BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII8R
(812 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P... 36 0.44
gi|1718072|sp|P52438|V120_HSV7J CAPSID ASSEMBLY PROTEIN U30 >gi|... 34 1.7
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 33 2.2
gi|4160381|emb|CAA09839| (AJ011856) ORF Q0140 [Saccharomyces cer... 32 5.0
gi|4493912|emb|CAB39021| (AL034558) predicted using hexExon; MAL... 32 5.0
gi|567922 (L36903) varI gene product [Saccharomyces cerevisiae] 32 5.0
gi|4049822 (AF063866) ORF MSV155 putative RNA polymerase second ... 32 6.5
gi|3845142 (AE001384) hypothetical protein [Plasmodium falciparum] 31 8.5
gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharo... 31 8.5
gi|4049751 (AF063866) ORF MSV228 leucine rich repeat gene family... 31 8.5
>gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P3.18 (PFC0425w), Hypothetical
protein, len: 4551 aa [Plasmodium falciparum]
Length = 4550
Score = 35.6 bits (80), Expect = 0.44
Identities = 26/89 (29%), Positives = 49/89 (54%), Gaps = 4/89 (4%)
Query: 472 NKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRANIIPG 293
N NI+++N +++ + EYLLNK N + + + + N L+K YN+ N
Sbjct: 3195 NNNISHNNNNILILL-MNEYLLNKDND-------INDYNIKEYLNEILNK-YNKFNFYEN 3245
Query: 292 NHNEIKEHYYLLHKTIPN----NIQQILKNYFF 206
N++ IK ++ HK +P+ ++ + K +FF
Sbjct: 3246 NYDIIKYSTFVDHKIVPSVSSFSVFDLYKLFFF 3278
>gi|1718072|sp|P52438|V120_HSV7J CAPSID ASSEMBLY PROTEIN U30 >gi|1139632 (U43400) U30 gene product
[Human herpesvirus 7] >gi|2746260 (AF037218) tegument
protein [Human herpesvirus 7]
Length = 938
Score = 33.6 bits (75), Expect = 1.7
Identities = 28/88 (31%), Positives = 43/88 (48%)
Query: 484 IKIYNKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRAN 305
+KI++KNI+ N D+Y Y L K N +IL L LEN + F H +R N
Sbjct: 273 LKIFSKNISAKN------EDLYIYPLLKTNFSILTFLSLEN--IFFHHGFIYH-ILHRTN 323
Query: 304 IIPGNHNEIKEHYYLLHKTIPNNIQQIL 221
I P ++ + ++ + IQQ+L
Sbjct: 324 ITPTEEKKLGK----INGFLNTVIQQVL 347
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 33.2 bits (74), Expect = 2.2
Identities = 37/106 (34%), Positives = 52/106 (48%), Gaps = 11/106 (10%)
Query: 478 IYNKNITYSNYSV-MYSSDIYEYLLNKLNSNILLTLHLENEK------LVDQENFCLHKF 320
I+NK I Y+ Y+ +Y I Y N N I+L + N K L++ N + +
Sbjct: 451 IHNKWILYNIYTYYLYYYHIKFY--NLYNKGIILNNN--NNKYNVIYFLINYFNLFSNYY 506
Query: 319 YNRANIIPGNHNEIKEHYYLLHKTIP----NNIQQILKNYFF*PNKTFIYYKFPDRL 161
Y N N+N I +YY NNIQ + N F N FIYYK+ +L
Sbjct: 507 YKIYN---NNYNFINSNYYFKKMNFILKNFNNIQ--ILNKLFYVNNIFIYYKYEKKL 558
>gi|4160381|emb|CAA09839| (AJ011856) ORF Q0140 [Saccharomyces cerevisiae]
Length = 398
Score = 32.1 bits (71), Expect = 5.0
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 475 YNKNITYSNY--SVMYSSDIYEYL---LNKLNSNILLTLHLENEKLVDQENFCLHKFYNR 311
YNKN+ N + + +Y+ + LN +N N ++ N+ +++ N KFY
Sbjct: 100 YNKNMEIMNTMNDKLINKLLYKMMTLKLNNMNINKIIMSKTINQHSLNKLNI---KFYYY 156
Query: 310 ANIIPGNHNEIKEHYY---------LLHKTIPNNIQQILKNYF 209
N I N+N +YY +++ + NN+ IL Y+
Sbjct: 157 NNDINNNNNNNNNNYYMNMMNKLMNIMNNNMNNNLCNILSYYY 199
>gi|4493912|emb|CAB39021| (AL034558) predicted using hexExon; MAL3P3.1 (PFC0325c), Hypothetical
protein, len: 1703 aa;; cDNA EST EMBL:T18200 comes from
this gene [Plasmodium falciparum]
Length = 1702
Score = 32.1 bits (71), Expect = 5.0
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 502 LQSYP*IKIYNKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHK 323
L SYP + +KN SN + Y + YL + ++S+ + + KL+ ++N C +K
Sbjct: 889 LDSYPYEMVEHKNKYTSNMNNQYDNKDSSYLYDDVSSSF---NNKKYTKLIIKDNLCNNK 945
Query: 322 F----YNRANIIPGNHNEIKEHY 266
+ Y+ N I GN K Y
Sbjct: 946 YKHNNYDNHNNIDGNDVYYKHPY 968
>gi|567922 (L36903) varI gene product [Saccharomyces cerevisiae]
Length = 404
Score = 32.1 bits (71), Expect = 5.0
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 475 YNKNITYSNY--SVMYSSDIYEYL---LNKLNSNILLTLHLENEKLVDQENFCLHKFYNR 311
YNKN+ N + + +Y+ + LN +N N ++ N+ +++ N KFY
Sbjct: 100 YNKNMEIMNTMNDKLINKLLYKMMTLKLNNMNINKIIMSKTINQHSLNKLNI---KFYYY 156
Query: 310 ANIIPGNHNEIKEHYY---------LLHKTIPNNIQQILKNYF 209
N I N+N +YY +++ + NN+ IL Y+
Sbjct: 157 NNDINNNNNNNNNNYYMNMMNKLMNIMNNNMNNNLCNILSYYY 199
>gi|4049822 (AF063866) ORF MSV155 putative RNA polymerase second largest subunit
cowpox RPO132 homolog (vaccinia A24R), similar to
SW:P17474 [Melanoplus sanguinipes entomopoxvirus]
Length = 1190
Score = 31.7 bits (70), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 463 ITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYN 314
I Y Y+ M S+DI EY+ NK+ L ++ +E+L D +C H YN
Sbjct: 976 INYPTYTDMTSTDIIEYIRNKIKP---LYPNISDEELNDIV-YCRHVIYN 1021
>gi|3845142 (AE001384) hypothetical protein [Plasmodium falciparum]
Length = 2539
Score = 31.3 bits (69), Expect = 8.5
Identities = 25/87 (28%), Positives = 41/87 (46%), Gaps = 16/87 (18%)
Query: 475 YNKNITYSNYSVMYSSDIYEYLL----------------NKLNSNILLTLHLENEKLVDQ 344
Y N Y +VMY DIY Y L NKLN ++ +N
Sbjct: 1015 YKGNNIYKIKTVMYQKDIYNYYLLNILLLVGVKIYIRQHNKLNKESEYNVNSQNLIGSKS 1074
Query: 343 ENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIPNNIQQILKN 215
++ ++ + + I N +I +Y + K I N ++I+ N
Sbjct: 1075 KSSKIYMVHFITSEISFNKKKILRPFYKIQKKINNKYKRIIMN 1117
>gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharomyces pombe]
Length = 1935
Score = 31.3 bits (69), Expect = 8.5
Identities = 20/63 (31%), Positives = 31/63 (48%)
Query: 394 SNILLTLHLENEKLVDQENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIPNNIQQILKN 215
S +++T E EK + C+++ N P I +YYL H TI N +Q+I +N
Sbjct: 1592 SKLVVTAFNELEK-----SACIYRV-NEETYAPTTLGRIVSYYYLFHTTIRNFVQKITEN 1645
Query: 214 YFF 206
F
Sbjct: 1646 AEF 1648
>gi|4049751 (AF063866) ORF MSV228 leucine rich repeat gene family protein,
similar to Amsacta moorei entomopoxvirus Q3 ORF
SW:P28854 [Melanoplus sanguinipes entomopoxvirus]
Length = 279
Score = 31.3 bits (69), Expect = 8.5
Identities = 24/87 (27%), Positives = 42/87 (47%), Gaps = 9/87 (10%)
Query: 484 IKIYNKNITYSNYSVMYSSDIYEYLLNKLNSNILL----TLHLENEKLVDQENFCLHKFY 317
+K+ NIT+ N S++Y+S++ ++ L+ T+ LE + CL
Sbjct: 112 LKVLKTNITFINKSILYNSNLLSIKFINCDTTSLILPQSTISLEFNNTFTYDYTCLESLI 171
Query: 316 NRANII-----PGNHNEIKEHYYLLHKTIPNNIQQI 224
N +I GN N +K I NNI+++
Sbjct: 172 NLKELILKKCYIGNLNTVK---------ISNNIEKL 198
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143698892
Number of Sequences: 369800
Number of extensions: 2731203
Number of successful extensions: 10139
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10134
Number of HSP's gapped (non-prelim): 17
length of query: 270
length of database: 113023754
effective HSP length: 54
effective length of query: 216
effective length of database: 93054554
effective search space: 20099783664
effective search space used: 20099783664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)