ++F+ +DL++GFF V + +P TAF+ + L +F P GFKN+P F
Sbjct: 565 LEKLQSAKWFTTMDLQNGFFHVAVEEASKPYTAFV-TREGLFEFNKAPFGFKNSPAAF 621
Score = 30.1 bits (66), Expect = 4e-08
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 219 FHRGLHIVLCDLIGNGCFS-YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F R + + +LI + Y+DDI+VY+ T EE ++V +R +F L
Sbjct: 621 FIRFVQFIFQELINSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGL 671
>gi|2133581|pir||S68306 pol polyprotein, truncated - red flour beetle retrotransposon Woot
>gi|805077 (U09586) protease, reverse transcriptase and
RNase H [Tribolium castaneum]
Length = 712
Score = 40.2 bits (92), Expect = 4e-08
Identities = 22/54 (40%), Positives = 33/54 (60%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKK 359
LKT + F R + +VL + +YIDD+LV S+T EH +L+ V E+LK+
Sbjct: 431 LKTAVGSFSRAMDVVLGTEVREFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQ 484
Score = 36.7 bits (83), Expect = 4e-08
Identities = 20/59 (33%), Positives = 30/59 (49%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
LR H Y S +DL ++Q+ L+ E R TAF+ + R + +P G K +FS
Sbjct: 382 LRRFHEIRYMSTIDLRSSYWQIPLSPESRQYTAFLYN-GRSYTYQVLPFGLKTAVGSFS 439
>gi|4063760 (AC005561) putative POL3 protein [Arabidopsis thaliana]
Length = 1215
Score = 44.1 bits (102), Expect = 5e-08
Identities = 24/69 (34%), Positives = 35/69 (49%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
++ L LHG FS +DL+ G+ Q+ +N D KTAF K+ L ++ MP G + P
Sbjct: 491 RLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAF-KTKHGLYEWLVMPFGLTHAP 549
Query: 212 DNFSSGSTH 238
F H
Sbjct: 550 STFMRLMNH 558
Score = 32.5 bits (72), Expect = 5e-08
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F R ++ VL IG Y DDILVYS++ EH +L V L+K L
Sbjct: 552 FMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEEL 601
>gi|4539665|gb|AAD22158|AF061282_11 (AF061282) polyprotein [Sorghum bicolor]
Length = 924
Score = 39.1 bits (89), Expect = 7e-08
Identities = 22/63 (34%), Positives = 33/63 (51%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L L ++FS +DL G+ Q+ + ED PKTAF+ + +FT + G N P
Sbjct: 65 RIDDLLDQLKDAKFFSKIDLRSGYHQMKIRSEDVPKTAFVTRYGQ-YEFTVVSFGLTNAP 123
Query: 212 DNF 220
F
Sbjct: 124 AYF 126
Score = 37.1 bits (84), Expect = 7e-08
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+IDDILVYS + EEH+ +L++V E+L++ L
Sbjct: 145 FIDDILVYSASAEEHEQHLRVVLEKLRQNQL 175
>gi|1085915|pir||S52564 hypothetical protein 2 (clone Db314) - fruit fly (Drosophila
buzzatii) retrotransposon Osvaldo
Length = 754
Score = 41.4 bits (95), Expect = 7e-08
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L L Y + LDL+DG++Q+ + RP TAF L+Q+ MP G + P F
Sbjct: 72 LDQLREARYITSLDLKDGYWQIPMEKSSRPLTAFTVPGKGLLQWKVMPFGLHSAPVTF 129
Score = 34.8 bits (78), Expect = 7e-08
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F R L V+ + F+Y+DD +V +T++EH NL+ + RL+ NL
Sbjct: 129 FQRALDQVIGPDMMPHAFAYLDDKIVIGRTRQEHMDNLREMFRRLRAANL 178
>gi|896244|bbs|160066 (S75260) pol [Drosophila buzzatii, BU-24, Peptide Transposon, 263
aa] [Drosophila buzzatii]
Length = 263
Score = 41.4 bits (95), Expect = 7e-08
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L L Y + LDL+DG++Q+ + RP TAF L+Q+ MP G + P F
Sbjct: 72 LDQLREARYITSLDLKDGYWQIPMEKSSRPLTAFTVPGKGLLQWKVMPFGLHSAPVTF 129
Score = 34.8 bits (78), Expect = 7e-08
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F R L V+ + F+Y+DD +V +T++EH NL+ + RL+ NL
Sbjct: 129 FQRALDQVIGPDMMPHAFAYLDDKIVIGRTRQEHMDNLREMFRRLRAANL 178
>gi|130398|sp|P20825|POL2_DROME RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 297 [CONTAINS:
PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
>gi|85089|pir||B24872 retrovirus-related pol polyprotein
homolog - fruit fly (Drosophila melanogaster) transposon
297
Length = 1059
Score = 37.9 bits (86), Expect = 9e-08
Identities = 18/57 (31%), Positives = 32/57 (55%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
L+ F R ++ +L L+ C Y+DDI+++S + EH +++LV +L NL
Sbjct: 337 LRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANL 393
Score = 37.9 bits (86), Expect = 9e-08
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+YF+ +DL GF Q+ ++ E KTAF K+ ++ MP G +N P F
Sbjct: 295 QYFTTIDLAKGFHQIEMDEESISKTAF-STKSGHYEYLRMPFGLRNAPATF 344
>gi|4481822|emb|CAB38458| (AL035631) BACN32G13.a [Drosophila melanogaster]
Length = 889
Score = 37.9 bits (86), Expect = 9e-08
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEH 320
L+ IF R + +L + IG C+ Y+DD++++S+ +E H
Sbjct: 436 LRNAAGIFQRTIDDILLEQIGKFCYVYVDDVIIFSQDEEAH 476
Score = 37.9 bits (86), Expect = 9e-08
Identities = 23/57 (40%), Positives = 32/57 (55%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
IS L +L YFS LDL+ G+ QV L DR KT+F + + +F +P G +N
Sbjct: 383 ISMILGNLGKERYFSTLDLKSGYHQVVLAERDREKTSFSVNGGK-YEFKRLPFGLRN 438
>gi|1764013|emb|CAB06047| (Z83760) COS41.3 [Ciona intestinalis]
Length = 1209
Score = 37.5 bits (85), Expect = 2e-07
Identities = 20/53 (37%), Positives = 31/53 (57%)
Query: 210 LTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
++ F R ++ + D N ++Y+DDI V +T EEHD NLK + K+ NL
Sbjct: 571 VSAFQRIINRFIQDNHLNKVYAYLDDITVTGETLEEHDRNLKKLLVAAKRHNL 623
Score = 33.6 bits (75), Expect = 2e-07
Identities = 18/49 (36%), Positives = 26/49 (52%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+S LDL + Q+ L DRP TAF + + +L Q+ +P G N F
Sbjct: 527 YSSLDLRSAYHQIPLKDSDRPFTAF-EAEGQLYQYKRLPFGVTNGVSAF 574
Score = 22.7 bits (47), Expect = 2e-07
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 4 FVELDCYEIPNIQEI 48
F ELD Y +P+I+ I
Sbjct: 503 FTELDAYPLPSIESI 517
>gi|522302 (L35053) endonuclease [Magnaporthe grisea]
Length = 1199
Score = 46.5 bits (108), Expect = 1e-06
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F R ++ L + + C +Y+DDIL+YS+T+ EH+ +LKLV E L+K L
Sbjct: 375 FQRYINDSLREYLDVFCTAYLDDILIYSRTRTEHEEHLKLVLEALRKAGL 424
Score = 25.8 bits (55), Expect = 1e-06
Identities = 16/62 (25%), Positives = 28/62 (44%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
+ + L +L G ++FS +D+ F + + + TAF + L + MP G P
Sbjct: 315 VRETLNNLAGMKFFSKIDIVSAFNNIRIKKGEEYLTAF-RTRFGLYESLVMPFGLTGAPA 373
Query: 215 NF 220
F
Sbjct: 374 TF 375
>gi|1360613|emb|CAA65970| (X97304) ORF V [Strawberry vein banding virus]
Length = 708
Score = 43.4 bits (100), Expect = 1e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
LK IF R + L ++ C Y+DDI+V+SKT+EEH ++K+V R K +
Sbjct: 408 LKQAPAIFQRHMDESLSNMYPQFCAVYVDDIIVFSKTEEEHLGHVKIVLNRCKALGI 464
Score = 29.0 bits (63), Expect = 1e-06
Identities = 19/58 (32%), Positives = 28/58 (47%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L+ + G ++S D + GF+QV L E TAF + ++ MP G K P F
Sbjct: 359 LQRIGGKTFYSSFDCKSGFWQVRLAPETIQLTAFSCPQGH-YEWLVMPFGLKQAPAIF 415
>gi|3688328|emb|CAA12930| (AJ228325) reverse transcriptase [Ginkgo biloba]
Length = 138
Score = 45.7 bits (106), Expect = 1e-06
Identities = 26/64 (40%), Positives = 31/64 (47%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
I + L LHG +FS LDL G+ Q+ L D PK AF +F MP G N P
Sbjct: 22 IDELLDELHGACFFSKLDLRSGYHQIRLKEVDTPKIAFRTHDGH-YEFLVMPFGLTNAPS 80
Query: 215 NFSS 226
F S
Sbjct: 81 TFQS 84
Score = 26.6 bits (57), Expect = 1e-06
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNL 332
F ++ + C + + DDIL+YSKT +H +L
Sbjct: 82 FQSLMNQIFCLYLQRFILVFFDDILIYSKTWSDHLAHL 119
>gi|130594|sp|P19199|POL_COYMV PUTATIVE POLYPROTEIN [CONTAINS: COAT PROTEIN; PROTEASE ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|59050|emb|CAA37110|
(X52938) ORF 3, 216 kD protein [Commelina yellow mottle
virus]
Length = 1886
Score = 40.2 bits (92), Expect = 3e-06
Identities = 21/49 (42%), Positives = 29/49 (58%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+S DL+ GF+QV + E P TAF+ N+L ++ MP G KN P F
Sbjct: 1499 YSKFDLKSGFWQVAMEEESVPWTAFLAG-NKLYEWLVMPFGLKNAPAIF 1546
Score = 30.5 bits (67), Expect = 3e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
YIDDILV+S+T E+H +L + + K+ L
Sbjct: 1564 YIDDILVFSETAEQHSQHLYTMLQLCKENGL 1594
>gi|93553|pir||S11480 hypothetical protein 4 - Commelina yellow mottle virus
Length = 1424
Score = 40.2 bits (92), Expect = 3e-06
Identities = 21/49 (42%), Positives = 29/49 (58%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+S DL+ GF+QV + E P TAF+ N+L ++ MP G KN P F
Sbjct: 1037 YSKFDLKSGFWQVAMEEESVPWTAFLAG-NKLYEWLVMPFGLKNAPAIF 1084
Score = 30.5 bits (67), Expect = 3e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
YIDDILV+S+T E+H +L + + K+ L
Sbjct: 1102 YIDDILVFSETAEQHSQHLYTMLQLCKENGL 1132
>gi|321453|pir||S27938 hypothetical protein 3 - sugarcane bacilliform virus >gi|294839
(M89923) ORF3 [Sugarcane bacilliform virus]
Length = 1871
Score = 42.6 bits (98), Expect = 3e-06
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
I+ L+++ + FS DL+ GF QV ++ E P TAF N L ++ MP G KN P
Sbjct: 1338 INALLKNVARAKIFSKFDLKSGFHQVAMDEESIPLTAF-SAYNELYEWLVMPFGLKNAPA 1396
Query: 215 NFSSGSTHC 241
F C
Sbjct: 1397 IFQRKMDQC 1405
Score = 27.8 bits (60), Expect = 3e-06
Identities = 11/19 (57%), Positives = 16/19 (83%)
Query: 276 YIDDILVYSKTKEEHDTNL 332
YIDDILV+S+ +E+H +L
Sbjct: 1416 YIDDILVFSEDEEQHAEHL 1434
>gi|85056|pir||S02021 micropia polyprotein - fruit fly (Drosophila melanogaster)
(fragment)
Length = 1291
Score = 37.1 bits (84), Expect = 1e-05
Identities = 21/62 (33%), Positives = 29/62 (45%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
IS ++ L G YF+ LD+ GF Q+ ++ E TAF+ P G KN P
Sbjct: 530 ISDQIARLRGANYFTCLDMASGFHQIPIHPESVEYTAFV------------PDGLKNAPS 577
Query: 215 NF 220
F
Sbjct: 578 VF 579
Score = 31.7 bits (70), Expect = 1e-05
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKK----FN 365
LK ++F R + L DL + Y+DDI+V S TKE LK V L K FN
Sbjct: 572 LKNAPSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFN 631
Query: 366 L 368
L
Sbjct: 632 L 632
>gi|1030731|emb|CAA32198| (X14037) polyprotein [Drosophila melanogaster]
Length = 1053
Score = 37.1 bits (84), Expect = 1e-05
Identities = 21/62 (33%), Positives = 29/62 (45%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
IS ++ L G YF+ LD+ GF Q+ ++ E TAF+ P G KN P
Sbjct: 530 ISDQIARLRGANYFTCLDMASGFHQIPIHPESVEYTAFV------------PDGLKNAPS 577
Query: 215 NF 220
F
Sbjct: 578 VF 579
Score = 31.7 bits (70), Expect = 1e-05
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKK----FN 365
LK ++F R + L DL + Y+DDI+V S TKE LK V L K FN
Sbjct: 572 LKNAPSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFN 631
Query: 366 L 368
L
Sbjct: 632 L 632
>gi|3273747 (AF061575) reverse transcriptase [Candida albicans]
Length = 193
Score = 37.1 bits (84), Expect = 1e-05
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFSS 226
L SL YFS LDL++ F+QV + H+D K I FT +P G N+P F++
Sbjct: 69 LSSLTDSHYFSALDLKNAFYQVSI-HKDSIKYFGISTSEGNYCFTTLPFGAINSPTIFTN 127
Score = 31.3 bits (69), Expect = 1e-05
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 204 TILTIFHRGLHIVLCDLIGNGC-FSYIDDILVYSKTKEEHDTNLKLVEERLKK 359
TI T F R + L G C F Y+DDIL+++KT +H + L+ + E+L +
Sbjct: 123 TIFTNFVRQI------LEGIPCIFIYMDDILIHTKTLHDHMSLLRRIMEKLNE 169
>gi|557718 (U15406) gag, pol and env protein precursor [Caenorhabditis elegans]
Length = 2272
Score = 36.0 bits (81), Expect = 3e-05
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 216 IFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKK 359
+F + ++ DL+G F Y+DD+L+ SK E+H ++K R++K
Sbjct: 1160 LFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRK 1207
Score = 31.3 bits (69), Expect = 3e-05
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
I L+SL G + +++ D+ GF+Q+ L+ + + TAF + L ++ +P G +P
Sbjct: 1101 IEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIG-SELFEWNVLPFGLVISPA 1159
Query: 215 NF 220
F
Sbjct: 1160 LF 1161
>gi|1353074|sp|P34431|YL51_CAEEL HYPOTHETICAL PROTEIN F44E2.1 IN CHROMOSOME III
>gi|630629|pir||S44816 F44E2.1 protein - Caenorhabditis
elegans >gi|552067 (L23646) homology with S. pombe
protease; putative [Caenorhabditis elegans]
Length = 1745
Score = 36.0 bits (81), Expect = 3e-05
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 216 IFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKK 359
+F + ++ DL+G F Y+DD+L+ SK E+H ++K R++K
Sbjct: 792 LFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRK 839
Score = 31.3 bits (69), Expect = 3e-05
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
I L+SL G + +++ D+ GF+Q+ L+ + + TAF + L ++ +P G +P
Sbjct: 733 IEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIG-SELFEWNVLPFGLVISPA 791
Query: 215 NF 220
F
Sbjct: 792 LF 793
>gi|331554 (M90543) reverse transcriptase [Cauliflower mosaic virus]
Length = 680
Score = 36.7 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 328 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 384
Score = 29.7 bits (65), Expect = 5e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 399 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 432
>gi|840738|emb|CAA55974| (X79465) ORF V [Cauliflower mosaic virus]
Length = 680
Score = 36.7 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 328 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 384
Score = 29.7 bits (65), Expect = 5e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 399 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 432
>gi|130590|sp|P03555|POL_CAMVC ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ]
Length = 679
Score = 36.7 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 327 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 383
Score = 29.7 bits (65), Expect = 5e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 398 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 431
>gi|130592|sp|P03554|POL_CAMVS ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ] >gi|75491|pir||QQCV5
hypothetical protein 5 - cauliflower mosaic virus
(strains Strasbourg, CM1841 and D/H)
>gi|58826|emb|CAA23460| (V00141) reading frame (V)
[Cauliflower mosaic virus]
Length = 679
Score = 36.7 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 327 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 383
Score = 29.7 bits (65), Expect = 5e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 398 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 431
>gi|400820|sp|Q02964|POL_CAMVE ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ] >gi|293185 (M90542) reverse
transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 36.7 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 327 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 383
Score = 29.7 bits (65), Expect = 5e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 398 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 431
>gi|484342|pir||JN0497 hypothetical 78.7K protein - cauliflower mosaic virus (isolate BBC)
Length = 679
Score = 36.7 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 327 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 383
Score = 29.7 bits (65), Expect = 5e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 398 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 431
>gi|130591|sp|P03556|POL_CAMVD ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ]
Length = 674
Score = 36.7 bits (83), Expect = 5e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 322 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 378
Score = 29.7 bits (65), Expect = 5e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 393 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 426
>gi|1905852 (U89994) reverse transcriptase polyprotein [Drosophila
melanogaster]
Length = 1041
Score = 46.5 bits (108), Expect = 8e-05
Identities = 23/66 (34%), Positives = 38/66 (56%)
Query: 171 CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEER 350
C LP LK+ +I F R + V+ D IG C+ Y+DD++++S E+H ++ V +R
Sbjct: 313 CRLPFGLKNAPSI---FQRAIDDVVRDRIGKSCYVYVDDVIIFSNGIEDHVNDVAWVLDR 369
Query: 351 LKKFNL 368
L N+
Sbjct: 370 LSGANM 375
Score = 38.3 bits (87), Expect = 0.022
Identities = 23/58 (39%), Positives = 31/58 (52%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L +L +F+ LDL+ F Q+ L +DR KTAF N +F +P G KN P F
Sbjct: 270 LSNLGKARFFTTLDLKSAFHQILLAEKDRAKTAF-SVGNGKYEFCRLPFGLKNAPSIF 326
>gi|3183637|emb|CAA05264| (AJ002234) polyprotein, cleavage products include viral coat protein
and proteins with homology to an aspartic protease,
reverse transcriptase and RNase H [banana streak virus]
Length = 1832
Score = 36.7 bits (83), Expect = 8e-05
Identities = 24/69 (34%), Positives = 36/69 (51%), Gaps = 2/69 (2%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAF--IDDKNRLMQFTCMPQGFKNN 208
I+ ++ + + +S DL+ GF QV ++ E P TAF ID L ++ MP G KN
Sbjct: 1320 INTIIKRIGNAKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDG---LYEWLVMPFGLKNA 1376
Query: 209 PDNFSSGSTHC 241
P F +C
Sbjct: 1377 PAIFQRKMDNC 1387
Score = 29.0 bits (63), Expect = 8e-05
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 276 YIDDILVYSKTKEEHDTNLK 335
YIDDILV+S+T +H +LK
Sbjct: 1398 YIDDILVFSETIHQHKEHLK 1417
>gi|2995405|emb|CAA73042| (Y12432) polyprotein [Ananas comosus]
Length = 871
Score = 33.6 bits (75), Expect = 8e-05
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 56 LHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L G +S +DL+ G+ Q+ + ED KTAF + +F MP G N P F
Sbjct: 97 LQGSCVYSKIDLQSGYHQLKIKPEDVSKTAF-RTRYGHYEFAVMPFGLTNAPTAF 150
Score = 32.1 bits (71), Expect = 8e-05
Identities = 13/31 (41%), Positives = 24/31 (76%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+IDDILVYS++ +H+ +L++V + L++ L
Sbjct: 169 FIDDILVYSRSDADHEEHLRIVLQVLREKEL 199
>gi|555885 (U13988) reverse transcriptase [Peanut chlorotic streak
caulimovirus]
Length = 694
Score = 42.2 bits (97), Expect = 8e-05
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+FS LD + GF Q+ L+ E +P TAF +++ MP G K P F
Sbjct: 276 WFSTLDAKSGFLQLRLDEETKPLTAFSCPPQMHLEYNVMPMGLKQAPSQF 325
Score = 23.5 bits (49), Expect = 8e-05
Identities = 10/16 (62%), Positives = 15/16 (93%), Gaps = 1/16 (6%)
Query: 273 SYIDDILVYSK-TKEEH 320
+YIDDI+V++K TK+ H
Sbjct: 342 AYIDDIIVFTKGTKDYH 358
>gi|130669|sp|P15629|POL_SOCMV ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ] >gi|76791|pir||JS0375
hypothetical 85.8K protein - soybean chlorotic mottle
virus >gi|58839|emb|CAA33830| (X15828) ORF V put.
reverse transcriptase (AA 1-741) [Soybean chlorotic
mottle virus]
Length = 741
Score = 32.8 bits (73), Expect = 1e-04
Identities = 17/61 (27%), Positives = 29/61 (46%)
Query: 29 YQISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNN 208
YQ + G +FS LD + G++Q+ L+ +P TAF + ++ + G K
Sbjct: 277 YQEKILSEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQA 336
Query: 209 P 211
P
Sbjct: 337 P 337
Score = 32.5 bits (72), Expect = 1e-04
Identities = 13/29 (44%), Positives = 26/29 (88%), Gaps = 1/29 (3%)
Query: 273 SYIDDILVYSK-TKEEHDTNLKLVEERLKK 359
+YIDDIL+++K +KE+H ++++V +R+K+
Sbjct: 357 AYIDDILIFTKGSKEQHVNDVRIVLQRIKE 386
>gi|266827|sp|Q00962|POL_CAMVN ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ] >gi|331571 (M90541) reverse
transcriptase [Cauliflower mosaic virus]
>gi|445598|prf||1909346E reverse transcriptase
[Cauliflower mosaic virus]
Length = 680
Score = 36.7 bits (83), Expect = 1e-04
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 328 LTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 384
Score = 28.6 bits (62), Expect = 1e-04
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDI+V+S +E+H ++ ++ ++ + +
Sbjct: 399 CCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGI 432
>gi|2146903|pir||S72396 hypothetical protein 2 - fruit fly (Drosophila subobscura)
retrotransposon gypsy >gi|1237205|emb|CAA51084| (X72390)
ORF2 [Drosophila subobscura] >gi|1588533|prf||2208454B
ORF 2 [Drosophila subobscura]
Length = 1009
Score = 45.3 bits (105), Expect = 2e-04
Identities = 22/66 (33%), Positives = 39/66 (58%)
Query: 171 CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEER 350
C LP L++ +I F R + +L + IG CF Y+DD++++SK + EH ++ +V +
Sbjct: 281 CRLPFGLRNASSI---FQRAIDDILREHIGKICFVYVDDVIIFSKNETEHVQHINIVLKC 337
Query: 351 LKKFNL 368
L N+
Sbjct: 338 LLDANM 343
Score = 37.1 bits (84), Expect = 0.049
Identities = 20/53 (37%), Positives = 30/53 (55%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
L SL +YF+ LDL+ G+ Q+ L DR KT+F + +F +P G +N
Sbjct: 238 LASLGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGK-YEFCRLPFGLRN 289
>gi|2146902|pir||S64734 hypothetical protein 2 - fruit fly (Drosophila subobscura)
retrotransposon gypsy
Length = 1009
Score = 45.3 bits (105), Expect = 2e-04
Identities = 22/66 (33%), Positives = 39/66 (58%)
Query: 171 CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEER 350
C LP L++ +I F R + +L + IG CF Y+DD++++SK + EH ++ +V +
Sbjct: 281 CRLPFGLRNASSI---FQRAIDDILREHIGKICFVYVDDVIIFSKNETEHVQHINIVLKC 337
Query: 351 LKKFNL 368
L N+
Sbjct: 338 LLDANM 343
Score = 37.5 bits (85), Expect = 0.038
Identities = 21/57 (36%), Positives = 31/57 (53%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
I L SL +YF+ LDL+ G+ Q+ L DR KT+F + +F +P G +N
Sbjct: 234 IPMSLASLGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGK-YEFCRLPFGLRN 289
>gi|4581164|gb|AAD24647|AC006220_3 (AC006220) putative polyprotein [Arabidopsis thaliana]
Length = 780
Score = 34.4 bits (77), Expect = 2e-04
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
I + L G +S +DL G+ QV ++ D KTAF N ++ MP G N P
Sbjct: 116 IEDLMDELGGSNVYSKIDLRAGYHQVRMDPLDIHKTAF-KTHNGHYEYLVMPFGLTNAPA 174
Query: 215 NFSS 226
+F S
Sbjct: 175 SFQS 178
Score = 30.1 bits (66), Expect = 2e-04
Identities = 13/31 (41%), Positives = 21/31 (66%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+ DDIL+YS + EEH +L+ V E ++ +L
Sbjct: 195 FFDDILIYSTSMEEHKKHLEAVFEVMRVHHL 225
>gi|130600|sp|P09523|POL_FMVD ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ] >gi|76782|pir||S01283
hypothetical protein 5 - figwort mosaic virus
>gi|58813|emb|CAA29527| (X06166) ORF V (AA 1-666)
[Figwort mosaic virus]
Length = 666
Score = 34.0 bits (76), Expect = 2e-04
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L L G FS D + GF+QV L+ E + TAF + Q+ +P G K P F
Sbjct: 320 LTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGH-FQWKVVPFGLKQAPSIF 376
Score = 30.1 bits (66), Expect = 2e-04
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNG----CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFN 365
LK +IF R + L NG C Y+DDI+V+S ++ +H ++ V + ++K+
Sbjct: 369 LKQAPSIFQRHMQTAL-----NGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYG 423
Query: 366 L 368
+
Sbjct: 424 I 424
>gi|3319351 (AF077407) contains similarity to reverse transcriptases (PFam:
rvt.hmm, score: 116.22) [Arabidopsis thaliana]
Length = 1322
Score = 44.5 bits (103), Expect = 3e-04
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I + D R+ + T+ G L F R ++ V + + +IDDILVY
Sbjct: 623 IAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 682
Query: 300 SKTKEEHDTNLKLVEERLKKFNL 368
SK+ EEH+ +L+ V+E+L++ L
Sbjct: 683 SKSPEEHEVHLRRVKEKLREQKL 705
Score = 32.1 bits (71), Expect = 1.7
Identities = 21/63 (33%), Positives = 29/63 (45%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I + L L G FS +DL + Q+ + D KTAF + +F MP G N P
Sbjct: 595 RIDELLDQLRGATCFSKIDLTSDYHQIPIAEADVRKTAF-RTRYGHFEFVVMPFGLTNAP 653
Query: 212 DNF 220
F
Sbjct: 654 AAF 656
>gi|283734|pir||S26840 retrovirus-related pol polyprotein - fruit fly (Drosophila virilis)
transposon gypsy >gi|157587 (M38438) reverse
transcriptase endonuclease [Drosophila virilis]
Length = 1009
Score = 44.5 bits (103), Expect = 3e-04
Identities = 22/66 (33%), Positives = 39/66 (58%)
Query: 171 CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEER 350
C LP L++ +I F R + +L + IG CF Y+DD++++SK + EH ++ +V +
Sbjct: 281 CRLPFGLRNASSI---FQRAIDDILREHIGKICFVYVDDVIIFSKNETEHLQHINIVLKC 337
Query: 351 LKKFNL 368
L N+
Sbjct: 338 LIDANM 343
Score = 36.0 bits (81), Expect = 0.11
Identities = 19/53 (35%), Positives = 30/53 (55%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
L +L +YF+ LDL+ G+ Q+ L DR KT+F + +F +P G +N
Sbjct: 238 LANLGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGK-YEFCRLPFGLRN 289
>gi|130407|sp|P10394|POL4_DROME RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412 [CONTAINS:
PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
>gi|74644|pir||GNFF42 retrovirus-related pol polyprotein
- fruit fly (Drosophila melanogaster) transposon 412
>gi|1335652|emb|CAA27750| (X04132) ORF 4 (RNA2)
[Drosophila melanogaster]
Length = 1237
Score = 38.3 bits (87), Expect = 3e-04
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L L +YFS LDL GF Q+ L+ R T+F N +FT +P G K P
Sbjct: 392 RIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSF-STSNGSYRFTRLPFGLKIAP 450
Query: 212 DNF 220
++F
Sbjct: 451 NSF 453
Score = 25.4 bits (54), Expect = 3e-04
Identities = 15/57 (26%), Positives = 28/57 (48%)
Query: 198 LKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
LK F R + I + + F Y+DD++V +++ NL V + +++NL
Sbjct: 446 LKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNL 502
>gi|665934 (U20341) ORF III [Cassava vein mosaic virus] >gi|1399884 (U59751)
ORF 3 [Cassava vein mosaic virus]
Length = 652
Score = 32.8 bits (73), Expect = 3e-04
Identities = 19/66 (28%), Positives = 33/66 (49%), Gaps = 3/66 (4%)
Query: 23 MKYQISKRLRSLHGY---EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQ 193
+KY I + +H Y+S D + GF+ + L + + TAF + Q+ +P
Sbjct: 277 VKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEEDSKKYTAFTVPQG-YYQWKVLPF 335
Query: 194 GFKNNPDNF 220
G+ N+P F
Sbjct: 336 GYHNSPSIF 344
Score = 30.9 bits (68), Expect = 3e-04
Identities = 13/19 (68%), Positives = 16/19 (83%)
Query: 276 YIDDILVYSKTKEEHDTNL 332
YIDDILV+SKT EEH ++
Sbjct: 362 YIDDILVFSKTIEEHKIHI 380
>gi|331593 (M32815) reverse transcriptase [Cauliflower mosaic virus]
Length = 155
Score = 34.0 bits (76), Expect = 3e-04
Identities = 19/49 (38%), Positives = 26/49 (52%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
FS D + GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 3 FSSFDCKSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 50
Score = 29.7 bits (65), Expect = 3e-04
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 65 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 98
>gi|347871 (L14546) polyprotein [Cacao swollen shoot virus]
Length = 1834
Score = 37.1 bits (84), Expect = 4e-04
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFSS 226
L+ + + FS DL+ GF QV + E P TAF + L ++ MP G KN P F
Sbjct: 1369 LKRVGNKKVFSKFDLKSGFHQVAMAEESIPWTAFWVPQG-LYEWLVMPFGLKNAPAVFQR 1427
Query: 227 GSTHC 241
C
Sbjct: 1428 KMDQC 1432
Score = 26.2 bits (56), Expect = 4e-04
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 276 YIDDILVYSKTKEEHDTNLKLV 341
YIDDILV+S+ EH ++ ++
Sbjct: 1443 YIDDILVFSENMAEHTKHIGIM 1464
>gi|509002 (M10376) ORF5; putative [Cauliflower mosaic virus]
Length = 675
Score = 33.6 bits (75), Expect = 4e-04
Identities = 20/58 (34%), Positives = 28/58 (47%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L + G + FS GF+QV L+ E RP TAF + ++ +P G K P F
Sbjct: 323 LTLIRGKKIFSSFHCNSGFWQVLLDQESRPLTAFTCPQGH-YEWNVVPFGLKQAPSIF 379
Score = 29.7 bits (65), Expect = 4e-04
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 267 CFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
C Y+DDILV+S +E+H ++ ++ ++ + +
Sbjct: 394 CCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGI 427
>gi|1542877|emb|CAA65152| (X95908) orf [Drosophila melanogaster]
Length = 1494
Score = 32.5 bits (72), Expect = 5e-04
Identities = 18/49 (36%), Positives = 27/49 (54%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
F+ LDL++GFF V + E T+F+ + ++ MP G KN P F
Sbjct: 802 FTKLDLKNGFFHVHVKKESIKYTSFVTPLGQ-YEWLRMPFGLKNAPSVF 849
Score = 30.5 bits (67), Expect = 5e-04
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 198 LKTILTIFHRGLHIVLCDLIG-NGCFSYIDDILVYSKTKEEHDTNLKLVEERL 353
LK ++F R ++ + D+I N Y+DDIL+ ++ EH LK + +RL
Sbjct: 842 LKNAPSVFQRFVNKIFADMIRENKVVVYMDDILLATENINEHLETLKEIFKRL 894
>gi|3810595 (AC005398) putative reverse-transcriptase [Arabidopsis thaliana]
Length = 1328
Score = 43.4 bits (100), Expect = 7e-04
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I + D R+ + T+ G L F R ++ V +++ +IDDILVY
Sbjct: 566 IAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVY 625
Query: 300 SKTKEEHDTNLKLVEERLKKFNL 368
SK+ EEH+ +L+ V E+L++ L
Sbjct: 626 SKSLEEHEVHLRRVMEKLREQKL 648
Score = 32.1 bits (71), Expect = 1.7
Identities = 21/63 (33%), Positives = 29/63 (45%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I + L L G FS +DL G+ + + D KTAF + +F MP G N P
Sbjct: 538 RIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAF-RTRYGHFEFVVMPFGLTNAP 596
Query: 212 DNF 220
F
Sbjct: 597 AAF 599
>gi|4263052|gb|AAD15321| (AC005142) putative reverse transcriptase [Arabidopsis thaliana]
Length = 839
Score = 43.4 bits (100), Expect = 7e-04
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 114 D*ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDIL 293
D + + D R+ + T+ G L F R ++ V + + +IDDIL
Sbjct: 514 DLLAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDIL 573
Query: 294 VYSKTKEEHDTNLKLVEERLKKFNL 368
VYSK+ EEH+ +L+ V E+L++ L
Sbjct: 574 VYSKSPEEHEVHLRRVMEKLREQKL 598
>gi|1335769 (U26458) gag-pol polyprotein [Snakehead retrovirus]
Length = 2017
Score = 33.2 bits (74), Expect = 8e-04
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 65 YEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
Y+ +S LD+ +GF+ + L E + AF D + +T +PQGF +P F
Sbjct: 889 YQVYSSLDISNGFWSIRLEEECQYLFAFTFDTQQ-YTWTRLPQGFHASPGIF 939
Score = 29.0 bits (63), Expect = 8e-04
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 216 IFHRGLHIVLCD----LIGNGC--FSYIDDILVYSKTKEEHDTNLKLVEERLK 356
IFH+ L+ L + GC Y+DDIL+ S+ ++ H +L ++ + LK
Sbjct: 938 IFHQALYNGLASCKTAIESQGCKLLQYVDDILLMSEDRDHHLRSLAILLQGLK 990
>gi|4544430|gb|AAD22339|AC006955_25 (AC006955) putative reverse transcriptase [Arabidopsis thaliana]
Length = 1411
Score = 43.0 bits (99), Expect = 9e-04
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I + D R+ + T+ G L F R ++ V + + +IDDILVY
Sbjct: 617 IAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 676
Query: 300 SKTKEEHDTNLKLVEERLKKFNL 368
SK+ EEH+ +L+ V E+L++ L
Sbjct: 677 SKSPEEHEVHLRRVMEKLREQKL 699
Score = 32.5 bits (72), Expect = 1.3
Identities = 21/63 (33%), Positives = 29/63 (45%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I + L L G FS +DL G+ Q+ + D KTAF + +F MP N P
Sbjct: 589 RIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF-RTRYGHFEFVVMPFALTNAP 647
Query: 212 DNF 220
F
Sbjct: 648 AAF 650
>gi|3319363 (AF077408) contains similarity to reverse transcriptase (Pfam:
rvt.hmm, score: 33.26) [Arabidopsis thaliana]
Length = 973
Score = 42.6 bits (98), Expect = 0.001
Identities = 26/80 (32%), Positives = 41/80 (50%)
Query: 129 TDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKT 308
TD R+ + +T+ G L T F + ++ V D + +IDDILVYSK+
Sbjct: 286 TDVRKTAFLTRYGHFEFVVMPFGLTNAPTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKS 345
Query: 309 KEEHDTNLKLVEERLKKFNL 368
E H +L+ V E+L++ L
Sbjct: 346 WEAHQEHLRAVLEQLREHEL 365
>gi|1515325 (U29471) polypeptide [Nasonia vitripennis]
Length = 292
Score = 34.8 bits (78), Expect = 0.001
Identities = 19/58 (32%), Positives = 23/58 (38%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
LR + Y + LD F Q+ L P TAF L +F MP G P F
Sbjct: 150 LRKIQHARYITALDCSGAFLQIPLTERSIPITAFTVPGLGLFEFVRMPYGLAGGPATF 207
Score = 26.6 bits (57), Expect = 0.001
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 270 FSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F+Y+DDI++ + T +H L L+ +R+ + L
Sbjct: 224 FAYLDDIIIATDTFSDHIKWLTLILKRINEAGL 256
>gi|1515331 (U29472) polyprotein [Nasonia vitripennis]
Length = 281
Score = 34.8 bits (78), Expect = 0.001
Identities = 19/58 (32%), Positives = 23/58 (38%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
LR + Y + LD F Q+ L P TAF L +F MP G P F
Sbjct: 150 LRKIQHARYITALDCSGAFLQIPLTERSIPITAFTVPGLGLFEFVRMPYGLAGGPATF 207
Score = 26.6 bits (57), Expect = 0.001
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 270 FSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F+Y+DDI++ + T +H L L+ +R+ + L
Sbjct: 224 FAYLDDIIIATDTFSDHIKWLTLILKRINEAGL 256
>gi|1515327 (U29470) polyprotein [Nasonia vitripennis]
Length = 281
Score = 34.8 bits (78), Expect = 0.001
Identities = 19/58 (32%), Positives = 23/58 (38%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
LR + Y + LD F Q+ L P TAF L +F MP G P F
Sbjct: 150 LRKIQHARYITALDCSGAFLQIPLTERSIPITAFTVPGLGLFEFVRMPYGLAGGPATF 207
Score = 26.6 bits (57), Expect = 0.001
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 270 FSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F+Y+DDI++ + T +H L L+ +R+ + L
Sbjct: 224 FAYLDDIIIATDTFSDHIKWLTLILKRINEAGL 256
>gi|130602|sp|P21414|POL_GALV POL POLYPROTEIN [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ;
ENDONUCLEASE] >gi|74605|pir||GNLJGL pol polyprotein -
gibbon ape leukemia virus >gi|332612 (M26927) pol
polyprotein [Gibbon leukemia virus]
Length = 1165
Score = 40.2 bits (92), Expect = 0.002
Identities = 27/63 (42%), Positives = 43/63 (67%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAF---IDD 157
+I+KR++ +H Y ++S+LDL+D FF + L+ +P AF +
Sbjct: 234 EINKRVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLHPNSQPLFAFEWKDPE 293
Query: 158 KNRLMQ--FTCMPQGFKNNPDNF 220
K Q +T +PQGFKN+P F
Sbjct: 294 KGNTGQLTWTRLPQGFKNSPTLF 316
Score = 20.8 bits (42), Expect = 0.002
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKK 359
Y+DD+LV + T E+ + + + L K
Sbjct: 339 YVDDLLVAAPTYEDCKKGTQKLLQELSK 366
>gi|1515333 (U29473) polyprotein [Nasonia vitripennis]
Length = 275
Score = 34.8 bits (78), Expect = 0.002
Identities = 19/58 (32%), Positives = 23/58 (38%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
LR + Y + LD F Q+ L P TAF L +F MP G P F
Sbjct: 144 LRKIQHARYITALDCSGAFLQIPLTERSIPITAFTVPGLGLFEFVRMPYGLAGGPATF 201
Score = 26.2 bits (56), Expect = 0.002
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 270 FSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F+Y+DDI++ + T +H L L+ +R+ + L
Sbjct: 218 FAYLDDIIIATDTFSDHIKWLTLILKRIHEAGL 250
>gi|4235644 (AF119040) polyprotein [Lycopersicon esculentum]
Length = 1542
Score = 41.8 bits (96), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I + D+ + + +T+ G L F ++ VL D + + Y+DDI++Y
Sbjct: 712 IAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFCNLMNNVLFDYLDDFVVVYLDDIVIY 771
Query: 300 SKTKEEHDTNLKLVEERLKKFNL 368
S+T EEH +L LV +L+K+ L
Sbjct: 772 SRTLEEHVNHLSLVLSQLRKYTL 794
Score = 33.6 bits (75), Expect = 0.56
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
+F+ LDL G++QV + D PKT + + +F MP G N P F
Sbjct: 697 WFTKLDLRAGYWQVRIAEGDEPKTTCV-TRYGSYEFLVMPFGLTNAPATF 745
>gi|4539436|emb|CAB40024| (AL049523) putative reverse-transcriptase-like protein [Arabidopsis
thaliana]
Length = 1240
Score = 41.8 bits (96), Expect = 0.002
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I + D R+ + T+ G L +F R ++ V + + +IDDILVY
Sbjct: 591 IAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVY 650
Query: 300 SKTKEEHDTNLKLVEERLKKFNL 368
SK+ EE + +L+ V E+L++ L
Sbjct: 651 SKSPEEQEVHLRRVMEKLREQKL 673
Score = 34.4 bits (77), Expect = 0.33
Identities = 22/63 (34%), Positives = 30/63 (46%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I + L L G FS +DL G+ Q+ + D KTAF + +F MP G N P
Sbjct: 563 RIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF-RTRYGHFEFVVMPFGLTNAP 621
Query: 212 DNF 220
F
Sbjct: 622 AVF 624
>gi|1658457 (U75248) reverse transcriptase [Gossypium barbadense]
Length = 103
Score = 41.4 bits (95), Expect = 0.003
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
F R ++ VL IG C Y DDILVYS++ ++H +L+ V + L+K NL
Sbjct: 33 FMRLMNHVLRAFIGKFCVVYFDDILVYSRSLDDHLKHLRAVLDVLRKENL 82
>gi|3510505 (AF030881) pol polyprotein [Fugu rubripes]
Length = 1187
Score = 40.6 bits (93), Expect = 0.004
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I K D+ + + T G L +F ++ VL D+I Y+DDIL++
Sbjct: 377 IRKGDEWKTAFNTHLGHFEYLVMPFGLSNAPAVFQELVNDVLRDMINVFVVVYLDDILIF 436
Query: 300 SKTKEEHDTNLKLVEERL 353
S+T EEH +++LV +RL
Sbjct: 437 SRTMEEHHQHVRLVLQRL 454
>gi|4206306 (AF049110) prpol [Zea mays]
Length = 1317
Score = 40.6 bits (93), Expect = 0.004
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
E SLLD G+ Q+ + ED PKT+FI + MP+G KN +FS
Sbjct: 397 ELMSLLDCYSGYHQIWMKREDEPKTSFITPSGTYC-YLRMPEGLKNAGGSFS 447
Score = 30.9 bits (68), Expect = 3.7
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 126 KTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSK 305
+ D+ + S +T +G + LK F R VL IG +Y+DDI+V S
Sbjct: 415 REDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKST 474
Query: 306 TKEEHDTNLK 335
+E H +L+
Sbjct: 475 KQENHIADLQ 484
>gi|2352039 (U94514) pol polyprotein [bovine syncytial virus]
Length = 1220
Score = 33.6 bits (75), Expect = 0.005
Identities = 22/60 (36%), Positives = 33/60 (54%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFSS 226
L +L+ Y S LDL +GF+ + ED TAF + +T +PQGF N+P F++
Sbjct: 236 LNTLYRGPYKSTLDLANGFWAHPIKPEDYWITAFTWG-GKTYCWTVLPQGFLNSPALFTA 294
Score = 25.8 bits (55), Expect = 0.005
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERL 353
Y+DD+ V S T++EH L+ + RL
Sbjct: 309 YVDDVYVSSATEQEHLDILETIFNRL 334
>gi|294962 (L06042) reverse transcriptase [Simian immunodeficiency virus]
Length = 1031
Score = 40.2 bits (92), Expect = 0.006
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSS 226
+++DL+D ++ V L+ E RP TAF QFT +PQG+K +P F S
Sbjct: 289 TIIDLKDAYYSVPLDKEFRPYTAFTVPSINNASPGERYQFTVLPQGWKGSPTIFQS 344
>gi|4206309 (AF049112) prpol [Zea mays]
Length = 479
Score = 40.2 bits (92), Expect = 0.006
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
E SLLD G+ Q+ + ED PKT+FI + MP+G KN +FS
Sbjct: 18 ELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYC-YLRMPEGLKNAGGSFS 68
Score = 32.1 bits (71), Expect = 1.7
Identities = 22/70 (31%), Positives = 33/70 (46%)
Query: 126 KTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSK 305
K D+ + S +T +G + LK F R VL IG +Y+DDI+V S
Sbjct: 36 KEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKST 95
Query: 306 TKEEHDTNLK 335
+E H +L+
Sbjct: 96 KQENHIADLQ 105
>gi|521193 (M37656) ORF2 [Drosophila ananassae]
Length = 132
Score = 40.2 bits (92), Expect = 0.006
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 225 RGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
R ++ +L LI C Y+DD++++S + +EH +L+LV E+L + NL
Sbjct: 2 RCMNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLSESNL 49
>gi|3810596 (AC005398) reverse-transcriptase-like protein [Arabidopsis
thaliana]
Length = 945
Score = 39.5 bits (90), Expect = 0.010
Identities = 23/64 (35%), Positives = 32/64 (49%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
+ L L+G YF+ LDL G+ QV ++ D PK AF N ++ MP G N P
Sbjct: 558 VDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAF-QTHNGHYEYLVMPFGLCNAPS 616
Query: 215 NFSS 226
F +
Sbjct: 617 TFQA 620
>gi|1890639 (U58991) Pol [Simian immunodeficiency virus]
Length = 1067
Score = 39.5 bits (90), Expect = 0.010
Identities = 21/48 (43%), Positives = 32/48 (65%), Gaps = 6/48 (12%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNRL-----MQFTCMPQGFKNNPDNF 220
++LD+ D ++ + L+ E RP TAF I N + QF C+PQG+K +P F
Sbjct: 330 TVLDIGDAYYSIPLDPEFRPYTAFTIPQVNNVGPGIRYQFNCLPQGWKGSPTIF 383
>gi|3097273|emb|CAA74901| (Y14570) gag-pro-pol polyprotein [Simian T-cell lymphotropic virus
type 2]
Length = 1468
Score = 36.0 bits (81), Expect = 0.011
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNF 220
Y +DL D FFQ+ L + +P AF + +T +PQGFKN+P F
Sbjct: 680 YLQTIDLTDAFFQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSPTLF 735
Score = 22.3 bits (46), Expect = 0.011
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 276 YIDDILVYSKTKEE 317
Y+DDIL+ S T+EE
Sbjct: 758 YMDDILLASPTQEE 771
>gi|3135479 (AF049230) Pol [Dictyostelium discoideum]
Length = 1116
Score = 39.1 bits (89), Expect = 0.013
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
FS D+ G+FQV +N E TAFI + ++T MPQG N+P F+
Sbjct: 189 FSKFDMIMGYFQVLINPEHAKYTAFITHIGK-FEYTRMPQGLVNSPSTFA 237
>gi|2367675 (AF017040) Pol [Dictyostelium discoideum]
Length = 1077
Score = 39.1 bits (89), Expect = 0.013
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
FS D+ G+FQV +N E TAFI + ++T MPQG N+P F+
Sbjct: 189 FSKFDMIMGYFQVLINPEHAKYTAFITHIGK-FEYTRMPQGLVNSPSTFA 237
>gi|2323287 (AF009668) polyprotein [multiple sclerosis associated retrovirus]
Length = 768
Score = 38.7 bits (88), Expect = 0.017
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQ--FTCMPQGFKNNPDNF 220
E+F++LDL+D FF + + + + AF D N Q +T +PQGF+++P F
Sbjct: 245 EWFTVLDLKDAFFCIPVRPDSQFLFAFEDPLNPTSQLTWTVLPQGFRDSPHLF 297
>gi|257758|bbs|119658 reverse transcriptase homolog {HOMORT7, retrotransposon} [human,
Peptide Transposon Partial, 116 aa]
Length = 116
Score = 38.3 bits (87), Expect = 0.022
Identities = 21/54 (38%), Positives = 32/54 (58%), Gaps = 5/54 (9%)
Query: 59 HGYEYFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
H + +S+LDL+D FF + L + +P AF + +T +PQGFKN+P F
Sbjct: 36 HRHTAYSVLDLKDAFFAIPLAPKSQPIFAFEWTDPGSGDTTQLTWTQLPQGFKNSPTLF 94
>gi|4325361|gb|AAD17358| (AF128395) contains similarity to reverse transcriptase (Pfam:
PF00078, Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc
fingers (Pfam: PF00098, Score=18.3, E=0.024, N=2)
[Arabidopsis thaliana]
Length = 901
Score = 37.9 bits (86), Expect = 0.029
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 219 FHRGLHIVLCDLIGNGCFSYIDDILVYSKTKEEHDTNLKLVEERL 353
F R ++ V + + +IDDILVYSK+ EEH+ +L V E+L
Sbjct: 513 FMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLMRVMEKL 557
>gi|4115365 (AC005957) reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1329
Score = 37.1 bits (84), Expect = 0.049
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
I + + S G+E S +D G+ Q+ +N ED+ KT+FI + + MP G KN
Sbjct: 506 IDRLVESTTGHEMLSFMDAFSGYNQILMNPEDQEKTSFITECG-TYYYKVMPFGLKN 561
>gi|4432807|gb|AAD20658| (AC006570) putative polyprotein [Arabidopsis thaliana]
Length = 1611
Score = 37.1 bits (84), Expect = 0.049
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I TD R+ + T+ L F + ++ V D + +I+DILVY
Sbjct: 759 IEPTDVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVY 818
Query: 300 SKTKEEHDTNLKLVEERLKKFNL 368
SK+ E H +L+ V ERL++ L
Sbjct: 819 SKSWEAHQEHLRAVLERLREHEL 841
Score = 36.4 bits (82), Expect = 0.085
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I + + L G ++FS +DL G+ Q+ + D KTAF + +F MP G N P
Sbjct: 731 RIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDH-FEFVVMPFGLTNAP 789
Query: 212 DNF 220
F
Sbjct: 790 AAF 792
>gi|4205699 (AF033164) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 37.1 bits (84), Expect = 0.049
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F SG T
Sbjct: 10 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSGMT 68
>gi|1346746|sp|P03363|POL_HTLV2 POL POLYPROTEIN [CONTAINS: REVERSE TRANSCRIPTASE ; RIBONUCLEASE H ]
>gi|329563|gb|AAB59885.1| (M10060) pol polyprotein
[Human T-cell lymphotropic virus type 2]
Length = 982
Score = 34.0 bits (76), Expect = 0.051
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNF 220
+ +DL D FFQ+ L + +P AF + +T +PQGFKN+P F
Sbjct: 194 HLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLF 249
Score = 21.9 bits (45), Expect = 0.051
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 276 YIDDILVYSKTKEE 317
Y+DDIL+ S T EE
Sbjct: 272 YMDDILLASPTNEE 285
>gi|74614|pir||GNLJH2 pol polyprotein - human T-cell lymphotropic virus type 2
Length = 982
Score = 34.0 bits (76), Expect = 0.051
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNF 220
+ +DL D FFQ+ L + +P AF + +T +PQGFKN+P F
Sbjct: 194 HLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLF 249
Score = 21.9 bits (45), Expect = 0.051
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 276 YIDDILVYSKTKEE 317
Y+DDIL+ S T EE
Sbjct: 272 YMDDILLASPTNEE 285
>gi|3695395 (AF096372) contains similarity to reverse transcriptase (Pfam:
PF00078 rvt, E=4.3e-08) [Arabidopsis thaliana]
Length = 637
Score = 33.2 bits (74), Expect = 0.067
Identities = 16/48 (33%), Positives = 27/48 (55%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQF 178
I + + S G E + +D G+ Q+ +N ED+ KT+FI D+ Q+
Sbjct: 415 IDRLVESTAGNELLTFMDAFLGYNQIMMNPEDQEKTSFITDRGATYQW 462
Score = 22.3 bits (46), Expect = 0.067
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 279 IDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
IDD LV S KE+H +L E L ++ +
Sbjct: 480 IDDTLVKSLKKEDHVKHLGECFEILNQYQM 509
>gi|2343271 (AF014793) pol polyprotein [walleye epidermal hyperplasia virus
type 2]
Length = 1246
Score = 33.2 bits (74), Expect = 0.084
Identities = 17/52 (32%), Positives = 32/52 (60%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
++F+++DL + FF V ++ + + AF + R +T +PQGF ++P FS
Sbjct: 259 KWFTVIDLSNAFFSVPVHPDSQYLFAFTFE-GRQYTWTVLPQGFIHSPTLFS 309
Score = 21.9 bits (45), Expect = 0.084
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 276 YIDDILVYSKTKEEHDTNLK 335
Y+DD+L+ S TK D N+K
Sbjct: 330 YMDDVLIASTTK---DINIK 346
>gi|535518 (U13766) gag-pol polyprotein [Murine leukemia virus]
Length = 1736
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 775 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 834
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 835 MGISGQLTWTRLPQGFKNSPTLF 857
>gi|2801471 (AF033811) Pr180 [Moloney murine leukemia virus]
Length = 1737
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 775 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 834
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 835 MGISGQLTWTRLPQGFKNSPTLF 857
>gi|1346748|sp|P03355|POL_MLVMO POL POLYPROTEIN [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ;
RIBONUCLEASE H ]
Length = 1199
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 237 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 296
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 297 MGISGQLTWTRLPQGFKNSPTLF 319
>gi|74601|pir||GNMV1M pol polyprotein - Moloney murine leukemia virus
Length = 1199
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 237 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 296
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 297 MGISGQLTWTRLPQGFKNSPTLF 319
>gi|2281588 (AF010170) Pol [synthetic construct]
Length = 1199
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 237 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 296
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 297 MGISGQLTWTRLPQGFKNSPTLF 319
>gi|808733 (M32803) reverse transcriptase [Moloney murine leukemia virus]
Length = 560
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 466 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 525
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 526 MGISGQLTWTRLPQGFKNSPTLF 548
>gi|419483|pir||A46311 pol polyprotein - Moloney murine leukemia virus (strain 3-1R)
(fragment)
Length = 559
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 465 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 524
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 525 MGISGQLTWTRLPQGFKNSPTLF 547
>gi|1311296|pdb|1MML| Mol_id: 1; Molecule: Mmlv Reverse Transcriptase; Chain: Null;
Engineered: Yes
Length = 265
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 108 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 167
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 168 MGISGQLTWTRLPQGFKNSPTLF 190
>gi|223354|prf||0711245A protein gag/pol/env [Moloney murine leukemia virus]
Length = 2514
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 886 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 945
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 946 MGISGQLTWTRLPQGFKNSPTLF 968
>gi|4071076 (AF019230) pol polypeptide [Murine leukemia virus]
Length = 1204
Score = 36.4 bits (82), Expect = 0.085
Identities = 22/63 (34%), Positives = 42/63 (65%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H ++++++LDL+D FF + L+ +P AF
Sbjct: 242 EVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE 301
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 302 MGISGQLTWTRLPQGFKNSPTLF 324
>gi|2842430|emb|CAA70075| (Y08851) pol [Feline foamy virus] >gi|3123539|emb|CAA11581|
(AJ223851) pol gene [Feline foamy virus]
Length = 1156
Score = 30.9 bits (68), Expect = 0.11
Identities = 21/59 (35%), Positives = 31/59 (51%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
L SL Y + +DL +GF+ + ED TAF + +T +PQGF N+P F+
Sbjct: 236 LGSLFKGRYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYC-WTVLPQGFLNSPGLFT 293
Score = 23.9 bits (50), Expect = 0.11
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKK 359
Y+DD+ + +++EH L ++ RLK+
Sbjct: 309 YVDDVYISHDSEKEHLEYLDILFNRLKE 336
>gi|727181 (L40990) pol [Simian immunodeficiency virus]
Length = 1049
Score = 36.0 bits (81), Expect = 0.11
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 56 LHGYEYFSLLDLEDGFFQVGLNHEDRPKTAF-IDDKNRL-----MQFTCMPQGFKNNPDN 217
L + ++LD+ D ++ + L+ E R TAF I N QF C+PQG+K +P
Sbjct: 288 LQKMKQITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGVRYQFNCLPQGWKGSPTI 347
Query: 218 FSS 226
F +
Sbjct: 348 FQN 350
>gi|3377855 (AF076274) contains similarity to reverse trancriptase (Pfam:
rvt.hmm, score: 96.80) and CCHC-type zinc fingers (Pfam:
zf-CCHC.hmm, score: 14.43) [Arabidopsis thaliana]
Length = 315
Score = 36.0 bits (81), Expect = 0.11
Identities = 24/79 (30%), Positives = 38/79 (47%)
Query: 132 DQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSKTK 311
D+ + + TK G L + F R ++ VL IG Y DDIL+Y+K+
Sbjct: 205 DEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFIGKFVVVYFDDILIYNKSY 264
Query: 312 EEHDTNLKLVEERLKKFNL 368
+H L+L+ + L+K L
Sbjct: 265 SDHIQPLELILKTLRKEGL 283
>gi|4154397 (AF114285) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 36.0 bits (81), Expect = 0.11
Identities = 19/53 (35%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ E R TAF + + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDKEFRKYTAFTIPSINNETPGKRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|130635|sp|P11368|POL_IPMA PUTATIVE POL POLYPROTEIN [CONTAINS: ENDONUCLEASE; REVERSE
TRANSCRIPTASE ] >gi|74620|pir||GNMSIA retrovirus-related
pol polyprotein - mouse intracisternal A-particle MIA14
Length = 867
Score = 36.0 bits (81), Expect = 0.11
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 80 LLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++D++D FF + L DRP+ AF D+ + Q+ +PQG N+P
Sbjct: 115 IIDIKDCFFSIPLCPRDRPRFAFTIPSINSDEPDNRYQWKVLPQGMSNSP 164
>gi|1711029 (U78765) FeSFV polymerase [feline syncytial virus] >gi|1805314
(U85043) reverse transcriptase [feline syncytial virus]
Length = 1156
Score = 30.5 bits (67), Expect = 0.14
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 53 SLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
SL +Y + +DL +GF+ + ED TAF + +T +PQGF N+P F+
Sbjct: 238 SLFKGKYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYC-WTVLPQGFLNSPGLFT 293
Score = 23.9 bits (50), Expect = 0.14
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKK 359
Y+DD+ + +++EH L ++ RLK+
Sbjct: 309 YVDDVYISHDSEKEHLEYLDILFNRLKE 336
>gi|400821|sp|P31792|POL_FENV1 POL POLYPROTEIN [CONTAINS: REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
>gi|74607|pir||GNMVCE pol polyprotein - feline
endogenous virus ECE1 (fragment)
>gi|4490388|emb|CAB38566.1| (X51929) polyprotein [Felis
silvestris]
Length = 1046
Score = 32.1 bits (71), Expect = 0.14
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI--DDKNRL---MQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L + + AF D + + + +T +PQGFKN+P F
Sbjct: 120 WYTVLDLKDAFFCLPLAPQSQELFAFEWRDPERGISGQLTWTRLPQGFKNSPTLF 174
Score = 22.3 bits (46), Expect = 0.14
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 213 TIFHRGLHIVLCDLIGNG----CFSYIDDILVYSKTKE 314
T+F LH L D Y+DD+L+ + TKE
Sbjct: 172 TLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKE 209
>gi|130659|sp|P27980|POL_SIVAG POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|334404 (M30931) pol
polyprotein [Simian immunodeficiency virus]
Length = 1046
Score = 35.6 bits (80), Expect = 0.15
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSS 226
++LD+ D ++ + L+ E R TAF QF C+PQG+K +P F +
Sbjct: 303 TVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGTRYQFNCLPQGWKGSPTIFQN 358
>gi|2739172 (AF033259) polyprotein [porcine endogenous type C retrovirus]
Length = 270
Score = 35.6 bits (80), Expect = 0.15
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L+ +P AF + + +T +PQGFKN+P F
Sbjct: 192 WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIF 246
>gi|2155267 (U90557) pol protein [Simian T-cell lymphotropic virus type 2]
Length = 993
Score = 35.6 bits (80), Expect = 0.15
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNF 220
Y +DL D FFQ+ L + +P AF + +T +PQGFKN+P F
Sbjct: 205 YVQTIDLADAFFQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSPTLF 260
>gi|3133302 (AF038600) pol protein [Sus scrofa]
Length = 1145
Score = 35.6 bits (80), Expect = 0.15
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L+ +P AF + + +T +PQGFKN+P F
Sbjct: 214 WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIF 268
>gi|2133292|pir||S60179 pol polyprotein homolog - fungus (Fusarium oxysporum)
retrotransposon skippy >gi|510697 (L34658) pol
polyprotein [Fusarium oxysporum]
Length = 1295
Score = 35.6 bits (80), Expect = 0.15
Identities = 23/83 (27%), Positives = 40/83 (47%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I + D+ + + TK G L +F R + VL + + Y+DDIL++
Sbjct: 422 IKEADEWKTAFRTKYGLFEYLVMPFGLTNAPAVFQRMITNVLREYLDIFVVCYLDDILIF 481
Query: 300 SKTKEEHDTNLKLVEERLKKFNL 368
S T+EEH ++ V + L+ N+
Sbjct: 482 SDTEEEHTEHVHKVLKALQDANM 504
Score = 32.5 bits (72), Expect = 1.3
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 56 LHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNF 220
L G ++F+ LDL+ + + + D KTAF K L ++ MP G N P F
Sbjct: 402 LFGKKWFTALDLKSAYNLIRIKEADEWKTAF-RTKYGLFEYLVMPFGLTNAPAVF 455
>gi|3702864 (AF077681) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 35.6 bits (80), Expect = 0.15
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDXEXRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702874 (AF077686) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 35.6 bits (80), Expect = 0.15
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFIDDKNR------LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDXEXRKYTAFTTPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3005987|emb|CAA76582| (Y17013) pol [porcine endogenous retrovirus]
Length = 868
Score = 35.6 bits (80), Expect = 0.15
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L+ +P AF + + +T +PQGFKN+P F
Sbjct: 168 WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIF 222
>gi|4107489 (AF005496) gag-pol fusion polyprotein [Human immunodeficiency virus
type 1]
Length = 1435
Score = 35.6 bits (80), Expect = 0.15
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
S+LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 694 SVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 752
>gi|1470291 (U64193) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 250
Score = 35.6 bits (80), Expect = 0.15
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 103 TVLDVGDAYFSVPLDKEFRKYTAFTIPIINNETPGIRYQYNVLPQGWKGSPARFQSSMT 161
>gi|323805 (M87592) reverse transcriptase [Equine infectious anemia virus]
Length = 316
Score = 35.6 bits (80), Expect = 0.15
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 29 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSP 82
>gi|323838 (M16575) pol polyprotein [Equine infectious anemia virus]
Length = 1138
Score = 35.6 bits (80), Expect = 0.15
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 281 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSP 334
>gi|2133676|pir||S70430 hypothetical protein 4 - fruit fly (Drosophila melanogaster)
retrotransposon mgd1
Length = 1186
Score = 35.6 bits (80), Expect = 0.15
Identities = 22/63 (34%), Positives = 32/63 (49%)
Query: 32 QISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
+I L L +YFS LDL GF Q+ L+ R T+F ++T +P G K P
Sbjct: 340 RIEDILDQLGRAKYFSCLDLMSGFHQIELDERSRNITSF-STSTGAYRYTRLPFGLKIAP 398
Query: 212 DNF 220
++F
Sbjct: 399 NSF 401
>gi|290629 (M87581) reverse transcriptase [Equine infectious anemia virus]
Length = 987
Score = 35.6 bits (80), Expect = 0.15
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 130 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSP 183
>gi|130595|sp|P11204|POL_EIAV9 POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|74639|pir||GNLJEW
pol polyprotein (clone 1369) - equine infectious anemia
virus
Length = 1146
Score = 35.6 bits (80), Expect = 0.15
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 289 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSP 342
>gi|417517|sp|P32542|POL_EIAVC POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|320014|pir||GNLJ22
pol polyprotein - equine infectious anemia virus (strain
CL22)
Length = 1146
Score = 35.6 bits (80), Expect = 0.15
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 289 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSP 342
>gi|2739174 (AF033260) reverse transcriptase [porcine endogenous type C
retrovirus]
Length = 174
Score = 35.6 bits (80), Expect = 0.15
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L+ +P AF + + +T +PQGFKN+P F
Sbjct: 109 WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIF 163
>gi|4512237|dbj|BAA75235| (AB014746) polyprotein [Hordeum vulgare]
Length = 265
Score = 35.6 bits (80), Expect = 0.15
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+IDDILVYS+++E+H +L+LV +L++ L
Sbjct: 8 FIDDILVYSQSEEDHQHHLRLVLGKLREHQL 38
>gi|4512247|dbj|BAA75238| (AB014753) polyprotein [Morus bombycis]
Length = 265
Score = 35.6 bits (80), Expect = 0.15
Identities = 14/31 (45%), Positives = 25/31 (80%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+IDDIL+YS+++E+H +L+LV +L++ L
Sbjct: 8 FIDDILIYSQSEEDHQQHLRLVLGKLREHQL 38
>gi|1871368 (U77599) polyprotein [Sus scrofa]
Length = 309
Score = 35.6 bits (80), Expect = 0.15
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L+ +P AF + + +T +PQGFKN+P F
Sbjct: 233 WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIF 287
>gi|1871370 (U77600) polyprotein [Sus scrofa domestica]
Length = 309
Score = 35.6 bits (80), Expect = 0.15
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L+ +P AF + + +T +PQGFKN+P F
Sbjct: 233 WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIF 287
>gi|130596|sp|P03371|POL_EIAVY POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|74638|pir||GNLJEV
pol polyprotein - equine infectious anemia virus
Length = 1145
Score = 35.2 bits (79), Expect = 0.19
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 289 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWKCLPQGFVLSP 342
>gi|130585|sp|P10272|POL_BAEVM POL POLYPROTEIN [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ;
ENDONUCLEASE] >gi|74606|pir||GNMVM7 pol polyprotein -
baboon endogenous virus (strain M7)
Length = 1189
Score = 35.2 bits (79), Expect = 0.19
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 65 YEYFSLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR----LMQFTCMPQGFKNNPDNF 220
Y ++++LDL+D FF + L + + AF D R + +T +PQGFKN+P F
Sbjct: 261 YSWYTVLDLKDAFFCLPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLF 317
>gi|2338318 (AF009384) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 35.2 bits (79), Expect = 0.19
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V LN R TAF I N Q+ +PQG+K +P F S T
Sbjct: 202 TVLDVGDAYFSVPLNENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|2460338 (AF021273) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 35.2 bits (79), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 140
>gi|2460370 (AF021289) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 35.2 bits (79), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3033416 (U60065) pol polyprotein [Gibbon leukemia virus]
Length = 1127
Score = 35.2 bits (79), Expect = 0.19
Identities = 25/63 (39%), Positives = 41/63 (64%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFI---DD 157
+I+KR++ +H + ++S+LDL+D FF + L+ + AF +
Sbjct: 196 EINKRVQDIHPTVPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKLHPNSQSLFAFEWKDPE 255
Query: 158 KNRLMQFTC--MPQGFKNNPDNF 220
K Q T +PQGFKN+P F
Sbjct: 256 KGNTGQLTWTRLPQGFKNSPTLF 278
>gi|509838 (M16550) pol polyprotein [Baboon endogenous virus]
Length = 1197
Score = 35.2 bits (79), Expect = 0.19
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 65 YEYFSLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR----LMQFTCMPQGFKNNPDNF 220
Y ++++LDL+D FF + L + + AF D R + +T +PQGFKN+P F
Sbjct: 269 YSWYTVLDLKDAFFCLPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLF 325
>gi|3702872 (AF077685) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 35.2 bits (79), Expect = 0.19
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702936 (AF077717) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 35.2 bits (79), Expect = 0.19
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGSTH 238
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGXPAIFQSSMTK 271
Query: 239 CS 244
S
Sbjct: 272 IS 273
>gi|1498648 (U63133) Gag-Pol polyprotein [Mus musculus]
Length = 1734
Score = 35.2 bits (79), Expect = 0.19
Identities = 22/63 (34%), Positives = 41/63 (64%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H + ++++LDL+D FF + L+ +P AF
Sbjct: 775 EVNKRVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWGDPG 834
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 835 MGISGQLTWTRLPQGFKNSPTLF 857
>gi|3859006|emb|CAA05984| (AJ003204) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 35.2 bits (79), Expect = 0.19
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377652|emb|CAB16604| (Z99300) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 35.2 bits (79), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF D Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNDTPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377665|emb|CAB16617| (Z99314) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 35.2 bits (79), Expect = 0.19
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDKESRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|3859002|emb|CAA05982| (AJ003202) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 35.2 bits (79), Expect = 0.19
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|3248895 (AF028231) polymerase polyprotein [Equine infectious anemia virus]
>gi|3248902 (AF028232) polymerase polyprotein [Equine
infectious anemia virus]
Length = 1146
Score = 35.2 bits (79), Expect = 0.19
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 289 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWKCLPQGFVLSP 342
>gi|4154371 (AF114272) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 35.2 bits (79), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2801512 (AF033820) pol polyprotein [Equine infectious anemia virus]
>gi|2905988 (AF016316) pol [Equine infectious anemia
virus]
Length = 1138
Score = 35.2 bits (79), Expect = 0.19
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++ ++LD+ D +F + L+ E RP TAF + ++ + C+PQGF +P
Sbjct: 281 KHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWKCLPQGFVLSP 334
>gi|2745748 (AF004885) gag-pol polyprotein [Human immunodeficiency virus type
1]
Length = 1433
Score = 35.2 bits (79), Expect = 0.19
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 692 TVLDVGDAYFSVPLHEEFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAIFQSSMT 750
>gi|3930592 (AF090469) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 216
Score = 35.2 bits (79), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 78 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 136
>gi|4512244|dbj|BAA75237| (AB014751) polyprotein [Ipomoea nil]
Length = 265
Score = 35.2 bits (79), Expect = 0.19
Identities = 14/31 (45%), Positives = 25/31 (80%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+IDDIL+YS+++E+H +L+LV +L++ L
Sbjct: 8 FIDDILIYSQSEEDHQHHLRLVLGKLREHQL 38
>gi|4205637 (AF033133) pol protein [Human immunodeficiency virus type 1]
>gi|4205639 (AF033134) pol protein [Human
immunodeficiency virus type 1] >gi|4205641 (AF033135)
pol protein [Human immunodeficiency virus type 1]
>gi|4205643 (AF033136) pol protein [Human
immunodeficiency virus type 1] >gi|4205645 (AF033137)
pol protein [Human immunodeficiency virus type 1]
>gi|4205649 (AF033139) pol protein [Human
immunodeficiency virus type 1] >gi|4205653 (AF033141)
pol protein [Human immunodeficiency virus type 1]
>gi|4205655 (AF033142) pol protein [Human
immunodeficiency virus type 1] >gi|4205661 (AF033145)
pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 35.2 bits (79), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 68
>gi|4205657 (AF033143) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 35.2 bits (79), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 68
>gi|2343269 (AF014792) pol polyprotein [walleye epidermal hyperplasia virus
type 1]
Length = 1200
Score = 32.5 bits (72), Expect = 0.23
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 74 FSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPDNFS 223
F+++DL + FF V ++ + + AF + R +T +PQGF ++P FS
Sbjct: 261 FTVIDLSNAFFSVPIHPDSQYLFAFTFE-GRQYTWTVLPQGFIHSPTLFS 309
Score = 21.2 bits (43), Expect = 0.23
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 276 YIDDILVYSKTKEEHDTNLK 335
Y+DD+L+ SK +E TN K
Sbjct: 330 YMDDVLIASKDEE---TNYK 346
>gi|130618|sp|P05959|POL_HV1RH POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|328569 (M17451) pol
polyprotein [Human immunodeficiency virus type 1]
Length = 1002
Score = 34.8 bits (78), Expect = 0.25
Identities = 21/53 (39%), Positives = 33/53 (61%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLM-QFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF ++ R+ Q+ +PQG+K +P F S T
Sbjct: 261 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPRIRYQYNVLPQGWKGSPAIFQSSMT 319
>gi|3930590 (AF090468) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 209
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L E R TAF + Q+ +PQG+K +P F S T
Sbjct: 71 TVLDVGDAYFSVPLXEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 129
>gi|4377778|gb|AAD19242| (AF056652) reverse transcriptase [Human immunodeficiency virus type
1] >gi|4377780|gb|AAD19243| (AF056653) reverse
transcriptase [Human immunodeficiency virus type 1]
>gi|4377784|gb|AAD19245| (AF056655) reverse
transcriptase [Human immunodeficiency virus type 1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377782|gb|AAD19244| (AF056654) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377786|gb|AAD19246| (AF056656) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377794|gb|AAD19250| (AF056660) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377792|gb|AAD19249| (AF056659) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377788|gb|AAD19247| (AF056657) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377806|gb|AAD19256| (AF056666) reverse transcriptase [Human immunodeficiency virus type
1] >gi|4377808|gb|AAD19257| (AF056667) reverse
transcriptase [Human immunodeficiency virus type 1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377790|gb|AAD19248| (AF056658) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377834|gb|AAD19270| (AF056680) reverse transcriptase [Human immunodeficiency virus type
1] >gi|4377836|gb|AAD19271| (AF056681) reverse
transcriptase [Human immunodeficiency virus type 1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377838|gb|AAD19272| (AF056682) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|3930596 (AF090471) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 215
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 77 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETXGIRYQYNVLPQGWKGSPXIFQSSMT 135
>gi|3702860 (AF077679) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFIDDKNR------LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDXEIRKYTAFTTPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702862 (AF077680) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFIDDKNR------LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDXEFRKYTAFTTPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702870 (AF077684) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFIDDKNR------LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDXEIRKYTAFTTPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702920 (AF077709) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702924 (AF077711) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702938 (AF077718) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDXEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702940 (AF077719) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702942 (AF077720) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4071331 (AF079464) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377940|gb|AAD19300| (AF072939) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377942|gb|AAD19302| (AF072941) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDTEXRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702866 (AF077682) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDXEIRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377963|gb|AAD19323| (AF072963) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377964|gb|AAD19324| (AF072964) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377965|gb|AAD19325| (AF072965) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|321529|pir||S32047 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938224|emb|CAA49982|
(X70628) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321530|pir||S32048 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|321532|pir||S32050
RNA-directed DNA polymerase (EC 2.7.7.49) - human
immunodeficiency virus type 1 (fragment)
>gi|321572|pir||S32091 RNA-directed DNA polymerase (EC
2.7.7.49) - human immunodeficiency virus type 1
(fragment) >gi|938220|emb|CAA49977| (X70623) reverse
transcriptase [Human immunodeficiency virus type 1]
>gi|938225|emb|CAA49983| (X70629) reverse transcriptase
[Human immunodeficiency virus type 1]
>gi|939878|emb|CAA49986| (X70632) reverse transcriptase
[Human immunodeficiency virus type 1]
Length = 219
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321531|pir||S32049 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|321571|pir||S32090
RNA-directed DNA polymerase (EC 2.7.7.49) - human
immunodeficiency virus type 1 (fragment)
>gi|938226|emb|CAA49984| (X70630) reverse transcriptase
[Human immunodeficiency virus type 1]
>gi|939880|emb|CAA49988| (X70634) reverse transcriptase
[Human immunodeficiency virus type 1]
Length = 219
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321570|pir||S32089 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938219|emb|CAA49976|
(X70622) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321573|pir||S32092 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938221|emb|CAA49978|
(X70624) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321574|pir||S32093 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938222|emb|CAA49979|
(X70625) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321579|pir||S32098 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|939877|emb|CAA49985|
(X70631) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|3549963|emb|CAA12664| (AJ225927) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 229
Score = 34.8 bits (78), Expect = 0.25
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V LN + + TAF + Q+ +PQG+K +P F S T
Sbjct: 94 TVLDVGDAYFSVPLNKDFKKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 152
>gi|2970245 (AF040579) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|4377668|emb|CAB16620| (Z99317) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377667|emb|CAB16619| (Z99316) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|130656|sp|P27973|POL_SIVA1 POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|334393 (M29975) pol
polyprotein [Simian immunodeficiency virus]
Length = 1047
Score = 34.8 bits (78), Expect = 0.25
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSS 226
+++D+ D ++ + L+ E R TAF + QF C+PQG+K +P F +
Sbjct: 298 TIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIRYQFNCLPQGWKGSPTIFQN 353
>gi|331995 (J01998) gag-pol polyprotein (tag amber codon at 2250-2252 inserts
Gln in Mo-MuLV) [AKV murine leukemia virus]
Length = 1734
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/63 (34%), Positives = 41/63 (64%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H + ++++LDL+D FF + L+ +P AF
Sbjct: 775 EVNKRVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPG 834
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 835 MGISGQLTWTRLPQGFKNSPTLF 857
>gi|4154424 (AF114299) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|101042|pir||A36373 hypothetical protein Tf1 - fission yeast (Schizosaccharomyces
pombe) >gi|173477 (M38526) Tf1 protein
[Schizosaccharomyces pombe]
Length = 1330
Score = 34.8 bits (78), Expect = 0.25
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++SK++ EH ++K V ++LK NL
Sbjct: 561 YMDDILIHSKSESEHVKHVKDVLQKLKNANL 591
>gi|130639|sp|P03356|POL_MLVAV POL POLYPROTEIN [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ;
RIBONUCLEASE H ] >gi|74602|pir||GNMVGV pol polyprotein -
AKV murine leukemia virus
Length = 1196
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/63 (34%), Positives = 41/63 (64%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H + ++++LDL+D FF + L+ +P AF
Sbjct: 237 EVNKRVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPG 296
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 297 MGISGQLTWTRLPQGFKNSPTLF 319
>gi|927201 (M87550) reverse transcriptase [Murine leukemia virus]
Length = 1038
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/63 (34%), Positives = 41/63 (64%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNR 166
+++KR+ +H + ++++LDL+D FF + L+ +P AF
Sbjct: 79 EVNKRVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPG 138
Query: 167 L-----MQFTCMPQGFKNNPDNF 220
+ + +T +PQGFKN+P F
Sbjct: 139 MGISGQLTWTRLPQGFKNSPTLF 161
>gi|4512242|dbj|BAA75236| (AB014750) polyprotein [Nicotiana tabacum]
Length = 265
Score = 34.8 bits (78), Expect = 0.25
Identities = 14/31 (45%), Positives = 25/31 (80%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+ID+IL+YS++KE+H +L+LV +L++ L
Sbjct: 8 FIDNILIYSQSKEDHQHHLRLVLGKLREHQL 38
>gi|4235404 (AF096885) pol polyprotein [Human immunodeficiency virus type 1]
Length = 370
Score = 34.8 bits (78), Expect = 0.25
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 171 TVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 229
>gi|538067 (M77661) putative pol polyprotein [Magnaporthe grisea]
Length = 1398
Score = 34.8 bits (78), Expect = 0.25
Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 1/78 (1%)
Query: 120 ITKTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVY 299
I + D+ + T+ G C L F R ++ VL D +G+ +Y+DDIL+Y
Sbjct: 460 IAEGDEHLTAFRTRFGLFEWLVCPFGLAGAPATFQRYVNGVLGDTLGDYASAYLDDILIY 519
Query: 300 SK-TKEEHDTNLKLVEERL 353
S +K +H + + V ++L
Sbjct: 520 SSGSKSDHWSKVTRVLDKL 538
>gi|478289|pir||JN0791 Tf2 protein, Retrotransposon - fission yeast (Schizosaccharomyces
pombe) >gi|173439 (L10324) protease, reverse
transcriptase, RNAse H, integrase protein
[Schizosaccharomyces pombe] >gi|2388948|emb|CAB11682.1|
(Z98978) SPAC27E2.08 retrotransposable element tf2 155
kd, le n:1333aa, identical to RDPO_SCHPO, Q05654,
(1333aa) [Schizosaccharomyces pombe]
Length = 1333
Score = 34.8 bits (78), Expect = 0.25
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++SK++ EH ++K V ++LK NL
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANL 594
>gi|1710054|sp|Q05654|RDPO_SCHPO RETROTRANSPOSABLE ELEMENT TF2 155 KD PROTEIN
>gi|1177360|emb|CAA93236| (Z69240) SPAC26A3.13c, len:
1333, PIR:JN0791 retrotransposon Tf2 protein, contains
PS00141 Eukaryotic and viral aspartyl proteases active
site [Schizosaccharomyces pombe]
Length = 1333
Score = 34.8 bits (78), Expect = 0.25
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++SK++ EH ++K V ++LK NL
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANL 594
>gi|2842524|emb|CAA16837| (AL021746) retrotransposable element [Schizosaccharomyces pombe]
Length = 1333
Score = 34.8 bits (78), Expect = 0.25
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 276 YIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
Y+DDIL++SK++ EH ++K V ++LK NL
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANL 594
>gi|4205693 (AF033161) pol protein [Human immunodeficiency virus type 1]
>gi|4205697 (AF033163) pol protein [Human
immunodeficiency virus type 1]
Length = 92
Score = 34.8 bits (78), Expect = 0.25
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205721 (AF033175) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.8 bits (78), Expect = 0.25
Identities = 19/53 (35%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S +T
Sbjct: 10 TVLDVGDAYFSVSLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSTT 68
>gi|1924990 (U83605) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 140
>gi|2460350 (AF021279) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFXIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2460358 (AF021283) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2460412 (AF021310) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930672 (AF090509) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930674 (AF090510) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2460426 (AF021317) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|4239649 (AF069672) pol protein [Human immunodeficiency virus type 1]
Length = 998
Score = 34.4 bits (77), Expect = 0.33
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNRLM-----QFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 257 TVLDVGDAYFSVPLHEDFRKYTAFTIPSTNNATPGIRYQYNVLPQGWKGSPAIFQSSMT 315
>gi|3163931|emb|CAA06947| (AJ006287) pol polyprotein precursor [Human immunodeficiency virus
type 1]
Length = 1006
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 265 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 323
>gi|4205617 (AF033123) pol protein [Human immunodeficiency virus type 1]
>gi|4205625 (AF033127) pol protein [Human
immunodeficiency virus type 1] >gi|4205629 (AF033129)
pol protein [Human immunodeficiency virus type 1]
>gi|4205633 (AF033131) pol protein [Human
immunodeficiency virus type 1] >gi|4205635 (AF033132)
pol protein [Human immunodeficiency virus type 1]
>gi|4205671 (AF033150) pol protein [Human
immunodeficiency virus type 1] >gi|4205673 (AF033151)
pol protein [Human immunodeficiency virus type 1]
>gi|4205677 (AF033153) pol protein [Human
immunodeficiency virus type 1] >gi|4205679 (AF033154)
pol protein [Human immunodeficiency virus type 1]
>gi|4205683 (AF033156) pol protein [Human
immunodeficiency virus type 1] >gi|4205687 (AF033158)
pol protein [Human immunodeficiency virus type 1]
>gi|4205689 (AF033159) pol protein [Human
immunodeficiency virus type 1] >gi|4205691 (AF033160)
pol protein [Human immunodeficiency virus type 1]
>gi|4205731 (AF033180) pol protein [Human
immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205619 (AF033124) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205621 (AF033125) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205631 (AF033130) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205681 (AF033155) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205647 (AF033138) pol protein [Human immunodeficiency virus type 1]
>gi|4205651 (AF033140) pol protein [Human
immunodeficiency virus type 1] >gi|4205659 (AF033144)
pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205685 (AF033157) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSITNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205623 (AF033126) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.4 bits (77), Expect = 0.33
Identities = 22/53 (41%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKEFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSLT 68
>gi|4377744|gb|AAD19225| (AF056635) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377746|gb|AAD19226| (AF056636) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377748|gb|AAD19227| (AF056637) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377824|gb|AAD19265| (AF056675) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377800|gb|AAD19253| (AF056663) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 104 TVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 162
>gi|4377812|gb|AAD19259| (AF056669) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377814|gb|AAD19260| (AF056670) reverse transcriptase [Human immunodeficiency virus type
1] >gi|4377816|gb|AAD19261| (AF056671) reverse
transcriptase [Human immunodeficiency virus type 1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377810|gb|AAD19258| (AF056668) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377820|gb|AAD19263| (AF056673) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377822|gb|AAD19264| (AF056674) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377760|gb|AAD19233| (AF056643) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377758|gb|AAD19232| (AF056642) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377796|gb|AAD19251| (AF056661) reverse transcriptase [Human immunodeficiency virus type
1] >gi|4377798|gb|AAD19252| (AF056662) reverse
transcriptase [Human immunodeficiency virus type 1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377826|gb|AAD19266| (AF056676) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377828|gb|AAD19267| (AF056677) reverse transcriptase [Human immunodeficiency virus type
1] >gi|4377830|gb|AAD19268| (AF056678) reverse
transcriptase [Human immunodeficiency virus type 1]
>gi|4377832|gb|AAD19269| (AF056679) reverse
transcriptase [Human immunodeficiency virus type 1]
Length = 218
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|548570|sp|P35963|POL_HV1Y2 POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|279920|pir||B44001
pol polyprotein - human immunodeficiency virus type 1
(strain YU-2)
Length = 1003
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLHEDFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|1841424|emb|CAA71194| (Y10107) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 211
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 43 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 101
>gi|2769609|emb|CAA76091| (Y16145) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 199
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 75 TVLDVGDAYFSVPLDKEFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 133
>gi|4071335 (AF079466) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4324862|gb|AAD17126| (AF110974) gag-pol polyprotein [Human immunodeficiency virus type
1]
Length = 1427
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 686 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 744
>gi|4324871|gb|AAD17135| (AF110975) gag-pol polyprotein [Human immunodeficiency virus type
1]
Length = 1427
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 686 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 744
>gi|4377678|emb|CAB16630| (Z99329) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377941|gb|AAD19301| (AF072940) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4545155|gb|AAD22418| (AF107375) pol protein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|4545157|gb|AAD22419| (AF107376) pol protein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|4545159|gb|AAD22420| (AF107377) pol protein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|3859028|emb|CAA09176| (AJ010422) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 250
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377945|gb|AAD19305| (AF072944) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|321589|pir||S32131 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|287969|emb|CAA50413|
(X71096) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1]
Length = 219
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGXRYQYNVLPQGWKGSPXIFQSSMT 165
>gi|2258475 (AF011755) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 560
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TILDVGDAYFSIPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2460332 (AF021270) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 219
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3702876 (AF077687) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSMNNETPGSRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702878 (AF077688) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSMNNETPGSRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702922 (AF077710) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702928 (AF077713) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702930 (AF077714) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702932 (AF077715) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702934 (AF077716) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|1237256 (M18247) gag-pol precursor polyprotein gPr80 [Feline leukemia virus]
Length = 1784
Score = 34.4 bits (77), Expect = 0.33
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFI--DDK 160
+++KR+ +H + ++++LDL+D FF + L+ E + AF D +
Sbjct: 817 EVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPE 876
Query: 161 NRL---MQFTCMPQGFKNNPDNF 220
L + +T +PQGFKN+P F
Sbjct: 877 IGLSGQLTWTRLPQGFKNSPTLF 899
>gi|3702944 (AF077721) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3858993|emb|CAA09173| (AJ010419) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 250
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1470295 (U64196) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 246
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 99 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 157
>gi|3002831 (AF042100) gag-pol fusion polyprotein [Human immunodeficiency virus
type 1]
Length = 1435
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 694 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 752
>gi|469950|emb|CAA81337| (Z26586) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 212
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 40 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 98
>gi|2769601|emb|CAA76087| (Y16141) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 203
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 75 TVLDVGDAYFSVPLDKEFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 133
>gi|2769611|emb|CAA76092| (Y16146) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 203
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 75 TVLDVGDAYFSVPLDKEFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 133
>gi|3420023 (AF052723) gag-pol precursor polyprotein gPr80 [Feline leukemia
virus]
Length = 1786
Score = 34.4 bits (77), Expect = 0.33
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 20/63 (31%)
Query: 32 QISKRLRSLH---------------GYEYFSLLDLEDGFFQVGLNHEDRPKTAFI--DDK 160
+++KR+ +H + ++++LDL+D FF + L+ E + AF D +
Sbjct: 817 EVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPE 876
Query: 161 NRL---MQFTCMPQGFKNNPDNF 220
L + +T +PQGFKN+P F
Sbjct: 877 IGLSGQLTWTRLPQGFKNSPTLF 899
>gi|3549937|emb|CAA12651| (AJ225914) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 206
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 70 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGTRYQYNVLPQGWKGSPAIFQSSMT 128
>gi|3549939|emb|CAA12652| (AJ225915) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 206
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 70 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGTRYQYNVLPQGWKGSPAIFQSSMT 128
>gi|1800129 (U82096) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154363 (AF114268) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154389 (AF114281) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154391 (AF114282) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154409 (AF114291) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154411 (AF114292) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4324847|gb|AAD17111| (AF110972) gag-pol polyprotein [Human immunodeficiency virus type
1]
Length = 1429
Score = 34.4 bits (77), Expect = 0.33
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ R TAF I +N Q+ +PQG+K +P F S T
Sbjct: 688 TVLDVGDAYFSVPLDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 746
>gi|4324855|gb|AAD17119| (AF110973) gag-pol polyprotein [Human immunodeficiency virus type
1]
Length = 1428
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 686 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 744
>gi|555007 (M83276) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 217
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 45 TVLDVGDAYFSVPLDKEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 103
>gi|1470235 (U64163) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 234
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 98 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 156
>gi|1899136 (U86780) pol protein [Human immunodeficiency virus type 1]
Length = 999
Score = 34.4 bits (77), Expect = 0.33
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 258 TVLDVGDAYFSVPLHEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 316
>gi|2338472 (AF013426) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 217
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2338474 (AF013427) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 217
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2338478 (AF013429) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 217
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2338544 (AF013462) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 217
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2338546 (AF013463) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 217
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930594 (AF090470) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 216
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 78 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETXGIRYQYNVLPQGWKGSPAIFQSSMT 136
>gi|4377636|emb|CAA81339| (Z26588) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 216
Score = 34.4 bits (77), Expect = 0.33
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 45 TVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 103
>gi|3600064|gb|AAC63290| (AF080229) polymerase [Human endogenous retrovirus K]
Length = 597
Score = 31.7 bits (70), Expect = 0.40
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 80 LLDLEDGFFQVGLNHEDRPKTAF----IDDKNRLMQFT--CMPQGFKNNP 211
++DL+D FF + L +D K AF I++K +F +PQG NNP
Sbjct: 119 IIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNNP 168
Score = 21.2 bits (43), Expect = 0.40
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 276 YIDDILVYSKTKEE 317
YIDDIL ++TK++
Sbjct: 194 YIDDILCAAETKDK 207
>gi|2460352 (AF021280) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFXIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2460368 (AF021288) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 140
>gi|2460414 (AF021311) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNRLM-----QFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNATPGIRYQYNVLPQGWKGSPAIFQSSXT 140
>gi|2460416 (AF021312) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSIPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 140
>gi|3930686 (AF090516) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 140
>gi|3930688 (AF090517) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 140
>gi|3930698 (AF090522) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930700 (AF090523) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930702 (AF090524) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|4406792|gb|AAD20101| (AC006304) putative reverse transcriptase [Arabidopsis thaliana]
Length = 764
Score = 34.0 bits (76), Expect = 0.43
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 126 KTDQRQRSLMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSK 305
K DQ + S + G LK + + R ++ + +G YIDD+LV S
Sbjct: 600 KDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKST 659
Query: 306 TKEEHDTNLKLVEERLKKFNL 368
+H +LK E L K+N+
Sbjct: 660 RSADHIDHLKACFETLNKYNM 680
>gi|400826|sp|Q02836|POL_SIVAI POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ]
Length = 1057
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNRL-----MQFTCMPQGFKNNPDNFSS 226
+++D+ D ++ + L E R TAF I N QF C+PQG+K +P F +
Sbjct: 301 TVIDIGDAYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQGWKGSPTIFQN 356
>gi|334437 (M66437) pol gene product [Simian immunodeficiency virus]
Length = 1057
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNRL-----MQFTCMPQGFKNNPDNFSS 226
+++D+ D ++ + L E R TAF I N QF C+PQG+K +P F +
Sbjct: 301 TVIDIGDAYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQGWKGSPTIFQN 356
>gi|1470166 (U64125) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 241
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/56 (37%), Positives = 32/56 (56%), Gaps = 6/56 (10%)
Query: 68 EYFSLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSG 229
+Y ++LD+ D +F V L+ + TAF I N Q+ +PQG+K +P F S
Sbjct: 91 KYVTVLDVGDAYFSVPLDKDFXKYTAFPIPSXNNETPGIRYQYNVLPQGWKGSPAIFQSS 150
Query: 230 ST 235
T
Sbjct: 151 MT 152
>gi|2570314 (U88824) gag-Pol fusion [Human immunodeficiency virus type 1]
Length = 1437
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 696 TVLDVGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 754
>gi|4205695 (AF033162) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 34.0 bits (76), Expect = 0.43
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 83 LDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 12 LDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|2338301 (AF009374) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF I +N Q+ +PQG+K +P F T
Sbjct: 202 TVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQCSMT 260
>gi|2338304 (AF009376) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 202 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|2338344 (AF009400) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 202 TILDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|2338346 (AF009401) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 34.0 bits (76), Expect = 0.43
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L E R TAF I N Q+ +PQG+K +P F S T
Sbjct: 202 TVLDVGDAYFSVPLYEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|3858983|emb|CAA09168| (AJ010414) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 253
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKXTAFTIPSINNETPGIRYQYNVLPQGWKGSPXIFQSSMT 165
>gi|495770 (M12927) unknown protein [Drosophila melanogaster]
Length = 1010
Score = 34.0 bits (76), Expect = 0.43
Identities = 18/53 (33%), Positives = 31/53 (57%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
L +L ++F+ LDL+ G+ Q+ L DR KT+F + + +F +P G +N
Sbjct: 239 LANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGK-YEFCRLPFGLRN 290
>gi|3549971|emb|CAA12668| (AJ225931) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 94 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 152
>gi|3808242 (AF069669) pol protein [Human immunodeficiency virus type 1]
Length = 1003
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ R TAF I N Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPSIFQSSMT 320
>gi|2619060 (AF027709) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGTRXQYNVLPQGWKGSPAIFQSSMT 264
>gi|2970259 (AF040586) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 264
>gi|2970263 (AF040588) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 264
>gi|2970267 (AF040590) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 264
>gi|2970271 (AF040592) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 264
>gi|2970273 (AF040593) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 264
>gi|3702880 (AF077689) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGSRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702882 (AF077690) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGSRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702884 (AF077691) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGSRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377960|gb|AAD19320| (AF072960) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377970|gb|AAD19330| (AF072971) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|2970261 (AF040587) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 264
>gi|4545168|gb|AAD22424| (AF107382) pol protein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|4545170|gb|AAD22425| (AF107383) pol protein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|4545172|gb|AAD22426| (AF107384) pol protein [Human immunodeficiency virus type 1]
Length = 341
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|321549|pir||S32068 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|321550|pir||S32069
RNA-directed DNA polymerase (EC 2.7.7.49) - human
immunodeficiency virus type 1 (fragment)
>gi|938198|emb|CAA49958| (X70604) reverse transcriptase
[Human immunodeficiency virus type 1]
>gi|938199|emb|CAA49959| (X70605) reverse transcriptase
[Human immunodeficiency virus type 1]
Length = 219
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321585|pir||S32126 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|287957|emb|CAA50431|
(X71114) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1]
Length = 219
Score = 34.0 bits (76), Expect = 0.43
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDTEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321587|pir||S32128 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|287965|emb|CAA50411|
(X71094) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1]
Length = 219
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 165
>gi|321588|pir||S32129 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|287967|emb|CAA50412|
(X71095) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1]
Length = 219
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 165
>gi|321590|pir||S32132 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment)
Length = 219
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 165
>gi|321600|pir||S32152 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|287963|emb|CAA50410|
(X71093) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1] >gi|288094|emb|CAA50414|
(X71097) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1] >gi|288096|emb|CAA50415|
(X71098) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1]
Length = 219
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 165
>gi|885633 (U16779) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 560
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1322401|emb|CAA61544| (X89270) pol protein [Human T-cell lymphotropic virus type 2]
Length = 917
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNF 220
+ +DL D FFQ+ L + +P AF + +T +PQGFKN+P F
Sbjct: 129 HLQTIDLTDAFFQIPLPKQFQPYFAFTIPQPCDYGPGTRYAWTVLPQGFKNSPTLF 184
>gi|2258473 (AF011754) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 560
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2801517 (AF033821) Prgag-pol [Drosophila melanogaster]
Length = 1463
Score = 34.0 bits (76), Expect = 0.43
Identities = 18/53 (33%), Positives = 31/53 (57%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
L +L ++F+ LDL+ G+ Q+ L DR KT+F + + +F +P G +N
Sbjct: 692 LANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGK-YEFCRLPFGLRN 743
>gi|3549965|emb|CAA12665| (AJ225928) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 229
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 94 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 152
>gi|3549969|emb|CAA12667| (AJ225930) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 229
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 94 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 152
>gi|404039 (L20734) pol polyprotein [Human T-cell lymphotropic virus type 2]
Length = 982
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNF 220
+ +DL D FFQ+ L + +P AF + +T +PQGFKN+P F
Sbjct: 194 HLQTIDLTDAFFQIPLPKQFQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLF 249
>gi|1470132 (U64107) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 246
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 99 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 157
>gi|3808262 (AF069671) pol protein [Human immunodeficiency virus type 1]
Length = 1001
Score = 34.0 bits (76), Expect = 0.43
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNRLM-----QFTCMPQGFKNNPDNFSSGST 235
++LDL D +F V L+ R TAF I N Q+ +PQG+K +P F S T
Sbjct: 260 TVLDLGDAYFSVPLHEGFRKYTAFTIPSTNNATPGIRYQYNVLPQGWKGSPAIFQSSMT 318
>gi|4377666|emb|CAB16618| (Z99315) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377679|emb|CAB16631| (Z99330) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377680|emb|CAB16632| (Z99331) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377682|emb|CAB16634| (Z99333) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 34.0 bits (76), Expect = 0.43
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGTRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|625622|pir||E47330 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (strain ERS200) (fragment)
Length = 210
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 87 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 145
>gi|2970331 (AF040623) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 285
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 165
>gi|1800131 (U82097) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ +R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKNNRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154373 (AF114273) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154407 (AF114290) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154426 (AF114300) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1470134 (U64108) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 247
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 100 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 158
>gi|4377644|emb|CAA74840| (Y14500) pol protein [Human immunodeficiency virus type 1]
Length = 394
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F L+ + RP TAF + Q+ +PQG+K +P F S T
Sbjct: 237 TVLDVGDAYFSCPLDPDFRPYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 295
>gi|130583|sp|P10401|POLY_DROME RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON GYPSY [CONTAINS:
REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
>gi|74643|pir||GNFFG1 retrovirus-related pol polyprotein
- fruit fly (Drosophila melanogaster) transposon gypsy
Length = 1035
Score = 34.0 bits (76), Expect = 0.43
Identities = 18/53 (33%), Positives = 31/53 (57%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
L +L ++F+ LDL+ G+ Q+ L DR KT+F + + +F +P G +N
Sbjct: 264 LANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGK-YEFCRLPFGLRN 315
>gi|929567|emb|CAA27371| (X03734) reverse transcriptase-like enzyme (930 aa) [Drosophila
melanogaster]
Length = 930
Score = 34.0 bits (76), Expect = 0.43
Identities = 18/53 (33%), Positives = 31/53 (57%)
Query: 47 LRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKN 205
L +L ++F+ LDL+ G+ Q+ L DR KT+F + + +F +P G +N
Sbjct: 244 LANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGK-YEFCRLPFGLRN 295
>gi|1470158 (U64121) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 251
Score = 34.0 bits (76), Expect = 0.43
Identities = 19/53 (35%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETQGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|3133305 (AF038601) pol protein [Sus scrofa]
Length = 410
Score = 34.0 bits (76), Expect = 0.43
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFI-----DDKNRLMQFTCMPQGFKNNPDNF 220
++++LDL+D FF + L+ +P F + + +T +PQGFKN+P F
Sbjct: 214 WYTVLDLKDAFFCLRLHPTSQPLFTFEWRDPGTGRTGQLTWTRLPQGFKNSPTIF 268
>gi|3930716 (AF090531) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 216
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 78 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 136
>gi|3930588 (AF090467) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 216
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 78 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 136
>gi|4205055 (U69591) pol polyprotein [Human immunodeficiency virus type 1]
Length = 912
Score = 34.0 bits (76), Expect = 0.43
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 171 TVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 229
>gi|130614|sp|P04588|POL_HV1MA POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ]
Length = 1002
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 261 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 319
>gi|130612|sp|P18802|POL_HV1ND POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|74626|pir||GNLJND
pol polyprotein - human immunodeficiency virus type 1
(isolate NDK) >gi|328158 (M27323) pol polyprotein
(NH2-terminus uncertain) [Human immunodeficiency virus
type 1]
Length = 1002
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 261 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 319
>gi|130619|sp|P24740|POL_HV1U4 POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|328906 (M62320) pol
protein [Human immunodeficiency virus type 1]
Length = 1002
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ R TAF + Q+ +PQG+K +P F S T
Sbjct: 261 TVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMT 319
>gi|1065288|pdb|1HNI|B Human immunodeficiency virus type 1
Length = 427
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1065294|pdb|1HNV|B Human immunodeficiency virus type 1 >gi|1827920|pdb|1DLO|B Chain B,
Human Immunodeficiency Virus Type 1
>gi|1942047|pdb|1TVR|B Chain B, Hiv-1 Rt9-Cl Tibo
Length = 427
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1289518 (U53870) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 670
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1924988 (U83604) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|2194008|pdb|1UWB|B Chain B, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 427
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2460382 (AF021295) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSXT 140
>gi|2460388 (AF021298) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 80 LLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
+LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 83 VLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 140
>gi|2460402 (AF021305) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3089480 (AF047280) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3089488 (AF047284) reverse transcriptase [Human immunodeficiency virus type
1] >gi|3089492 (AF047286) reverse transcriptase [Human
immunodeficiency virus type 1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3089490 (AF047285) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930598 (AF090472) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930614 (AF090480) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L E R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLYEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930622 (AF090484) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930624 (AF090485) reverse transcriptase [Human immunodeficiency virus type
1] >gi|3930626 (AF090486) reverse transcriptase [Human
immunodeficiency virus type 1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930662 (AF090504) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930676 (AF090511) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930690 (AF090518) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|3930692 (AF090519) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 220
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 82 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 140
>gi|640349|pdb|3HVT|B Human immunodeficiency virus type 1
Length = 398
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 106 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 164
>gi|3930714 (AF090530) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 209
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 71 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 129
>gi|4139739|pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4139741|pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|130610|sp|P04589|POL_HV1EL POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ]
Length = 1002
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 261 TVLDVGDAYFSVPLDEDFRKYTAFTISSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 319
>gi|4389176|pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
>gi|4389179|pdb|1HVU|D Chain D, Human Immunodeficiency
Virus Type 1 Reverse Transcriptase Complexed With A
33-Base Nucleotide Rna Pseudoknot >gi|4389182|pdb|1HVU|G
Chain G, Human Immunodeficiency Virus Type 1 Reverse
Transcriptase Complexed With A 33-Base Nucleotide Rna
Pseudoknot >gi|4389185|pdb|1HVU|J Chain J, Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 554
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|280492|pir||S23570 pol polyprotein homolog - fungus (Cladosporium fulvum) transposon
CfT-1 (fragment) >gi|2564|emb|CAA77891| (Z11866) Reverse
Transcriptase [Cladosporium fulvum]
Length = 1045
Score = 33.6 bits (75), Expect = 0.56
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 56 LHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNP 211
L G ++++ +DL D F+ + + + KTAF + L +F MP G N P
Sbjct: 401 LTGSDWYTKIDLRDAFYAIRMAEGEEWKTAF-RTRYGLYEFLVMPMGLTNAP 451
Score = 32.8 bits (73), Expect = 0.96
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 150 LMTKTG*CNLPACLKDLKTILTIFHRGLHIVLCDLIGNGCFSYIDDILVYSK-TKEEHDT 326
L+ G N PA +DL ++ L DL+ +Y+DDILVY+K + +EH
Sbjct: 441 LVMPMGLTNAPASCQDL----------VNETLRDLLDVCVVAYMDDILVYTKGSLQEHTK 490
Query: 327 NLKLVEERLKK 359
++ V ERL K
Sbjct: 491 QVQDVFERLTK 501
>gi|130634|sp|P04026|POL_IPHA PUTATIVE POL POLYPROTEIN [CONTAINS: ENDONUCLEASE; REVERSE
TRANSCRIPTASE ] >gi|74619|pir||GNHYIH retrovirus-related
pol polyprotein - golden hamster intracisternal
A-particle H18
Length = 863
Score = 33.6 bits (75), Expect = 0.56
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 80 LLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNP 211
++D++D FF + L DRP+ AF + ++ Q+ +PQG N+P
Sbjct: 104 IIDIKDCFFSIPLYPRDRPRFAFTIPSLNHMEPDKRFQWKVLPQGMANSP 153
>gi|896047 (U28646) reverse transcriptase/RNaseH [Human immunodeficiency virus
type 1]
Length = 566
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2338299 (AF009373) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 202 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|2338306 (AF009377) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 202 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|2338310 (AF009379) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 202 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|2338338 (AF009396) pol polyprotein [Human immunodeficiency virus type 1]
Length = 392
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 202 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 260
>gi|3403227 (AF061642) pol protein [Human immunodeficiency virus type 1]
Length = 1000
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 259 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMT 317
>gi|3549997|emb|CAA12681| (AJ225944) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 94 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 152
>gi|4205663 (AF033146) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSNMT 68
>gi|4205665 (AF033147) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4205667 (AF033148) pol protein [Human immunodeficiency virus type 1]
Length = 92
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 10 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 68
>gi|4235406 (AF096886) pol polyprotein [Human immunodeficiency virus type 1]
Length = 349
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 208 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 266
>gi|4377762|gb|AAD19234| (AF056644) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|60230|emb|CAA28012| (X04415) pol polyprotein (NH2-terminus uncertain; AA at 1963)
[Human immunodeficiency virus type 1]
Length = 902
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 161 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 219
>gi|4377764|gb|AAD19235| (AF056645) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377766|gb|AAD19236| (AF056646) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|4377768|gb|AAD19237| (AF056647) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 218
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|130620|sp|P04585|POL_HV1H2 POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|327367 (M92997) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 191
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 48 TVLDVGDAYFSVPLHEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMT 106
>gi|587129|emb|CAA85505| (Z37142) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 573
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|74623|pir||GNVWLV pol polyprotein - human immunodeficiency virus type 1 (isolate
LAV-1a)
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|1055031 (U39362) POL polyprotein precursor [Human immunodeficiency virus
type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|1171166 (U43096) pol polyprotein [Human immunodeficiency virus type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|1176376 (U26546) Pol [Human immunodeficiency virus type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D F V L+ E R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAXFSVPLDXEXRKYTAFTIPSTHNETPGIRYQYNVLPQGWKGSPTIFPSSMT 320
>gi|1772626 (U21135) pol polyprotein [Human immunodeficiency virus type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|1857261 (U76035) pol protein [Human immunodeficiency virus type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLHEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|2801490 (AF033817) Pr gag-pro-pol [Human T-cell lymphotropic virus type 1]
Length = 1462
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/56 (33%), Positives = 29/56 (50%), Gaps = 6/56 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNFSSGS 232
+ +DL+D FFQ+ L + +P AF + + +PQGFKN+P F
Sbjct: 675 HLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQL 734
Query: 233 TH 238
H
Sbjct: 735 AH 736
>gi|3098584 (AF049495) pol polyprotein [Human immunodeficiency virus type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|3114555 (AF005495) pol polyprotein [Human immunodeficiency virus type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGLRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|221478|dbj|BAA00993| (D10112) pol polyprotein [Human immunodeficiency virus type 1]
Length = 1003
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 262 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 320
>gi|4139740|pdb|1RTD|B Chain B, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance >gi|4139742|pdb|1RTD|D Chain D, Structure Of
A Catalytic Complex Of Hiv-1 Reverse Transcriptase:
Implications For Nucleoside Analog Drug Resistance
Length = 414
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 105 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 163
>gi|329516 (M92819) pol polyprotein [Human T-cell lymphotropic virus type I]
Length = 117
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/56 (33%), Positives = 29/56 (50%), Gaps = 6/56 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNFSSGS 232
+ +DL+D FFQ+ L + +P AF + + +PQGFKN+P F
Sbjct: 41 HLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQL 100
Query: 233 TH 238
H
Sbjct: 101 AH 102
>gi|885617 (U16771) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 560
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|999814|pdb|1HMV|A Human immunodeficiency virus type 1
Length = 560
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1421213|pdb|1RTH|A Human immunodeficiency virus type 1 >gi|1421215|pdb|1RTI|A Human
immunodeficiency virus type 1 >gi|1421217|pdb|1RTJ|A
Human immunodeficiency virus type 1
>gi|1431729|pdb|1VRT|A Human immunodeficiency virus type
1 >gi|1431733|pdb|1VRU|A Human immunodeficiency virus
type 1
Length = 560
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1827604|pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase >gi|2098304|pdb|1RT2|A Chain
A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Complexed With Tnk-651 >gi|2098306|pdb|1RT1|A Chain A,
Crystal Structure Of Hiv-1 Reverse Transcriptase
Complexed With Mkc-442 >gi|2981786|pdb|1KLM|A Chain A,
Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
Length = 560
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2723929 (AF027399) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|2801525 (AF033822) Pr gag-pro-pol [Walleye dermal sarcoma virus]
Length = 1751
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/63 (31%), Positives = 37/63 (57%)
Query: 35 ISKRLRSLHGYEYFSLLDLEDGFFQVGLNHEDRPKTAFIDDKNRLMQFTCMPQGFKNNPD 214
+S SLH +F+++DL + FF V ++ + + AF + ++ +T +PQGF ++P
Sbjct: 846 LSNLAPSLH---WFTVIDLSNAFFSVPIHKDSQYLFAFTFEGHQ-YTWTVLPQGFIHSPT 901
Query: 215 NFS 223
FS
Sbjct: 902 LFS 904
>gi|3002878 (AF042105) gag-pol fusion polyprotein [Human immunodeficiency virus
type 1]
Length = 1435
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ R TAF + Q+ +PQG+K +P F S T
Sbjct: 694 TVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMT 752
>gi|3702886 (AF077692) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGGRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3702948 (AF077723) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|3947891|gb|AAC82598| (AF033819) Gag-Pol [Human immunodeficiency virus type 1]
Length = 1435
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 694 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 752
>gi|3930644 (AF090495) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 213
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 75 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 133
>gi|3930646 (AF090496) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 213
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 75 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 133
>gi|4235414 (AF096890) pol polyprotein [Human immunodeficiency virus type 1]
Length = 404
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 208 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 266
>gi|4377937|gb|AAD19297| (AF072936) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSIPLDEDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377944|gb|AAD19304| (AF072943) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377946|gb|AAD19306| (AF072945) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377949|gb|AAD19309| (AF072948) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|2723919 (AF027392) pol protein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377951|gb|AAD19311| (AF072950) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377952|gb|AAD19312| (AF072951) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377956|gb|AAD19316| (AF072955) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377961|gb|AAD19321| (AF072961) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4377972|gb|AAD19332| (AF072973) pol polyprotein [Human immunodeficiency virus type 1]
Length = 347
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 212 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 270
>gi|4558187|pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321547|pir||S32066 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938196|emb|CAA49957|
(X70603) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321552|pir||S32071 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938201|emb|CAA49960|
(X70606) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321553|pir||S32072 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938202|emb|CAA49953|
(X70599) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321554|pir||S32073 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938203|emb|CAA49961|
(X70607) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321556|pir||S32075 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938205|emb|CAA49962|
(X70608) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321557|pir||S32076 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938206|emb|CAA49955|
(X70601) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321559|pir||S32078 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938208|emb|CAA49956|
(X70602) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321577|pir||S32096 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938180|emb|CAA49966|
(X70612) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321591|pir||S32133 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|287971|emb|CAA50416|
(X71099) RNA-directed DNA polymerase [Human
immunodeficiency virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPXIFQSSMT 165
>gi|560781|dbj|BAA04704| (D21168) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 194
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 51 TILDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 109
>gi|1470190 (U64137) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 242
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 100 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 158
>gi|2582715|emb|CAA05344| (AJ002370) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2970251 (AF040582) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|2970255 (AF040584) pol polyprotein [Human immunodeficiency virus type 1]
>gi|2970257 (AF040585) pol polyprotein [Human
immunodeficiency virus type 1]
Length = 341
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|2970269 (AF040591) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|2970309 (AF040611) pol polyprotein [Human immunodeficiency virus type 1]
Length = 341
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 206 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|3089482 (AF047281) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 250
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321575|pir||S32094 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938223|emb|CAA49980|
(X70626) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ E R TAF + Q+ +PQG+K +P F + T
Sbjct: 107 TVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQNSMT 165
>gi|3089484 (AF047282) reverse transcriptase [Human immunodeficiency virus type
1] >gi|3089486 (AF047283) reverse transcriptase [Human
immunodeficiency virus type 1]
Length = 250
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|3413522|dbj|BAA32280| (AB016585) unnamed protein product [Tricholoma matsutake]
Length = 135
Score = 33.6 bits (75), Expect = 0.56
Identities = 14/32 (43%), Positives = 24/32 (74%)
Query: 273 SYIDDILVYSKTKEEHDTNLKLVEERLKKFNL 368
+Y+DDIL++++T EEH LV E+L+++ L
Sbjct: 1 AYLDDILIFTRTVEEHRRITCLVLEQLRQYKL 32
>gi|3930600 (AF090473) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 81 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMT 139
>gi|321555|pir||S32074 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|938204|emb|CAA49954|
(X70600) reverse transcriptase [Human immunodeficiency
virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377662|emb|CAB16614| (Z99311) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377675|emb|CAB16627| (Z99325) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377677|emb|CAB16629| (Z99328) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|321548|pir||S32067 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (fragment) >gi|321551|pir||S32070
RNA-directed DNA polymerase (EC 2.7.7.49) - human
immunodeficiency virus type 1 (fragment)
>gi|938197|emb|CAA49950| (X70596) reverse transcriptase
[Human immunodeficiency virus type 1]
>gi|938200|emb|CAA49952| (X70598) reverse transcriptase
[Human immunodeficiency virus type 1]
Length = 219
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4377681|emb|CAB16633| (Z99332) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 259
Score = 33.6 bits (75), Expect = 0.56
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGTEYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4545174|gb|AAD22427| (AF107385) pol protein [Human immunodeficiency virus type 1]
Length = 341
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 80 LLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
+LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 207 VLDVGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 264
>gi|130617|sp|P03368|POL_HV1PV POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ] >gi|328555 (K02083) pol
polyprotein (NH2-terminus uncertain) [Human
immunodeficiency virus type 1]
Length = 1015
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 274 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 332
>gi|328539 (M17740) reverse transcriptase (pol gene) [Human immunodeficiency
virus type 1]
Length = 286
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 84 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 142
>gi|74624|pir||GNVWVL pol polyprotein - human immunodeficiency virus type 1 (isolate LV)
>gi|224418|prf||1103299E pol gene [Human
immunodeficiency virus type 1]
Length = 1012
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 271 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 329
>gi|625618|pir||A47330 RNA-directed DNA polymerase (EC 2.7.7.49) - human immunodeficiency
virus type 1 (strain ERS100) (fragment)
Length = 210
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 87 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 145
>gi|699500 (U19949) putative frameshifting site at 2599; site of translation
initiation has not been determined [Human T-cell
lymphotropic virus type 1]
Length = 896
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/56 (33%), Positives = 29/56 (50%), Gaps = 6/56 (10%)
Query: 71 YFSLLDLEDGFFQVGLNHEDRPKTAFIDDK------NRLMQFTCMPQGFKNNPDNFSSGS 232
+ +DL+D FFQ+ L + +P AF + + +PQGFKN+P F
Sbjct: 109 HLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQL 168
Query: 233 TH 238
H
Sbjct: 169 AH 170
>gi|1398975|dbj|BAA12989| (D86068) Pol [Human immunodeficiency virus type 1]
Length = 1015
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 274 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 332
>gi|1470130 (U64106) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 246
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 99 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 157
>gi|1470188 (U64136) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 244
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 99 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 157
>gi|1800116 (U82089) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDQDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|1800133 (U82098) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|2970339 (AF040627) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 286
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|3550005|emb|CAA12685| (AJ225948) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 235
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 100 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 158
>gi|3550007|emb|CAA12686| (AJ225949) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 235
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 100 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 158
>gi|1398966|dbj|BAA12997| (D86069) Pol [Human immunodeficiency virus type 1]
Length = 1015
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 274 TVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 332
>gi|3930586 (AF090466) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 210
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 72 TVLDVGDAYFSVPLDXDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 130
>gi|4154377 (AF114275) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 33.6 bits (75), Expect = 0.56
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F + L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154381 (AF114277) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154383 (AF114278) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF + Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLHEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4154428 (AF114301) reverse transcriptase [Human immunodeficiency virus type
1]
Length = 240
Score = 33.6 bits (75), Expect = 0.56
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAF-IDDKNR-----LMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ + R TAF I N Q+ +PQG+K +P F S T
Sbjct: 107 TVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165
>gi|4324832|gb|AAD17096| (AF110970) gag-pol polyprotein [Human immunodeficiency virus type
1]
Length = 982
Score = 33.6 bits (75), Expect = 0.56
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 77 SLLDLEDGFFQVGLNHEDRPKTAFI------DDKNRLMQFTCMPQGFKNNPDNFSSGST 235
++LD+ D +F V L+ R TAF + Q+ +PQG+K +P F S T
Sbjct: 684 TVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMT 742
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66245629
Number of Sequences: 369800
Number of extensions: 1206483
Number of successful extensions: 4724
Number of sequences better than 10.0: 1711
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 1106
Number of HSP's that attempted gapping in prelim test: 4427
Number of HSP's gapped (non-prelim): 1320
length of query: 123
length of database: 113023754
effective HSP length: 51
effective length of query: 71
effective length of database: 94163954
effective search space: 6685640734
effective search space used: 6685640734
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)