BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII5R
         (790 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2970431 (AF049132) NADH dehydrogenase subunit 4 [Florometra s...    34  1.6
gi|140550|sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF ...    32  4.8
gi|1022918 (U38184) ATPase subunit 6 [Trypanosoma cruzi]               32  6.2


>gi|2970431 (AF049132) NADH dehydrogenase subunit 4 [Florometra serratissima]
           Length = 457
           
 Score = 33.6 bits (75), Expect = 1.6
 Identities = 20/69 (28%), Positives = 39/69 (55%), Gaps = 1/69 (1%)

Query: 281 LYPSIINVLPLYIKLLSKHGFIYNLFFEYF*ITNYKFL-KNQYLKISFINNCFNFIVFLA 457
           ++ +++  LP  + LLS + F+ +LFF +F   NY F+ +  Y   S +   F F++F+ 
Sbjct: 150 MFYTLVGSLPFLVSLLSINVFLGSLFFPFF---NYCFIFELLYNSFSSLWWFFTFLIFIV 206

Query: 458 LFIIFPFCLY 487
              ++ F L+
Sbjct: 207 KMPVYGFHLW 216



>gi|140550|sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF 2136) >gi|81341|pir||A05037
            hypothetical protein 2136 - liverwort (Marchantia
            polymorpha) chloroplast >gi|11665|emb|CAA28078| (X04465)
            ORF2136 [Marchantia polymorpha]
            Length = 2136
            
 Score = 32.1 bits (71), Expect = 4.8
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 317  IKLLSKHGFIYNLFFEYF*ITNYKFLKNQYLKI-----SFINNCFNFIVFLALFIIFPFC 481
            +K LS H F       +F   NYK  KN  L       + INNC N    +   +IF F 
Sbjct: 1140 LKTLSFHNFKLKWNLRFFNEINYK--KNYLLNFLWSDFNLINNCNNLYWVIFSLVIFIFL 1197

Query: 482  LYQNI 496
             YQ I
Sbjct: 1198 YYQKI 1202



>gi|1022918 (U38184) ATPase subunit 6 [Trypanosoma cruzi]
           Length = 233
           
 Score = 31.7 bits (70), Expect = 6.2
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 305 LPLYIKLLSKHGFIYNLFFEYF*ITNYKFLKNQYLKISFINNCF-NFIVFLALFIIFPFC 481
           L L+  LLS H F+  +FF++            +  + FI  CF +F+VF+    +F FC
Sbjct: 145 LRLFCNLLSSH-FLLLMFFDFL----------YFFFVFFIFFCFLDFLVFILFIFVFCFC 193

Query: 482 L 484
           L
Sbjct: 194 L 194


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113885769
Number of Sequences: 368476
Number of extensions: 1904156
Number of successful extensions: 4809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4807
Number of HSP's gapped (non-prelim): 5
length of query: 263
length of database: 112640273
effective HSP length: 54
effective length of query: 208
effective length of database: 92742569
effective search space: 19290454352
effective search space used: 19290454352
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)