BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII59R
(783 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|420269|pir||B42148 GTP-binding protein rab10 - rat 114 9e-25
gi|3406428 (AF035646) Rab10 [Mus musculus] 114 9e-25
gi|131847|sp|P22127|RAO1_DISOM RAS-RELATED PROTEIN ORA1 >gi|1037... 114 9e-25
gi|131804|sp|P24409|RB10_CANFA RAS-RELATED PROTEIN RAB-10 >gi|10... 113 1e-24
gi|1710020|sp|P35288|RB23_MOUSE RAS-RELATED PROTEIN RAB-23 (RAB-... 109 2e-24
gi|2317272|dbj|BAA21744| (AB006189) Rab10 [Drosophila melanogaster] 112 3e-24
gi|1546067 (U68069) GTPase SUrab10p [Strongylocentrotus purpuratus] 109 2e-23
gi|3334326|sp|O14462|SEC4_CANAL RAS-RELATED PROTEIN SEC4 >gi|234... 103 3e-23
gi|464553|sp|P35281|RB10_RAT RAS-RELATED PROTEIN RAB-10 >gi|4553... 108 4e-23
gi|1362066|pir||S57471 small GTP-binding protein - garden pea >g... 101 3e-22
gi|1710015|sp|P51152|RB12_CANFA RAS-RELATED PROTEIN RAB-12 >gi|6... 98 4e-22
gi|2500067|sp|P55745|RB21_CANFA RAS-RELATED PROTEIN RAB-21 104 7e-22
gi|1703556 (U80033) strong similarity to the YPT1 sub-family of ... 104 1e-21
gi|2500066|sp|P70550|RB8B_RAT RAS-RELATED PROTEIN RAB-8B >gi|131... 103 1e-21
gi|2959746|emb|CAA12071| (AJ224685) putative SEC4 protein [Candi... 97 2e-21
gi|1362065|pir||S57462 small GTP-binding protein - garden pea >g... 98 3e-21
gi|134394|sp|P07560|SEC4_YEAST RAS-RELATED PROTEIN SEC4 >gi|6895... 97 3e-21
gi|2833268|sp|Q15771|RB30_HUMAN RAS-RELATED PROTEIN RAB-30 >gi|2... 102 3e-21
gi|131798|sp|P24407|RAB8_HUMAN RAS-RELATED PROTEIN RAB-8 (ONCOGE... 102 3e-21
gi|234746|bbs|53269 (S53268) MEL=RAS-related [human, Peptide, 20... 102 3e-21
gi|3893875 (AF106592) contains similarity to the RAS family (Pfa... 101 5e-21
gi|1362067|pir||S57478 small GTP-binding protein - garden pea >g... 97 6e-21
gi|1370196|emb|CAA98175| (Z73947) RAB8D [Lotus japonicus] 101 6e-21
gi|479442|pir||S33900 GTP-binding protein - tomato >gi|313029|em... 101 6e-21
gi|1370190|emb|CAA98172| (Z73944) RAB8A [Lotus japonicus] 97 8e-21
gi|464555|sp|P35284|RB12_RAT RAS-RELATED PROTEIN RAB-12 >gi|2065... 94 8e-21
gi|420270|pir||C42148 GTP-binding protein rab12 - rat (fragment) 94 8e-21
gi|131848|sp|P22128|RAB8_DISOM RAS-RELATED PROTEIN RAB-8 (ORA2) ... 101 8e-21
gi|549809|sp|P36861|YPT2_VOLCA GTP-BINDING PROTEIN YPTV2 >gi|486... 101 8e-21
gi|1362064|pir||S57474 small G protein - garden pea >gi|871514|e... 97 1e-20
gi|141305|sp|P17609|YPT2_SCHPO YPT1-RELATED PROTEIN 2 >gi|101034... 94 1e-20
gi|1710002|sp|P55258|RAB8_MOUSE RAS-RELATED PROTEIN RAB-8 (ONCOG... 100 1e-20
gi|134228|sp|P20790|SAS1_DICDI GTP-BINDING PROTEIN SAS1 >gi|1022... 93 2e-20
gi|1370192|emb|CAA98173| (Z73945) RAB8B [Lotus japonicus] 99 3e-20
gi|576556|dbj|BAA07682| (D42087) The gene product of HA0793 is r... 99 3e-20
gi|103720|pir||D38625 GTP-binding protein o-rab1 - electric ray ... 98 7e-20
gi|2808638|emb|CAA04701| (AJ001367) small GTP-binding protein [D... 98 7e-20
gi|134236|sp|P20791|SAS2_DICDI GTP-BINDING PROTEIN SAS2 >gi|1022... 94 8e-20
gi|1654144 (U38471) small GTP-binding protein rab [Brassica rapa] 97 1e-19
gi|2313045|dbj|BAA21711| (D84347) rab8 [Drosophila melanogaster] 97 1e-19
gi|114088|sp|P28186|ARA3_ARATH RAS-RELATED PROTEIN ARA-3 >gi|320... 97 1e-19
gi|131787|sp|P05711|RB1A_RAT RAS-RELATED PROTEIN RAB-1A >gi|2144... 97 2e-19
gi|1370198|emb|CAA98176| (Z73948) RAB8E [Lotus japonicus] 96 2e-19
gi|464523|sp|P34139|RB1A_DICDI RAS-RELATED PROTEIN RAB1A >gi|304... 96 2e-19
gi|103724|pir||B38625 GTP-binding protein ora2 - electric ray (D... 96 2e-19
gi|1370194|emb|CAA98174| (Z73946) RAB8C [Lotus japonicus] 96 2e-19
gi|2289961 (U82434) AtRAB8 [Arabidopsis thaliana] 96 2e-19
gi|1710016|sp|P51153|RB13_HUMAN RAS-RELATED PROTEIN RAB-13 >gi|5... 96 3e-19
gi|464557|sp|P35286|RB13_RAT RAS-RELATED PROTEIN RAB-13 >gi|4202... 96 3e-19
gi|466170|sp|P16976|YPT1_MAIZE GTP-BINDING PROTEIN YPTM1 >gi|283... 96 4e-19
gi|227603|prf||1707300A guanine nucleotide binding protein [Zea ... 95 5e-19
gi|549797|sp|P36019|YP53_YEAST GTP-BINDING PROTEIN YPT53 >gi|626... 95 5e-19
gi|3024527|sp|Q39433|RAB1_BETVU RAS-RELATED PROTEIN RAB1BV >gi|9... 95 6e-19
gi|4096662 (U35026) Rab1-like small GTP-binding protein [Petunia... 95 6e-19
gi|303736|dbj|BAA02109| (D12541) GTP-binding protein [Pisum sati... 95 6e-19
gi|1176710|sp|P01123|YPT1_YEAST GTP-BINDING PROTEIN YPT1 (PROTEI... 94 8e-19
gi|4293|emb|CAA25036| (X00209) coding sequence YP2 gene [Sacchar... 94 8e-19
gi|141302|sp|P11620|YPT1_SCHPO YPT1-RELATED PROTEIN 1 >gi|82804|... 94 1e-18
gi|2338554 (AF013572) small GTP-binding protein [Bombyx mori] 94 1e-18
gi|131785|sp|P22125|RAB1_DISOM RAS-RELATED PROTEIN ORAB-1 >gi|21... 94 1e-18
gi|82803|pir||S04590 GTP-binding protein ypt1 - fission yeast (S... 94 1e-18
gi|131786|sp|P11476|RB1A_HUMAN RAS-RELATED PROTEIN RAB-1A (YPT1-... 94 1e-18
gi|1370162|emb|CAA66447| (X97853) RAB1A [Lotus japonicus] 93 2e-18
gi|1016750 (U35432) rab-related GTP-binding protein [Schistosoma... 93 2e-18
gi|464530|sp|P34141|RABA_DICDI RAS-RELATED PROTEIN RABA >gi|3046... 81 2e-18
gi|1370144|emb|CAA98178| (Z73950) RAB11B [Lotus japonicus] 93 2e-18
gi|303748|dbj|BAA02115| (D12547) GTP-binding protein [Pisum sati... 93 2e-18
gi|92339|pir||S06147 GTP-binding protein rab1B - rat >gi|226486|... 93 2e-18
gi|1173333|sp|P41924|RYL1_YARLI RAS-LIKE GTP-BINDING PROTEIN RYL... 93 2e-18
gi|1053065 (U38465) small GTP-binding protein [Solanum lycopersi... 93 2e-18
gi|3341681 (AC003672) small GTP-binding protein [Arabidopsis tha... 87 3e-18
gi|1195465 (U24677) ras-related protein RAB-4 [Trypanosoma bruce... 87 3e-18
gi|541948|pir||S39565 rab1 protein - Soybean >gi|414832 (L14929)... 92 3e-18
gi|2133238|pir||S51495 small GTP-binding protein RYL1 - yeast (Y... 92 3e-18
gi|464524|sp|Q05974|RAB1_LYMST RAS-RELATED PROTEIN RAB-1A >gi|34... 92 3e-18
gi|3881017|emb|CAA21489| (AL032621) similar to Ras family [Caeno... 92 3e-18
gi|464531|sp|P34142|RABB_DICDI RAS-RELATED PROTEIN RABB >gi|3046... 92 3e-18
gi|2500076|sp|Q01890|YPT1_PHYIN RAS-LIKE GTP-BINDING PROTEIN YPT... 92 4e-18
gi|541978|pir||S41430 guanine nucleotide regulatory protein - fa... 92 4e-18
gi|1370166|emb|CAA98160| (Z73932) RAB1C [Lotus japonicus] 92 4e-18
gi|464561|sp|P35289|RB15_RAT RAS-RELATED PROTEIN RAB-15 >gi|4202... 92 4e-18
gi|2731374 (U80033) No definition line found [Caenorhabditis ele... 92 4e-18
gi|549795|sp|P36017|YP51_YEAST GTP-BINDING PROTEIN YPT51/VPS21 >... 89 4e-18
gi|623586 (L29273) putative [Nicotiana tabacum] 86 4e-18
gi|2313047|dbj|BAA21712| (D84348) rab-related protein 3 [Drosoph... 92 5e-18
gi|303750|dbj|BAA02116| (D12548) GTP-binding protein [Pisum sati... 92 5e-18
gi|421941|pir||S33160 GTP-binding protein, ras-related - common ... 90 6e-18
gi|3806150 (AF101310) similar to RAS-related proteins; contains ... 91 7e-18
gi|1381678 (U58854) small GTP-binding protein [Glycine max] 91 7e-18
gi|3024505|sp|Q40522|R11D_TOBAC RAS-RELATED PROTEIN RAB11D >gi|6... 91 7e-18
gi|730510|sp|P40392|RIC1_ORYSA RAS-RELATED PROTEIN RIC1 >gi|5421... 91 9e-18
gi|1575675 (U70366) rab6 [Plasmodium falciparum] 82 1e-17
gi|400976|sp|P31582|RHA1_ARATH RAS-RELATED PROTEIN RHA1 >gi|4786... 87 1e-17
gi|2853090|emb|CAA16940| (AL021768) small GTP-binding protein - ... 87 1e-17
gi|81634|pir||PS0279 GTP-binding protein ara-5 - Arabidopsis tha... 90 1e-17
gi|131803|sp|P10536|RB1B_RAT RAS-RELATED PROTEIN RAB-1B >gi|5700... 90 1e-17
gi|114093|sp|P28188|ARA5_ARATH RAS-RELATED PROTEIN ARA-5 >gi|217... 90 1e-17
gi|392973 (U00986) Rab3 [Aplysia californica] 90 1e-17
gi|303738|dbj|BAA02110| (D12542) GTP-binding protein [Pisum sati... 90 1e-17
gi|2317906 (U89959) ARA-5 [Arabidopsis thaliana] 90 1e-17
gi|2313033|dbj|BAA21705| (D84312) rab1 [Drosophila melanogaster] 90 1e-17
gi|3025293|sp|Q39572|YPT6_CHLRE RAS-RELATED PROTEIN YPTC6 >gi|13... 90 1e-17
gi|2708641 (AF037357) GTPase rab11b [Dictyostelium discoideum] 90 1e-17
gi|466172|sp|Q05737|YPT2_MAIZE GTP-BINDING PROTEIN YPTM2 >gi|283... 90 2e-17
gi|1628428|emb|CAA63555| (X92977) GTPase [Plasmodium falciparum] 81 2e-17
gi|421942|pir||S34253 GTP-binding protein, ras-related - common ... 90 2e-17
gi|466171|sp|P33723|YPT1_NEUCR GTP-BINDING PROTEIN YPT1 >gi|4188... 90 2e-17
gi|401686|sp|P31584|YPT1_VOLCA GTP-BINDING PROTEIN YPTV1 >gi|994... 90 2e-17
gi|1439642 (U64600) Similar to ras-related protein. [Caenorhabdi... 90 2e-17
gi|1845598 (L49400) Rab3 [Loligo pealei] 90 2e-17
gi|134131|sp|P17608|RYH1_SCHPO GTP-BINDING PROTEIN RYH1 >gi|1010... 84 2e-17
gi|303732|dbj|BAA02117| (D12549) GTP-binding protein [Pisum sati... 89 3e-17
gi|3024500|sp|Q40191|R11A_LOTJA RAS-RELATED PROTEIN RAB11A >gi|1... 89 3e-17
gi|3024503|sp|Q40520|R11C_TOBAC RAS-RELATED PROTEIN RAB11C >gi|6... 89 3e-17
gi|1613773 (U41269) Rab1 [Plasmodium falciparum] 89 3e-17
gi|2129606|pir||S71234 GTP-binding protein 3 - Arabidopsis thali... 89 3e-17
gi|4490750|emb|CAB38912| (AL035708) GTP-binding protein GB3 [Ara... 89 3e-17
gi|1381676 (U58853) small GTP-binding protein [Glycine max] 89 4e-17
gi|129323|sp|P11023|RB3A_BOVIN RAS-RELATED PROTEIN RAB-3A (SMG P... 89 4e-17
gi|131800|sp|P25228|RAB3_DROME RAS-RELATED PROTEIN RAB-3 >gi|849... 89 4e-17
gi|1946985 (AF000192) similar to RAS proteins;belongs to the YPT... 89 5e-17
gi|89584|pir||C29224 GTP-binding protein smg-25C - bovine 89 5e-17
gi|4539399|emb|CAB37465| (AL035526) ras-like GTP-binding protein... 89 5e-17
gi|141306|sp|P17610|YPT3_SCHPO YPT1-RELATED PROTEIN 3 (RAB) >gi|... 89 5e-17
gi|3024519|sp|P56371|RB4A_MOUSE RAS-RELATED PROTEIN RAB-4A >gi|2... 89 5e-17
gi|3024525|sp|Q15286|RB1C_HUMAN RAS-RELATED PROTEIN RAB-1C (GTP-... 88 6e-17
gi|1619853 (U68257) rab10-like [Caenorhabditis elegans] 88 6e-17
gi|1448941 (L48181) ypt-related protein [Brassica campestris] 88 6e-17
gi|131801|sp|P20336|RB3A_HUMAN RAS-RELATED PROTEIN RAB-3A >gi|10... 88 6e-17
gi|92341|pir||S01765 GTP-binding protein rab3 - rat >gi|57008|em... 88 6e-17
gi|131790|sp|P05713|RB3A_MOUSE RAS-RELATED PROTEIN RAB-3A >gi|47... 88 6e-17
gi|89582|pir||A29224 GTP-binding protein smg-25A - bovine 88 6e-17
gi|464532|sp|P34143|RABC_DICDI RAS-RELATED PROTEIN RABC >gi|3046... 85 6e-17
gi|3878422|emb|CAB01884| (Z79601) Simialrity to Rat RAS-related ... 88 8e-17
gi|2143772|pir||JC5066 GTP-binding protein rab 3C - rat >gi|1373... 88 8e-17
gi|1370164|emb|CAA98159| (Z73931) RAB1B [Lotus japonicus] 88 8e-17
gi|2500073|sp|Q39571|YPT1_CHLRE GTP-BINDING PROTEIN YPTC1 >gi|13... 88 8e-17
gi|1053067 (U38466) small GTP-binding protein [Solanum lycopersi... 88 8e-17
gi|349484 (L12031) GTP-binding protein homologue [Leishmania major] 88 8e-17
gi|131796|sp|P20340|RAB6_HUMAN RAS-RELATED PROTEIN RAB-6 >gi|106... 88 8e-17
gi|2313035|dbj|BAA21706| (D84313) rab2 [Drosophila melanogaster] 88 8e-17
gi|1304207|dbj|BAA11302| (D78197) rab3C [Rattus norvegicus] 87 1e-16
gi|1045640 (U37099) rab3c [Rattus norvegicus] 87 1e-16
gi|1616614|emb|CAA69701| (Y08425) small GTP-binding protein [Nic... 87 1e-16
gi|1053063 (U38464) small GTP-binding protein [Solanum lycopersi... 87 1e-16
gi|131849|sp|P22129|R11B_DISOM RAS-RELATED PROTEIN RAB-11B (ORA3... 87 1e-16
gi|131792|sp|P20338|RB4A_HUMAN RAS-RELATED PROTEIN RAB-4A >gi|10... 87 1e-16
gi|4097557 (U64911) ATFP8 [Arabidopsis thaliana] 87 2e-16
gi|1943772 (U97191) strong similarity to the YPT1 sub-family of ... 87 2e-16
gi|106185|pir||B34323 GTP-binding protein Rab2 - human >gi|55006... 87 2e-16
gi|131791|sp|P22750|RB4B_CANFA RAS-RELATED PROTEIN RAB-4B >gi|10... 87 2e-16
gi|131793|sp|P05714|RB4A_RAT RAS-RELATED PROTEIN RAB-4A >gi|9234... 87 2e-16
gi|1710026|sp|P51146|RB4B_RAT RAS-RELATED PROTEIN RAB-4B >gi|211... 87 2e-16
gi|1619869 (U68265) RAB-3 [Caenorhabditis elegans] >gi|1619871 (... 86 2e-16
gi|1370168|emb|CAA98161| (Z73933) RAB1D [Lotus japonicus] 86 2e-16
gi|1370170|emb|CAA98162| (Z73934) RAB1E [Lotus japonicus] 86 2e-16
gi|1619851 (U68256) rab8-like [Caenorhabditis elegans] 86 2e-16
gi|861352 (U28944) coded for by C. elegans cDNA CEESC15F; coded ... 86 2e-16
gi|2313037|dbj|BAA21707| (D84314) rab6 [Drosophila melanogaster] 86 2e-16
gi|1346952|sp|P48555|RALA_DROME RAS-RELATED PROTEIN RAL-A 86 3e-16
gi|464525|sp|P34140|RB1B_DICDI RAS-RELATED PROTEIN RAB1B >gi|304... 86 3e-16
gi|1125833 (U43283) Similar to ras-related protein; coded for by... 86 3e-16
gi|103721|pir||E38625 GTP-binding protein o-ral - electric ray (... 86 3e-16
gi|131788|sp|P08886|RAB2_HUMAN RAS-RELATED PROTEIN RAB-2 >gi|108... 86 3e-16
gi|266878|sp|Q01971|RAB2_RABIT RAS-RELATED PROTEIN RAB-2 >gi|109... 86 3e-16
gi|131789|sp|P05712|RAB2_RAT RAS-RELATED PROTEIN RAB-2 >gi|92340... 86 3e-16
gi|1079409|pir||S52325 GTP-binding protein - chicken >gi|664925|... 86 3e-16
gi|108107|pir||I36364 GTP-binding protein Rab2 - dog 86 3e-16
gi|1709998|sp|P53994|RAB2_MOUSE RAS-RELATED PROTEIN RAB-2 >gi|11... 86 3e-16
gi|131837|sp|P22124|RAL_DISOM RAS-RELATED PROTEIN O-RAL >gi|2131... 86 3e-16
gi|1588651|prf||2209256A rab2 gene [Gallus gallus] 86 3e-16
gi|464569|sp|P35276|RB3D_MOUSE RAS-RELATED PROTEIN RAB-3D >gi|20... 85 4e-16
gi|2253637 (U90206) GTP-binding protein rab3d [Rattus norvegicus] 85 4e-16
gi|283769|pir||A43958 GTP-binding protein, synaptic vesicle spec... 85 4e-16
gi|1172815|sp|P46638|R11B_MOUSE RAS-RELATED PROTEIN RAB-11B >gi|... 85 5e-16
gi|1710022|sp|P51156|RB26_RAT RAS-RELATED PROTEIN RAB-26 >gi|619... 85 7e-16
gi|2245111|emb|CAB10533| (Z97343) unnamed protein product [Arabi... 85 7e-16
gi|303730|dbj|BAA02108| (D12540) GTP-binding protein [Pisum sati... 85 7e-16
gi|420274|pir||G42148 GTP-binding protein rab16 - rat 85 7e-16
gi|464527|sp|P34213|RAB6_CAEEL RAS-RELATED PROTEIN RAB-6 HOMOLOG... 85 7e-16
gi|3024528|sp|Q39434|RAB2_BETVU RAS-RELATED PROTEIN RAB2BV >gi|9... 85 7e-16
gi|3879231|emb|CAA91296| (Z66499) similar to ras-related protein... 85 7e-16
gi|57010|emb|CAA30006| (X06890) rab4 protein (AA 1 - 213) [Rattu... 85 7e-16
gi|464563|sp|P35291|RB16_RAT RAS-RELATED PROTEIN RAB-16 >gi|2065... 84 9e-16
gi|3024552|sp|Q40723|RGP2_ORYSA RAS-RELATED PROTEIN RGP2 (GTP-BI... 84 9e-16
gi|3873658|emb|CAA20282| (AL031254) predicted using Genefinder; ... 84 9e-16
gi|3024499|sp|Q15907|R11B_HUMAN RAS-RELATED PROTEIN RAB-11B (GTP... 84 9e-16
gi|464526|sp|Q05975|RAB2_LYMST RAS-RELATED PROTEIN RAB-2 >gi|481... 84 9e-16
gi|4557959|pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector ... 84 1e-15
gi|3041721|sp|P35294|RB19_MOUSE RAS-RELATED PROTEIN RAB-19 >gi|1... 84 1e-15
gi|586807|sp|P38555|YPT8_YEAST GTP-BINDING PROTEIN YPT8 >gi|6300... 84 1e-15
gi|1370160|emb|CAA98186| (Z73958) RAB11J [Lotus japonicus] 84 1e-15
gi|1220272|emb|CAA63652| (X93161) small GTPase rab11 [Plasmodium... 84 1e-15
gi|3024501|sp|Q40193|R11C_LOTJA RAS-RELATED PROTEIN RAB11C >gi|1... 84 1e-15
gi|2500077|sp|Q99260|YPT6_YEAST GTP-BINDING PROTEIN YPT6 >gi|107... 77 2e-15
gi|1083775|pir||JC2528 Rab protein 26 - rat 83 2e-15
gi|3559768 (U23800) ral [Drosophila melanogaster] 83 2e-15
gi|346947|pir||A45384 small molecular weight GTP-binding protein... 83 2e-15
gi|3859936|gb|AAC72918| (AF081353) GTP-binding protein [Homo sap... 83 2e-15
gi|730512|sp|P40393|RIC2_ORYSA RAS-RELATED PROTEIN RIC2 >gi|4815... 83 2e-15
gi|3024529|sp|Q40195|R11E_LOTJA RAS-RELATED PROTEIN RAB11E >gi|1... 83 2e-15
gi|2463536|dbj|BAA22522| (D01046) GTP binding protein [Rattus ra... 83 2e-15
gi|549812|sp|P36586|YPT5_SCHPO YPT1-RELATED PROTEIN 5 >gi|422065... 81 2e-15
gi|439538 (U03614) guanine nucleotide regulatory protein [Parame... 83 2e-15
gi|3273209|dbj|BAA31150| (AB015237) Rab1C [Dictyostelium discoid... 83 2e-15
gi|3309068 (AF072935) small GTP-binding protein rab5 [Rattus nor... 83 2e-15
gi|541979|pir||S41431 guanine nucleotide regulatory protein - fa... 83 2e-15
gi|2313039|dbj|BAA21708| (D84315) rab11 [Drosophila melanogaster] 83 2e-15
gi|4538902|emb|CAB39639| (AL049482) rab7-like protein [Arabidops... 83 2e-15
gi|560504|emb|CAA82710| (Z29593) guanine nucleotide regulatory p... 83 2e-15
gi|131835|sp|P11234|RALB_HUMAN RAS-RELATED PROTEIN RAL-B >gi|689... 83 2e-15
gi|4490740|emb|CAB38902| (AL035708) small GTP-binding protein-li... 76 3e-15
gi|2129605|pir||S71233 GTP-binding protein 2 - Arabidopsis thali... 83 3e-15
gi|3024516|sp|O04486|RB1C_ARATH RAS-RELATED PROTEIN RAB11C >gi|2... 83 3e-15
gi|1370152|emb|CAA98182| (Z73954) RAB11F [Lotus japonicus] 83 3e-15
gi|3024526|sp|Q39222|RB1B_ARATH RAS-RELATED PROTEIN RAB11 >gi|21... 83 3e-15
gi|2623647 (AF030184) rab-like GTP-binding protein [Entamoeba hi... 79 3e-15
gi|4567198|gb|AAD23614|AC007168_5 (AC007168) putative GTP-bindin... 76 3e-15
gi|131794|sp|P18066|RB5A_CANFA RAS-RELATED PROTEIN RAB-5A >gi|10... 82 4e-15
gi|1346958|sp|P20339|RB5A_HUMAN RAS-RELATED PROTEIN RAB-5A 82 4e-15
gi|132521|sp|P25766|RGP1_ORYSA RAS-RELATED PROTEIN RGP1 (GTP-BIN... 82 4e-15
gi|1279542|emb|CAA95859| (Z71276) small GTPase [Mangifera indica] 82 4e-15
gi|3880506|emb|CAB07678| (Z93391) predicted using Genefinder; Si... 82 4e-15
gi|2723477|dbj|BAA24074| (D89824) GTP-binding protein [Arabidops... 82 5e-15
gi|420272|pir||E42148 GTP-binding protein rab14 - rat 82 5e-15
gi|450635 (L27417) GTP binding protein [Glycine max] 82 5e-15
gi|131805|sp|P24410|R11A_HUMAN RAS-RELATED PROTEIN RAB-11A (RAB-... 82 5e-15
gi|3024506|sp|Q40523|R11A_TOBAC RAS-RELATED PROTEIN RAB11A >gi|6... 82 5e-15
gi|549811|sp|P36863|YPT4_VOLCA GTP-BINDING PROTEIN YPTV4 (RAB2 H... 82 5e-15
gi|2500074|sp|Q39570|YPT4_CHLRE GTP-BINDING PROTEIN YPTC4 >gi|13... 82 5e-15
gi|2342660 (AF014120) GTP-binding protein sprab3 [Strongylocentr... 82 5e-15
gi|3955067|emb|CAA76143| (Y16259) Ral B protein [Xenopus laevis] 82 5e-15
gi|464559|sp|P35287|RB14_RAT RAS-RELATED PROTEIN RAB-14 >gi|2065... 82 6e-15
gi|2313041|dbj|BAA21709| (D84316) rab14 [Drosophila melanogaster] 82 6e-15
gi|2088715 (AF003139) strong similarity to the YPT1 sub-family o... 82 6e-15
gi|3024504|sp|Q40521|R11B_TOBAC RAS-RELATED PROTEIN RAB11B >gi|6... 82 6e-15
gi|129325|sp|P10949|RB3C_BOVIN RAS-RELATED PROTEIN RAB-3C (SMG P... 82 6e-15
gi|623584 (L29272) putative [Nicotiana tabacum] 82 6e-15
gi|114086|sp|P28185|ARA2_ARATH RAS-RELATED PROTEIN ARA-2 >gi|320... 82 6e-15
gi|466271 (U05227) Rar protein [Homo sapiens] 81 8e-15
gi|549813|sp|P36864|YPT5_VOLCA GTP-BINDING PROTEIN YPTV5 >gi|486... 81 8e-15
gi|1370182|emb|CAA98168| (Z73940) RAB7A [Lotus japonicus] 81 8e-15
gi|2245075|emb|CAB10497| (Z97343) GTP-binding RAB2A protein [Ara... 81 8e-15
gi|3915842|sp|Q96283|RB1A_ARATH RAS-RELATED PROTEIN RAB11A >gi|2... 81 8e-15
gi|1730881|sp|P51996|YP32_YEAST GTP-BINDING PROTEIN YPT32/YPT11 ... 81 8e-15
gi|548672|sp|P36860|RALB_RAT RAS-RELATED PROTEIN RAL-B >gi|48438... 81 8e-15
gi|420621|pir||S34138 transforming protein (K-ras) - Kirsten mur... 81 1e-14
gi|1172844|sp|P46203|RASL_RAT TRANSFORMING PROTEIN P21/K-RAS 2B ... 81 1e-14
gi|131880|sp|P08643|RASL_MOUSE TRANSFORMING PROTEIN P21/K-RAS 2B... 81 1e-14
gi|939930|emb|CAA80675| (Z23152) proto-oncogene protein [Kirsten... 81 1e-14
gi|190850 (M29893) GTP-binding protein (ral) [Homo sapiens] 81 1e-14
gi|131834|sp|P11233|RALA_HUMAN RAS-RELATED PROTEIN RAL-A >gi|689... 81 1e-14
gi|131836|sp|P05810|RALA_RAT RAS-RELATED PROTEIN RAL-A >gi|68953... 81 1e-14
gi|2623643 (AF030183) GTP-binding protein [Entamoeba histolytica] 81 1e-14
gi|542218|pir||A47733 GTP-binding protein ypt5 - fission yeast (... 78 1e-14
gi|2623670 (AF030545) proto-oncogene protein c-Ki-ras-1 [Oryzias... 80 1e-14
gi|3097256|emb|CAA76678| (Y17187) p21-ras protein [Platichthys f... 80 1e-14
gi|4204831 (U53782) K-ras [Cyprinus carpio] 80 1e-14
gi|548673|sp|P36412|RB11_DICDI RAS-RELATED PROTEIN RAB11 >gi|414... 80 1e-14
gi|439534 (U03612) guanine nucleotide regulatory protein [Parame... 80 1e-14
gi|3914558|sp|Q41640|RAB7_VIGAC RAS-RELATED PROTEIN RAB7 >gi|629... 80 1e-14
gi|1370158|emb|CAA98185| (Z73957) RAB11I [Lotus japonicus] 80 2e-14
gi|452357|emb|CAA82708| (Z29591) guanine nucleotide regulatory p... 80 2e-14
gi|439548 (U03619) guanine nucleotide regulatory protein [Parame... 80 2e-14
gi|1531769|emb|CAA69142| (Y07811) rab5C-like protein [Gallus gal... 80 2e-14
gi|3914559|sp|Q43463|RAB7_SOYBN RAS-RELATED PROTEIN RAB7 >gi|414... 80 2e-14
gi|3875760|emb|CAB07356| (Z92830) similar to RAS related protein... 80 2e-14
gi|106189|pir||F34323 GTP-binding protein Rab5 - human >gi|55007... 80 2e-14
gi|1370154|emb|CAA98183| (Z73955) RAB11G [Lotus japonicus] 80 2e-14
gi|1842071 (U87143) Nt-rab11e homolog [Mesembryanthemum crystall... 80 2e-14
gi|422713|pir||S31720 transforming protein (K-ras) - short-taile... 80 2e-14
gi|2118465|pir||I51971 K-ras protein - human >gi|186764 (M54968)... 80 2e-14
gi|131879|sp|P01118|RASL_HUMAN TRANSFORMING PROTEIN P21/K-RAS 2B... 80 2e-14
gi|1370156|emb|CAA98184| (Z73956) RAB11H [Lotus japonicus] 80 2e-14
gi|623592 (L29276) putative [Nicotiana tabacum] 80 2e-14
gi|541980|pir||S41432 guanine nucleotide regulatory protein - fa... 80 2e-14
gi|2516239|dbj|BAA22654| (AB004664) Rab33B [Mus musculus] >gi|25... 80 2e-14
gi|1076457|pir||S52024 small GTP-binding protein - rape >gi|2893... 79 3e-14
gi|548665|sp|P36409|RAB2_DICDI RAS-RELATED PROTEIN RAB2 >gi|4149... 79 3e-14
gi|2500064|sp|P79800|RASK_MELGA TRANSFORMING PROTEIN P21/K-RAS >... 79 3e-14
gi|3290012|gb|AAC25633| (AF026474) GTPase K-rasB [Pleuronectes v... 79 3e-14
gi|303746|dbj|BAA02114| (D12546) GTP-binding protein [Pisum sati... 79 3e-14
gi|549796|sp|P36018|YP52_YEAST GTP-BINDING PROTEIN YPT52 >gi|539... 71 4e-14
gi|1076545|pir||S49225 guanine nucleotide regulatory protein - f... 78 4e-14
gi|129324|sp|P10948|RB3B_BOVIN RAS-RELATED PROTEIN RAB-3B (SMG P... 79 4e-14
gi|2251196|emb|CAA74341| (Y14019) Rab3B protein [Rattus norvegicus] 79 4e-14
gi|1370176|emb|CAA98165| (Z73937) RAB2A [Lotus japonicus] 79 4e-14
gi|1765896|emb|CAA70498| (Y09314) Rab2-like protein [Arabidopsis... 79 4e-14
gi|3023913|sp|P91580|GS10_CIOIN PUTATIVE RAS-RELATED PROTEIN COS... 79 4e-14
gi|2245076|emb|CAB10498| (Z97343) GTP-binding RAB2A protein [Ara... 79 4e-14
gi|1172845|sp|P46629|RB25_RABIT RAS-RELATED PROTEIN RAB-25 >gi|4... 79 4e-14
gi|541949|pir||S39566 rab7 protein - Soybean 79 4e-14
gi|439542 (U03616) guanine nucleotide regulatory protein [Parame... 78 5e-14
gi|1208537 (U32185) guanine nucleotide regulatory protein [Glyci... 78 5e-14
gi|114089|sp|P28187|ARA4_ARATH RAS-RELATED PROTEIN ARA-4 >gi|816... 78 5e-14
gi|3036779|emb|CAB06484| (Z84479) match: multiple proteins; matc... 78 7e-14
gi|303742|dbj|BAA02112| (D12544) GTP-binding protein [Pisum sati... 78 7e-14
gi|267527|sp|Q01111|YPT3_NICPL RAS-RELATED PROTEIN YPT3 >gi|2829... 78 7e-14
gi|1710027|sp|P51147|RB5C_CANFA RAS-RELATED PROTEIN RAB-5C >gi|4... 78 7e-14
gi|1710028|sp|P51148|RB5C_HUMAN RAS-RELATED PROTEIN RAB-5C (L188... 78 7e-14
gi|2500075|sp|Q39573|YPT5_CHLRE GTP-BINDING PROTEIN YPTC5 >gi|13... 78 7e-14
gi|2764802|emb|CAA54822| (X77795) ras-like gene [Zea mays] 78 9e-14
gi|4417298|gb|AAD20423| (AC007019) putative RAS-related protein ... 78 9e-14
gi|2118462|pir||S52646 small GTP-binding protein gmr2 - soybean 78 9e-14
gi|1370184|emb|CAA98169| (Z73941) RAB7B [Lotus japonicus] 78 9e-14
gi|3024502|sp|Q40194|R11D_LOTJA RAS-RELATED PROTEIN RAB11D >gi|1... 78 9e-14
gi|3426326 (AF079459) small ras-like GTPase [Drosophila melanoga... 78 9e-14
gi|642121 (L35845) small GTP-binding protein [Oryza sativa] 78 9e-14
gi|1346957|sp|P49104|RB2B_MAIZE RAS-RELATED PROTEIN RAB-2-B >gi|... 77 1e-13
gi|303740|dbj|BAA02111| (D12543) GTP-binding protein [Pisum sati... 77 1e-13
gi|131802|sp|P20337|RB3B_HUMAN RAS-RELATED PROTEIN RAB-3B >gi|10... 77 1e-13
gi|1707014 (U78721) GTP binding protein isolog [Arabidopsis thal... 77 1e-13
gi|400977|sp|P31583|RHN1_NICPL RAS-RELATED PROTEIN RHN1 >gi|1002... 77 1e-13
gi|114085|sp|P19892|ARA1_ARATH RAS-RELATED PROTEIN ARA-1 >gi|815... 77 1e-13
gi|1370178|emb|CAA98166| (Z73938) RAB5A [Lotus japonicus] 76 1e-13
gi|3256092|emb|CAA80473| (Z22820) Rab22a protein [Canis familiaris] 71 1e-13
gi|499068|emb|CAA54506| (X77301) GTPase [Glycine max] 77 2e-13
gi|1172842|sp|Q07983|RASK_MONDO TRANSFORMING PROTEIN P21/K-RAS >... 77 2e-13
gi|4490676|emb|CAB38603| (AL035655) ras-related protein [Schizos... 77 2e-13
gi|464565|sp|Q05976|RB18_LYMST RAS-RELATED PROTEIN RAB-18A >gi|4... 77 2e-13
gi|1174149 (U44104) small GTP binding protein Rab7 [Homo sapiens] 77 2e-13
gi|213478 (M73694) ras-1 protein [Oncorhynchus mykiss] 77 2e-13
gi|627253|pir||A54321 transforming protein c-Ki-ras-1, hepatic -... 76 2e-13
gi|464570|sp|P35239|RB5B_HUMAN RAS-RELATED PROTEIN RAB-5B >gi|28... 76 2e-13
gi|131797|sp|P18067|RAB7_CANFA RAS-RELATED PROTEIN RAB-7 >gi|108... 76 2e-13
gi|1710001|sp|P09527|RAB7_RAT RAS-RELATED PROTEIN RAB-7 (RAS-REL... 76 2e-13
gi|1709999|sp|P51149|RAB7_HUMAN RAS-RELATED PROTEIN RAB-7 >gi|10... 76 2e-13
gi|3452220 (AF031927) small G-protein [Trypanosoma cruzi] 64 2e-13
gi|439536 (U03613) guanine nucleotide regulatory protein [Parame... 76 3e-13
gi|4105817 (AF050174) Rab7 [Oryctolagus cuniculus] 76 3e-13
gi|1346956|sp|P49103|RB2A_MAIZE RAS-RELATED PROTEIN RAB-2-A >gi|... 76 3e-13
gi|400923|sp|P31022|RAB7_PEA RAS-RELATED PROTEIN RAB7 >gi|485497... 76 3e-13
gi|131860|sp|P22278|RAS1_RHIRA RAS-LIKE PROTEIN 1 >gi|100995|pir... 76 3e-13
gi|464552|sp|Q05147|RASK_XENLA TRANSFORMING PROTEIN P21/K-RAS >g... 76 3e-13
gi|227605|prf||1707302A ras oncogene [Xenopus laevis] 76 3e-13
gi|2117166|emb|CAB09136| (Z95624) Ras like GTPase [Homo sapiens] 76 3e-13
gi|2832648|emb|CAA16723| (AL021710) membrane-bound small GTP-bin... 76 3e-13
gi|1710000|sp|P51150|RAB7_MOUSE RAS-RELATED PROTEIN RAB-7 >gi|21... 76 3e-13
gi|92022|pir||S01934 GTP-binding protein, 23K - rat 75 5e-13
gi|266879|sp|P29687|RAB5_TOBAC RAS-RELATED PROTEIN RAB5 >gi|1003... 75 5e-13
gi|1491714|emb|CAA68227| (X99962) rab-related GTP-binding protei... 75 5e-13
gi|4105819 (AF050175) Rab7 [Homo sapiens] 75 5e-13
gi|1405561|emb|CAA67153| (X98540) FSGTP1 [Fagus sylvatica] 75 6e-13
gi|1575028 (U53177) Psmras1 [Schistosoma mansoni] 75 6e-13
gi|1877405|emb|CAA68211| (X99951) localizes in diffuse reticular... 75 6e-13
gi|1890611|emb|CAA72269| (Y11479) Ras protein homologue [Schisto... 75 6e-13
gi|1710017|sp|P35293|RB18_MOUSE RAS-RELATED PROTEIN RAB-18 >gi|4... 75 6e-13
gi|1710019|sp|P51154|RB22_CANFA RAS-RELATED PROTEIN RAB-22 >gi|6... 68 7e-13
gi|3914521|sp|O04157|RAB7_ARATH RAS-RELATED PROTEIN RAB7 >gi|206... 75 8e-13
gi|548666|sp|P36410|RAB4_DICDI RAS-RELATED PROTEIN RAB4 >gi|4149... 75 8e-13
gi|464564|sp|P35292|RB17_MOUSE RAS-RELATED PROTEIN RAB-17 >gi|42... 75 8e-13
gi|1370186|emb|CAA98170| (Z73942) RAB7C [Lotus japonicus] 75 8e-13
gi|2350954|dbj|BAA22004| (AB002764) Ras-related protein RAB7 [En... 74 1e-12
gi|1020093|dbj|BAA06702| (D31906) mgp2 GTP-binding protein [Zea ... 74 1e-12
gi|3914557|sp|Q40787|RAB7_PENCL RAS-RELATED PROTEIN RAB7 (POSSIB... 74 1e-12
gi|4566765|gb|AAD23450|AF116859_1 (AF116859) small GTPase rabE [... 70 1e-12
gi|131838|sp|P23640|RB27_RAT RAS-RELATED PROTEIN RAB-27A (RAB-27... 71 1e-12
gi|1173334|sp|P41925|RYL2_YARLI RAS-LIKE GTP-BINDING PROTEIN RYL... 74 1e-12
gi|3876435|emb|CAB04205| (Z81516) Similarity to Human RAS-relate... 74 1e-12
gi|439546 (U03618) guanine nucleotide regulatory protein [Parame... 73 2e-12
gi|3875761|emb|CAB07357| (Z92830) similar to RAS related protein... 73 2e-12
gi|2500071|sp|Q14088|GS10_HUMAN SMALL GTP-BINDING PROTEIN S10 >g... 73 2e-12
gi|2500072|sp|P97950|GS10_MOUSE SMALL GTP-BINDING PROTEIN S10 >g... 73 2e-12
gi|1235593|emb|CAA65444| (X96663) GTPase [Rattus norvegicus] 68 2e-12
gi|2500069|sp|Q13636|RB31_HUMAN RAS-RELATED PROTEIN RAB-31 >gi|1... 66 2e-12
gi|2118484|pir||JC4961 rab protein 22B - human >gi|1457954 (U570... 66 2e-12
gi|1710003|sp|P51151|RAB9_HUMAN RAS-RELATED PROTEIN RAB-9 >gi|11... 73 2e-12
gi|1589843 (U68768) rab10 GTPase homolog SUrab10 [Strongylocentr... 73 2e-12
gi|548667|sp|P36411|RAB7_DICDI RAS-RELATED PROTEIN RAB7 >gi|4149... 73 2e-12
gi|2388544|dbj|BAA22160| (D84488) small GTP-binding protein [Hom... 67 3e-12
gi|3875377|emb|CAA87774| (Z47808) similar to GTP binding protein... 73 3e-12
gi|1370172|emb|CAA98163| (Z73935) RAB1X [Lotus japonicus] 73 3e-12
gi|206543 (M94043) rab-related GTP-binding protein [Rattus norve... 69 3e-12
gi|439532 (U03611) guanine nucleotide regulatory protein [Parame... 72 4e-12
gi|2815620 (AF032713) c-Ki-ras-2 protooncogene [Oryzias latipes] 72 4e-12
gi|1055116 (U39996) coded for by C. elegans cDNA CEESY59F; simi... 72 4e-12
gi|1399721 (U56930) R-ras1 homolog [Caenorhabditis elegans] >gi|... 72 4e-12
gi|623588 (L29274) putative [Nicotiana tabacum] 72 4e-12
gi|479657|pir||S35058 GTP-binding protein S10 - human >gi|449433... 72 4e-12
gi|1931577 (U57094) Rab27a [Homo sapiens] 69 4e-12
gi|4572590|gb|AAC50271| (U38654) Rab27 [Homo sapiens] 69 4e-12
gi|280689|pir||A37355 transforming protein (ras) - African clawe... 72 5e-12
gi|2854135 (AF045637) Similar to RAS-related protein; coded for ... 72 5e-12
gi|2129843|pir||S52647 small GTP-binding protein gmr1 - soybean ... 72 5e-12
gi|68936|pir||TVMSK transforming protein K-ras - mouse 71 7e-12
gi|3023915|sp|Q20365|GS10_CAEEL PUTATIVE RAS-RELATED PROTEIN F43... 71 7e-12
gi|131875|sp|P01116|RASK_HUMAN TRANSFORMING PROTEIN P21/K-RAS 2A... 71 7e-12
gi|417590|sp|P32883|RASK_MOUSE TRANSFORMING PROTEIN P21/K-RAS 2A 71 7e-12
gi|223752|prf||0909261A protein Calu1 Ki-ras [Homo sapiens] 71 7e-12
gi|1020092|dbj|BAA06701| (D31905) mgp1 GTP-binding protein [Zea ... 71 7e-12
gi|3845201 (AE001399) RAB GTPase [Plasmodium falciparum] 71 7e-12
gi|3551877 (AF081681) GTP binding protein RARE7L [Dictyostelium ... 69 7e-12
gi|1419156|emb|CAA65717| (X96991) putative GTP-binding protein [... 71 9e-12
gi|585773|sp|P24408|RAB9_CANFA RAS-RELATED PROTEIN RAB-9 >gi|486... 71 9e-12
gi|1877404|emb|CAA68210| (X99951) localizes adjacent and posteri... 71 9e-12
gi|3334309|sp|Q91806|RASN_XENLA TRANSFORMING PROTEIN P21/N-RAS >... 71 9e-12
gi|131886|sp|P05774|RAS_CARAU RAS-LIKE PROTEIN >gi|85494|pir||S0... 71 9e-12
gi|3599487 (AF085280) Ras protein [Xenopus laevis] 71 9e-12
gi|623590 (L29275) putative [Nicotiana tabacum] 71 9e-12
gi|2500068|sp|O00194|RB2B_HUMAN RAS-RELATED PROTEIN RAB-27B >gi|... 71 9e-12
gi|1370188|emb|CAA98171| (Z73943) RAB7D [Lotus japonicus] 71 9e-12
gi|4545231|gb|AAD22451|AF116243_1 (AF116243) RAS-related GTP-bin... 71 9e-12
gi|769801|emb|CAA54507| (X77302) GTP binding protein [Glycine max] 71 9e-12
gi|1093939|prf||2105181A c-Ki-ras protooncogene [Rivulus marmora... 71 1e-11
gi|2072749|emb|CAA73253| (Y12715) proto-oncogene K-Ras2A [Xenopu... 71 1e-11
gi|3219964|sp|O13876|YE1B_SCHPO PUTATIVE RAS-RELATED PROTEIN C1B... 69 1e-11
gi|2190|emb|CAA39797| (X56386) rab9 [Canis familiaris] 70 2e-11
gi|172363 (K01971) RAS2 protein [Saccharomyces cerevisiae] 70 2e-11
gi|1710014|sp|P01120|RAS2_YEAST RAS-LIKE PROTEIN 2 >gi|2144594|p... 70 2e-11
gi|131882|sp|P12825|RASN_CAVPO TRANSFORMING PROTEIN P21/N-RAS >g... 70 2e-11
gi|3874153|emb|CAA97427| (Z73103) similar to RAS-related protein... 70 2e-11
gi|230680|pdb|2Q21| c-H-Ras p21 Protein Catalytic Domain (Muta... 69 3e-11
gi|230266|pdb|1Q21| c-H-Ras p21 Protein Catalytic Domain Compl... 69 3e-11
gi|131869|sp|P01112|RASH_HUMAN TRANSFORMING PROTEIN P21/H-RAS-1 ... 69 3e-11
gi|131883|sp|P01111|RASN_HUMAN TRANSFORMING PROTEIN P21/N-RAS >g... 69 3e-11
gi|131884|sp|P08556|RASN_MOUSE TRANSFORMING PROTEIN P21/N-RAS >g... 69 3e-11
gi|131873|sp|P20171|RASH_RAT TRANSFORMING PROTEIN P21/H-RAS-1 (C... 69 3e-11
gi|464551|sp|Q04970|RASN_RAT TRANSFORMING PROTEIN P21/N-RAS >gi|... 69 3e-11
gi|131870|sp|P01113|RASH_MSV TRANSFORMING PROTEIN P21 >gi|68930|... 69 3e-11
gi|131872|sp|P23175|RASH_MSVNS TRANSFORMING PROTEIN P21 >gi|6893... 69 3e-11
gi|208115 (M30708) p21 protein [Artificial gene] >gi|223635|prf|... 69 3e-11
gi|91844|pir||S02054 transforming protein (N-ras) - mouse >gi|53... 69 3e-11
gi|3914539|sp|P93267|RAB7_MESCR RAS-RELATED PROTEIN RAB7A >gi|18... 69 3e-11
gi|131885|sp|P18262|RAS_ARTSA RAS-LIKE PROTEIN >gi|280565|pir||A... 69 3e-11
gi|1072199 (U40942) similar to GTP-binding RAS-related proteins ... 69 3e-11
gi|1619855 (U68258) rab11-like [Caenorhabditis elegans] 69 3e-11
gi|131874|sp|P01114|RASH_RRASV TRANSFORMING PROTEINS P21 AND P29... 69 3e-11
gi|131859|sp|P08646|RAS1_DROME RAS-LIKE PROTEIN 1 >gi|68945|pir|... 69 3e-11
gi|280937|pir||A43816 transforming protein (ras) - rabbit 69 3e-11
gi|131868|sp|P08642|RASH_CHICK TRANSFORMING PROTEIN P21/H-RAS-1 ... 69 3e-11
gi|131877|sp|P01117|RASK_MSVKI TRANSFORMING PROTEIN 21 >gi|68937... 69 3e-11
gi|156356 (M55535) ras protein [Caenorhabditis elegans] 69 3e-11
gi|126498|sp|P22981|LT60_CAEEL LET-60 RAS PROTEIN >gi|102524|pir... 69 3e-11
gi|3914550|sp|O24461|RAB7_PRUAR RAS-RELATED PROTEIN RAB7 >gi|231... 69 3e-11
gi|4291|emb|CAA25207| (X00528) URF c-ras (sc-2) [Saccharomyces c... 69 3e-11
gi|1710023|sp|P51159|RB27_HUMAN RAS-RELATED PROTEIN RAB-27A (RAB... 66 4e-11
gi|3880453|emb|CAA91357| (Z66516) similar to ras related protein... 69 4e-11
gi|1710360 (U79145) membrane associated GTP binding protein RAB1... 66 5e-11
gi|243893|bbs|79188 K-rev-1=transformation-suppressor [mice, Kir... 68 6e-11
gi|576243|pdb|1PLK| C-H-Ras P21 Protein Mutant With Gly 12 Rep... 68 6e-11
gi|332189 (J02207) p21 v-has transforming protein [Harvey murine... 68 6e-11
gi|225550|prf||1306284A gene Dmras85D [Drosophila melanogaster] 68 6e-11
gi|131871|sp|P01115|RASH_MSVHA TRANSFORMING PROTEINS P21 AND P29... 68 6e-11
gi|2118466|pir||I80324 PR371 c-K-ras oncogene - human (fragment)... 68 6e-11
gi|2865392 (AF035011) GTP binding protein [Plasmodium falciparum] 59 6e-11
gi|1388197 (U59878) low-Mr GTP-binding protein Rab32 [Homo sapiens] 68 8e-11
gi|231162|pdb|5P21| c-H-Ras p21 Protein (Amino Acids 1 - 166) ... 68 8e-11
gi|515076|pdb|1AGP| C-H-Ras P21 Protein Mutant With Gly 12 Rep... 68 8e-11
gi|494936|pdb|821P| C-H-Ras P21 Protein (Residues 1 - 166) Mut... 68 8e-11
gi|494886|pdb|421P| H-Ras P21 Protein Mutant With Gly 12 Repla... 68 8e-11
gi|494721|pdb|221P| H-Ras P21 Protein Mutant With Asp 38 Repla... 68 8e-11
gi|4150910|emb|CAA77070| (Y18167) ras protein [Suberites domuncula] 68 8e-11
gi|61559|emb|CAA25322| (X00740) transforming protein p21 [Murine... 68 8e-11
gi|2833245|sp|Q13637|RB32_HUMAN RAS-RELATED PROTEIN RAB-32 >gi|1... 68 8e-11
gi|3434937|dbj|BAA32410| (AB000281) krev-1 [Neurospora crassa] 68 8e-11
gi|133487|sp|P10833|RRAS_MOUSE RAS-RELATED PROTEIN R-RAS (P23) >... 68 8e-11
gi|1710021|sp|P35290|RB24_MOUSE RAS-RELATED PROTEIN RAB-24 (RAB-... 68 1e-10
gi|2500063|sp|Q61411|RASH_MOUSE TRANSFORMING PROTEIN P21/H-RAS-1... 68 1e-10
gi|109930|pir||A41636 GTP-binding protein rah - mouse (fragment)... 63 1e-10
gi|1195467 (U24678) ras-related protein RAB-5 [Trypanosoma bruce... 67 1e-10
gi|68947|pir||TVHUC2 transforming protein ras (teratocarcinoma c... 67 1e-10
gi|226746|prf||1604384A ras oncogene [Malignant histiocytosis sa... 67 1e-10
gi|2507282|sp|P17082|RRA2_HUMAN RAS-RELATED PROTEIN R-RAS2 (RAS-... 67 1e-10
gi|417090|sp|P32835|GSP1_YEAST GTP-BINDING NUCLEAR PROTEIN GSP1/... 67 2e-10
gi|131866|sp|P08645|RAS3_DROME RAS-LIKE PROTEIN 3 (ROUGHENED PRO... 67 2e-10
gi|629626|pir||S45023 Rab protein - alfalfa >gi|488700|emb|CAA55... 67 2e-10
gi|1370174|emb|CAA98164| (Z73936) RAB1Y [Lotus japonicus] 67 2e-10
gi|417091|sp|P32836|GSP2_YEAST GTP-BINDING NUCLEAR PROTEIN GSP2/... 67 2e-10
gi|586381|sp|P38146|YB9J_YEAST HYPOTHETICAL RAS-RELATED 24.1 KD ... 66 2e-10
gi|494910|pdb|521P| H-Ras P21 Protein Mutant With Gly 12 Repla... 66 2e-10
gi|5094|emb|CAA26191| (X02331) SPRAS-protein [Schizosaccharomyce... 66 2e-10
gi|68942|pir||TVBYSR transforming protein ras - fission yeast (S... 66 2e-10
gi|1546069 (U68070) GTPase homolog [Strongylocentrotus purpuratus] 66 2e-10
gi|418594|sp|P32939|YPT7_YEAST GTP-BINDING PROTEIN YPT7 >gi|3229... 66 2e-10
gi|439556 (U03623) guanine nucleotide regulatory protein [Parame... 66 2e-10
gi|131863|sp|P04388|RAS2_DROME RAS-LIKE PROTEIN 2 >gi|1085160|pi... 66 2e-10
gi|131845|sp|P17080|RAN_HUMAN GTP-BINDING NUCLEAR PROTEIN RAN (TC4) 66 2e-10
gi|2118467|pir||I59431 PR310 c-K-ras oncogene - human (fragment)... 66 2e-10
gi|2500199|sp|Q35638|RAC1_PEA RAC-LIKE GTP BINDING PROTEIN RHO1 ... 64 3e-10
gi|2500061|sp|P79735|RAN_BRARE GTP-BINDING NUCLEAR PROTEIN RAN >... 66 3e-10
gi|3850118|emb|CAA10039| (AJ012477) Ran protein [Salmo salar] >g... 66 3e-10
gi|494922|pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Repla... 66 3e-10
gi|172361 (K01970) RAS1 protein [Saccharomyces cerevisiae] 66 3e-10
gi|1710013|sp|P01119|RAS1_YEAST RAS-LIKE PROTEIN 1 >gi|2144593|p... 66 3e-10
gi|1370180|emb|CAA98167| (Z73939) RAB5B [Lotus japonicus] 66 3e-10
gi|3334308|sp|P79737|RASN_BRARE TRANSFORMING PROTEIN P21/N-RAS (... 66 3e-10
gi|131867|sp|P22280|RAS3_RHIRA RAS-LIKE PROTEIN 3 >gi|168374 (M5... 66 3e-10
gi|439558 (U03624) guanine nucleotide regulatory protein [Parame... 66 3e-10
gi|100997|pir||C36365 transforming protein homolog MRAS3 - Rhizo... 66 3e-10
gi|2313043|dbj|BAA21710| (D84317) rab-related protein 4 [Drosoph... 64 4e-10
gi|2558666 (U49971) GTP binding protein Rop1At [Arabidopsis thal... 64 4e-10
gi|4097581 (U64923) NTGP2 [Nicotiana tabacum] 64 4e-10
gi|1109582 (L49402) RAS gene product [Microgadus tomcod] 66 4e-10
gi|223831|prf||1001202A protein c-ras sc1 [Saccharomyces cerevis... 66 4e-10
gi|3367672|emb|CAA19844| (AL031027) 1-evidence=predicted by matc... 66 4e-10
gi|3097258|emb|CAA76679| (Y17188) p21-ras protein [Platichthys f... 66 4e-10
gi|133486|sp|P10301|RRAS_HUMAN RAS-RELATED PROTEIN R-RAS (P23) >... 66 4e-10
gi|3929359|sp|O42785|RASL_COLTR RAS-LIKE PROTEIN >gi|2906025 (AF... 66 4e-10
gi|346437|pir||JC1455 GTP-binding protein Ran/TC4 - dog 66 4e-10
gi|4092054 (AF054183) GTP binding protein [Homo sapiens] 66 4e-10
>gi|420269|pir||B42148 GTP-binding protein rab10 - rat
Length = 200
Score = 114 bits (282), Expect = 9e-25
Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + V F ++ K + + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RFH+IT +YYR A GI LV+ + + +SF+ I KW I D+ L+GNK D +DD
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD-MDD 128
Query: 603 MNDIK--RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVN 767
+ + E A +RFF TSA N NI+K FL + E +L+ E NV+
Sbjct: 129 KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVD 185
>gi|3406428 (AF035646) Rab10 [Mus musculus]
Length = 200
Score = 114 bits (282), Expect = 9e-25
Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + V F ++ K + + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RFH+IT +YYR A GI LV+ + + +SF+ I KW I D+ L+GNK D +DD
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD-MDD 128
Query: 603 MNDIK--RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVN 767
+ + E A +RFF TSA N NI+K FL + E +L+ E NV+
Sbjct: 129 KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVD 185
>gi|131847|sp|P22127|RAO1_DISOM RAS-RELATED PROTEIN ORA1 >gi|103723|pir||A38625 GTP-binding protein
ora1 - electric ray (Discopyge ommata) >gi|213115
(M38390) GTP-binding protein [Discopyge ommata]
Length = 200
Score = 114 bits (282), Expect = 9e-25
Identities = 62/161 (38%), Positives = 92/161 (56%), Gaps = 2/161 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + V F ++ K + ++G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RFH+IT +YYR A GI LV+ + + +SF+ I KW I D+ L+GNK D+ D
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDK 129
Query: 603 MNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+K + E A +RFF TSA N NI+K FL + E +L+
Sbjct: 130 RVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQ 172
>gi|131804|sp|P24409|RB10_CANFA RAS-RELATED PROTEIN RAB-10 >gi|108104|pir||D36364 GTP-binding
protein Rab10 - dog >gi|915|emb|CAA39798| (X56387) rab10
[Canis familiaris]
Length = 200
Score = 113 bits (281), Expect = 1e-24
Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + V F ++ K + + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RFH+IT +YYR A GI LV+ + + +SF+ I KW I D+ L+GNK D +DD
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD-MDD 128
Query: 603 MNDIK--RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVN 767
+ + E A +RFF TSA N NI+K FL + E +L+ E NV+
Sbjct: 129 KRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSENVD 185
>gi|1710020|sp|P35288|RB23_MOUSE RAS-RELATED PROTEIN RAB-23 (RAB-15) >gi|631753|pir||S40244 rab23
protein - mouse >gi|438162|emb|CAA80474| (Z22821) Rab23
protein [Mus musculus] >gi|741024|prf||2006284A GTPase
Rab23 [Mus musculus]
Length = 237
Score = 109 bits (269), Expect = 2e-24
Identities = 58/127 (45%), Positives = 82/127 (63%), Gaps = 2/127 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ ++I +N E ++L +WDTAGQE F +ITK YYR A LVFS D SF+ I W
Sbjct: 45 DFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWR 104
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
E +VAEVG DIP L+ NK DLLDD + IK E + A + LRF+ TS ++ N+ ++F
Sbjct: 105 EKVVAEVG-DIPTALVQNKIDLLDD-SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 162
Query: 702 LEMGERMLK 728
+ E+ L+
Sbjct: 163 KYLAEKHLQ 171
Score = 24.7 bits (52), Expect = 2e-24
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQR 364
VGK+S++QR+ FT T+ F +R
Sbjct: 20 VGKSSMIQRYCKGIFTKDYKKTIGVDFLER 49
>gi|2317272|dbj|BAA21744| (AB006189) Rab10 [Drosophila melanogaster]
Length = 204
Score = 112 bits (278), Expect = 3e-24
Identities = 58/160 (36%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + F ++ K + + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RFH+IT +YYR A GI LV+ + +++SF+ I KW I D+ ++GNK D+ D
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDK 129
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+ + +R E A +RF TSA N NI++ F E+ E +L
Sbjct: 130 RVVNKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAIL 171
>gi|1546067 (U68069) GTPase SUrab10p [Strongylocentrotus purpuratus]
Length = 178
Score = 109 bits (270), Expect = 2e-23
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + +NG+ +KLQIWDTAGQERFH+IT +YYR A GI LV+ ++ +++FD I KW
Sbjct: 22 DFKIKTVELNGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIMQEKTFDNIAKWL 81
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDD-MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
I D+ L+GNK D+ D M + R ET A ++F TSA N N+++ F+
Sbjct: 82 RNIQEHANEDVEKMLLGNKCDMDDKRMINKDRGETIAKENGIKFMETSAKANINVEQAFM 141
Query: 705 EMGERMLK 728
+ +LK
Sbjct: 142 TLAADILK 149
>gi|3334326|sp|O14462|SEC4_CANAL RAS-RELATED PROTEIN SEC4 >gi|2345152 (AF015306) small GTP-binding
protein SEC4p [Candida albicans] >gi|2642182 (AF017183)
Sec4p [Candida albicans] >gi|3859676|emb|CAA22013|
(AL033503) ras-related protein sec4p [Candida albicans]
Length = 210
Score = 103 bits (254), Expect = 3e-23
Identities = 49/121 (40%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I G+ +KLQ+WDTAGQERF +IT YYR A GI L++ + D RSF+ ++ W+
Sbjct: 50 DFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWF 109
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN---DIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ + D IFL+GNK D D++N ++ + A +N+ F SA N+N+D I
Sbjct: 110 QTVTQHANEDAQIFLVGNKCD--DEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSI 167
Query: 699 FLEM 710
F E+
Sbjct: 168 FYEL 171
Score = 26.6 bits (57), Expect = 3e-23
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF+ D F S I T+
Sbjct: 25 VGKSCLLLRFVEDKFNPSFITTI 47
>gi|464553|sp|P35281|RB10_RAT RAS-RELATED PROTEIN RAB-10 >gi|455344 (M83677) RAB10 [Rattus
norvegicus]
Length = 200
Score = 108 bits (268), Expect = 4e-23
Identities = 65/174 (37%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + V F ++ K + + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RFH+IT +YYR A GI LV+ + + +SF+ I KW I D+ L+ NK D+
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDM--- 126
Query: 603 MNDIKRFETK------ATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNV 764
D KR K A +RFF TSA N NI+K FL + E +L+ E NV
Sbjct: 127 --DHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSENV 184
Query: 765 N 767
+
Sbjct: 185 D 185
>gi|1362066|pir||S57471 small GTP-binding protein - garden pea >gi|871510|emb|CAA90080|
(Z49900) small GTP-binding protein [Pisum sativum]
Length = 216
Score = 101 bits (249), Expect = 3e-22
Identities = 51/141 (36%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W
Sbjct: 51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWI 110
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIF 701
I +++ L+GNK D+ + + + + A ++FF TSA N N+D++F
Sbjct: 111 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVF 170
Query: 702 L----EMGERMLKIGHKMEKKGLNVNR 770
++ +R+ + K E + L +N+
Sbjct: 171 FSIARDIKQRLAETDSKTEPQTLKINQ 197
Score = 25.1 bits (53), Expect = 3e-22
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF +FT S I T+
Sbjct: 26 VGKSCLLLRFSDGSFTTSFITTI 48
>gi|1710015|sp|P51152|RB12_CANFA RAS-RELATED PROTEIN RAB-12 >gi|631513|pir||S40207 rab12 protein -
dog >gi|437985|emb|CAA80471| (Z22818) Rab12 protein
[Canis familiaris]
Length = 208
Score = 97.9 bits (240), Expect = 4e-22
Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + + G+ ++LQIWDTAGQERF+SIT YYR+A GI LV+ + +FD + KW
Sbjct: 42 DFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 101
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATN--MNLRFFPTSALQNKNIDKIF 701
+ I D + L+GNK D D ++ K + +RF SA N N+D+IF
Sbjct: 102 KMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIF 161
Query: 702 LEMGERMLK 728
L++ + +LK
Sbjct: 162 LKLVDDILK 170
Score = 28.2 bits (61), Expect = 4e-22
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS+++RF DTF + +TV
Sbjct: 17 VGKTSLMERFTDDTFCEACKSTV 39
>gi|2500067|sp|P55745|RB21_CANFA RAS-RELATED PROTEIN RAB-21
Length = 223
Score = 104 bits (257), Expect = 7e-22
Identities = 56/175 (32%), Positives = 102/175 (58%), Gaps = 2/175 (1%)
Query: 225 AAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQI 401
AA + FK+++LGE + + + ++ +K++ I G+ + L I
Sbjct: 11 AAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 70
Query: 402 WDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGN 581
WDTAGQERFH++ YYR++NG LV+ + D+ SF + W + + +GN+I + ++GN
Sbjct: 71 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 130
Query: 582 KYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEK 749
K DL + + I+ E+ A ++ + + TSA QNK I+++FL++ +RM++ E+
Sbjct: 131 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDER 187
>gi|1703556 (U80033) strong similarity to the YPT1 sub-family of RAS proteins
[Caenorhabditis elegans]
Length = 201
Score = 104 bits (256), Expect = 1e-21
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + + ++ K I + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RFH+IT +YYR A GI LV+ + + +SFD I KW I D+ ++GNK D+ D
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMILGNKCDMSDR 129
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+ +R E A + + F TSA N ++D F ++ E +L
Sbjct: 130 RVVSRERGEKIAQDHGISFHETSAKLNVHVDTAFYDLAEAIL 171
>gi|2500066|sp|P70550|RB8B_RAT RAS-RELATED PROTEIN RAB-8B >gi|1314637 (U53475) GTPase Rab8b
[Rattus norvegicus]
Length = 207
Score = 103 bits (255), Expect = 1e-21
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + + F ++ + I ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI LV+ + +++SFD I W I +D+ ++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
Query: 579 NKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMG-ERMLKIGHKM 743
NK D+ D K R E A + ++F TSA + N+++ F + + M K+ KM
Sbjct: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKM 177
>gi|2959746|emb|CAA12071| (AJ224685) putative SEC4 protein [Candida glabrata]
Length = 215
Score = 97.1 bits (238), Expect = 2e-21
Identities = 45/121 (37%), Positives = 75/121 (61%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + ING+ +KLQ+WDTAGQERF +IT YYR A GI LV+ + D+R+F I +W+
Sbjct: 56 DFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWF 115
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ + ++ + L+GNK D+ + ++ E A + L F +SA + N+++IF
Sbjct: 116 KTVNEHANDEAQLLLVGNKSDMDTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFT 175
Query: 708 M 710
+
Sbjct: 176 L 176
Score = 26.6 bits (57), Expect = 2e-21
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF+ D F S I T+
Sbjct: 31 VGKSCLLVRFVEDKFNPSFITTI 53
>gi|1362065|pir||S57462 small GTP-binding protein - garden pea >gi|871506|emb|CAA90081|
(Z49901) small GTP-binding protein [Pisum sativum]
Length = 215
Score = 98.3 bits (241), Expect = 3e-21
Identities = 49/142 (34%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W
Sbjct: 51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWI 110
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIF 701
I +++ L+GNK D+ + + + + A ++FF TSA N N++++F
Sbjct: 111 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVF 170
Query: 702 L----EMGERMLKIGHKMEKKGLNVNRR 773
++ +R+ K E + + +N++
Sbjct: 171 FSIARDIKQRLADTDSKSEPQTIKINQQ 198
Score = 25.1 bits (53), Expect = 3e-21
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF +FT S I T+
Sbjct: 26 VGKSCLLLRFSDGSFTTSFITTI 48
>gi|134394|sp|P07560|SEC4_YEAST RAS-RELATED PROTEIN SEC4 >gi|68957|pir||TVBYQ4 GTP-binding protein
SEC4 - yeast (Saccharomyces cerevisiae) >gi|172566
(M16507) ras-like protein [Saccharomyces cerevisiae]
>gi|836749|dbj|BAA09233| (D50617) Ras-related protein
[Saccharomyces cerevisiae] >gi|870823|dbj|BAA08071|
(D44604) RAS-RELATED PROTEIN SEC4 [Saccharomyces
cerevisiae]
Length = 215
Score = 96.7 bits (237), Expect = 3e-21
Identities = 44/123 (35%), Positives = 75/123 (60%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + ING+ +KLQ+WDTAGQERF +IT YYR A GI LV+ + D+R+F I +W+
Sbjct: 56 DFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWF 115
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ + ++ + L+GNK D+ + + E A + + F +SA + N+++IF
Sbjct: 116 KTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175
Query: 708 MGE 716
+ +
Sbjct: 176 LAK 178
Score = 26.6 bits (57), Expect = 3e-21
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF+ D F S I T+
Sbjct: 31 VGKSCLLVRFVEDKFNPSFITTI 53
>gi|2833268|sp|Q15771|RB30_HUMAN RAS-RELATED PROTEIN RAB-30 >gi|2136076|pir||JC4962 rab protein 30 -
human >gi|1457956 (U57092) Rab30 [Homo sapiens]
Length = 203
Score = 102 bits (252), Expect = 3e-21
Identities = 49/122 (40%), Positives = 77/122 (62%), Gaps = 1/122 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K + INGE +KLQIWDTAGQERF SIT++YYR+AN + L + + + SF C+ +W I
Sbjct: 49 KTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE 108
Query: 540 AEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
N + L+GNK DL + +R E + ++ + TSA ++ N++K+FL++
Sbjct: 109 QYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 168
Query: 717 RML 725
R++
Sbjct: 169 RLI 171
>gi|131798|sp|P24407|RAB8_HUMAN RAS-RELATED PROTEIN RAB-8 (ONCOGENE C-MEL) >gi|108113|pir||B36364
GTP-binding protein Rab8 - dog >gi|539607|pir||B49647
GTP-binding protein rab8 - human
>gi|452318|emb|CAA40065| (X56741) rab8 small GTP binding
protein [Homo sapiens] >gi|740474|prf||2005309A rab8
GTPase [Homo sapiens]
Length = 207
Score = 102 bits (252), Expect = 3e-21
Identities = 61/177 (34%), Positives = 91/177 (50%), Gaps = 2/177 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + V F ++ + I ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI LV+ + +++SFD I W I D+ ++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 579 NKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKK 752
NK D+ D K R E A + ++F TSA N N++ F + I KM+KK
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR---DIKAKMDKK 176
>gi|234746|bbs|53269 (S53268) MEL=RAS-related [human, Peptide, 206 aa] [Homo sapiens]
Length = 206
Score = 102 bits (252), Expect = 3e-21
Identities = 61/177 (34%), Positives = 91/177 (50%), Gaps = 2/177 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + V F ++ + I ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI LV+ + +++SFD I W I D+ ++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 579 NKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKK 752
NK D+ D K R E A + ++F TSA N N++ F + I KM+KK
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR---DIKAKMDKK 176
>gi|3893875 (AF106592) contains similarity to the RAS family (Pfam: PF00071,
score=220.5, E=2.4e-62, N=1) [Caenorhabditis elegans]
Length = 224
Score = 101 bits (250), Expect = 5e-21
Identities = 61/176 (34%), Positives = 92/176 (51%), Gaps = 3/176 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + V F ++ + I ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI LV+ + ++RSF+ I W I +D+ +IG
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDVERMIIG 120
Query: 579 NKYDLLDDMNDIK--RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEK 749
NK D +++ ++ R E A +F TSA N NID+ F + I KME+
Sbjct: 121 NKCD-IEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLAR---DIKSKMEQ 175
>gi|1362067|pir||S57478 small GTP-binding protein - garden pea >gi|871508|emb|CAA90082|
(Z49902) small GTP-binding protein [Pisum sativum]
Length = 215
Score = 97.1 bits (238), Expect = 6e-21
Identities = 48/142 (33%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W
Sbjct: 51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWI 110
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIF 701
I +++ L+GNK D+ + + + + A ++FF TSA N N++++F
Sbjct: 111 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVF 170
Query: 702 L----EMGERMLKIGHKMEKKGLNVNRR 773
++ +R+ + E + + +N++
Sbjct: 171 FSIARDIKQRLADTDSRSEPQTIKINQQ 198
Score = 25.1 bits (53), Expect = 6e-21
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF +FT S I T+
Sbjct: 26 VGKSCLLLRFSDGSFTTSFITTI 48
>gi|1370196|emb|CAA98175| (Z73947) RAB8D [Lotus japonicus]
Length = 214
Score = 101 bits (249), Expect = 6e-21
Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 7/187 (3%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 VKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWLRNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFL----EMGERMLK 728
L+GNK D+ + + + + A ++FF TSA N N++++F ++ +R+
Sbjct: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
Query: 729 IGHKMEKKGLNVNR 770
HK E L +N+
Sbjct: 184 TDHKAEPTTLKINQ 197
>gi|479442|pir||S33900 GTP-binding protein - tomato >gi|313029|emb|CAA49600| (X69980)
GTP-binding protein [Lycopersicon esculentum]
Length = 216
Score = 101 bits (249), Expect = 6e-21
Identities = 56/187 (29%), Positives = 98/187 (51%), Gaps = 7/187 (3%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDTGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFLEMG----ERMLK 728
L+GNK D+ + + + + A ++FF TSA N N++++F +G +R+ +
Sbjct: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIGKDIKQRLSE 183
Query: 729 IGHKMEKKGLNVNR 770
K E + + +N+
Sbjct: 184 SDSKTEPQSIRINQ 197
>gi|1370190|emb|CAA98172| (Z73944) RAB8A [Lotus japonicus]
Length = 216
Score = 96.7 bits (237), Expect = 8e-21
Identities = 48/141 (34%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W
Sbjct: 52 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIKNWI 111
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIF 701
I +++ L+GNK D+ + + + + A ++FF TSA N N++++F
Sbjct: 112 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 171
Query: 702 L----EMGERMLKIGHKMEKKGLNVNR 770
++ +R+ + E + + +N+
Sbjct: 172 FSIARDIKQRLADTDSRAEPQTIQINQ 198
Score = 25.1 bits (53), Expect = 8e-21
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF +FT S I T+
Sbjct: 27 VGKSCLLLRFSDGSFTTSFITTI 49
>gi|464555|sp|P35284|RB12_RAT RAS-RELATED PROTEIN RAB-12 >gi|206531 (M83676) RAB12 [Rattus
norvegicus]
Length = 197
Score = 93.6 bits (229), Expect = 8e-21
Identities = 51/127 (40%), Positives = 75/127 (58%), Gaps = 4/127 (3%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + + G+ ++LQIWDTAGQERF+SIT YYR+A GI LV+ + +FD + KW
Sbjct: 31 DFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 90
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ I D + L GNK D D ++F + T M R SA N N+D+
Sbjct: 91 KMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGM--RLSEPSAKDNFNVDE 148
Query: 696 IFLEMGERMLK 728
IFL++ + +LK
Sbjct: 149 IFLKLVDDILK 159
Score = 28.2 bits (61), Expect = 8e-21
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS+++RF DTF + +TV
Sbjct: 6 VGKTSLMERFTDDTFCEACKSTV 28
>gi|420270|pir||C42148 GTP-binding protein rab12 - rat (fragment)
Length = 197
Score = 93.6 bits (229), Expect = 8e-21
Identities = 51/127 (40%), Positives = 75/127 (58%), Gaps = 4/127 (3%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + + G+ ++LQIWDTAGQERF+SIT YYR+A GI LV+ + +FD + KW
Sbjct: 31 DFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 90
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ I D + L GNK D D ++F + T M R SA N N+D+
Sbjct: 91 KMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGM--RLCEPSAKDNFNVDE 148
Query: 696 IFLEMGERMLK 728
IFL++ + +LK
Sbjct: 149 IFLKLVDDILK 159
Score = 28.2 bits (61), Expect = 8e-21
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS+++RF DTF + +TV
Sbjct: 6 VGKTSLMERFTDDTFCEACKSTV 28
>gi|131848|sp|P22128|RAB8_DISOM RAS-RELATED PROTEIN RAB-8 (ORA2) >gi|213119 (M38391) GTP-binding
protein [Discopyge ommata]
Length = 210
Score = 101 bits (248), Expect = 8e-21
Identities = 56/179 (31%), Positives = 95/179 (52%), Gaps = 3/179 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + + F ++ + + ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI V+ + +++SFD I W I +D+ ++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
Query: 579 NKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMG-ERMLKIGHKMEKK 752
NK D+ + K R E A + ++F TSA + N+++ F+ + + M K+ KM +
Sbjct: 121 NKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNEN 180
Query: 753 GL 758
L
Sbjct: 181 SL 182
>gi|549809|sp|P36861|YPT2_VOLCA GTP-BINDING PROTEIN YPTV2 >gi|486944|pir||S36365 GTP-binding
protein yptV2 - Volvox carteri >gi|409162 (L08128)
GTP-binding protein [Volvox carteri]
Length = 217
Score = 101 bits (248), Expect = 8e-21
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K++ ++G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ + W
Sbjct: 49 DFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWM 108
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN--DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
I +++ L+GNK DL +D I R + A RF+ TSA N ++++ F
Sbjct: 109 RNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAF 168
Query: 702 LEMGERML 725
+ + + +L
Sbjct: 169 IAVAKDVL 176
>gi|1362064|pir||S57474 small G protein - garden pea >gi|871514|emb|CAA90079| (Z49899)
small G protein [Pisum sativum]
Length = 215
Score = 97.1 bits (238), Expect = 1e-20
Identities = 48/142 (33%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W
Sbjct: 51 DFKIRTIELDGKPIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWI 110
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIF 701
I +++ L+GNK D+ + + + + A ++FF TSA N N++++F
Sbjct: 111 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVF 170
Query: 702 L----EMGERMLKIGHKMEKKGLNVNRR 773
++ +R+ + E + + +N++
Sbjct: 171 FSIARDIKQRLADTDSRSEPQTIKINQQ 198
Score = 24.3 bits (51), Expect = 1e-20
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF +FT S I T+
Sbjct: 26 VGKSCLLLRFSDGSFTTSFIATI 48
>gi|141305|sp|P17609|YPT2_SCHPO YPT1-RELATED PROTEIN 2 >gi|101034|pir||S12790 GTP-binding protein
ypt2 - fission yeast (Schizosaccharomyces pombe)
>gi|5144|emb|CAA36707| (X52469) ypt2 gene product (AA
1-200) [Schizosaccharomyces pombe]
>gi|5150|emb|CAA37045| (X52864) ypt-related protein (AA
1-200) [Schizosaccharomyces pombe]
>gi|2414662|emb|CAB16405| (Z99262) ypt1-related protein
2. [Schizosaccharomyces pombe]
Length = 200
Score = 94.0 bits (230), Expect = 1e-20
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT YYR A GI L++ + D +SFD + W+
Sbjct: 45 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWF 104
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ ++ LIGNK D D ++ + A + ++F SA N N+D+ F
Sbjct: 105 SNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFF 164
Query: 705 EMGERMLK 728
+ + K
Sbjct: 165 TLAREIKK 172
Score = 27.4 bits (59), Expect = 1e-20
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF D+FT S I T+
Sbjct: 20 VGKSCLLLRFSEDSFTPSFITTI 42
>gi|1710002|sp|P55258|RAB8_MOUSE RAS-RELATED PROTEIN RAB-8 (ONCOGENE C-MEL) >gi|2118463|pir||I78851
gene MEL protein - mouse >gi|234748|bbs|53271 (S53270)
MEL=RAS-related [mice, Peptide, 206 aa] [Mus sp.]
Length = 206
Score = 100 bits (247), Expect = 1e-20
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + V F ++ + I ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI LV+ + +++SFD I W I D+ ++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 579 NKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEK 749
NK D+ D K R E A + ++F TSA N N++ F + I KM+K
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR---DIKAKMDK 175
>gi|134228|sp|P20790|SAS1_DICDI GTP-BINDING PROTEIN SAS1 >gi|102241|pir||A34716 GTP-binding protein
SAS1 - slime mold (Dictyostelium discoideum) >gi|167877
(M34457) GTP-binding protein (SAS2) [Dictyostelium
discoideum]
Length = 208
Score = 93.2 bits (228), Expect = 2e-20
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I + G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D++SF I W
Sbjct: 51 DFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWI 110
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLD-DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
I + + LIGNK D+ + + D R ++ A ++F TSA + N+++ F+
Sbjct: 111 RNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFI 170
Query: 705 EMGERMLK 728
+ + + K
Sbjct: 171 SLAKDIKK 178
Score = 27.4 bits (59), Expect = 2e-20
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF D+FT S I T+
Sbjct: 26 VGKSCLLLRFSEDSFTPSFITTI 48
>gi|1370192|emb|CAA98173| (Z73945) RAB8B [Lotus japonicus]
Length = 187
Score = 99.1 bits (243), Expect = 3e-20
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W
Sbjct: 22 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWI 81
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIF 701
I +++ L+GNK D+ + + + + A ++FF TSA N N+D++F
Sbjct: 82 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVF 141
Query: 702 L----EMGERMLKIGHKMEKKGLNVNR 770
++ +R+ K E + L +N+
Sbjct: 142 FSIARDIKQRVADNDSKAEPQTLKINQ 168
>gi|576556|dbj|BAA07682| (D42087) The gene product of HA0793 is related to Dictyostelium
discoideum RabB protein. [Homo sapiens]
Length = 161
Score = 99.1 bits (243), Expect = 3e-20
Identities = 47/124 (37%), Positives = 81/124 (64%), Gaps = 1/124 (0%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
G+ + L IWDTAGQERFH++ YYR++NG LV+ + D+ SF + W + + +GN+
Sbjct: 1 GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE 60
Query: 558 IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIG 734
I + ++GNK DL + + I+ E+ A ++ + + TSA QNK I+++FL++ +RM++
Sbjct: 61 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETA 120
Query: 735 HKMEK 749
E+
Sbjct: 121 QVDER 125
>gi|103720|pir||D38625 GTP-binding protein o-rab1 - electric ray (Discopyge ommata)
Length = 201
Score = 97.9 bits (240), Expect = 7e-20
Identities = 49/161 (30%), Positives = 87/161 (53%), Gaps = 1/161 (0%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W + I ++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTKK 128
Query: 603 MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D + A ++ + F TSA N+++ F+ M + K
Sbjct: 129 VVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 170
>gi|2808638|emb|CAA04701| (AJ001367) small GTP-binding protein [Daucus carota]
Length = 216
Score = 97.9 bits (240), Expect = 7e-20
Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 7/190 (3%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARPRADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEMDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFL----EMGERMLK 728
L+GNK D+ + + + + A ++FF SA N N++++F ++ +R+ +
Sbjct: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFEASAKTNMNVEEVFFSIAKDIKQRLAE 183
Query: 729 IGHKMEKKGLNVNRRKR 779
K E + + +N++++
Sbjct: 184 TDSKTEPQTIKINQQEQ 200
>gi|134236|sp|P20791|SAS2_DICDI GTP-BINDING PROTEIN SAS2 >gi|102242|pir||B34716 GTP-binding protein
SAS2 - slime mold (Dictyostelium discoideum) >gi|167875
(M34456) GTP-binding protein (SAS1) [Dictyostelium
discoideum]
Length = 203
Score = 94.4 bits (231), Expect = 8e-20
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I + G+ +KLQIWDTAGQERF +IT YYR A GI LV+ + D++SF I W
Sbjct: 51 DFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWI 110
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLD-DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
I + + LIGNK D+ + + D R ++ A ++F TSA + N+++ F+
Sbjct: 111 RNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFI 170
Query: 705 EMGERMLK 728
+ + + K
Sbjct: 171 GLAKDIKK 178
Score = 23.9 bits (50), Expect = 8e-20
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+ +L RF +FT S I T+
Sbjct: 26 VGKSCLLLRFSDGSFTPSFIATI 48
>gi|1654144 (U38471) small GTP-binding protein rab [Brassica rapa]
Length = 222
Score = 97.1 bits (238), Expect = 1e-19
Identities = 52/168 (30%), Positives = 87/168 (50%), Gaps = 3/168 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
L+GNK D+ + + + + A ++FF TSA N N++++F +G
Sbjct: 124 ILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIG 174
>gi|2313045|dbj|BAA21711| (D84347) rab8 [Drosophila melanogaster]
Length = 207
Score = 97.1 bits (238), Expect = 1e-19
Identities = 58/177 (32%), Positives = 89/177 (49%), Gaps = 2/177 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + + F ++ + I ++ + +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI LV+ + ++SF+ I W I D+ L+G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLG 120
Query: 579 NKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKK 752
NK +L D K R E A ++F TSA + N+++ FL + I K EK+
Sbjct: 121 NKCELTDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLAS---DIKAKTEKR 176
>gi|114088|sp|P28186|ARA3_ARATH RAS-RELATED PROTEIN ARA-3 >gi|320560|pir||JS0640 GTP-binding
protein ara-3 - Arabidopsis thaliana
>gi|217837|dbj|BAA00830| (D01025) small GTP-binding
protein [Arabidopsis thaliana]
Length = 216
Score = 97.1 bits (238), Expect = 1e-19
Identities = 52/168 (30%), Positives = 87/168 (50%), Gaps = 3/168 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
L+GNK D+ + + + + A ++FF TSA N N++++F +G
Sbjct: 124 ILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIG 174
>gi|131787|sp|P05711|RB1A_RAT RAS-RELATED PROTEIN RAB-1A >gi|2144601|pir||TVRTYP GTP-binding
protein Rab1 - rat >gi|206553 (J02998) ras protein
[Rattus norvegicus]
Length = 205
Score = 96.7 bits (237), Expect = 2e-19
Identities = 52/161 (32%), Positives = 89/161 (54%), Gaps = 5/161 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL--- 593
RF +IT +YYR A+GI +V+ + D SF+ + +W + I ++ L+GNK DL
Sbjct: 72 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131
Query: 594 -LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D K F A ++ + F TSA KN+++ F+ M + K
Sbjct: 132 KVVDYTTAKEF---ADSLGIPFLETSAKNEKNVEQSFMTMAAEIKK 174
>gi|1370198|emb|CAA98176| (Z73948) RAB8E [Lotus japonicus]
Length = 215
Score = 96.3 bits (236), Expect = 2e-19
Identities = 55/186 (29%), Positives = 94/186 (49%), Gaps = 8/186 (4%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK---- 728
L+GNK D+ + + + + A ++FF TSA N N++++F + + +
Sbjct: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
Query: 729 -IGHKMEKKGLNVN 767
K E G+ +N
Sbjct: 184 TDSSKTEPTGIKIN 197
>gi|464523|sp|P34139|RB1A_DICDI RAS-RELATED PROTEIN RAB1A >gi|304598 (L21009) Rab1A [Dictyostelium
discoideum] >gi|739974|prf||2004272A rab1A gene
[Dictyostelium discoideum]
Length = 167
Score = 96.3 bits (236), Expect = 2e-19
Identities = 52/156 (33%), Positives = 89/156 (56%), Gaps = 5/156 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I +NG+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR A+GI +V+ + D +F+ + +W + I ++ L+GNK DL+
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAK 128
Query: 600 ---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D N K F A ++ + F TSA Q+ N+++ F+ G
Sbjct: 129 KVVDFNTAKAF---ADSLQIPFLETSAKQSTNVEQAFMTNG 166
>gi|103724|pir||B38625 GTP-binding protein ora2 - electric ray (Discopyge ommata)
Length = 209
Score = 96.3 bits (236), Expect = 2e-19
Identities = 56/179 (31%), Positives = 95/179 (52%), Gaps = 3/179 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + + F ++ + + ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI V+ + +++SFD I W I +D+ ++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
Query: 579 NKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLEMG-ERMLKIGHKMEKK 752
NK D+ + K R E A + ++ F TSA + N+++ F+ + + M K+ KM +
Sbjct: 121 NKCDMNEKRQVSKERGEKLAIDYGIK-FETSAKSSINVEEAFITLARDIMTKLNKKMNEN 179
Query: 753 GL 758
L
Sbjct: 180 SL 181
>gi|1370194|emb|CAA98174| (Z73946) RAB8C [Lotus japonicus]
Length = 212
Score = 96.3 bits (236), Expect = 2e-19
Identities = 54/187 (28%), Positives = 96/187 (50%), Gaps = 7/187 (3%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQER +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 IKLQIWDTAGQERVRTITTAYYRGAKGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFL----EMGERMLK 728
L+GNK D+ + + + + A ++FF TSA N N++++F ++ +R+
Sbjct: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
Query: 729 IGHKMEKKGLNVNR 770
K E + + +N+
Sbjct: 184 TDSKAEPQTIKINQ 197
>gi|2289961 (U82434) AtRAB8 [Arabidopsis thaliana]
Length = 216
Score = 96.3 bits (236), Expect = 2e-19
Identities = 54/187 (28%), Positives = 96/187 (50%), Gaps = 7/187 (3%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I + +
Sbjct: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFL----EMGERMLK 728
L+GNK D+ + + + + A ++FF TSA N N++++F ++ +R+
Sbjct: 124 ILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLAD 183
Query: 729 IGHKMEKKGLNVNR 770
+ E + + +N+
Sbjct: 184 TDARAEPQTIKINQ 197
>gi|1710016|sp|P51153|RB13_HUMAN RAS-RELATED PROTEIN RAB-13 >gi|539606|pir||A49647 GTP-binding
protein Rab13 - human >gi|452320|emb|CAA53266| (X75593)
rab 13 [Homo sapiens] >gi|740475|prf||2005309B rab13
GTPase [Homo sapiens]
>gi|4506363|ref|NP_002861.1|pRAB13| RAB13, member RAS
oncogene family
Length = 203
Score = 96.0 bits (235), Expect = 3e-19
Identities = 57/178 (32%), Positives = 89/178 (49%), Gaps = 3/178 (1%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + + ++ + + I G+ +KLQ
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
+WDTAGQERF +IT YYR A GI LV+ + D++SF+ I W + I + L+G
Sbjct: 61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLG 120
Query: 579 NKYDLLDDMNDIKRFETK-ATNMNLRFFPTSALQNKNIDKIFLEMG-ERMLKIGHKMEKK 752
NK D+ K K A +RFF TSA + N+D+ F + + +LK G +
Sbjct: 121 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 180
Query: 753 G 755
G
Sbjct: 181 G 181
>gi|464557|sp|P35286|RB13_RAT RAS-RELATED PROTEIN RAB-13 >gi|420271|pir||D42148 GTP-binding
protein rab13 - rat (fragment) >gi|206533 (M83678) RAB13
[Rattus norvegicus]
Length = 164
Score = 96.0 bits (235), Expect = 3e-19
Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + + I G+ +KLQ+WDTAGQERF +IT +YYR A GI LV+ + D++SF+ I W
Sbjct: 5 DFKIRTVEIEGKRIKLQVWDTAGQERFKTITTSYYRGAMGIILVYDITDEKSFENIQNWM 64
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIF 701
+ I ++ L+GNK D ++ ++R E A +RFF TSA + N+D+ F
Sbjct: 65 KSIKENASAEVERLLLGNKCD-MEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAF 123
Query: 702 LEMGERML 725
+ +L
Sbjct: 124 SSLARDIL 131
>gi|466170|sp|P16976|YPT1_MAIZE GTP-BINDING PROTEIN YPTM1 >gi|283055|pir||A38202 ypt family - maize
>gi|287833|emb|CAA44918| (X63277) yptm1 [Zea mays]
Length = 208
Score = 95.6 bits (234), Expect = 4e-19
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 6/177 (3%)
Query: 246 FKILILGEXM*ERLVFF-NVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + F ++ + + + G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W + I + + L+GNK DL ++
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAEN 128
Query: 603 MN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE--RMLKIGHK--MEKKGLNVN 767
D + A + + F TSA ++ N+++ FL M + K G + +E+K NV
Sbjct: 129 RAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVV 188
Query: 768 RRK 776
+ K
Sbjct: 189 QMK 191
>gi|227603|prf||1707300A guanine nucleotide binding protein [Zea mays]
Length = 208
Score = 95.2 bits (233), Expect = 5e-19
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 6/177 (3%)
Query: 246 FKILILGEXM*ERLVFF-NVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + F ++ + + + G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W + I + + L+GNK DL ++
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRNVLVGNKCDLAEN 128
Query: 603 MN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE--RMLKIGHK--MEKKGLNVN 767
D + A + + F TSA ++ N+++ FL M + K G + +E+K NV
Sbjct: 129 RAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVV 188
Query: 768 RRK 776
+ K
Sbjct: 189 QMK 191
>gi|549797|sp|P36019|YP53_YEAST GTP-BINDING PROTEIN YPT53 >gi|626167|pir||S45168 GTP-binding
protein YPT53 - yeast (Saccharomyces cerevisiae)
>gi|483436|emb|CAA53771| (X76175) ypt53p [Saccharomyces
cerevisiae] >gi|758295|emb|CAA59824| (X85811) ORF N2223
[Saccharomyces cerevisiae] >gi|1301998|emb|CAA95969|
(Z71369) ORF YNL093w [Saccharomyces cerevisiae]
Length = 220
Score = 95.2 bits (233), Expect = 5e-19
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 225 AAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQI 401
AAI K+++LGE + + + + +K I +G+ +K +I
Sbjct: 6 AAIPTLTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEI 65
Query: 402 WDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGN 581
WDTAGQERF + YYRNA +VF + ++ SF W E + +VG+DI I L+GN
Sbjct: 66 WDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGN 125
Query: 582 KYDLL--DDMNDIKRFETKAT-----NMNLRFFPTSALQNKNIDKIFLEMGERM 722
K DLL DD N+ + + A NL +F SA +NI +IF +GE++
Sbjct: 126 KMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKV 179
>gi|3024527|sp|Q39433|RAB1_BETVU RAS-RELATED PROTEIN RAB1BV >gi|974776|emb|CAA89021| (Z49152) small
G protein [Beta vulgaris]
Length = 215
Score = 94.8 bits (232), Expect = 6e-19
Identities = 51/167 (30%), Positives = 86/167 (50%), Gaps = 3/167 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
PP A K+L++G+ + + + ++ + I ++G+
Sbjct: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQERF +IT YYR A GI LV+ + D+ SF+ I W I +++
Sbjct: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
Query: 567 FLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
L+GNK D+ + + + + A ++FF TSA N N++++F +
Sbjct: 124 ILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
>gi|4096662 (U35026) Rab1-like small GTP-binding protein [Petunia x hybrida]
Length = 202
Score = 94.8 bits (232), Expect = 6e-19
Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + + SF+ + +W I + L+GNK DL+++
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLSEIDRYANESVCKLLVGNKCDLVEN 128
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM-GERMLKIGHK 740
+ D + + A + + F TSA + N+++ FL M GE K+G++
Sbjct: 129 KVVDTQTGKALADELGIPFLETSAKDSINVEQAFLTMAGEIKKKMGNQ 176
>gi|303736|dbj|BAA02109| (D12541) GTP-binding protein [Pisum sativum]
>gi|738934|prf||2001457B GTP-binding protein [Pisum
sativum]
Length = 222
Score = 94.8 bits (232), Expect = 6e-19
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ +K + ING+ +K QIWDTAGQER+ ++T YYR A G LV+ + ++FD + +W E
Sbjct: 46 FQTKTVTINGKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWVE 105
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ + I I LIGNK DL+D D F A + L F TSA +N++
Sbjct: 106 ELRSHADGSIVIMLIGNKGDLVDQRGVQTEDAVEF---AEDQGLFFSETSAFSGENVNSA 162
Query: 699 FLEMGERMLKIGHKMEKKGLNVN 767
FL++ + + K+ + K+ L N
Sbjct: 163 FLKLLQEINKV---VSKRSLECN 182
>gi|1176710|sp|P01123|YPT1_YEAST GTP-BINDING PROTEIN YPT1 (PROTEIN YP2) >gi|2144598|pir||TVBYQ2
GTP-binding protein YPT1 - yeast (Saccharomyces
cerevisiae) >gi|836716|dbj|BAA09201| (D50617)
GTP-binding protein YPT1 [Saccharomyces cerevisiae]
>gi|871935|dbj|BAA08026| (D44598) GTP-BINDING PROTEIN
YPT1(YP2) [Saccharomyces cerevisiae]
>gi|1589358|prf||2210408C GTP-binding protein
[Saccharomyces cerevisiae]
Length = 206
Score = 94.4 bits (231), Expect = 8e-19
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G + + + ++ K + ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR ++GI +V+ + D SF+ + W + I + + L+GNK DL D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 600 ---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVNR 770
+ + K F A + F TSAL + N++ FL M +I M ++ LN
Sbjct: 129 RVVEYDVAKEF---ADANKMPFLETSALDSTNVEDAFLTMAR---QIKESMSQQNLNETT 182
Query: 771 RKR 779
+K+
Sbjct: 183 QKK 185
>gi|4293|emb|CAA25036| (X00209) coding sequence YP2 gene [Saccharomyces cerevisiae]
>gi|223830|prf||1001201A protein YP2 [Saccharomyces
cerevisiae]
Length = 206
Score = 94.4 bits (231), Expect = 8e-19
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G + + + ++ K + ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR ++GI +V+ + D SF+ + W + I + + L+GNK DL D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 600 ---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVNR 770
+ + K F A + F TSAL + N++ FL M +I M ++ LN
Sbjct: 129 RVVEYDVAKEF---ADANKMPFLETSALDSTNVEDAFLTMAR---QIKQSMSQQNLNETT 182
Query: 771 RKR 779
+K+
Sbjct: 183 QKK 185
>gi|141302|sp|P11620|YPT1_SCHPO YPT1-RELATED PROTEIN 1 >gi|82804|pir||S10025 GTP-binding protein
ypt1 - fission yeast (Schizosaccharomyces pombe)
>gi|5148|emb|CAA36319| (X52099) ypt1
[Schizosaccharomyces pombe]
Length = 203
Score = 94.0 bits (230), Expect = 1e-18
Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR A+GI +V+ + D SF+ + +W + I + L+GNK D++D
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 600 ---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
+ + K F A ++N+ F TSA + N+++ FL M ++
Sbjct: 129 KVVEYSVAKEF---ADSLNIPFLETSAKDSTNVEQAFLTMSRQI 169
>gi|2338554 (AF013572) small GTP-binding protein [Bombyx mori]
Length = 202
Score = 94.0 bits (230), Expect = 1e-18
Identities = 49/155 (31%), Positives = 84/155 (53%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +NG+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-LD 599
RF +IT +YYR A+GI +V+ D SF + +W E I +++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTK 128
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ D + A + + F TSA + N+++ F+ M
Sbjct: 129 KVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTM 165
>gi|131785|sp|P22125|RAB1_DISOM RAS-RELATED PROTEIN ORAB-1 >gi|213123 (M38393) GTP-binding protein
[Discopyge ommata]
Length = 202
Score = 94.0 bits (230), Expect = 1e-18
Identities = 51/161 (31%), Positives = 88/161 (53%), Gaps = 5/161 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL--- 593
RF +IT +YYR A+GI +V+ + D SF+ + +W + I ++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 128
Query: 594 -LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D K F A ++ + F TSA N+++ F+ M + K
Sbjct: 129 KVVDYTTAKEF---ADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 171
>gi|82803|pir||S04590 GTP-binding protein ypt1 - fission yeast (Schizosaccharomyces
pombe) >gi|5146|emb|CAA33192| (X15082) YPT1-related
protein [Schizosaccharomyces pombe]
Length = 206
Score = 94.0 bits (230), Expect = 1e-18
Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + G+++KLQIWDTAGQE
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 71
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR A+GI +V+ + D SF+ + +W + I + L+GNK D++D
Sbjct: 72 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDK 131
Query: 600 ---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
+ + K F A ++N+ F TSA + N+++ FL M ++
Sbjct: 132 KVVEYSVAKEF---ADSLNIPFLETSAKDSTNVEQAFLTMSRQI 172
>gi|131786|sp|P11476|RB1A_HUMAN RAS-RELATED PROTEIN RAB-1A (YPT1-RELATED PROTEIN)
>gi|68968|pir||TVMSYP GTP-binding protein ypt1 - mouse
>gi|2144599|pir||TVHUYP GTP-binding protein Rab1 - human
>gi|2144600|pir||TVDGYP GTP-binding protein Rab1 - dog
>gi|55457|emb|CAA68284| (Y00094) Ypt1 protein (AA 1-205)
[Mus musculus] >gi|550060 (M28209) GTP-binding protein
[Homo sapiens] >gi|763158|emb|CAA33760| (X15744)
GTP-binding protein [Mus musculus]
Length = 205
Score = 93.6 bits (229), Expect = 1e-18
Identities = 51/161 (31%), Positives = 88/161 (53%), Gaps = 5/161 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL--- 593
RF +IT +YYR A+GI +V+ + D SF+ + +W + I ++ L+GNK DL
Sbjct: 72 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131
Query: 594 -LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D K F A ++ + F TSA N+++ F+ M + K
Sbjct: 132 KVVDYTTAKEF---ADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 174
>gi|1370162|emb|CAA66447| (X97853) RAB1A [Lotus japonicus]
Length = 201
Score = 93.2 bits (228), Expect = 2e-18
Identities = 48/161 (29%), Positives = 89/161 (54%), Gaps = 2/161 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + + G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + + SF+ + +W I + + L+GNK DL+++
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVEN 128
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D + + A + + F TSA + N+++ FL M + K
Sbjct: 129 KVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKK 171
>gi|1016750 (U35432) rab-related GTP-binding protein [Schistosoma mansoni]
Length = 205
Score = 93.2 bits (228), Expect = 2e-18
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKIL++G+ + + + ++ K I + G+ +KLQIWDTAGQE
Sbjct: 10 FKILLIGDSGVGKTCLLVRYVEESFVPTFISTIGIDFKIKTIELEGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RFH+IT +YYR A GI L++ + ++FD + W + N++ LI NK D+
Sbjct: 70 RFHTITSSYYRGAMGIMLIYDITSRQTFDNVQTWMNRTFSLASNEVEKLLIANKCDMAH- 128
Query: 603 MNDIKRFE---TKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
N + +E KA + F TSA + N+ K F E+ +L
Sbjct: 129 -NRVVSYEEGRQKAEEYGIGFLETSAKSSTNVHKAFEELTRAIL 171
>gi|464530|sp|P34141|RABA_DICDI RAS-RELATED PROTEIN RABA >gi|304602 (L21011) RabA [Dictyostelium
discoideum] >gi|739976|prf||2004272C rabA gene
[Dictyostelium discoideum]
Length = 199
Score = 80.8 bits (196), Expect = 2e-18
Identities = 41/121 (33%), Positives = 71/121 (57%), Gaps = 1/121 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + I G+++KLQIWDTAGQERF + YR + + +V+ + D RSF+ + KW
Sbjct: 42 DFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWI 101
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDD-MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ I +++ +IGNK D++ + D + A ++++ F TSA Q NI+ F+
Sbjct: 102 QEIERYARHNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFI 161
Query: 705 EM 710
+
Sbjct: 162 SL 163
Score = 32.8 bits (73), Expect = 2e-18
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
VGK+SIL RF DTFT S I+T+ F + Y
Sbjct: 17 VGKSSILLRFTEDTFTESYISTIGVDFKIKTVY 49
>gi|1370144|emb|CAA98178| (Z73950) RAB11B [Lotus japonicus]
Length = 242
Score = 92.8 bits (227), Expect = 2e-18
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + IN + +K QIWDTAGQER+ ++T YYR A G LV+ + +SFD + +W E
Sbjct: 64 FQTRTVTINAKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVE 123
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK-ATNMNLRFFPTSALQNKNIDKIFLE 707
+ A + I I LIGNK DL+D + + A L F TSAL +N++ FL+
Sbjct: 124 ELRAHADSSIVIMLIGNKGDLVDQRVVLSEDAVEFAEEQGLFFSETSALTGENVESAFLK 183
Query: 708 M 710
+
Sbjct: 184 L 184
>gi|303748|dbj|BAA02115| (D12547) GTP-binding protein [Pisum sativum]
>gi|738939|prf||2001457G GTP-binding protein [Pisum
sativum]
Length = 201
Score = 92.8 bits (227), Expect = 2e-18
Identities = 51/161 (31%), Positives = 88/161 (53%), Gaps = 4/161 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G+ + + + ++ + + + G+++KLQIWDTAGQE
Sbjct: 9 FKLLIIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W I + + L+GNK DL +
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLHEIDRYANDSVCKLLVGNKCDLTE- 127
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
N + + +T A + + F TSA + N+++ FL M + K
Sbjct: 128 -NKVVQTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKK 171
>gi|92339|pir||S06147 GTP-binding protein rab1B - rat >gi|226486|prf||1515250A rab1B
protein [Rattus norvegicus]
Length = 201
Score = 92.8 bits (227), Expect = 2e-18
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 5/161 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL--- 593
RF ++T +YYR A+GI +V+ + D SF+ + +W + I ++ L+GNK DL
Sbjct: 69 RFRTVTSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128
Query: 594 -LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D K F A ++ + F TSA N+++ F+ M + K
Sbjct: 129 KVVDNTTAKEF---ADSLGVPFLETSAKNATNVEQAFMTMAAEIKK 171
>gi|1173333|sp|P41924|RYL1_YARLI RAS-LIKE GTP-BINDING PROTEIN RYL1 >gi|173257 (L06969) ras-like
protein [Yarrowia lipolytica] >gi|1097101|prf||2113252A
Rab protein [Yarrowia lipolytica]
Length = 203
Score = 92.8 bits (227), Expect = 2e-18
Identities = 47/145 (32%), Positives = 83/145 (56%), Gaps = 6/145 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I I + +KLQ+WDTAGQERF +IT YYR A GI LV+ + D++SF+ I+ WY
Sbjct: 47 DFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWY 106
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDD-MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ + + + + L+GNK DL + + ++ + A + F S+ N N+++ F
Sbjct: 107 QNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFY 166
Query: 705 EMGERMLKI-----GHKMEKKGLNVNRRKRN 782
+ R+ G++ G+N+ + N
Sbjct: 167 SVATRIRDTVAKTKGNESGSGGINIAEGEEN 197
>gi|1053065 (U38465) small GTP-binding protein [Solanum lycopersicum]
Length = 202
Score = 92.8 bits (227), Expect = 2e-18
Identities = 51/165 (30%), Positives = 93/165 (55%), Gaps = 3/165 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + + SF+ + +W I + L+GNK DL+++
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANESVCKLLVGNKCDLVEN 128
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM-GERMLKIGHK 740
+ D + + A + + F TSA + N+++ FL M GE K+G++
Sbjct: 129 KVVDTQMGKALADELGIPFLETSAKDSINVEQAFLTMAGEIKKKMGNQ 176
>gi|3341681 (AC003672) small GTP-binding protein [Arabidopsis thaliana]
>gi|741994|prf||2008312A GTP-binding protein
[Arabidopsis thaliana]
Length = 208
Score = 86.6 bits (211), Expect = 3e-18
Identities = 43/118 (36%), Positives = 71/118 (59%), Gaps = 1/118 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + + +++LQ+WDTAGQERF S+ +Y R+++ +V+ + +SF KW
Sbjct: 45 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWI 104
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ + E G+D+ + L+GNK DL+D I+ E KA +N+ F TSA NI +F
Sbjct: 105 DEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALF 163
Score = 26.6 bits (57), Expect = 3e-18
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
+VGKTSI+ RF+ D F + T+ F + Y
Sbjct: 19 SVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY 52
>gi|1195465 (U24677) ras-related protein RAB-4 [Trypanosoma brucei rhodesiense]
Length = 198
Score = 87.0 bits (212), Expect = 3e-18
Identities = 46/128 (35%), Positives = 74/128 (56%), Gaps = 4/128 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ SK I ++G +KLQIWDTAGQER+ S+T++YYR A G +V+ + + S++ + +W
Sbjct: 45 FGSKIIELSGRRIKLQIWDTAGQERYKSVTRSYYRGAVGCLIVYDITERTSYESVPQWLN 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDM----NDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ G D+ + LIGNK D+ + N+ F A L F TSA + +
Sbjct: 105 DVRQLAGPDVVVMLIGNKSDMSKNRAVQHNEASLF---ALENKLLHFETSASTGEFVTDA 161
Query: 699 FLEMGERMLKIG 734
FL++ + L +G
Sbjct: 162 FLKVAKTGLSLG 173
Score = 26.2 bits (56), Expect = 3e-18
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 278 GKTSILQRFISDTFTYSIINTV 343
GK+S+L RF+ DTF+ T+
Sbjct: 20 GKSSLLHRFVEDTFSEERAQTI 41
>gi|541948|pir||S39565 rab1 protein - Soybean >gi|414832 (L14929) Rab7p [Glycine max]
Length = 201
Score = 92.4 bits (226), Expect = 3e-18
Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + + G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + + SF+ + +W I + + L+GNK DL+D+
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDLVDN 128
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D + A + + F TSA + N+++ FL M + K
Sbjct: 129 KVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKK 171
>gi|2133238|pir||S51495 small GTP-binding protein RYL1 - yeast (Yarrowia lipolytica)
Length = 203
Score = 92.4 bits (226), Expect = 3e-18
Identities = 47/145 (32%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I I + +KLQ+WDTAGQERF +IT YYR A GI LV+ + D++SF+ I+ WY
Sbjct: 47 DFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWY 106
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDD-MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ + + + L+GNK DL + + ++ + A + F S+ N N+++ F
Sbjct: 107 QNVQTYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFY 166
Query: 705 EMGERMLKI-----GHKMEKKGLNVNRRKRN 782
+ R+ G++ G+N+ + N
Sbjct: 167 SVATRIRDTVAKTKGNESGSGGINIAEGEEN 197
>gi|464524|sp|Q05974|RAB1_LYMST RAS-RELATED PROTEIN RAB-1A >gi|345404|pir||S32206 RAB1 protein -
great pond snail >gi|481217|pir||S38339 rab1 protein -
great pond snail >gi|288934|emb|CAA51233| (X72688) RAB1
[Lymnaea stagnalis]
Length = 205
Score = 92.4 bits (226), Expect = 3e-18
Identities = 48/155 (30%), Positives = 84/155 (53%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-LD 599
RF +IT +YYR A+GI +V+ + D SF+ + +W + I ++ L+GNK DL
Sbjct: 72 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTK 131
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ D + A + + F TSA N+++ F+ M
Sbjct: 132 KVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTM 168
>gi|3881017|emb|CAA21489| (AL032621) similar to Ras family [Caenorhabditis elegans]
Length = 216
Score = 92.4 bits (226), Expect = 3e-18
Identities = 47/125 (37%), Positives = 75/125 (59%), Gaps = 2/125 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + + + +KLQIWDTAGQERF SIT++YYR+A+ I LV+ + SFDC+ +W
Sbjct: 43 DFMIKTVKVGNDKIKLQIWDTAGQERFRSITQSYYRSAHAIVLVYDVSCQPSFDCLPEWL 102
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNL--RFFPTSALQNKNIDKIF 701
I + + L+GNK D D+ +R +++N F TSAL N+D++F
Sbjct: 103 GEIESYANRRVLKILVGNKVDKGDEREVPERIGRDFSDVNQFDYFLETSALDATNVDQLF 162
Query: 702 LEMGERM 722
++ R+
Sbjct: 163 EQVATRL 169
>gi|464531|sp|P34142|RABB_DICDI RAS-RELATED PROTEIN RABB >gi|304604 (L21012) RabB [Dictyostelium
discoideum] >gi|739977|prf||2004272D rabB gene
[Dictyostelium discoideum]
Length = 213
Score = 92.4 bits (226), Expect = 3e-18
Identities = 53/163 (32%), Positives = 87/163 (52%), Gaps = 2/163 (1%)
Query: 237 QERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTA 413
++ FK+++LGE + + + F + K I I G+ + L IWDTA
Sbjct: 5 EKSFKVVLLGEGCVGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTA 64
Query: 414 GQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL 593
GQERFH++ YYR + G +V+ + D+ SF W + + +GNDI + +IGNK DL
Sbjct: 65 GQERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDL 124
Query: 594 -LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+ + E A ++ + TSA NK I+++FL++ RM+
Sbjct: 125 EKTRVIPLADAEAYAKSVGAIHYSTSAKLNKGIEELFLDLTRRMI 169
>gi|2500076|sp|Q01890|YPT1_PHYIN RAS-LIKE GTP-BINDING PROTEIN YPT1 >gi|940432 (U30474) ras related
protein PiYpt1 [Phytophthora infestans]
Length = 201
Score = 92.1 bits (225), Expect = 4e-18
Identities = 51/161 (31%), Positives = 88/161 (53%), Gaps = 5/161 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL--- 593
RF +IT +YYR A+GI +V+ + D SF+ + +W I ++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAK 128
Query: 594 -LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ + K F A ++ + F TSA N++K F+ M ++ K
Sbjct: 129 RVVSTDAAKEF---AESLGIEFLETSAKNAANVEKAFMMMAAQIKK 171
>gi|541978|pir||S41430 guanine nucleotide regulatory protein - fava bean
>gi|303734|dbj|BAA02118| (D12550) GTP-binding protein
[Pisum sativum] >gi|452359|emb|CAA82707| (Z29590)
guanine nucleotide regulatory protein [Vicia faba]
>gi|738942|prf||2001457K GTP-binding protein [Pisum
sativum] >gi|1098293|prf||2115367A small GTP-binding
protein [Vicia faba]
Length = 202
Score = 92.1 bits (225), Expect = 4e-18
Identities = 49/155 (31%), Positives = 87/155 (55%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL +
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTE- 127
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N +ET A + + F TSA + N+++ F+ M
Sbjct: 128 -NRAVPYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165
>gi|1370166|emb|CAA98160| (Z73932) RAB1C [Lotus japonicus]
Length = 202
Score = 92.1 bits (225), Expect = 4e-18
Identities = 52/172 (30%), Positives = 93/172 (53%), Gaps = 4/172 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W I ++ L+GNK DL +
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTE- 127
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLN 761
N + +ET A + + F TSA N+++ F+ M +I ++M + +N
Sbjct: 128 -NKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMA---AEIKNRMASQPVN 179
>gi|464561|sp|P35289|RB15_RAT RAS-RELATED PROTEIN RAB-15 >gi|420273|pir||F42148 GTP-binding
protein rab15 - rat >gi|206537 (M83679) RAB15 [Rattus
norvegicus]
Length = 212
Score = 92.1 bits (225), Expect = 4e-18
Identities = 52/137 (37%), Positives = 78/137 (55%), Gaps = 2/137 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K I ++G +++QIWDTAGQER+ +ITK YYR A GIFLV+ + +RS+ I KW
Sbjct: 44 DFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWV 103
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ + LIGNK D + + R + + A + F+ TSA N NI + F
Sbjct: 104 SDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF 162
Query: 702 LEMGERMLKIGHKMEKKGL 758
+ E +L+ H+ E GL
Sbjct: 163 TRLTELVLQ-AHRKELDGL 180
>gi|2731374 (U80033) No definition line found [Caenorhabditis elegans]
Length = 216
Score = 92.1 bits (225), Expect = 4e-18
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + + ++ K I + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD 599
RFH+IT +YYR A GI LV+ + + +SFD I KW I D+ ++GNK D+ D
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMILGNKCDMSD 128
>gi|549795|sp|P36017|YP51_YEAST GTP-BINDING PROTEIN YPT51/VPS21 >gi|626166|pir||S43399 GTP-binding
protein VPS21 - yeast (Saccharomyces cerevisiae)
>gi|441477|emb|CAA82543| (Z29338) VPS21 product
[Saccharomyces cerevisiae] >gi|483567|emb|CAA53769|
(X76173) ypt51p [Saccharomyces cerevisiae]
>gi|1164935|emb|CAA64010| (X94335) YOR3154c
[Saccharomyces cerevisiae] >gi|1420257|emb|CAA99285|
(Z74997) ORF YOR089c [Saccharomyces cerevisiae]
Length = 210
Score = 88.9 bits (217), Expect = 4e-18
Identities = 46/124 (37%), Positives = 72/124 (57%), Gaps = 4/124 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + IN ++K +IWDTAGQERF S+ YYRNA +V+ + +SF W +
Sbjct: 44 FLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVK 103
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIK----RFETKATNMNLRFFPTSALQNKNIDKI 698
+ + DI I L+GNK D+L + + K E A L FF TSA +N++ +
Sbjct: 104 ELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 163
Query: 699 FLEMGERM 722
FL +GE++
Sbjct: 164 FLGIGEKI 171
Score = 23.5 bits (49), Expect = 4e-18
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLF 355
VGK+SI+ RF+S+ F + T+ F
Sbjct: 18 VGKSSIVLRFVSNDFAENKEPTIGAAF 44
>gi|623586 (L29273) putative [Nicotiana tabacum]
Length = 208
Score = 85.8 bits (209), Expect = 4e-18
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + + ++ LQ+WDTAGQERF S+ +Y R+++ +V+ + +SF KW
Sbjct: 45 DFLSKTMYLEDRTVALQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWI 104
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
E + E G+D+ I L+GNK DL++ I+ E KA +N+ F TSA NI +F
Sbjct: 105 EEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEAEAKARELNVMFIETSAKAGFNIKPLF 163
Score = 26.6 bits (57), Expect = 4e-18
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
+VGKTSI+ RF+ D F + T+ F + Y
Sbjct: 19 SVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY 52
>gi|2313047|dbj|BAA21712| (D84348) rab-related protein 3 [Drosophila melanogaster]
Length = 219
Score = 91.7 bits (224), Expect = 5e-18
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++S K I + G+ +KLQIWDTAGQERF +IT++YYR+ANG+ +V+ + SF + KW
Sbjct: 57 DFSMKTIAVEGKQIKLQIWDTAGQERFRTITQSYYRSANGVLIVYDITKRSSFSNLQKWI 116
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFP-------TSALQNKN 686
E + +++ I L+GNK DL + + + + ++ P TSA +N N
Sbjct: 117 EEVRRYTASNVLIILVGNKCDL----EEQREVDFEEARQMCQYIPEILFVMETSAKENMN 172
Query: 687 IDKIF 701
++ F
Sbjct: 173 VEDAF 177
>gi|303750|dbj|BAA02116| (D12548) GTP-binding protein [Pisum sativum]
>gi|738940|prf||2001457H GTP-binding protein [Pisum
sativum]
Length = 202
Score = 91.7 bits (224), Expect = 5e-18
Identities = 50/155 (32%), Positives = 84/155 (53%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W I ++ L+GNK DL D
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLAD- 127
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N + ET A + + F TSA N+++ F+ M
Sbjct: 128 -NKVVSSETAKAFADEIGIPFMETSAKNANNVEQAFMAM 165
>gi|421941|pir||S33160 GTP-binding protein, ras-related - common tobacco
>gi|296878|emb|CAA50609| (X71609) ras-related
GTP-binding protein [Nicotiana tabacum]
Length = 200
Score = 89.7 bits (219), Expect = 6e-18
Identities = 47/136 (34%), Positives = 74/136 (53%), Gaps = 1/136 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ + +N ++K +IWDTAGQER+HS+ YYR A +VF + + SFD KW +
Sbjct: 47 FFSQTVAVNDATVKFEIWDTAGQERYHSLPPMYYRGAAAAIIVFDITNQASFDRAKKWVQ 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ A+ ++ + L GNK DLLD + +T A L F TSA N++ IF E
Sbjct: 107 ELQAQGNPNMVMALAGNKADLLDARKVAAEEAQTYAQENGLFFMETSAKTASNVNDIFYE 166
Query: 708 MGERMLKIGHKMEKKGL 758
+ R+ ++ G+
Sbjct: 167 IANRLPRLQPAQNPSGM 183
Score = 22.3 bits (46), Expect = 6e-18
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 278 GKTSILQRFISDTFTYSIINTVDKLFFQR 364
GK+S+L RF+ F +T+ FF +
Sbjct: 22 GKSSLLLRFVKGQFIEFQESTIGAAFFSQ 50
>gi|3806150 (AF101310) similar to RAS-related proteins; contains similarity to
ADP-ribosylation factors [Caenorhabditis elegans]
Length = 205
Score = 91.3 bits (223), Expect = 7e-18
Identities = 51/167 (30%), Positives = 91/167 (53%), Gaps = 5/167 (2%)
Query: 222 MAAIKQER---FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESL 389
MAA+ E FK+L++G+ + + + ++ + I ++G+++
Sbjct: 1 MAAMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
Query: 390 KLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIF 569
KLQIWDTAGQERF +IT +YYR A+GI +V+ + D +F+ + +W + I ++
Sbjct: 61 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEIDRYACENVNKL 120
Query: 570 LIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
L+GNK DL + + + A + + F TSA + N+++ FL M +
Sbjct: 121 LVGNKCDLTAKRAVETQAAQDYAGQLGIPFLETSAKSSTNVEQAFLTMASEI 172
>gi|1381678 (U58854) small GTP-binding protein [Glycine max]
Length = 202
Score = 91.3 bits (223), Expect = 7e-18
Identities = 49/155 (31%), Positives = 86/155 (54%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL +
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL--E 126
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N +ET A + + F TSA N+++ F+ M
Sbjct: 127 ANRAVSYETAKAFADGIGIPFMETSAKDATNVEQAFMAM 165
>gi|3024505|sp|Q40522|R11D_TOBAC RAS-RELATED PROTEIN RAB11D >gi|623580 (L29270) putative [Nicotiana
tabacum]
Length = 222
Score = 91.3 bits (223), Expect = 7e-18
Identities = 54/144 (37%), Positives = 81/144 (55%), Gaps = 4/144 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I +S+K QIWDTAGQER+ ++T YYR A G LV+ + ++FD I +W E
Sbjct: 52 FQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLE 111
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ A +I I LIGNK DL D D K F K L F TSA++ N++
Sbjct: 112 ELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKE---GLFFLETSAMEATNLEDA 168
Query: 699 FLEMGERMLKIGHKMEKKGLNVNRRKRN 782
FL + + +I + + KK L + + N
Sbjct: 169 FLTV---LTEIFNIVNKKNLAADDNQSN 193
>gi|730510|sp|P40392|RIC1_ORYSA RAS-RELATED PROTEIN RIC1 >gi|542150|pir||S38740 GTP-binding protein
- rice >gi|432607|gb|AAB28535| (S66160) ras-related GTP
binding protein possessing GTPase activity=ric1 [Oryza
sativa=rice, var. Yamahoushi, callus, Peptide, 202 aa]
[Oryza sativa]
Length = 202
Score = 90.9 bits (222), Expect = 9e-18
Identities = 52/170 (30%), Positives = 91/170 (52%), Gaps = 4/170 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W I ++ L+GNK DL +
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAE- 127
Query: 603 MNDIKRFE---TKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKG 755
N + +E A + + F TSA N++K F+ M +I ++M +G
Sbjct: 128 -NRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAG---EIKNRMASQG 177
>gi|1575675 (U70366) rab6 [Plasmodium falciparum]
Length = 240
Score = 81.5 bits (198), Expect = 1e-17
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + ++ ++LQ+WDTAGQERF S+ +Y R++ +V+ + + +SF+ KW
Sbjct: 80 DFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWI 139
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFE--TKATNMNLRFFPTSALQNKNIDKIF 701
+ I+ E G D+ I L+GNK D L D+ + E KA N F TSA NI +F
Sbjct: 140 QDILNERGKDVIIALVGNKTD-LGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLF 198
Query: 702 LEMGERM 722
++ ++
Sbjct: 199 KKIASKL 205
Score = 29.7 bits (65), Expect = 1e-17
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
VGKTSI+ RF+ DTF + +T+ F + Y
Sbjct: 55 VGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLY 87
>gi|400976|sp|P31582|RHA1_ARATH RAS-RELATED PROTEIN RHA1 >gi|478671|pir||S23727 GTP-binding protein
RHA1 - Arabidopsis thaliana >gi|16484|emb|CAA41863|
(X59152) RHA1 [Arabidopsis thaliana]
>gi|397594|emb|CAA80534| (Z22958) GTP-binding protein
[Arabidopsis thaliana]
Length = 200
Score = 87.0 bits (212), Expect = 1e-17
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ + +N ++K +IWDTAGQER+HS+ YYR A +VF + + SF+ KW +
Sbjct: 47 FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQ 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ A+ ++ + L GNK DLLD + E A +L F TSA N+ IF E
Sbjct: 107 ELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYE 166
Query: 708 MGERMLKI 731
+ +R+ ++
Sbjct: 167 IAKRLPRV 174
Score = 24.3 bits (51), Expect = 1e-17
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 278 GKTSILQRFISDTFTYSIINTVDKLFFQR 364
GK+S++ RF+ D F +T+ FF +
Sbjct: 22 GKSSLVLRFVKDQFVEFQESTIGAAFFSQ 50
>gi|2853090|emb|CAA16940| (AL021768) small GTP-binding protein - like [Arabidopsis thaliana]
Length = 200
Score = 87.0 bits (212), Expect = 1e-17
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ + +N ++K +IWDTAGQER+HS+ YYR A +VF + + SF+ KW +
Sbjct: 47 FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQ 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ A+ ++ + L GNK DLLD + +T A L F TSA N+ +IF E
Sbjct: 107 ELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 166
Query: 708 MGERMLKI 731
+ R+ ++
Sbjct: 167 IARRLPRV 174
Score = 24.3 bits (51), Expect = 1e-17
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 278 GKTSILQRFISDTFTYSIINTVDKLFFQR 364
GK+S++ RF+ D F +T+ FF +
Sbjct: 22 GKSSLVLRFVKDQFVEFQESTIGAAFFSQ 50
>gi|81634|pir||PS0279 GTP-binding protein ara-5 - Arabidopsis thaliana (fragment)
Length = 196
Score = 90.5 bits (221), Expect = 1e-17
Identities = 49/155 (31%), Positives = 86/155 (54%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 2 FKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 61
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL +
Sbjct: 62 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTE- 120
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N +ET A + + F TSA N+++ F+ M
Sbjct: 121 -NRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAM 158
>gi|131803|sp|P10536|RB1B_RAT RAS-RELATED PROTEIN RAB-1B >gi|57006|emb|CAA32105| (X13905) rab1B
protein (AA 1 - 201) [Rattus sp.]
Length = 201
Score = 90.5 bits (221), Expect = 1e-17
Identities = 49/161 (30%), Positives = 87/161 (53%), Gaps = 5/161 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL--- 593
RF ++T +YYR A+GI +V+ + D S+ + +W + I ++ L+GNK DL
Sbjct: 69 RFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128
Query: 594 -LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ D K F A ++ + F TSA N+++ F+ M + K
Sbjct: 129 KVVDNTTAKEF---ADSLGVPFLETSAKNATNVEQAFMTMAAEIKK 171
>gi|114093|sp|P28188|ARA5_ARATH RAS-RELATED PROTEIN ARA-5 >gi|217841|dbj|BAA00832| (D01027) small
GTP-binding protein [Arabidopsis thaliana]
Length = 195
Score = 90.5 bits (221), Expect = 1e-17
Identities = 49/155 (31%), Positives = 86/155 (54%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 1 FKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 60
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL +
Sbjct: 61 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTE- 119
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N +ET A + + F TSA N+++ F+ M
Sbjct: 120 -NRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAM 157
>gi|392973 (U00986) Rab3 [Aplysia californica]
Length = 219
Score = 90.5 bits (221), Expect = 1e-17
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + +KLQIWDTAGQE
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQDKRVKLQIWDTAGQE 81
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK DL D+
Sbjct: 82 RYPTITTAYYRGAMGFLLMYDITNEESFNAVQDWCTQIKTYSWDNAQVVLVGNKCDLEDE 141
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ +R + A + L FF TSA +N N+ +F ER++ I
Sbjct: 142 RVVSTERGKQLADQLGLEFFETSAKENINVKAVF----ERLVDI 181
>gi|303738|dbj|BAA02110| (D12542) GTP-binding protein [Pisum sativum]
>gi|738935|prf||2001457C GTP-binding protein [Pisum
sativum]
Length = 225
Score = 90.5 bits (221), Expect = 1e-17
Identities = 51/144 (35%), Positives = 84/144 (57%), Gaps = 2/144 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ +VI+ +++K QIWDTAGQER+ ++T YYR A G LV+ + ++FD I +W E
Sbjct: 54 FQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLE 113
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +I I L+GNK D L++ D+ + K A L F TSALQ N++ F+
Sbjct: 114 ELRNHADKNIVIILVGNKSD-LENQRDVPTEDAKEFAEKEGLFFLETSALQATNVEASFM 172
Query: 705 EMGERMLKIGHKMEKKGLNVNRRKRN 782
+ + +I + + KK L + + N
Sbjct: 173 TV---LTEIYNILNKKNLAADESQGN 195
>gi|2317906 (U89959) ARA-5 [Arabidopsis thaliana]
Length = 258
Score = 90.5 bits (221), Expect = 1e-17
Identities = 49/155 (31%), Positives = 86/155 (54%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 64 FKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 123
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL +
Sbjct: 124 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTE- 182
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N +ET A + + F TSA N+++ F+ M
Sbjct: 183 -NRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAM 220
>gi|2313033|dbj|BAA21705| (D84312) rab1 [Drosophila melanogaster]
Length = 205
Score = 90.5 bits (221), Expect = 1e-17
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-LD 599
RF +IT +YYR A+GI +V+ D SF+ + +W E I ++ L+GNK DL
Sbjct: 72 RFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTK 131
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ D A + + F TSA N+++ F+ M
Sbjct: 132 KVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTM 168
>gi|3025293|sp|Q39572|YPT6_CHLRE RAS-RELATED PROTEIN YPTC6 >gi|1363476|pir||JC4108 membrane vesicle
transport protein ypt C6 - Chlamydomonas reinhardtii
>gi|806728 (U13169) YptC6 [Chlamydomonas reinhardtii]
Length = 216
Score = 90.5 bits (221), Expect = 1e-17
Identities = 48/137 (35%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++G+++K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +++W +
Sbjct: 49 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLK 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKA--TNMNLRFFPTSALQNKNIDKIFL 704
+ ++I I L+GNK D L + D++ +A L F TSAL++ N++K F
Sbjct: 109 ELRDHADSNIVIMLVGNKSD-LKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQ 167
Query: 705 EMGERMLKIGHKMEKKGLN 761
++ + +I H + KK L+
Sbjct: 168 QI---LTEIYHIVSKKVLD 183
>gi|2708641 (AF037357) GTPase rab11b [Dictyostelium discoideum]
Length = 220
Score = 90.5 bits (221), Expect = 1e-17
Identities = 48/144 (33%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+S+K + I+ + +KLQ+WDTAGQE+++SIT++YY+ A G +V+++ D SF+ ++KW +
Sbjct: 48 FSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
D I L+GNK D L + ++ E K A ++F TSAL + N++ F
Sbjct: 108 KFRENAHQDYGIMLVGNKSD-LKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFN 166
Query: 705 EMGERMLKIGHKMEKKGLNVNRRKRN 782
+ + K + L++N N
Sbjct: 167 NLFNFIYYSLFKNKTMTLDINNNGNN 192
>gi|466172|sp|Q05737|YPT2_MAIZE GTP-BINDING PROTEIN YPTM2 >gi|283056|pir||B38202 ypt family - maize
>gi|287835|emb|CAA44919| (X63278) yptm2 [Zea mays]
Length = 203
Score = 90.1 bits (220), Expect = 2e-17
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W I +++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDL--T 126
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N + ET A M + F TSA N+ + F+ M
Sbjct: 127 ANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAM 165
>gi|1628428|emb|CAA63555| (X92977) GTPase [Plasmodium falciparum]
Length = 207
Score = 80.8 bits (196), Expect = 2e-17
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + ++ ++LQ+WDTAGQERF S+ +Y R++ +V+ + + +SF+ KW
Sbjct: 47 DFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWI 106
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFE--TKATNMNLRFFPTSALQNKNIDKIF 701
+ I+ E G D+ I L+GNK D L D+ + E KA N F TSA NI +F
Sbjct: 107 QDILNERGKDVIIALVGNKTD-LGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLF 165
Query: 702 LEMGERM 722
+ ++
Sbjct: 166 KKTASKL 172
Score = 29.7 bits (65), Expect = 2e-17
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
VGKTSI+ RF+ DTF + +T+ F + Y
Sbjct: 22 VGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLY 54
>gi|421942|pir||S34253 GTP-binding protein, ras-related - common tobacco
>gi|311907|emb|CAA51011| (X72212) ras-related
GTP-binding protein [Nicotiana tabacum]
Length = 203
Score = 89.7 bits (219), Expect = 2e-17
Identities = 49/155 (31%), Positives = 84/155 (53%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W I + + L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYASDGVNKILVGNKSDL--T 126
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N + +ET A + + F TSA N+++ F+ M
Sbjct: 127 ANRVVSYETAKAFADEIGIPFLETSAKDATNVEQAFMAM 165
>gi|466171|sp|P33723|YPT1_NEUCR GTP-BINDING PROTEIN YPT1 >gi|418815|pir||S30096 GTP-binding protein
ypt1 - Neurospora crassa >gi|262046|bbs|120769 (S51252)
NCYPT1=putative small GTP-binding protein [Neurospora
crassa, Peptide, 203 aa] [Neurospora crassa]
>gi|384298|prf||1905382A small GTP-binding protein
[Neurospora crassa]
Length = 203
Score = 89.7 bits (219), Expect = 2e-17
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR A+GI +V+ + D SF+ + +W + I + L+GNK D+ D
Sbjct: 69 RFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDK 128
Query: 600 ---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
+ K F A ++ + F TSA N+++ FL M ++
Sbjct: 129 KVVEYTVAKEF---ADSLGIPFLETSAKNASNVEQAFLTMARQI 169
>gi|401686|sp|P31584|YPT1_VOLCA GTP-BINDING PROTEIN YPTV1 >gi|99435|pir||JC1247 GTP-binding protein
yptV1 - Volvox carteri >gi|170661 (M93438) small G
protein [Volvox carteri]
Length = 203
Score = 89.7 bits (219), Expect = 2e-17
Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + ++G+ +KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLL-D 599
RF +IT +YYR A+GI +V+ + D SF+ + +W I ++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGK 128
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ D + + A + + F TSA N+++ F+ M
Sbjct: 129 KVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTM 165
>gi|1439642 (U64600) Similar to ras-related protein. [Caenorhabditis elegans]
Length = 191
Score = 89.7 bits (219), Expect = 2e-17
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K + ++G ++ LQ+WDTAGQERF S+ K+Y+R A+G LV+ + ++SF + W
Sbjct: 32 DFHVKTVNVDGRNVALQLWDTAGQERFRSLCKSYFRRADGAILVYDVCAEQSFLRVRDWI 91
Query: 528 EGIVAEVGNDIPIFLIGNKYDL-LDDMNDIKRFE--TKATNMNLRFFPTSALQNKNIDKI 698
E I IPI L+GNK D+ + + + + + A M + F TSAL NID
Sbjct: 92 ETIKESTERSIPIILVGNKVDMRISTPGSVAKTDGASMAAAMGVLFMETSALDGSNIDNA 151
Query: 699 FLEMGERMLKI 731
L + ++ +
Sbjct: 152 MLALTRELMAV 162
>gi|1845598 (L49400) Rab3 [Loligo pealei]
Length = 220
Score = 89.7 bits (219), Expect = 2e-17
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + +KLQIWDTAGQE
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQDKRVKLQIWDTAGQE 81
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK DL ++
Sbjct: 82 RYRTITTAYYRGAMGFILMYDVTNEESFNAVQDWCTQIKTYSWDNAQVVLVGNKCDLEEE 141
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ +R + A + L FF TSA +N N+ +F ER++ I
Sbjct: 142 RVVSTERGKQLADQLGLEFFETSAKENINVKAVF----ERLVDI 181
>gi|134131|sp|P17608|RYH1_SCHPO GTP-BINDING PROTEIN RYH1 >gi|101033|pir||S12789 GTP-binding protein
ryh1 - fission yeast (Schizosaccharomyces pombe)
>gi|5077|emb|CAA36715| (X52475) ryh1
[Schizosaccharomyces pombe] >gi|2330800|emb|CAB11173|
(Z98560) gtp binding protein [Schizosaccharomyces pombe]
Length = 201
Score = 84.3 bits (205), Expect = 2e-17
Identities = 42/125 (33%), Positives = 73/125 (57%), Gaps = 1/125 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + + +++LQ+WDTAGQERF S+ +Y R+++ +V+ + + SF +KW
Sbjct: 47 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWI 106
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
E + AE G+D+ I L+GNK DL D + E KA + + TSA N+ +F
Sbjct: 107 EDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFR 166
Query: 705 EMGERM 722
++ + +
Sbjct: 167 KIAQML 172
Score = 25.8 bits (55), Expect = 2e-17
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
+VGKTS++ RF+ D F + T+ F + Y
Sbjct: 21 SVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMY 54
>gi|303732|dbj|BAA02117| (D12549) GTP-binding protein [Pisum sativum]
>gi|738941|prf||2001457J GTP-binding protein [Pisum
sativum]
Length = 203
Score = 89.3 bits (218), Expect = 3e-17
Identities = 48/155 (30%), Positives = 85/155 (53%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL--T 126
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N + ++T A + + F TSA N++ F+ M
Sbjct: 127 ANRVVSYDTAKEFADQIGIPFMETSAKDATNVEGAFMAM 165
>gi|3024500|sp|Q40191|R11A_LOTJA RAS-RELATED PROTEIN RAB11A >gi|1370142|emb|CAA98177| (Z73949)
RAB11A [Lotus japonicus]
Length = 226
Score = 89.3 bits (218), Expect = 3e-17
Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ +VI+ +++K QIWDTAGQER+ ++T YYR A G LV+ + ++FD I +W E
Sbjct: 54 FQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLE 113
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN----DIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ +I I LIGNK DL++ + D K F K L F TSAL+ N++
Sbjct: 114 ELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKE---GLFFLETSALEATNVESA 170
Query: 699 FLEMGERMLKIGHKMEKKGLNVNRRKRN 782
F + + +I + + KK L + + N
Sbjct: 171 FTTV---LTEIYNIVNKKSLAADESQGN 195
>gi|3024503|sp|Q40520|R11C_TOBAC RAS-RELATED PROTEIN RAB11C >gi|623576 (L29268) putative [Nicotiana
tabacum]
Length = 222
Score = 89.3 bits (218), Expect = 3e-17
Identities = 53/144 (36%), Positives = 80/144 (54%), Gaps = 4/144 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ +VI +S+K QIWDTAGQER+ ++T YYR A G LV+ + ++FD I +W E
Sbjct: 52 FQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLE 111
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ A +I I L GNK DL D D K F K L F TSA++ ++
Sbjct: 112 ELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKE---GLFFLETSAMEATKLEDA 168
Query: 699 FLEMGERMLKIGHKMEKKGLNVNRRKRN 782
FL + + +I + + KK L + + N
Sbjct: 169 FLTV---LTEIFNIVNKKNLAADENQSN 193
>gi|1613773 (U41269) Rab1 [Plasmodium falciparum]
Length = 207
Score = 89.3 bits (218), Expect = 3e-17
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 2/177 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
+KI+++G+ + + + ++ + I ++ + +KLQIWDTAGQE
Sbjct: 13 YKIILIGDSGVGKSCILLRFSDDHFTESYITTIGVDFRFRTIKVDDKIVKLQIWDTAGQE 72
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT YYR A+GI +++ D SF I+ W I D L+GNK D DD
Sbjct: 73 RFRTITSAYYRGADGIIIIYDTTDRNSFLHINDWMNEINKYTNEDTCKLLVGNKADCKDD 132
Query: 603 MN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVNRRK 776
+ + KA +N+ F TS N++ F + + ++K K L N K
Sbjct: 133 IEITTMEGQNKAKELNISFIETSGKDATNVELAFTMITQELIKKKKKKNFTSLKNNHAK 191
>gi|2129606|pir||S71234 GTP-binding protein 3 - Arabidopsis thaliana
>gi|2129701|pir||S71586 Rab11 homolog GTP-binding
protein ATGB3 - Arabidopsis thaliana >gi|1184985
(U46926) ATGB3 [Arabidopsis thaliana]
Length = 224
Score = 89.3 bits (218), Expect = 3e-17
Identities = 54/136 (39%), Positives = 75/136 (54%), Gaps = 4/136 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I +S+K QIWDTAGQER+ ++T YYR A G LV+ M +F+ I +W E
Sbjct: 54 FQTRTLSIEQKSIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLE 113
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ A +I I LIGNK DL D D K F K L F TSAL N++
Sbjct: 114 ELRAHADKNIVIILIGNKSDLEDQRAVPTEDAKEFAEKE---GLFFLETSALNATNVENS 170
Query: 699 FLEMGERMLKIGHKMEKKGL 758
F + M +I + + KK L
Sbjct: 171 FNTL---MTQIYNTVNKKNL 187
>gi|4490750|emb|CAB38912| (AL035708) GTP-binding protein GB3 [Arabidopsis thaliana]
Length = 224
Score = 89.3 bits (218), Expect = 3e-17
Identities = 54/136 (39%), Positives = 75/136 (54%), Gaps = 4/136 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I +S+K QIWDTAGQER+ ++T YYR A G LV+ M +F+ I +W E
Sbjct: 54 FQTRTLSIEQKSIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLE 113
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ A +I I LIGNK DL D D K F K L F TSAL N++
Sbjct: 114 ELRAHADKNIVIILIGNKSDLEDQRAVPTEDAKEFAEKE---GLFFLETSALNATNVENS 170
Query: 699 FLEMGERMLKIGHKMEKKGL 758
F + M +I + + KK L
Sbjct: 171 FNTL---MTQIYNTVNKKNL 187
>gi|1381676 (U58853) small GTP-binding protein [Glycine max]
Length = 222
Score = 88.9 bits (217), Expect = 4e-17
Identities = 50/144 (34%), Positives = 83/144 (56%), Gaps = 2/144 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ +VI+ +++K QIWDTAGQER+ ++T YYR A G LV+ + ++FD I +W E
Sbjct: 50 FQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLE 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +I I L GNK D L++ D+ + K A L F TSAL+ N++ F+
Sbjct: 110 ELRNHADKNIVIILTGNKCD-LENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFI 168
Query: 705 EMGERMLKIGHKMEKKGLNVNRRKRN 782
+ + +I + + KK L + + N
Sbjct: 169 TV---LTEIYNIVNKKNLTADENQGN 191
>gi|129323|sp|P11023|RB3A_BOVIN RAS-RELATED PROTEIN RAB-3A (SMG P25A) >gi|162760 (M19885)
GTP-binding protein [Bos taurus]
Length = 220
Score = 88.9 bits (217), Expect = 4e-17
Identities = 50/152 (32%), Positives = 77/152 (49%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKILI+G + F F ++ K I N + +KLQIWDTAGQE
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D+
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSSDNAQVLLVGNKCDMEDE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +R A ++ FF SA N N+ + F
Sbjct: 143 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 176
>gi|131800|sp|P25228|RAB3_DROME RAS-RELATED PROTEIN RAB-3 >gi|84987|pir||JH0425 GTP-binding protein
rab3A homolog - fruit fly (Drosophila melanogaster)
>gi|158193 (M64621) rab3 [Drosophila melanogaster]
Length = 220
Score = 88.9 bits (217), Expect = 4e-17
Identities = 51/162 (31%), Positives = 83/162 (50%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + + +KLQIWDTAGQE
Sbjct: 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D
Sbjct: 82 RYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQ 141
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ +R A + + FF TSA +N N+ +F ER++ I
Sbjct: 142 RVISFERGRQLADQLGVEFFETSAKENVNVKAVF----ERLVDI 181
>gi|1946985 (AF000192) similar to RAS proteins;belongs to the YPT1 sub-family
[Caenorhabditis elegans]
Length = 196
Score = 88.5 bits (216), Expect = 5e-17
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
+Y +K I + + +KLQIWDTAGQERF S+T +YYR+A+ + LV+ + + SF+ W
Sbjct: 39 DYRNKLITMGDKKVKLQIWDTAGQERFRSVTTSYYRDADALLLVYDIANRASFENCRNWL 98
Query: 528 EGIVAEVGNDIPIFLIGNKYDL--LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
I + + L+GNK DL ++ KR A + F TSA N+D+ F
Sbjct: 99 SQIKEYGKEAVQVTLVGNKCDLPRAVPTDEGKRL---AEAYQIPFMETSAKTGFNVDRAF 155
Query: 702 LEMGERMLKI 731
L + ERMLK+
Sbjct: 156 LGLAERMLKL 165
>gi|89584|pir||C29224 GTP-binding protein smg-25C - bovine
Length = 227
Score = 88.5 bits (216), Expect = 5e-17
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + N + +KLQIWDTAGQE
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQE 90
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D+
Sbjct: 91 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 150
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ +R + + FF TSA N N+ + F ER++ I
Sbjct: 151 RVISTERGQHLGEQLGFEFFETSAKDNINVKQTF----ERLVDI 190
>gi|4539399|emb|CAB37465| (AL035526) ras-like GTP-binding protein [Arabidopsis thaliana]
Length = 214
Score = 88.5 bits (216), Expect = 5e-17
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + +N + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +++W
Sbjct: 50 FATRSLNVNEKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLR 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ +I + L+GNK DL D K F A N +L F TSAL++ N++
Sbjct: 110 ELRDHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSF---AENESLYFMETSALESTNVENA 166
Query: 699 FLEMGERMLKIGHKMEKKGLNVNRRKRN 782
F E+ + +I H + KK + N
Sbjct: 167 FSEV---LTQIYHVVSKKAMEAGEDSGN 191
>gi|141306|sp|P17610|YPT3_SCHPO YPT1-RELATED PROTEIN 3 (RAB) >gi|82805|pir||S10026 GTP-binding
protein ypt3 - fission yeast (Schizosaccharomyces pombe)
>gi|5038|emb|CAA36946| (X52732) GTP-binding protein (AA
1 - 214) [Schizosaccharomyces pombe]
>gi|5152|emb|CAA36320| (X52100) ypt3
[Schizosaccharomyces pombe] >gi|1122368|emb|CAA92383|
(Z68198) YPT1-related rab subfamily protein
[Schizosaccharomyces pombe]
Length = 214
Score = 88.5 bits (216), Expect = 5e-17
Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ IV++ + +K QIWDTAGQER+ +IT YYR A G +V+ + SFD + +W +
Sbjct: 47 FATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLK 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ ++I I L+GNK DLL + + E + A NL F TSA+ N+++ F
Sbjct: 107 ELREHADSNIVIMLVGNKTDLL-HLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAF 164
>gi|3024519|sp|P56371|RB4A_MOUSE RAS-RELATED PROTEIN RAB-4A >gi|2706878|dbj|BAA24034| (D86563) rab 4
[Mus musculus]
Length = 213
Score = 88.5 bits (216), Expect = 5e-17
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ SK I + G+ +KLQIWDTAGQERF S+T++YYR A G LV+ + +++ + W
Sbjct: 45 FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN----DIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+I + L GNK DL D + RF A L F TSAL +N+++
Sbjct: 105 DARMLASQNIVLILCGNKKDLDADREVTFLEASRF---AQENELMFLETSALTGENVEEA 161
Query: 699 FLEMGERMLKIGHKMEKKGLNVNR 770
F++ ++L +K+E L+ R
Sbjct: 162 FMQCARKIL---NKIESGELDPER 182
>gi|3024525|sp|Q15286|RB1C_HUMAN RAS-RELATED PROTEIN RAB-1C (GTP-BINDING PROTEIN RAY)
>gi|1082425|pir||JC2488 GTP-binding protein H-ray -
human >gi|763122|emb|CAA56177| (X79781) ray [Homo
sapiens] >gi|3970972 (AC004812) GTP-binding protein
H-ray [Homo sapiens]
Length = 201
Score = 88.2 bits (215), Expect = 6e-17
Identities = 54/169 (31%), Positives = 89/169 (51%), Gaps = 5/169 (2%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+LI+G+ + + + ++ + + INGE +KLQ
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR +G+ +V+ + SF + +W I +D+ L+G
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG 119
Query: 579 NKYD----LLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
NK D + + D +F A M ++ F TSA +N N++++F + E +L+
Sbjct: 120 NKNDDPERKVVETEDAYKF---AGQMGIQLFETSAKENVNVEEMFNCITELVLR 170
>gi|1619853 (U68257) rab10-like [Caenorhabditis elegans]
Length = 124
Score = 88.2 bits (215), Expect = 6e-17
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + + ++ K I + G+ +KLQIWDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQIWDTAGQE 69
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNK 584
RFH+IT +YYR A GI LV+ + + +SFD I KW I D+ ++GNK
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHASEDVVKMILGNK 123
>gi|1448941 (L48181) ypt-related protein [Brassica campestris]
Length = 206
Score = 88.2 bits (215), Expect = 6e-17
Identities = 50/163 (30%), Positives = 89/163 (53%), Gaps = 3/163 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + SF+ + +W I + + LIGNK D+++
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANDSVCKLLIGNKNDMVES 128
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM-GERMLKIG 734
+ + + A + + F TSA + N+++ FL + GE K+G
Sbjct: 129 KVVSTETGKALADELGIPFLETSAKDSTNVEQAFLTIAGEIKKKMG 174
>gi|131801|sp|P20336|RB3A_HUMAN RAS-RELATED PROTEIN RAB-3A >gi|106186|pir||C34323 GTP-binding
protein Rab3A - human >gi|550064 (M28210) GTP-binding
protein [Homo sapiens]
>gi|4506367|ref|NP_002857.1|pRAB3A| RAB3A, member RAS
oncogene family
Length = 220
Score = 88.2 bits (215), Expect = 6e-17
Identities = 50/152 (32%), Positives = 77/152 (49%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKILI+G + F F ++ K I N + +KLQIWDTAGQE
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D+
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +R A ++ FF SA N N+ + F
Sbjct: 143 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 176
>gi|92341|pir||S01765 GTP-binding protein rab3 - rat >gi|57008|emb|CAA30005| (X06889)
rab3 protein (AA 1 - 220) [Rattus norvegicus]
Length = 220
Score = 88.2 bits (215), Expect = 6e-17
Identities = 50/152 (32%), Positives = 77/152 (49%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKILI+G + F F ++ K I N + +KLQIWDTAGQE
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D+
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +R A ++ FF SA N N+ + F
Sbjct: 143 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 176
>gi|131790|sp|P05713|RB3A_MOUSE RAS-RELATED PROTEIN RAB-3A >gi|479481|pir||S34070 GTP-binding
protein rab3A - mouse >gi|2342528|emb|CAA51470| (X72966)
low molecular weight GTP-binding protein [Mus musculus]
Length = 220
Score = 88.2 bits (215), Expect = 6e-17
Identities = 50/152 (32%), Positives = 77/152 (49%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKILI+G + F F ++ K I N + +KLQIWDTAGQE
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D+
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +R A ++ FF SA N N+ + F
Sbjct: 143 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 176
>gi|89582|pir||A29224 GTP-binding protein smg-25A - bovine
Length = 220
Score = 88.2 bits (215), Expect = 6e-17
Identities = 50/152 (32%), Positives = 77/152 (49%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKILI+G + F F ++ K I N + +KLQIWDTAGQE
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D+
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +R A ++ FF SA N N+ + F
Sbjct: 143 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 176
>gi|464532|sp|P34143|RABC_DICDI RAS-RELATED PROTEIN RABC >gi|304606 (L21013) RabC [Dictyostelium
discoideum] >gi|739978|prf||2004272E rabC gene
[Dictyostelium discoideum]
Length = 196
Score = 84.7 bits (206), Expect = 6e-17
Identities = 38/108 (35%), Positives = 67/108 (61%), Gaps = 1/108 (0%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
G+++KLQ+WDTAGQERF SIT+ +YR ++G+ +V+ + D +SF+ + W E I +
Sbjct: 54 GQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERLKNWVEDINQYTQDG 113
Query: 558 IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ I L+GNK D++ ++ + A + +F SA +N + ++F
Sbjct: 114 MIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVF 162
Score = 23.9 bits (50), Expect = 6e-17
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGK+SIL RF +TF+ T+
Sbjct: 17 VGKSSILVRFTDNTFSQHFAPTL 39
>gi|3878422|emb|CAB01884| (Z79601) Simialrity to Rat RAS-related protein RAB-14
(SW:RB14_RAT); cDNA EST EMBL:D73176 comes from this
gene; cDNA EST EMBL:D76170 comes from this gene; cDNA
EST yk479h5.3 comes from this gene; cDNA EST yk479h5.5
comes from t...
Length = 210
Score = 87.8 bits (214), Expect = 8e-17
Identities = 45/124 (36%), Positives = 72/124 (57%), Gaps = 2/124 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I ++G+ +KLQIWDTAGQERF ++T++YYR A G +V+ + +++ + W
Sbjct: 48 FGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLA 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + IFLIGNK D L+D D+ E K A L F SA N++ FL
Sbjct: 108 DAKSLTNPNTAIFLIGNKAD-LEDQRDVPYEEAKAFAEENGLTFLECSAKTGSNVEDAFL 166
Query: 705 EMGERM 722
E +++
Sbjct: 167 ETAKQI 172
>gi|2143772|pir||JC5066 GTP-binding protein rab 3C - rat >gi|1373214 (U54807) GTP-binding
protein [Rattus norvegicus]
Length = 227
Score = 87.8 bits (214), Expect = 8e-17
Identities = 51/162 (31%), Positives = 81/162 (49%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + N + +KLQIWDTAGQE
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQE 90
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ D+
Sbjct: 91 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 150
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ +R + FF TSA N N+ + F ER++ I
Sbjct: 151 RVVSTERGRHLGEQLGFEFFETSAKDNINVKQTF----ERLVDI 190
>gi|1370164|emb|CAA98159| (Z73931) RAB1B [Lotus japonicus]
Length = 194
Score = 87.8 bits (214), Expect = 8e-17
Identities = 48/155 (30%), Positives = 84/155 (53%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + + +++KLQIWDTAGQE
Sbjct: 1 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQE 60
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL
Sbjct: 61 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL--T 118
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N +ET A + + F TSA N+++ F+ M
Sbjct: 119 ANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAM 157
>gi|2500073|sp|Q39571|YPT1_CHLRE GTP-BINDING PROTEIN YPTC1 >gi|1363473|pir||JC4105 membrane vesicle
transport protein ypt C1 - Chlamydomonas reinhardtii
>gi|806724 (U13168) YptC1 [Chlamydomonas reinhardtii]
Length = 203
Score = 87.8 bits (214), Expect = 8e-17
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + ++G+ +KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR A+GI +V+ + D SF+ + +W I ++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSK 128
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ + + A + + F TSA N+++ F+ M
Sbjct: 129 KVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTM 165
>gi|1053067 (U38466) small GTP-binding protein [Solanum lycopersicum]
Length = 203
Score = 87.8 bits (214), Expect = 8e-17
Identities = 48/155 (30%), Positives = 83/155 (52%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D SF+ + +W I ++ L+GNK DL D
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDITDQESFNNVKQWLSEIDRYASENVNKLLVGNKSDLND- 127
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N ++T A + + F SA N+++ F+ M
Sbjct: 128 -NRAVSYDTAKAFADEIGIPFMEASAKSATNVEQAFMAM 165
>gi|349484 (L12031) GTP-binding protein homologue [Leishmania major]
Length = 200
Score = 87.8 bits (214), Expect = 8e-17
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + + + +KLQIWDTAGQE
Sbjct: 9 FKLLLIGDTGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLESKVIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ D SF+ + W I ++ L+GNK DL+
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIEKYASENVNKILVGNKCDLVTK 128
Query: 603 MN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
D + + A ++ + F TSA + N+++ F++M
Sbjct: 129 KAVDTQMAKDFADSLGIPFLETSAKNSTNVEEAFIQM 165
>gi|131796|sp|P20340|RAB6_HUMAN RAS-RELATED PROTEIN RAB-6 >gi|106190|pir||G34323 GTP-binding
protein Rab6 - human >gi|550072 (M28212) GTP-binding
protein [Homo sapiens]
>gi|4506373|ref|NP_002860.1|pRAB6| RAB6, member RAS
oncogene family
Length = 208
Score = 87.8 bits (214), Expect = 8e-17
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 243 RFKILILGE-XM*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQ 419
+FK++ LGE + + + ++ SK + + +++LQ+WDTAGQ
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 72
Query: 420 ERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD 599
ERF S+ +Y R++ +V+ + + SF KW + + E G+D+ I L+GNK DL D
Sbjct: 73 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 600 DMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
I+ E KA +N+ F TSA N+ ++F
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>gi|2313035|dbj|BAA21706| (D84313) rab2 [Drosophila melanogaster]
Length = 213
Score = 87.8 bits (214), Expect = 8e-17
Identities = 50/139 (35%), Positives = 81/139 (57%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D LD ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|1304207|dbj|BAA11302| (D78197) rab3C [Rattus norvegicus]
Length = 227
Score = 87.4 bits (213), Expect = 1e-16
Identities = 51/162 (31%), Positives = 81/162 (49%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + N + +KLQIWDTAGQE
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQE 90
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L GNK D+ D+
Sbjct: 91 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDE 150
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ +R + + FF TSA N N+ + F ER++ I
Sbjct: 151 RVVSTERGQRLGEQLGFEFFETSAKDNINVKQTF----ERLVDI 190
>gi|1045640 (U37099) rab3c [Rattus norvegicus]
Length = 195
Score = 87.4 bits (213), Expect = 1e-16
Identities = 51/162 (31%), Positives = 81/162 (49%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + N + +KLQIWDTAGQE
Sbjct: 8 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQE 67
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L GNK D+ D+
Sbjct: 68 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDE 127
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ +R + + FF TSA N N+ + F ER++ I
Sbjct: 128 RVVSTERGQRLGEQLGFEFFETSAKDNINVKQTF----ERLVDI 167
>gi|1616614|emb|CAA69701| (Y08425) small GTP-binding protein [Nicotiana plumbaginifolia]
Length = 203
Score = 87.4 bits (213), Expect = 1e-16
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-LD 599
RF +IT +YYR A+GI +V+ + D SF+ + +W I + + L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYASDSVNKLLVGNKCDLTAQ 128
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ + + A + + F TSA N+++ F+ M
Sbjct: 129 KVVSTETAQAFADEIGIPFMETSAKNATNVEQAFMAM 165
>gi|1053063 (U38464) small GTP-binding protein [Solanum lycopersicum]
Length = 203
Score = 87.0 bits (212), Expect = 1e-16
Identities = 46/155 (29%), Positives = 83/155 (52%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSRLLLRFADDSYLESYISTIGVDFKIRTVDQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-LD 599
RF +IT +YYR A+GI +V+ + D SF+ + +W I +++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTAQ 128
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ + + A + + F TSA N+++ F+ M
Sbjct: 129 KVVSTETAQAFADEIGIPFMETSAKNATNVEQAFMAM 165
>gi|131849|sp|P22129|R11B_DISOM RAS-RELATED PROTEIN RAB-11B (ORA3) >gi|103725|pir||C38625
GTP-binding protein ora3 - electric ray (Discopyge
ommata) >gi|213121 (M38392) GTP-binding protein
[Discopyge ommata]
Length = 218
Score = 87.0 bits (212), Expect = 1e-16
Identities = 43/117 (36%), Positives = 73/117 (61%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++G+++K QIWDTAGQER+ +IT YYR A G LV+ + +++ +++W +
Sbjct: 48 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ N+I I L+GNK D L + + E + A NL F TSAL + N+++ F
Sbjct: 108 ELRDHADNNIVIMLVGNKSD-LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165
>gi|131792|sp|P20338|RB4A_HUMAN RAS-RELATED PROTEIN RAB-4A >gi|106188|pir||E34323 GTP-binding
protein Rab4 - human >gi|550068 (M28211) GTP-binding
protein [Homo sapiens]
Length = 213
Score = 87.0 bits (212), Expect = 1e-16
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ SK I + G+ +KLQIWDTAGQERF S+T++YYR A G LV+ + +++ + W
Sbjct: 45 FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN----DIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+I I L GNK DL D + RF A L F TSAL +++++
Sbjct: 105 DARMLASQNIVIILCGNKKDLDADREVTFLEASRF---AQENELMFLETSALTGEDVEEA 161
Query: 699 FLEMGERMLKIGHKMEKKGLNVNR 770
F++ ++L +K+E L+ R
Sbjct: 162 FVQCARKIL---NKIESGELDPER 182
>gi|4097557 (U64911) ATFP8 [Arabidopsis thaliana]
Length = 205
Score = 86.6 bits (211), Expect = 2e-16
Identities = 50/163 (30%), Positives = 87/163 (52%), Gaps = 3/163 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + SF+ + +W I + LIGNK D+++
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVES 128
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM-GERMLKIG 734
+ + A + + F TSA + N+++ FL + GE K+G
Sbjct: 129 KVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMG 174
>gi|1943772 (U97191) strong similarity to the YPT1 sub-family of RAS proteins
[Caenorhabditis elegans]
Length = 214
Score = 86.6 bits (211), Expect = 2e-16
Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTSWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++KR E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LEARREVKREEGEAFAREHGLVFMETSAKTAANVEEAFI 161
Query: 705 EMGERMLK 728
+ + + +
Sbjct: 162 DTAKEIYR 169
>gi|106185|pir||B34323 GTP-binding protein Rab2 - human >gi|550062 (M28213) GTP-binding
protein [Homo sapiens]
Length = 212
Score = 86.6 bits (211), Expect = 2e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLMFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|131791|sp|P22750|RB4B_CANFA RAS-RELATED PROTEIN RAB-4B >gi|108108|pir||F36364 GTP-binding
protein Rab4b - dog >gi|919|emb|CAA39800| (X56389) rab4b
[Canis familiaris]
Length = 213
Score = 86.6 bits (211), Expect = 2e-16
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ + + G+++KLQIWDTAGQERF S+T++YYR A G LV+ + +++ + W
Sbjct: 45 FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLT 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+I + L GNK D LD ++ E A L F TSAL +N+++ FL
Sbjct: 105 DARTLASPNIVVILCGNKKD-LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 163
Query: 705 EMGERML 725
+ +L
Sbjct: 164 KCARTIL 170
>gi|131793|sp|P05714|RB4A_RAT RAS-RELATED PROTEIN RAB-4A >gi|92343|pir||S01766 GTP-binding
protein rab4 - rat
Length = 213
Score = 86.6 bits (211), Expect = 2e-16
Identities = 51/140 (36%), Positives = 76/140 (53%), Gaps = 4/140 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ K I + G+ +KLQIWDTAGQERF S+T +YYR A G LV+ + +++ + W
Sbjct: 45 FGQKIINVGGKYVKLQIWDTAGQERFRSVTTSYYRGAAGALLVYDITSRETYNALTNWLT 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN----DIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+I I L GNK DL D + RF A L F TSAL +N+++
Sbjct: 105 DARMLASQNIVIILCGNKKDLDADREVTFLEASRF---AQENELMFLETSALTGENVEEA 161
Query: 699 FLEMGERMLKIGHKMEKKGLNVNR 770
F++ ++L +K+E L+ R
Sbjct: 162 FMQCARKIL---NKIESGELDPER 182
>gi|1710026|sp|P51146|RB4B_RAT RAS-RELATED PROTEIN RAB-4B >gi|2118460|pir||S58279 ras-homolog
GTPase rab4b - rat >gi|929830|emb|CAA55339| (X78605)
ras-homologous GTPase rab4b [Rattus norvegicus]
Length = 213
Score = 86.6 bits (211), Expect = 2e-16
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ + + G+++KLQIWDTAGQERF S+T++YYR A G LV+ + +++ + W
Sbjct: 45 FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLT 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+I + L GNK D LD ++ E A L F TSAL +N+++ FL
Sbjct: 105 DARTLASPNIVVILCGNKKD-LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 163
Query: 705 EMGERML 725
+ +L
Sbjct: 164 KCARTIL 170
>gi|1619869 (U68265) RAB-3 [Caenorhabditis elegans] >gi|1619871 (U68266) RAB-3
[Caenorhabditis elegans]
Length = 219
Score = 86.2 bits (210), Expect = 2e-16
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + +KLQIWDTAGQE
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-LD 599
R+ +IT YYR A G L++ + ++ SF+ + W I + + L+GNK D+ +
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSE 142
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ + R A + L FF TSA +N N+ +F ++ E
Sbjct: 143 RVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVE 181
>gi|1370168|emb|CAA98161| (Z73933) RAB1D [Lotus japonicus]
Length = 203
Score = 86.2 bits (210), Expect = 2e-16
Identities = 47/155 (30%), Positives = 84/155 (53%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + + +++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFGDDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL--T 126
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N ++T A + + F TSA N+++ F+ M
Sbjct: 127 ANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMAM 165
>gi|1370170|emb|CAA98162| (Z73934) RAB1E [Lotus japonicus]
Length = 203
Score = 86.2 bits (210), Expect = 2e-16
Identities = 47/155 (30%), Positives = 84/155 (53%), Gaps = 4/155 (2%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + + +++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI +V+ + D+ SF+ + +W I +++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL--T 126
Query: 603 MNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
N ++T A + + F TSA N+++ F+ M
Sbjct: 127 ANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMGM 165
>gi|1619851 (U68256) rab8-like [Caenorhabditis elegans]
Length = 123
Score = 86.2 bits (210), Expect = 2e-16
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA FK+L++G+ + + V F ++ + I ++G+ +KLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIG 578
IWDTAGQERF +IT YYR A GI LV+ + ++RSF+ I W I +D+ +IG
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDVERMIIG 120
Query: 579 NK 584
NK
Sbjct: 121 NK 122
>gi|861352 (U28944) coded for by C. elegans cDNA CEESC15F; coded for by C.
elegans cDNA CEESC15R; similar to GTP-binding protein
SMG P25C (SP:P25C_BOVIN, P10949) and other RAS and
YPT1-related proteins [Caenorhabditis elegans]
Length = 343
Score = 86.2 bits (210), Expect = 2e-16
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + +KLQIWDTAGQE
Sbjct: 88 FKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQE 147
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-LD 599
R+ +IT YYR A G L++ + ++ SF+ + W I + + L+GNK D+ +
Sbjct: 148 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSE 207
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ + R A + L FF TSA +N N+ +F ++ E
Sbjct: 208 RVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVE 246
>gi|2313037|dbj|BAA21707| (D84314) rab6 [Drosophila melanogaster]
Length = 208
Score = 86.2 bits (210), Expect = 2e-16
Identities = 47/153 (30%), Positives = 80/153 (51%), Gaps = 2/153 (1%)
Query: 243 RFKILILGE-XM*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQ 419
+FK++ LGE + + + ++ SK + + +++LQ+WDTAGQ
Sbjct: 12 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 71
Query: 420 ERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD 599
ERF S+ +Y R++ +V+ + + SF KW + + E G+D+ I L+GNK DL D
Sbjct: 72 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 131
Query: 600 DMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ E KA +N+ F TSA N+ ++F
Sbjct: 132 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 166
>gi|1346952|sp|P48555|RALA_DROME RAS-RELATED PROTEIN RAL-A
Length = 201
Score = 85.8 bits (209), Expect = 3e-16
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++V++GE +++ I DTAGQE + +I NY+R+ G VFS+ DD SF ++ E I+
Sbjct: 50 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQIL 109
Query: 540 AEVGND--IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
V ND IP L+GNK DL D + F +A + + TSA +N+DK+F ++
Sbjct: 110 -RVKNDESIPFLLVGNKCDLNDKRKVPLSEFHLRAQQWAVPYVETSAKTRENVDKVFFDL 168
>gi|464525|sp|P34140|RB1B_DICDI RAS-RELATED PROTEIN RAB1B >gi|304600 (L21010) Rab1B [Dictyostelium
discoideum] >gi|739975|prf||2004272B rab1B gene
[Dictyostelium discoideum]
Length = 199
Score = 85.8 bits (209), Expect = 3e-16
Identities = 48/162 (29%), Positives = 88/162 (53%), Gaps = 2/162 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + I ++G+ +KLQIWDTAG E
Sbjct: 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAG-E 61
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD- 599
RF +IT +YYR A+GI +V+ + D SF+ + +W + I + + L+GNK DL++
Sbjct: 62 RFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEK 121
Query: 600 DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ D A ++ + F TSA + N+++ F+ M + K+
Sbjct: 122 KIVDTSTAREYADSVGIPFKETSAKSSANVEQAFMIMASEIKKL 165
>gi|1125833 (U43283) Similar to ras-related protein; coded for by C. elegans
cDNA CEESK32F; coded for by C. elegans cDNA yk82h5.3;
coded for by C. elegans cDNA yk82h5.5; coded for by C.
elegans cDNA yk168c1.3; coded for by C. elegans cDNA
yk168c1.5 [Cae...
Length = 205
Score = 85.8 bits (209), Expect = 3e-16
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 240 ERFKILILGE-XM*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAG 416
++FK++ LGE + + + ++ SK + + +++LQ+WDTAG
Sbjct: 9 KKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 68
Query: 417 QERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLL 596
QERF S+ +Y R++ +V+ + + SF KW + + E G+D+ I L+GNK DL
Sbjct: 69 QERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 128
Query: 597 DDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
D E KA +N+ F TSA N+ ++F
Sbjct: 129 DKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF 164
>gi|103721|pir||E38625 GTP-binding protein o-ral - electric ray (Discopyge ommata)
Length = 207
Score = 85.8 bits (209), Expect = 3e-16
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++V++GE +++ I DTAGQE + +I NY+R+ G VFS+ + SF ++ E I
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEQESFTATVEFREQIL 112
Query: 537 -VAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
V + IP+ L+GNK DL D I+ +KA +++ TSA N+DK+F ++
Sbjct: 113 RVKAEEDKIPLLLVGNKSDLEDRRQVSIEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 172
Query: 711 GERMLKIGHKMEKKGLNVNRRKRN 782
++ E K N + RN
Sbjct: 173 MREEVRAKKMSENKDKNGKKSSRN 196
>gi|131788|sp|P08886|RAB2_HUMAN RAS-RELATED PROTEIN RAB-2 >gi|108106|pir||A39648 GTP-binding
protein rab2 - dog >gi|35837|emb|CAA31411| (X12953) rab2
gene product (AA 1 - 212) [Homo sapiens] >gi|164054
(M35521) GTP-binding protein (rab2) [Canis familiaris]
>gi|4506365|ref|NP_002856.1|pRAB2| RAB2, member RAS
oncogene family
Length = 212
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|266878|sp|Q01971|RAB2_RABIT RAS-RELATED PROTEIN RAB-2 >gi|109237|pir||S23979 GTP-binding
protein rab2 - rabbit >gi|1696|emb|CAA48208| (X68071)
tubulovesicle-membrane-associated GTP-binding protein
[Oryctolagus cuniculus]
Length = 212
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|131789|sp|P05712|RAB2_RAT RAS-RELATED PROTEIN RAB-2 >gi|92340|pir||B39963 GTP-binding protein
rab2 - rat >gi|206555 (J02999) ras protein [Rattus
norvegicus]
Length = 212
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|1079409|pir||S52325 GTP-binding protein - chicken >gi|664925|emb|CAA59004| (X84220)
GTP-binding protein [Gallus gallus]
Length = 212
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|108107|pir||I36364 GTP-binding protein Rab2 - dog
Length = 212
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|1709998|sp|P53994|RAB2_MOUSE RAS-RELATED PROTEIN RAB-2 >gi|1177547|emb|CAA64684| (X95403)
GTP-binding protein [Mus musculus]
Length = 212
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|131837|sp|P22124|RAL_DISOM RAS-RELATED PROTEIN O-RAL >gi|213117 (M38394) GTP-binding protein
[Discopyge ommata]
Length = 206
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/141 (34%), Positives = 81/141 (56%), Gaps = 5/141 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++V++GE +++ I DTAGQE + +I NY+R+ G VFS+ + SF ++ E I
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEQESFTATVEFREQIL 112
Query: 537 -VAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
V + IP+ L+GNK DL D I+ +KA +++ TSA N+DK+F ++
Sbjct: 113 RVKAEEDKIPLLLVGNKSDLEDRRQVSIEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 172
Query: 711 GE--RMLKIGHKMEKKGLNVNRRKRN 782
R K+ +K G +R K++
Sbjct: 173 MREVRAKKMSENKDKNGKKSSRNKKS 198
>gi|1588651|prf||2209256A rab2 gene [Gallus gallus]
Length = 220
Score = 85.8 bits (209), Expect = 3e-16
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 161
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
+ +I K+++ ++N
Sbjct: 162 NTAK---EIYEKIQEGVFDIN 179
>gi|464569|sp|P35276|RB3D_MOUSE RAS-RELATED PROTEIN RAB-3D >gi|200632 (M89777) GTP-binding protein
[Mus musculus]
Length = 219
Score = 85.4 bits (208), Expect = 4e-16
Identities = 55/174 (31%), Positives = 87/174 (49%), Gaps = 8/174 (4%)
Query: 210 PPNPMAAIKQE---RFKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVIN 377
P +P A Q FK+L++G + F F ++ K + +
Sbjct: 8 PASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH 67
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
+ +KLQIWDTAGQER+ +IT YYR A G L++ + + SF + W I ++
Sbjct: 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDN 127
Query: 558 IPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+ L+GNK DL D+ D +R A ++ FF SA +N N+ ++F ER++
Sbjct: 128 AQVILVGNKCDLEDERVVPAEDGRRL---ADDLGFEFFEASAKENINVKQVF----ERLV 180
Query: 726 KI 731
I
Sbjct: 181 DI 182
>gi|2253637 (U90206) GTP-binding protein rab3d [Rattus norvegicus]
Length = 219
Score = 85.4 bits (208), Expect = 4e-16
Identities = 53/174 (30%), Positives = 87/174 (49%), Gaps = 5/174 (2%)
Query: 210 PPNPMAAIKQE---RFKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVIN 377
P +P A Q FK+L++G + F F ++ K + +
Sbjct: 8 PASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH 67
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
+ +KLQIWDTAGQER+ +IT YYR A G L++ + + SF + W I ++
Sbjct: 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDN 127
Query: 558 IPIFLIGNKYDLLDD-MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ L+GNK DL D+ + + + A ++ FF SA +N N+ ++F ER++ I
Sbjct: 128 AQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVF----ERLVDI 182
>gi|283769|pir||A43958 GTP-binding protein, synaptic vesicle specific - electric ray
(Discopyge ommata) >gi|241077|bbs|72946 (S72944)
synaptic vesicle specific GTP-binding protein [Discopyge
ommata=electric rays, Peptide, 218 aa] [Discopyge
ommata]
Length = 218
Score = 85.4 bits (208), Expect = 4e-16
Identities = 51/162 (31%), Positives = 81/162 (49%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + N + +KLQIWDTAGQE
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNEKRVKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + + SF + W I ++ + L+GNK DL D+
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDITNQDSFGAVHDWATQIKTYSWDNAQVILVGNKSDLEDN 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ + + A + FF SA +N N+ ++F ER++ I
Sbjct: 143 RVVPTEEGKRLADELGFEFFEASAKENINVKQVF----ERLVDI 182
>gi|1172815|sp|P46638|R11B_MOUSE RAS-RELATED PROTEIN RAB-11B >gi|627872|pir||A55005 GTP-binding
protein Rab11b - mouse >gi|433064 (L26528) Rab11b [Mus
musculus]
Length = 218
Score = 85.0 bits (207), Expect = 5e-16
Identities = 42/117 (35%), Positives = 73/117 (61%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++G+++K QIWDTAGQER+ +IT YYR A G LV+ + +++ +++W +
Sbjct: 48 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ ++I I L+GNK D L + + E + A NL F TSAL + N+++ F
Sbjct: 108 ELRDHADSNIVIMLVGNKSD-LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165
>gi|1710022|sp|P51156|RB26_RAT RAS-RELATED PROTEIN RAB-26 >gi|619734 (U18771) Rab26 [Rattus
norvegicus]
Length = 190
Score = 84.7 bits (206), Expect = 7e-16
Identities = 46/125 (36%), Positives = 70/125 (55%), Gaps = 2/125 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +K + ++G +KLQIWDTAGQERF S+T YYR+A+ + L++ + + SFD I W
Sbjct: 34 DFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWL 93
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIF 701
I D+ + L+GNK D + +KR E A L F TSA N+D F
Sbjct: 94 TEIQEYAQQDVVLMLLGNKVDSTQE-RVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAF 152
Query: 702 LEMGERM 722
+ + +
Sbjct: 153 TAIAKEL 159
>gi|2245111|emb|CAB10533| (Z97343) unnamed protein product [Arabidopsis thaliana]
Length = 221
Score = 84.7 bits (206), Expect = 7e-16
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 28 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 87
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT +YYR A+GI + + + D SF+ + +W I ++ L+GNK DL
Sbjct: 88 RFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQ 147
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ + + A + + F TSA N+++ F+ M
Sbjct: 148 KVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAM 184
>gi|303730|dbj|BAA02108| (D12540) GTP-binding protein [Pisum sativum]
>gi|738933|prf||2001457A GTP-binding protein [Pisum
sativum]
Length = 215
Score = 84.7 bits (206), Expect = 7e-16
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I+G+ +K QIWDTAGQERF ++T YYR A G +V+ + +FD I +W +
Sbjct: 49 FQTQTVEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAFGALVVYDISRRGTFDSIKRWLD 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ + + + L+GNK D L+ + ++ E K A L F TSAL + N+ K F
Sbjct: 109 ELTTQNDSTVARMLVGNKCD-LESLREVSTEEGKAFAEEEGLFFMETSALDSTNVQKAF 166
>gi|420274|pir||G42148 GTP-binding protein rab16 - rat
Length = 198
Score = 84.7 bits (206), Expect = 7e-16
Identities = 49/162 (30%), Positives = 81/162 (49%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G + F F ++ K + + + +KLQIWDTAGQE
Sbjct: 2 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 61
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + + SF + W + G + L+GNK DL D+
Sbjct: 62 RYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWLRRLKPIPGTTPQVILVGNKCDLEDE 121
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ + + A ++ FF SA +N N+ ++F ER++ I
Sbjct: 122 RVVSAEDGQRLAGDLGFEFFEASAKENINVKQVF----ERLVDI 161
>gi|464527|sp|P34213|RAB6_CAEEL RAS-RELATED PROTEIN RAB-6 HOMOLOG F59B2.7 >gi|345349|pir||S31127
hypothetical protein F59B2.7 - Caenorhabditis elegans
>gi|3877850|emb|CAA77590| (Z11505) predicted using
Genefinder; sequence similarity to ras-related
gtp-binding proteins [Caenorhabditis elegans]
Length = 205
Score = 84.7 bits (206), Expect = 7e-16
Identities = 47/154 (30%), Positives = 82/154 (52%), Gaps = 2/154 (1%)
Query: 240 ERFKILILGE-XM*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAG 416
++FK++ LGE + + + ++ SK + + +++LQ+WDTAG
Sbjct: 10 KKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 69
Query: 417 QERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLL 596
QERF S+ +Y R+++ +V+ + + SF KW + + E G D+ I L+GNK DL
Sbjct: 70 QERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLA 129
Query: 597 DDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
D + E KA ++N+ F TSA N+ ++F
Sbjct: 130 DKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLF 165
>gi|3024528|sp|Q39434|RAB2_BETVU RAS-RELATED PROTEIN RAB2BV >gi|974778|emb|CAA89049| (Z49190) small
G protein [Beta vulgaris]
Length = 214
Score = 84.7 bits (206), Expect = 7e-16
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + + G+++K QIWDTAGQER+ +IT YYR A G LV+ + ++FD + +W
Sbjct: 49 FATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLR 108
Query: 531 GIVAEVGNDIPIFLIGNKYDL--LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ ++I I + GNK DL L +++ + + A L F TSAL+ NI+K F
Sbjct: 109 ELRDHADSNIVIMMAGNKSDLKHLRAVSE-EDGQALAEKEGLSFLETSALEAVNIEKAFQ 167
Query: 705 EMGERMLKIGHKMEKKGLNVNRRKRN 782
+ + +I H + KK L N
Sbjct: 168 TI---LTEIYHIISKKALAAQEASSN 190
>gi|3879231|emb|CAA91296| (Z66499) similar to ras-related protein [Caenorhabditis elegans]
Length = 207
Score = 84.7 bits (206), Expect = 7e-16
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 2/182 (1%)
Query: 234 KQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDT 410
K +FKI++LGE + + + ++ +K + + L IWDT
Sbjct: 9 KSFKFKIVLLGEGCVGKSSLVLRFVENKFSCKHLSTIQASFQNKTVNVEDCQADLHIWDT 68
Query: 411 AGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYD 590
AGQE++H++ YYR +NG+ LVF + D +SF+ + W I +GN I ++GNK D
Sbjct: 69 AGQEKYHALGPIYYRGSNGVLLVFDITDRKSFEKVKNWVLEIKTCLGNTAEILIVGNKID 128
Query: 591 LLDDMNDIKR-FETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVN 767
L ++ ++ E A + + TSA N I F + +M++ + + N
Sbjct: 129 LEEERQVTRQDAEAYAESEGALYMETSAQDNVGISDAFESLTAKMIEHSRTRSTEPPSTN 188
Query: 768 RRKR 779
R R
Sbjct: 189 RSIR 192
>gi|57010|emb|CAA30006| (X06890) rab4 protein (AA 1 - 213) [Rattus sp.]
Length = 213
Score = 84.7 bits (206), Expect = 7e-16
Identities = 50/140 (35%), Positives = 75/140 (52%), Gaps = 4/140 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ K I + G+ +KLQIWDTAGQERF S+T +YYR A G LV+ + +++ + W
Sbjct: 45 FGQKIINVGGKYVKLQIWDTAGQERFRSVTTSYYRGAAGALLVYDITSRETYNALTNWLT 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN----DIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+I I L GNK DL D + RF A L F TS L +N+++
Sbjct: 105 DARMLASQNIVIILCGNKKDLDADREVTFLEASRF---AQENELMFLETSPLTGENVEEA 161
Query: 699 FLEMGERMLKIGHKMEKKGLNVNR 770
F++ ++L +K+E L+ R
Sbjct: 162 FMQCARKIL---NKIESGELDPER 182
>gi|464563|sp|P35291|RB16_RAT RAS-RELATED PROTEIN RAB-16 >gi|206539 (M83681) RAB16 [Rattus
norvegicus]
Length = 198
Score = 84.3 bits (205), Expect = 9e-16
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G + F F ++ K + + + +KLQIWDTAGQE
Sbjct: 2 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 61
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + + SF + W I ++ + L+GNK DL D+
Sbjct: 62 RYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 121
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ + + A ++ FF SA +N N+ ++F ER++ I
Sbjct: 122 RVVSAEDGQRLAGDLGFEFFEASAKENINVKQVF----ERLVDI 161
>gi|3024552|sp|Q40723|RGP2_ORYSA RAS-RELATED PROTEIN RGP2 (GTP-BINDING REGULATORY PROTEIN RGP2)
>gi|419797|pir||S30273 GTP-binding protein rgp2 - rice
>gi|218204|dbj|BAA02437| (D13152) GTP binding protein
[Oryza sativa] >gi|446772|prf||1912297A rgp2 gene [Oryza
sativa]
Length = 217
Score = 84.3 bits (205), Expect = 9e-16
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K + + G+++K QIWDTAGQER+ +IT YYR A G LV+ + +SFD + +W
Sbjct: 49 FATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLR 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ + I I ++GNK DL+ + + E K A L F TSA++ N+++ F
Sbjct: 109 ELRDHADSSIVIMMVGNKSDLI-HLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAF 166
>gi|3873658|emb|CAA20282| (AL031254) predicted using Genefinder; similar to Ras family
[Caenorhabditis elegans]
Length = 395
Score = 84.3 bits (205), Expect = 9e-16
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 10/133 (7%)
Query: 384 SLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIP 563
++ +Q+WDTAGQERF SITK Y+R A+G+ L+F + ++SF + W + + A V +
Sbjct: 251 AIAMQLWDTAGQERFRSITKQYFRKADGVVLMFDVTSEQSFLNVRNWIDSVRAGVDDATV 310
Query: 564 IFLIGNKYDLLDDMNDIKR------FETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+ L+GNK DL +DI R E A + FF TSA ID +M E +
Sbjct: 311 MCLVGNKMDLFG--SDIARSAVYRAAEKLAVEFKIPFFETSAYTGFGIDTCMRQMAENLQ 368
Query: 726 K--IGHKME--KKGLNVNRRKRN 782
+ H E K +N N +KR+
Sbjct: 369 RREDNHLEEALKLDINSNYKKRS 391
>gi|3024499|sp|Q15907|R11B_HUMAN RAS-RELATED PROTEIN RAB-11B (GTP-BINDING PROTEIN YPT3)
>gi|1082426|pir||JC2487 GTP-binding protein H-YPT3 -
human >gi|763130|emb|CAA56176| (X79780) YPT3 [Homo
sapiens]
Length = 218
Score = 84.3 bits (205), Expect = 9e-16
Identities = 42/117 (35%), Positives = 72/117 (60%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++G+++K QIWDTAGQER+ IT YYR A G LV+ + +++ +++W +
Sbjct: 48 FATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ ++I I L+GNK D L + + E + A NL F TSAL + N+++ F
Sbjct: 108 ELRDHADSNIVIMLVGNKSD-LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165
>gi|464526|sp|Q05975|RAB2_LYMST RAS-RELATED PROTEIN RAB-2 >gi|481219|pir||S38341 GTP-binding
protein rab2 - great pond snail >gi|288938|emb|CAA51234|
(X72689) RAB2 [Lymnaea stagnalis]
Length = 212
Score = 84.3 bits (205), Expect = 9e-16
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+++ I LIGNK D L+ ++K+ E + A L F TSA N+++ F+
Sbjct: 103 DARQHSNSNMVIMLIGNKSD-LEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFI 161
Query: 705 EMGERM 722
+ +
Sbjct: 162 NTAKEI 167
>gi|4557959|pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 83.9 bits (204), Expect = 1e-15
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKILI+G + F F ++ K I N + +KLQIWDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L + + ++ SF+ + W I ++ + L+GNK D D+
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +R A ++ FF SA N N+ + F
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
>gi|3041721|sp|P35294|RB19_MOUSE RAS-RELATED PROTEIN RAB-19 >gi|1083290|pir||PC4012 dGTPase (EC
3.1.5.1) - mouse (fragment) >gi|2598565|emb|CAA56644|
(X80473) rab19 [Mus musculus]
Length = 217
Score = 83.9 bits (204), Expect = 1e-15
Identities = 46/160 (28%), Positives = 89/160 (54%), Gaps = 5/160 (3%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK++++G+ + + V + +++ + + I+G+ +K+Q+WDTAGQE
Sbjct: 18 FKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQE 77
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF +IT++YYR+A+ + + + +F+ + W I ++ I LIGNK DL +
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEK 137
Query: 603 MNDIKRFETKATNMN----LRFFPTSALQNKNIDKIFLEMGERML 725
+ + FE T L TSA +++NID++F+ M + ++
Sbjct: 138 RHVL--FEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELI 180
>gi|586807|sp|P38555|YPT8_YEAST GTP-BINDING PROTEIN YPT8 >gi|630013|pir||S42679 GTP-binding protein
YPT8 - yeast (Saccharomyces cerevisiae) >gi|425713
(L17070) GTPase-activating protein [Saccharomyces
cerevisiae] >gi|603623 (U18778) Ypt31p [Saccharomyces
cerevisiae] >gi|927541|emb|CAA51354| (X72833) Ypt31p
[Saccharomyces cerevisiae]
Length = 223
Score = 83.9 bits (204), Expect = 1e-15
Identities = 44/120 (36%), Positives = 72/120 (59%), Gaps = 2/120 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + I+G+ +K QIWDTAGQER+ +IT YYR A G +V+ + S++ + W
Sbjct: 50 FATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLS 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +++ + LIGNK DL + + E+K A L F TSAL ++N+DK F
Sbjct: 110 ELRENADDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168
Query: 705 EM 710
E+
Sbjct: 169 EL 170
>gi|1370160|emb|CAA98186| (Z73958) RAB11J [Lotus japonicus]
Length = 223
Score = 83.9 bits (204), Expect = 1e-15
Identities = 45/117 (38%), Positives = 67/117 (56%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ +++I ING+ +K QIWDTAGQERF ++T YYR A G +V+ + ++FD I +W
Sbjct: 51 FQTQKIDINGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQTFDSIGRWLN 110
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ ++ L+GNK D L D ++ E K A L F TSAL + N+ F
Sbjct: 111 ELHTHSDMNVVTILVGNKSD-LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVAAAF 168
>gi|1220272|emb|CAA63652| (X93161) small GTPase rab11 [Plasmodium falciparum]
Length = 216
Score = 83.9 bits (204), Expect = 1e-15
Identities = 48/132 (36%), Positives = 77/132 (57%), Gaps = 5/132 (3%)
Query: 351 YSSKEIVI-NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
+++K I + N + +K QIWDTAGQER+ +IT YYR A G LV+ + SF+ I+KW
Sbjct: 48 FATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWL 107
Query: 528 EGIVAEVGNDIPIFLIGNKYDL----LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ + ++I I L+GNK DL + + ND ++ K L F TSAL+ N++
Sbjct: 108 KELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKE---KLAFIETSALEATNVEL 164
Query: 696 IFLEMGERMLKIGHKME 746
F ++ + + K +
Sbjct: 165 AFHQLLNEIYNVRQKKQ 181
>gi|3024501|sp|Q40193|R11C_LOTJA RAS-RELATED PROTEIN RAB11C >gi|1370146|emb|CAA98179| (Z73951)
RAB11C [Lotus japonicus]
Length = 216
Score = 83.9 bits (204), Expect = 1e-15
Identities = 47/136 (34%), Positives = 79/136 (57%), Gaps = 2/136 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + + G+++K QIWDTAGQER+ +IT YYR A G LV+ + ++FD + +W
Sbjct: 49 FATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLR 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATN--MNLRFFPTSALQNKNIDKIFL 704
+ ++I I + GNK D L+ + + + A + L F TSAL+ NI+K F
Sbjct: 109 ELRDHADSNIVIMMAGNKSD-LNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQ 167
Query: 705 EMGERMLKIGHKMEKKGL 758
+ + +I H + KK L
Sbjct: 168 TI---LTEIYHIVSKKAL 182
>gi|2500077|sp|Q99260|YPT6_YEAST GTP-BINDING PROTEIN YPT6 >gi|1077391|pir||S51399 YPT6 protein -
yeast (Saccharomyces cerevisiae) >gi|577182 (U17244)
Ylr262cp [Saccharomyces cerevisiae]
>gi|927545|emb|CAA42166| (X59598) Ypt6p [Saccharomyces
cerevisiae]
Length = 215
Score = 77.3 bits (187), Expect = 2e-15
Identities = 40/125 (32%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + ++ ++++LQ+WDTAGQERF S+ +Y R++ +V+ + +SF+ IDKW
Sbjct: 46 DFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWI 105
Query: 528 EGIVAEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLR-FFPTSALQNKNIDKI 698
E + E G++ + + ++GNK DL D+ + E KA + + F TS N+ +
Sbjct: 106 EDVKNERGDENVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKAL 165
Query: 699 FLEMGERM 722
F ++ + +
Sbjct: 166 FKKIAKSL 173
Score = 26.6 bits (57), Expect = 2e-15
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
VGKTS++ RF+ DTF T+ F + Y
Sbjct: 21 VGKTSLITRFMYDTFDDHYQATIGIDFLSKTMY 53
>gi|1083775|pir||JC2528 Rab protein 26 - rat
Length = 190
Score = 83.5 bits (203), Expect = 2e-15
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +K + ++G +K+QIWDTAGQERF S+T YYR+A+ + L++ + + SFD I W
Sbjct: 34 DFRNKVLDVDGMKVKVQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWL 93
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIF 701
I D+ + L+GNK D + +KR E A L F TSA N+D F
Sbjct: 94 TEIQEYAQQDVVLMLLGNKVDSTQE-RVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAF 152
Query: 702 LEMGERM 722
+ + +
Sbjct: 153 TAIAKEL 159
>gi|3559768 (U23800) ral [Drosophila melanogaster]
Length = 201
Score = 83.5 bits (203), Expect = 2e-15
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++V++GE +++ I DTAGQE + +I NY+R+ G VFS+ DD SF ++ E I+
Sbjct: 50 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQIL 109
Query: 540 AEVGND--IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
V ND IP L+GNK DL D + + +A + + TSA +N+DK+F ++
Sbjct: 110 -RVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDL 168
>gi|346947|pir||A45384 small molecular weight GTP-binding protein Rab3D - mouse
Length = 219
Score = 83.5 bits (203), Expect = 2e-15
Identities = 54/174 (31%), Positives = 87/174 (49%), Gaps = 8/174 (4%)
Query: 210 PPNPMAAIKQE---RFKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVIN 377
P +P A Q FK+L++G + F F ++ K + +
Sbjct: 8 PASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH 67
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
+ +KLQIWDTAGQER+ +IT YYR A G L++ + + SF + W I ++
Sbjct: 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDN 127
Query: 558 IPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+ L+GNK DL D+ D +R A ++ FF SA ++ N+ ++F ER++
Sbjct: 128 AQVILVGNKCDLEDERVVPAEDGRRL---ADDLGFEFFEASAKEDINVKQVF----ERLV 180
Query: 726 KI 731
I
Sbjct: 181 DI 182
>gi|3859936|gb|AAC72918| (AF081353) GTP-binding protein [Homo sapiens]
Length = 219
Score = 83.5 bits (203), Expect = 2e-15
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G + F F ++ K + + + +KLQIWDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + + SF + W I ++ + L+GNK DL D+
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 603 ----MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
D +R A ++ FF SA +N N+ ++F
Sbjct: 143 RVVPAEDGRRL---ADDLGFEFFEASAKENINVKQVF 176
>gi|730512|sp|P40393|RIC2_ORYSA RAS-RELATED PROTEIN RIC2 >gi|481506|pir||S38741 GTP-binding protein
ric2 - rice >gi|218228|dbj|BAA02904| (D13758)
ras-related GTP binding protein [Oryza sativa]
Length = 217
Score = 83.5 bits (203), Expect = 2e-15
Identities = 44/130 (33%), Positives = 79/130 (59%), Gaps = 2/130 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + ++G+ +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +++W +
Sbjct: 51 FATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLK 110
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +I + L+GNK D L + ++ E K A +L F TSAL++ N++ F
Sbjct: 111 ELRDHTDPNIVVMLVGNKSD-LRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFA 169
Query: 705 EMGERMLKIGHK 740
E+ ++ +I K
Sbjct: 170 EVLTQIYRIVSK 181
>gi|3024529|sp|Q40195|R11E_LOTJA RAS-RELATED PROTEIN RAB11E >gi|1370150|emb|CAA98181| (Z73953)
RAB11E [Lotus japonicus]
Length = 218
Score = 83.5 bits (203), Expect = 2e-15
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K + I+G+ +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +W +
Sbjct: 50 FATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ +I + LIGNK DL D K F K +L F TSAL+ N++
Sbjct: 110 ELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKE---SLYFMETSALEATNVENA 166
Query: 699 FLEMGERMLKIGHK 740
F E+ ++ +I K
Sbjct: 167 FSEVLTQIYRIVSK 180
>gi|2463536|dbj|BAA22522| (D01046) GTP binding protein [Rattus rattus]
Length = 218
Score = 83.5 bits (203), Expect = 2e-15
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++G+++K QIWDTAGQER+ +IT YYR A G LV+ + +++ +++W +
Sbjct: 48 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNIDKIF 701
+ ++I I L+GNK DL E +A +L F TSAL + N+++ F
Sbjct: 108 ELRDHADSNIVILLVGNKSDLRHLRAVCPLTEARAFAERHLSFIETSALDSTNVEEAF 165
>gi|549812|sp|P36586|YPT5_SCHPO YPT1-RELATED PROTEIN 5 >gi|422065|pir||S34729 GTP-binding protein
ypt5 - fission yeast (Schizosaccharomyces pombe)
>gi|396079|emb|CAA80223| (Z22220) ypt5 protein
[Schizosaccharomyces pombe] >gi|2389005|emb|CAB11737|
(Z98981) ras-like rab subfamily protein
[Schizosaccharomyces pombe]
Length = 211
Score = 81.1 bits (197), Expect = 2e-15
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 384 SLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIP 563
S+KL+IWDTAGQER+ S+ YYRNAN +V+ + S + W + + + I
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIV 122
Query: 564 IFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGH 737
I L GNK DL + +++ E A NL FF TSA +N++++F + ++ L +
Sbjct: 123 IALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKK-LPLED 181
Query: 738 KMEKKGLNVNR 770
K+ + VNR
Sbjct: 182 KLNQARGAVNR 192
Score = 22.3 bits (46), Expect = 2e-15
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 275 VGKTSILQRFISDTF 319
VGK+S++ RF+ D F
Sbjct: 25 VGKSSLVLRFVKDQF 39
>gi|439538 (U03614) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 126
Score = 83.1 bits (202), Expect = 2e-15
Identities = 33/81 (40%), Positives = 56/81 (68%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K++VI+ + +K Q+WDTAGQER+ +I +YY+ A+G +VF + +FD +D+W +
Sbjct: 25 FANKQLVIDDKIIKAQLWDTAGQERYRAIISSYYKGASGALIVFDITKQSTFDNVDRWMK 84
Query: 531 GIVAEVGNDIPIFLIGNKYDL 593
+ N+I I L+GNK DL
Sbjct: 85 EVQESTSNEISIILVGNKSDL 105
>gi|3273209|dbj|BAA31150| (AB015237) Rab1C [Dictyostelium discoideum]
Length = 201
Score = 83.1 bits (202), Expect = 2e-15
Identities = 43/127 (33%), Positives = 73/127 (56%), Gaps = 1/127 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + I ++G+ +KLQIWDTAGQERF +IT +YYR A+G+ +V+ + SF+ I +W
Sbjct: 69 DFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWL 128
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ + ++GNK DL D K + A +N+ TSA ++ ID+ F+
Sbjct: 129 IDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFI 188
Query: 705 EMGERMLK 728
++ + K
Sbjct: 189 KLASDIKK 196
>gi|3309068 (AF072935) small GTP-binding protein rab5 [Rattus norvegicus]
Length = 215
Score = 83.1 bits (202), Expect = 2e-15
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P P K +FK+++LGE + + + + ++ + ++ +
Sbjct: 9 PNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT 68
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQER+HS+ YYR A +V+ + ++ SF W + + + +I I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFSRAKNWVKELQRQASPNIVI 128
Query: 567 FLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL + D + ++ A + +L F TSA + N+++IF+ + +++ K
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183
>gi|541979|pir||S41431 guanine nucleotide regulatory protein - fava bean
>gi|303744|dbj|BAA02113| (D12545) GTP-binding protein
[Pisum sativum] >gi|452361|emb|CAA82709| (Z29592)
guanine nucleotide regulatory protein [Vicia faba]
>gi|738937|prf||2001457E GTP-binding protein [Pisum
sativum] >gi|1098295|prf||2115367C small GTP-binding
protein [Vicia faba]
Length = 217
Score = 83.1 bits (202), Expect = 2e-15
Identities = 46/134 (34%), Positives = 78/134 (57%), Gaps = 4/134 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + ++ + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +D+W +
Sbjct: 50 FATRTLNVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ ++I + L+GNK DL D K + K +L F TSAL+ N++
Sbjct: 110 ELRNHTDSNIVVMLVGNKADLRHLVAVSTEDGKSYAEKE---SLYFMETSALEATNVENA 166
Query: 699 FLEMGERMLKIGHKMEKK 752
F E+ + +I H + KK
Sbjct: 167 FAEV---LTQIYHIVSKK 181
>gi|2313039|dbj|BAA21708| (D84315) rab11 [Drosophila melanogaster]
Length = 214
Score = 83.1 bits (202), Expect = 2e-15
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++G+++K QIWDTAGQER+ +IT YYR A G LV+ + +++ +++W
Sbjct: 48 FATRSIEVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLR 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ +I I L+GNK D L + + E K A L F TSAL + N++ F
Sbjct: 108 ELRDHADQNIVIMLVGNKSD-LRHLRSVPTDEAKLFAERNGLSFIETSALDSTNVETAF 165
>gi|4538902|emb|CAB39639| (AL049482) rab7-like protein [Arabidopsis thaliana]
Length = 208
Score = 83.1 bits (202), Expect = 2e-15
Identities = 53/175 (30%), Positives = 93/175 (52%), Gaps = 11/175 (6%)
Query: 222 MAAIKQERFKILILGEXM*ER---LVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLK 392
MA ++ K+++LG+ + + F ++ +KE+ I + +
Sbjct: 1 MATRRRTLLKVIVLGDSGVGKTSLMNHFRYVHKKFSMQYKATIGADFVTKELQIGEKLVT 60
Query: 393 LQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDI 560
LQIWDTAGQERF S+ +YR A+ LV+ + RSFD ++ W+E + +
Sbjct: 61 LQIWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQASPSDPKTF 120
Query: 561 PIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
P ++GNK D+ ++D K + A+N N+ +F TSA + N+D+ FL + + L
Sbjct: 121 PFIVLGNKIDVDGGSSRVVSDKKAADWCASNGNIPYFETSAKDDFNVDEAFLTIAKTALA 180
Query: 729 IGHKME 746
H+ +
Sbjct: 181 NEHEQD 186
>gi|560504|emb|CAA82710| (Z29593) guanine nucleotide regulatory protein [Vicia faba]
>gi|1098296|prf||2115367D small GTP-binding protein
[Vicia faba]
Length = 223
Score = 83.1 bits (202), Expect = 2e-15
Identities = 45/117 (38%), Positives = 67/117 (56%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++++ ING+ +K QIWDTAGQERF ++T YYR A G LV+ + ++FD I +W
Sbjct: 51 FQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLN 110
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ ++ L+GNK D L D ++ E K A L F TSAL + N+ F
Sbjct: 111 ELHTHSDMNVVTILVGNKSD-LKDAREVPTPEGKALAEAQGLFFMETSALDSSNVVSAF 168
>gi|131835|sp|P11234|RALB_HUMAN RAS-RELATED PROTEIN RAL-B >gi|68955|pir||TVHUAB transforming
protein ralB - human >gi|35848|emb|CAA33119| (X15015)
RAL B polypeptide (AA 1-206) [Homo sapiens] >gi|190852
(M35416) GTP-binding protein (RALB) [Homo sapiens]
>gi|4506405|ref|NP_002872.1|pRALB| v-ral simian leukemia
viral oncogene homolog B (ras related; GTP binding
protein)
Length = 206
Score = 83.1 bits (202), Expect = 2e-15
Identities = 46/141 (32%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++V++GE +++ I DTAGQE + +I NY+R+ G LVFS+ + SF ++ E I
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 112
Query: 537 -VAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
V + IP+ ++GNK DL + ++ +KA +++ TSA N+DK+F ++
Sbjct: 113 RVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 172
Query: 711 GE--RMLKIGHKMEKKGLNVNRRKRN 782
R K+ +K G ++ K++
Sbjct: 173 MREIRTKKMSENKDKNGKKSSKNKKS 198
>gi|4490740|emb|CAB38902| (AL035708) small GTP-binding protein-like [Arabidopsis thaliana]
Length = 214
Score = 76.5 bits (185), Expect = 3e-15
Identities = 41/118 (34%), Positives = 70/118 (58%), Gaps = 2/118 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + + +++LQ+WDTAGQERF S+ +Y R+++ +V+ + + ++F KW
Sbjct: 45 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWI 104
Query: 528 EGIVAEVG-NDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
E + E G +++ I L+GNK DL++ I E K + F TSA +N NI +F
Sbjct: 105 EDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALF 164
Score = 26.6 bits (57), Expect = 3e-15
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
+VGKTSI+ RF+ D F + T+ F + Y
Sbjct: 19 SVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMY 52
>gi|2129605|pir||S71233 GTP-binding protein 2 - Arabidopsis thaliana
>gi|2129702|pir||S71585 Rab2 homolog GTP-binding protein
ATGB2 - Arabidopsis thaliana >gi|1184983 (U46925) ATGB2
[Arabidopsis thaliana] >gi|3805852|emb|CAA21472|
(AL031986) GTP-binding protein GB2 [Arabidopsis
thaliana]
Length = 211
Score = 82.7 bits (201), Expect = 3e-15
Identities = 44/126 (34%), Positives = 69/126 (53%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + ++G +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMVTVDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I LIGNK DL K + A L F SA +N+++ F+E
Sbjct: 103 DARQHANPNMSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIE 162
Query: 708 MGERMLK 728
++L+
Sbjct: 163 TAAKILQ 169
>gi|3024516|sp|O04486|RB1C_ARATH RAS-RELATED PROTEIN RAB11C >gi|2160157 (AC000132) Strong similarity
to A. thaliana ara-2 (gb|ATHARA2). ESTs
gb|ATTS2483,gb|ATTS2484,gb|AA042159 come from this gene.
[Arabidopsis thaliana] >gi|2231303 (U74669) ras-related
small GTPase [Arabidopsis thaliana]
Length = 217
Score = 82.7 bits (201), Expect = 3e-15
Identities = 47/144 (32%), Positives = 81/144 (55%), Gaps = 5/144 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + + G ++K QIWDTAGQER+ +IT YYR A G LV+ + +F+ + +W +
Sbjct: 49 FATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDK 695
+ ++I I LIGNK DL ++ T+ A L F TSAL+ N++K
Sbjct: 109 ELRDHADSNIVIMLIGNKTDL----KHLRAVATEDAQSYAEKEGLSFIETSALEALNVEK 164
Query: 696 IFLEMGERMLKIGHKMEKKGLNVNRRKRN 782
F + + +I + KK ++ ++ N
Sbjct: 165 AFQTILSEVYRI---ISKKSISSDQTTAN 190
>gi|1370152|emb|CAA98182| (Z73954) RAB11F [Lotus japonicus]
Length = 218
Score = 82.7 bits (201), Expect = 3e-15
Identities = 49/120 (40%), Positives = 71/120 (58%), Gaps = 2/120 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++ + I + + +K QIWDTAGQERF +IT +YYR A G LV+ + +F + KW
Sbjct: 50 FAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGPMLVYDITRRPTFMNVIKWLH 109
Query: 531 GIVAEVGN-DIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ E GN D+ + L+ NK DL+ + + E A L F TSALQN N+++ FL
Sbjct: 110 EL-REFGNEDMVVVLVANKSDLVQSREVEKEEGEEFAEIEGLCFMETSALQNLNVEEAFL 168
Query: 705 EM 710
EM
Sbjct: 169 EM 170
>gi|3024526|sp|Q39222|RB1B_ARATH RAS-RELATED PROTEIN RAB11 >gi|2118459|pir||S59942 small GTP-binding
protein Rab11 - Arabidopsis thaliana >gi|451860 (L18883)
small GTP-binding protein [Arabidopsis thaliana]
Length = 216
Score = 82.7 bits (201), Expect = 3e-15
Identities = 43/132 (32%), Positives = 78/132 (58%), Gaps = 1/132 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + ++G+ +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +D+W +
Sbjct: 50 FATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ +I + L+GNK DL + + ++ A +L F TSAL+ N++ F E
Sbjct: 110 ELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAE 169
Query: 708 MGERMLKIGHKME 746
+ ++ +I K +
Sbjct: 170 VLTQIYRITSKKQ 182
>gi|2623647 (AF030184) rab-like GTP-binding protein [Entamoeba histolytica]
Length = 219
Score = 78.8 bits (191), Expect = 3e-15
Identities = 41/129 (31%), Positives = 76/129 (58%), Gaps = 18/129 (13%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K + ++G+ +LQ+WDTAGQE++HS+ + Y+++ G+ LVF + SFD W +
Sbjct: 65 KSVNLDGKMYQLQLWDTAGQEKYHSLVRLYFKDIKGVLLVFQIDRQESFDHCKDWLDLFY 124
Query: 540 AEVGNDI--PIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDK---- 695
+ + + P+ L+GNK DL+ + + + + L + TS+ +N N+ +
Sbjct: 125 SSISSGFTPPVLLVGNKCDLIGSSTRVSKESVDRFVSENGLEYIETSSKENTNVQEAFSQ 184
Query: 696 ----------IFLEMGERMLKIGHKME 746
IF++ GE +KI + E
Sbjct: 185 LLRSIINLKPIFVDPGEEEVKITQQTE 211
Score = 23.9 bits (50), Expect = 3e-15
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 275 VGKTSILQRFISDTFT 322
VGKT+++QRF T+T
Sbjct: 36 VGKTALIQRFCFGTYT 51
>gi|4567198|gb|AAD23614|AC007168_5 (AC007168) putative GTP-binding protein [Arabidopsis thaliana]
Length = 207
Score = 76.1 bits (184), Expect = 3e-15
Identities = 40/118 (33%), Positives = 67/118 (55%), Gaps = 1/118 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + + +++LQ+WDTAGQERF S+ +Y R+++ +V+ + + SF KW
Sbjct: 45 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWI 104
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
E + E D+ I L+GNK DL++ I+ ++K + F TSA NI +F
Sbjct: 105 EEVRNERAGDVIIVLVGNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLF 163
Score = 26.6 bits (57), Expect = 3e-15
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
+VGKTSI+ RF+ D F + T+ F + Y
Sbjct: 19 SVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMY 52
>gi|131794|sp|P18066|RB5A_CANFA RAS-RELATED PROTEIN RAB-5A >gi|108110|pir||A30413 GTP-binding
protein Rab5 - dog >gi|164056 (M35520) GTP-binding
protein (rab5) [Canis familiaris]
Length = 215
Score = 82.3 bits (200), Expect = 4e-15
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P P K +FK+++LGE + + + + ++ + ++ +
Sbjct: 9 PNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT 68
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQER+HS+ YYR A +V+ + ++ SF W + + + +I I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 567 FLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL + D + ++ A + +L F TSA + N+++IF+ + +++ K
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183
>gi|1346958|sp|P20339|RB5A_HUMAN RAS-RELATED PROTEIN RAB-5A
Length = 215
Score = 82.3 bits (200), Expect = 4e-15
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P P K +FK+++LGE + + + + ++ + ++ +
Sbjct: 9 PNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT 68
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQER+HS+ YYR A +V+ + ++ SF W + + + +I I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 567 FLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL + D + ++ A + +L F TSA + N+++IF+ + +++ K
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183
>gi|132521|sp|P25766|RGP1_ORYSA RAS-RELATED PROTEIN RGP1 (GTP-BINDING REGULATORY PROTEIN RGP1)
>gi|100684|pir||S16554 GTP-binding protein rgp1 - rice
>gi|20356|emb|CAA41966| (X59276) GTP-binding protein
[Oryza sativa] >gi|228209|prf||1718315A GTP-binding
protein [Oryza sativa]
Length = 226
Score = 82.3 bits (200), Expect = 4e-15
Identities = 50/139 (35%), Positives = 77/139 (54%), Gaps = 4/139 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I+ ++K Q DTAGQER+ ++T YYR A G LV+ + +SFD + +W E
Sbjct: 55 FQTRTLHIDARTVKAQTRDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLE 114
Query: 531 GIVAEVGNDIPIFLIGNKYDL----LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ +I I LIGNK DL + D K F A NL F TSAL++ N++
Sbjct: 115 ELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEF---AERENLFFMETSALESTNLENA 171
Query: 699 FLEMGERMLKIGHKMEKKGLNVN 767
F+ + + +I + KK L N
Sbjct: 172 FMTVLTEIYRI---VSKKNLVAN 191
>gi|1279542|emb|CAA95859| (Z71276) small GTPase [Mangifera indica]
Length = 217
Score = 82.3 bits (200), Expect = 4e-15
Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + ++G+ +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +++W
Sbjct: 50 FATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLR 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNM-----NLRFFPTSALQNKNIDK 695
+ +I + LIGNK D+ + T+ N+ +L F TSAL+ N+D
Sbjct: 110 ELRDHTDPNIVVMLIGNK----SDLRHLVAVSTEDGNLLAERESLSFMETSALEATNVDN 165
Query: 696 IFLEM 710
F E+
Sbjct: 166 AFAEV 170
>gi|3880506|emb|CAB07678| (Z93391) predicted using Genefinder; Similarity to Human
RAS-related protein RAB11 (SW:P24410) [Caenorhabditis
elegans]
Length = 212
Score = 82.3 bits (200), Expect = 4e-15
Identities = 43/127 (33%), Positives = 73/127 (56%), Gaps = 2/127 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K I + G+++K+QIWDTAG ERF +YYR A G LV+ + ++++ +++W +
Sbjct: 59 FATKIISVEGKAVKVQIWDTAGMERFRCGASSYYRGALGALLVYDISKHKTYESVEQWLK 118
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ DI I L+GNK DL + + E K A ++ F TSAL N N++ F
Sbjct: 119 VLRDHANEDIVITLVGNKSDL---SHAVPTDEAKIYAERNHISFIETSALDNTNVEAAFT 175
Query: 705 EMGERMLKI 731
+ + K+
Sbjct: 176 NIVTEIYKL 184
>gi|2723477|dbj|BAA24074| (D89824) GTP-binding protein [Arabidopsis thaliana]
Length = 210
Score = 81.9 bits (199), Expect = 5e-15
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 246 FKILILGEXM*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQER 425
FKIL++G+ + ++ K++ + G+ LKL IWDTAGQER
Sbjct: 14 FKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 73
Query: 426 FHSITKNYYRNANGIFLVFSMIDDRSF-DCIDKWYEGI-VAEVGNDIPIFLIGNKYDLLD 599
F ++T +YYR A GI LV+ + +F + +D W + I + + L+GNK D +
Sbjct: 74 FRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVRMLVGNKVD-RE 132
Query: 600 DMNDIKRFE--TKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVNR 770
+ R E A +N F SA +N+++ F E+ +++++ +E+ V R
Sbjct: 133 SERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSSAVKR 191
>gi|420272|pir||E42148 GTP-binding protein rab14 - rat
Length = 215
Score = 81.9 bits (199), Expect = 5e-15
Identities = 47/139 (33%), Positives = 76/139 (53%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I ++G+ +KLQIWDTAGQERF ++T++YYR A G +V+ + +++ + W
Sbjct: 48 FGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLT 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ I LIGNK D L+ D+ E K A L F SA +N++ FL
Sbjct: 108 DARNLTNPNTVIILIGNKAD-LEAQRDVTTEEAKQFAEENGLLFLEASAKTGENVEDAFL 166
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
E + KI ++ L++N
Sbjct: 167 EAAK---KIYQNIQDGSLDLN 184
>gi|450635 (L27417) GTP binding protein [Glycine max]
Length = 218
Score = 81.9 bits (199), Expect = 5e-15
Identities = 49/155 (31%), Positives = 86/155 (54%), Gaps = 18/155 (11%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+L++G+ + + + ++ + + +G+++KLQIWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
Query: 423 RFHSITKNYYRNANGIFLVFSMID-DRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL-- 593
RF +IT +YYR A+GI +V+ + D + SF+ + +W I +++ L+GNK DL
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDGEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLEA 128
Query: 594 -----------LDDMNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIFLEM 710
L+ + ET A + + F TSA N+++ F+ M
Sbjct: 129 NRAVSNIETADLEANRAVSNIETAKAFADGIGIPFIETSAKDATNVEQAFMAM 181
>gi|131805|sp|P24410|R11A_HUMAN RAS-RELATED PROTEIN RAB-11A (RAB-11) (24KG) (YL8)
>gi|108105|pir||E36364 GTP-binding protein Rab11 - dog
>gi|111292|pir||JN0056 GTP-binding protein rab11 - rat
>gi|631186|pir||S47169 GTP-binding protein Rab11 - human
>gi|917|emb|CAA39799| (X56388) rab11 [Canis familiaris]
>gi|35889|emb|CAA37300| (X53143) ras-like protein (AA
1-216) [Homo sapiens] >gi|206567 (M75153) ras p21-like
small GTP-binding protein [Rattus norvegicus] >gi|310067
(L19260) tubulovesicle-associated protein [Oryctolagus
cuniculus] >gi|505541|emb|CAA40064| (X56740) H rab11
small GTP binding protein [Homo sapiens] >gi|2149975
(AF000231) rab11a [Homo sapiens]
>gi|1089909|prf||2018147A GTP-binding protein rab11
[Oryctolagus cuniculus]
Length = 216
Score = 81.9 bits (199), Expect = 5e-15
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++G+++K QIWDTAGQER+ +IT YYR A G LV+ + +++ +++W +
Sbjct: 48 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ ++I I L+GNK D L + + E + A L F TSAL + N++ F
Sbjct: 108 ELRDHADSNIVIMLVGNKSD-LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165
>gi|3024506|sp|Q40523|R11A_TOBAC RAS-RELATED PROTEIN RAB11A >gi|623582 (L29271) Nt-Rab11a gene
product [Nicotiana tabacum]
Length = 216
Score = 81.9 bits (199), Expect = 5e-15
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + + G+++K QIWDTAGQER+ +IT YYR A G L + + ++FD + +W
Sbjct: 49 FATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLR 108
Query: 531 GIVAEVGNDIPIFLIGNKYDL-----LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ ++I I L GNK DL + + +D + L F TSAL+ N+DK
Sbjct: 109 ELRDHRDSNIVIILAGNKSDLKHLRAVSEQDD----QALVKKEGLSFLETSALEALNVDK 164
Query: 696 IFLEMGERMLKIGHKMEKKGL 758
F + + I H + KK L
Sbjct: 165 AFQTI---LTDIYHIISKKAL 182
>gi|549811|sp|P36863|YPT4_VOLCA GTP-BINDING PROTEIN YPTV4 (RAB2 HOMOLOG) >gi|486946|pir||S36367
GTP-binding protein yptV4 - Volvox carteri >gi|409166
(L08130) GTP-binding protein [Volvox carteri]
Length = 213
Score = 81.9 bits (199), Expect = 5e-15
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I LIGNK DL + E A L F TSA N+++ F+
Sbjct: 103 DARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFIN 162
Query: 708 MGERMLK 728
+ + K
Sbjct: 163 TAKEIYK 169
>gi|2500074|sp|Q39570|YPT4_CHLRE GTP-BINDING PROTEIN YPTC4 >gi|1363474|pir||JC4106 membrane vesicle
transport protein ypt C4 - Chlamydomonas reinhardtii
>gi|806722 (U13167) YptC4 [Chlamydomonas reinhardtii]
Length = 213
Score = 81.9 bits (199), Expect = 5e-15
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+G+ +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I LIGNK DL + E A L F TSA N+++ F+
Sbjct: 103 DARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFIN 162
Query: 708 MGERMLK 728
+ + K
Sbjct: 163 TAKEIYK 169
>gi|2342660 (AF014120) GTP-binding protein sprab3 [Strongylocentrotus
purpuratus]
Length = 213
Score = 81.9 bits (199), Expect = 5e-15
Identities = 50/162 (30%), Positives = 80/162 (48%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + +KLQIWDTA QE
Sbjct: 17 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRQDKRVKLQIWDTADQE 76
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R +IT YYR A G L++ + + SF+ + W I ++ + L+GNK D+ D+
Sbjct: 77 RHRTITTAYYRGAMGFILMYDVTNKESFNSVQDWGTQIKTYSWDNAQVILVGNKCDMEDE 136
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ + + A + L FF TSA +N N+ + F ER++ I
Sbjct: 137 RVISTDKGKQLADQLGLEFFETSAKENINVKQTF----ERLVDI 176
>gi|3955067|emb|CAA76143| (Y16259) Ral B protein [Xenopus laevis]
Length = 206
Score = 81.9 bits (199), Expect = 5e-15
Identities = 48/140 (34%), Positives = 80/140 (56%), Gaps = 6/140 (4%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++V++GE +++ I DTAGQE + +I NY+R+ G LVFS+ + SF ++ E I
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 112
Query: 537 -VAEVGNDIPIFLIGNKYDLLDDMNDIKRFET--KATNMNLRFFPTSALQNKNIDKIFLE 707
V + IP+ ++GNK D L+D + E KA +++ TSA N+DK+F +
Sbjct: 113 RVKAEEDKIPLLIVGNKSD-LEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFD 171
Query: 708 MGE--RMLKIGHKMEKKGLNVNRRKR 779
+ R K+ +K G + K+
Sbjct: 172 LMREIRTKKMSENKDKNGKKSGKSKK 197
>gi|464559|sp|P35287|RB14_RAT RAS-RELATED PROTEIN RAB-14 >gi|206535 (M83680) RAB14 [Rattus
norvegicus]
Length = 215
Score = 81.5 bits (198), Expect = 6e-15
Identities = 47/139 (33%), Positives = 76/139 (53%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I ++G+ +KLQIWDTAGQERF ++T++YYR A G +V+ + +++ + W
Sbjct: 48 FGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLT 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ I LIGNK D L+ D+ E K A L F SA +N++ FL
Sbjct: 108 DARNLTNPNTVIILIGNKAD-LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 166
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
E + KI ++ L++N
Sbjct: 167 EAAK---KIYQNIQDGSLDLN 184
>gi|2313041|dbj|BAA21709| (D84316) rab14 [Drosophila melanogaster]
Length = 215
Score = 81.5 bits (198), Expect = 6e-15
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I ++ + +KLQIWDTAGQERF ++T++YYR A G +V+ + +++ + W
Sbjct: 48 FGTRIIEVDDKKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLT 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
IFLIGNK D L+ ++ E K A L F SA+ +N+++ FL
Sbjct: 108 DTRNLTNPSTVIFLIGNKSD-LESTREVTYEEAKEFADENGLMFLEASAMTGQNVEEAFL 166
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
E KI +++ L++N
Sbjct: 167 ETAR---KIYQNIQEGRLDLN 184
>gi|2088715 (AF003139) strong similarity to the YPT1 sub-family of RAS proteins
[Caenorhabditis elegans]
Length = 211
Score = 81.5 bits (198), Expect = 6e-15
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I + G+++K QIWDTAGQER+ +IT YYR A G LV+ + +++ +++W +
Sbjct: 48 FATRSISVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ +I I L+GNK D L + + E K A L F TSAL + N++ F
Sbjct: 108 ELRDHADQNIVIMLVGNKSD-LRHLRAVPTDEAKIYAERNQLSFIETSALDSTNVEAAF 165
>gi|3024504|sp|Q40521|R11B_TOBAC RAS-RELATED PROTEIN RAB11B >gi|623578 (L29269) putative [Nicotiana
tabacum]
Length = 217
Score = 81.5 bits (198), Expect = 6e-15
Identities = 44/127 (34%), Positives = 73/127 (56%), Gaps = 4/127 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++ + +K QIWDTAGQER+ +IT YYR A G +V+ + +F+ +++W +
Sbjct: 51 FATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLK 110
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ +I I L+GNK DL D K F A N F TSAL++ N++
Sbjct: 111 ELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAF---AERENTFFMETSALESLNVENA 167
Query: 699 FLEMGERMLKI 731
F E+ + K+
Sbjct: 168 FTEVLTEIYKV 178
>gi|129325|sp|P10949|RB3C_BOVIN RAS-RELATED PROTEIN RAB-3C (SMG P25C) >gi|162764 (M19887)
GTP-binding protein [Bos taurus]
Length = 218
Score = 81.5 bits (198), Expect = 6e-15
Identities = 50/162 (30%), Positives = 80/162 (48%), Gaps = 2/162 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + N + +KLQIWDTAGQE
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W N + L+GNK D+ D+
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSLNQTYSWDN-AQVILVGNKCDMEDE 141
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
+ + + ++ FF TSA N N+ + F ER++ I
Sbjct: 142 RVISSEEGQHLGEHLGFEFFETSAKDNINVKQTF----ERLVDI 181
>gi|623584 (L29272) putative [Nicotiana tabacum]
Length = 209
Score = 81.5 bits (198), Expect = 6e-15
Identities = 43/117 (36%), Positives = 68/117 (57%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I+G+ +K QIWDTAGQERF ++T YYR A G +V+ + +FD I +W +
Sbjct: 41 FQTQTLEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAFGALVVYDITRRTTFDSIPRWLD 100
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ + L+GNK D LD++ + E K A + + F TSAL N++K F
Sbjct: 101 ELKTHSDTTVARMLVGNKCD-LDNIRAVSVEEGKSLAESEGMFFMETSALDATNVNKAF 158
>gi|114086|sp|P28185|ARA2_ARATH RAS-RELATED PROTEIN ARA-2 >gi|320559|pir||JS0639 GTP-binding
protein ara-2 - Arabidopsis thaliana
>gi|217835|dbj|BAA00829| (D01024) small GTP-binding
protein [Arabidopsis thaliana]
Length = 216
Score = 81.5 bits (198), Expect = 6e-15
Identities = 48/135 (35%), Positives = 73/135 (53%), Gaps = 2/135 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K + G+ +K QIWDTAGQER+ +IT YYR A G L++ + +F+ +W
Sbjct: 50 FATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLR 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +I + LIGNK D L + +K E K A +L F TSAL N++ F
Sbjct: 110 ELRGHTDPNIVVMLIGNKCD-LRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFT 168
Query: 705 EMGERMLKIGHKMEKKG 755
E+ ++ KI K G
Sbjct: 169 EVLTQIHKIVSKRSVDG 185
>gi|466271 (U05227) Rar protein [Homo sapiens]
Length = 278
Score = 81.1 bits (197), Expect = 8e-15
Identities = 46/134 (34%), Positives = 78/134 (57%), Gaps = 1/134 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
+Y + I+++G +KLQ+WDT+GQ RF +I ++Y R A G+ LV+ + + SFD ID+W
Sbjct: 50 DYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWI 109
Query: 528 EGIVAEVGNDIPIFLIGNKYDL-LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ I E +P L+GN+ L ++ + A + + FF S L N NI + F
Sbjct: 110 KEI-DEHAPGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFT 168
Query: 705 EMGERMLKIGHKMEK 749
E+ R++ + H M++
Sbjct: 169 ELA-RIVLLRHGMDR 182
>gi|549813|sp|P36864|YPT5_VOLCA GTP-BINDING PROTEIN YPTV5 >gi|486947|pir||S36368 GTP-binding
protein yptV5 - Volvox carteri >gi|409168 (L08131)
GTP-binding protein [Volvox carteri]
Length = 205
Score = 81.1 bits (197), Expect = 8e-15
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M+ K+ KI+ILG+ + N ++ +KEI ++ + + +Q
Sbjct: 1 MSTKKRRVLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + + +SFD +D W + + + G ++ P
Sbjct: 61 IWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETK---ATNMNLRFFPTSALQNKNIDKIF 701
++GNK D + + + K A+ ++ +F TSA ++ N++ F
Sbjct: 121 VVLGNKIDEVGVNRQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAF 168
>gi|1370182|emb|CAA98168| (Z73940) RAB7A [Lotus japonicus]
Length = 205
Score = 81.1 bits (197), Expect = 8e-15
Identities = 49/133 (36%), Positives = 76/133 (56%), Gaps = 9/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ I+ + LQIWDTAGQERF S+ +YR A+ LV+ + +SFD +D W+
Sbjct: 44 DFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWH 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETKATNM-----NLRFFPTSALQN 680
E + + P L+GNK D +D N E KA + N+ +F TSA ++
Sbjct: 104 EEFLKQANPSDPRTFPFILLGNKID-IDGGNSRVVSEKKAKDWCASKGNIPYFETSAKED 162
Query: 681 KNIDKIFLEMGERMLKIGHKME 746
N+D FL + + L H +
Sbjct: 163 YNVDAAFLCIAKTALANEHDQD 184
>gi|2245075|emb|CAB10497| (Z97343) GTP-binding RAB2A protein [Arabidopsis thaliana]
Length = 205
Score = 81.1 bits (197), Expect = 8e-15
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 243 RFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQ 419
RFK +I+G+ + + + + +K I I+ + +KLQIWDTAGQ
Sbjct: 6 RFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIWDTAGQ 65
Query: 420 ERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLD 599
E F S+T++YYR G LV+ + +F+ + W E ++ LIGNK DL D
Sbjct: 66 ESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNKCDLED 125
Query: 600 DMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
+ E A L F SA N+++ F+E + K
Sbjct: 126 KRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYK 169
>gi|3915842|sp|Q96283|RB1A_ARATH RAS-RELATED PROTEIN RAB11A >gi|2598229|emb|CAA70112| (Y08904) Rab11
protein [Arabidopsis thaliana]
Length = 217
Score = 81.1 bits (197), Expect = 8e-15
Identities = 46/136 (33%), Positives = 79/136 (57%), Gaps = 2/136 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + G+++K QIWDTAGQER+ +IT YYR A G LV+ + ++FD + +W
Sbjct: 49 FATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLR 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ ++I I + GNK D L+ + + + ++ A L F TSAL+ N++K F
Sbjct: 109 ELRDHADSNIVIMMAGNKSD-LNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQ 167
Query: 705 EMGERMLKIGHKMEKKGL 758
+ + +I H + KK L
Sbjct: 168 TI---LGEIYHIISKKAL 182
>gi|1730881|sp|P51996|YP32_YEAST GTP-BINDING PROTEIN YPT32/YPT11 >gi|1362494|pir||S58514 YPT32
protein - yeast (Saccharomyces cerevisiae)
>gi|927543|emb|CAA51355| (X72834) Ypt32p [Saccharomyces
cerevisiae] >gi|1322850|emb|CAA96926| (Z72732) ORF
YGL210w [Saccharomyces cerevisiae] >gi|1655723 (U33754)
ras-like GTPase [Saccharomyces cerevisiae]
Length = 222
Score = 81.1 bits (197), Expect = 8e-15
Identities = 46/144 (31%), Positives = 78/144 (53%), Gaps = 4/144 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I + + +K QIWDTAGQER+ +IT YYR A G +V+ + S++ + W
Sbjct: 50 FATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLT 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +++ + LIGNK DL + + E K A + F TSAL + N+DK F
Sbjct: 110 ELRENADDNVAVGLIGNKSDLA-HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFR 168
Query: 705 EMGERMLKI--GHKMEKKGLNVNRRKRN 782
E+ + ++ H+++ G N N
Sbjct: 169 ELIVAIFQMVSKHQVDLSGSGTNNMGSN 196
>gi|548672|sp|P36860|RALB_RAT RAS-RELATED PROTEIN RAL-B >gi|484387|pir||JN0623 GTP-binding
protein ral B - rat >gi|310212 (L19699) GTP-binding
protein [Rattus norvegicus]
Length = 206
Score = 81.1 bits (197), Expect = 8e-15
Identities = 46/141 (32%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++V++GE +++ I DTAGQE + +I NY+R+ G LVFS+ + SF ++ E I
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 112
Query: 537 -VAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
V + IP+ ++GNK DL + ++ KA +++ TSA N+DK+F ++
Sbjct: 113 RVKAEEDKIPLLVVGNKSDLEERRQVPVEEARGKAEEWGVQYVETSAKTRANVDKVFFDL 172
Query: 711 GE--RMLKIGHKMEKKGLNVNRRKRN 782
R K+ +K G + K++
Sbjct: 173 MREIRAKKMSENKDKNGRKSGKSKKS 198
>gi|420621|pir||S34138 transforming protein (K-ras) - Kirsten murine sarcoma virus
Length = 188
Score = 80.8 bits (196), Expect = 1e-14
Identities = 46/140 (32%), Positives = 73/140 (51%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIHGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ R
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSR 182
>gi|1172844|sp|P46203|RASL_RAT TRANSFORMING PROTEIN P21/K-RAS 2B >gi|2118461|pir||I58402
transforming protein K-ras - rat >gi|495534 (U09793) p21
[Rattus norvegicus]
Length = 188
Score = 80.8 bits (196), Expect = 1e-14
Identities = 46/140 (32%), Positives = 73/140 (51%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ R
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSR 182
>gi|131880|sp|P08643|RASL_MOUSE TRANSFORMING PROTEIN P21/K-RAS 2B >gi|1213018|emb|CAA26295|
(X02452) k-ras cellular oncogene [Mus musculus]
Length = 188
Score = 80.8 bits (196), Expect = 1e-14
Identities = 46/140 (32%), Positives = 73/140 (51%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ R
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSR 182
>gi|939930|emb|CAA80675| (Z23152) proto-oncogene protein [Kirsten murine sarcoma virus]
Length = 188
Score = 80.8 bits (196), Expect = 1e-14
Identities = 46/140 (32%), Positives = 73/140 (51%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ R
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSR 182
>gi|190850 (M29893) GTP-binding protein (ral) [Homo sapiens]
Length = 209
Score = 80.8 bits (196), Expect = 1e-14
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++V++GE +++ I DTAGQE + +I NY+R+ G VFS+ + SF + E I+
Sbjct: 56 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 115
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
+ ++P L+GNK DL D ++ + +A N+ + TSA N+DK+F ++
Sbjct: 116 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 175
Query: 714 E--RMLKIGHKMEKKG 755
R K+ EK G
Sbjct: 176 REIRARKMEDSKEKNG 191
>gi|131834|sp|P11233|RALA_HUMAN RAS-RELATED PROTEIN RAL-A >gi|68954|pir||TVHUAA transforming
protein ralA - human >gi|35846|emb|CAA33118| (X15014)
RAL A polypeptide (AA 1-206) [Homo sapiens] >gi|3845418
(AC004837) transforming protein ralA [Homo sapiens]
Length = 206
Score = 80.8 bits (196), Expect = 1e-14
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++V++GE +++ I DTAGQE + +I NY+R+ G VFS+ + SF + E I+
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
+ ++P L+GNK DL D ++ + +A N+ + TSA N+DK+F ++
Sbjct: 113 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
Query: 714 E--RMLKIGHKMEKKG 755
R K+ EK G
Sbjct: 173 REIRARKMEDSKEKNG 188
>gi|131836|sp|P05810|RALA_RAT RAS-RELATED PROTEIN RAL-A >gi|68953|pir||TVCJRA transforming
protein ral - cotton-top tamarin >gi|484386|pir||JN0622
GTP-binding protein ral A - rat >gi|38257|emb|CAA27859|
(X04328) ral product (AA 1-206) [Saguinus oedipus]
>gi|310210 (L19698) GTP-binding protein [Rattus
norvegicus] >gi|1107742|emb|CAA88488| (Z48587) ral-A
[Mus musculus]
Length = 206
Score = 80.8 bits (196), Expect = 1e-14
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++V++GE +++ I DTAGQE + +I NY+R+ G VFS+ + SF + E I+
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
+ ++P L+GNK DL D ++ + +A N+ + TSA N+DK+F ++
Sbjct: 113 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 172
Query: 714 E--RMLKIGHKMEKKG 755
R K+ EK G
Sbjct: 173 REIRARKMEDSKEKNG 188
>gi|2623643 (AF030183) GTP-binding protein [Entamoeba histolytica]
Length = 206
Score = 80.8 bits (196), Expect = 1e-14
Identities = 42/117 (35%), Positives = 65/117 (54%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I G+ ++ QIWDTAGQER+ +IT YYR A G +V+ + + +F I++W
Sbjct: 45 FATRSIQHEGKVIRAQIWDTAGQERYRAITNAYYRGAVGALVVYDITKENTFKSIERWLS 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ I I +IGNK DL +++ K NL FF TSAL N++ F
Sbjct: 105 ELKDNADPKIVIMIIGNKADLA-QTREVEEATAKEFCQKQNLFFFETSALDGTNVETAF 162
>gi|542218|pir||A47733 GTP-binding protein ypt5 - fission yeast (Schizosaccharomyces
pombe)
Length = 210
Score = 78.4 bits (190), Expect = 1e-14
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 384 SLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIP 563
S+KL+IWDTAGQER+ S+ YYRNAN +V+ I S + W + + + I
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYD-ITQASLEKAKSWIKELQRQAPEGIV 121
Query: 564 IFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGH 737
I L GNK DL + +++ E A NL FF TSA +N++++F + ++ L +
Sbjct: 122 IALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKK-LPLED 180
Query: 738 KMEKKGLNVNR 770
K+ + VNR
Sbjct: 181 KLNQARGAVNR 191
Score = 22.3 bits (46), Expect = 1e-14
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 275 VGKTSILQRFISDTF 319
VGK+S++ RF+ D F
Sbjct: 25 VGKSSLVLRFVKDQF 39
>gi|2623670 (AF030545) proto-oncogene protein c-Ki-ras-1 [Oryzias latipes]
Length = 188
Score = 80.4 bits (195), Expect = 1e-14
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K+G ++ +
Sbjct: 162 EIRKHKEKMSKEGKKKKKKSK 182
>gi|3097256|emb|CAA76678| (Y17187) p21-ras protein [Platichthys flesus]
Length = 188
Score = 80.4 bits (195), Expect = 1e-14
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K+G ++ +
Sbjct: 162 EIRKHKEKMSKEGKKKKKKSK 182
>gi|4204831 (U53782) K-ras [Cyprinus carpio]
Length = 188
Score = 80.4 bits (195), Expect = 1e-14
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K+G ++ +
Sbjct: 162 EIRKHKEKMSKEGKKKKKKSK 182
>gi|548673|sp|P36412|RB11_DICDI RAS-RELATED PROTEIN RAB11 >gi|414965 (U02925) Rab11 [Dictyostelium
discoideum]
Length = 214
Score = 80.4 bits (195), Expect = 1e-14
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I G+++K Q+WDTAGQER+ +IT YYR A G LV+ + ++ +++W
Sbjct: 50 FATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWIL 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ +I I L+GNK D L + ++ E K + L F TSAL + N++ F
Sbjct: 110 ELRENADRNIEIMLVGNKSD-LRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAF 167
>gi|439534 (U03612) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 125
Score = 80.4 bits (195), Expect = 1e-14
Identities = 35/84 (41%), Positives = 53/84 (62%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K I + + +KLQIWDTAGQERF +IT+ YY+ A GI V+S+ D SF+ ++ W
Sbjct: 24 DFKIKTITVEDKKIKLQIWDTAGQERFRNITQTYYKGAFGIIFVYSIADRNSFNNVETWI 83
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLD 599
+ I +++ L+GNK D D
Sbjct: 84 KSITENTTDEVCSILVGNKMDSQD 107
>gi|3914558|sp|Q41640|RAB7_VIGAC RAS-RELATED PROTEIN RAB7 >gi|629657|pir||S39567 rab7 protein - moth
bean >gi|414842 (L14928) Rab7p [Vigna aconitifolia]
Length = 206
Score = 80.4 bits (195), Expect = 1e-14
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ I+ + LQIWDTAGQERF S+ +YR A+ L + + +SFD +D W+
Sbjct: 44 DFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWH 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETKATNM-----NLRFFPTSALQN 680
E + + P L+GNK D +D N E KA + N+ +F TSA ++
Sbjct: 104 EEFLKQANPPDPRSFPFILLGNKID-IDGGNSRVVSEKKAKDWCASKGNIPYFETSAKED 162
Query: 681 KNIDKIFLEMGERMLKIGHKME 746
N+D FL + + L H+ +
Sbjct: 163 FNVDAAFLCIAKAALANEHEQD 184
>gi|1370158|emb|CAA98185| (Z73957) RAB11I [Lotus japonicus]
Length = 163
Score = 80.0 bits (194), Expect = 2e-14
Identities = 46/133 (34%), Positives = 76/133 (56%), Gaps = 6/133 (4%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
++ + I+ +++K QIWDTAGQER+ +IT YYR A G +V+ + +F+ + +W + +
Sbjct: 1 TRSVRIHDKTVKAQIWDTAGQERYRAITSAYYRGAVGALIVYDVTRQVTFENVQRWLKEL 60
Query: 537 VAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDKIF 701
+I I L+GNK DL ++ T+ A N F TSAL++ N+D F
Sbjct: 61 RDHTDANIVIMLVGNKADL----RHLRAVPTEEATAFAERENTYFMETSALESLNVDNAF 116
Query: 702 LE-MGERMLKIGHKMEKKG 755
+E + E + K +KG
Sbjct: 117 IEVLSEIYNVVSRKTLEKG 135
>gi|452357|emb|CAA82708| (Z29591) guanine nucleotide regulatory protein [Vicia faba]
>gi|1098294|prf||2115367B small GTP-binding protein
[Vicia faba]
Length = 207
Score = 80.0 bits (194), Expect = 2e-14
Identities = 45/138 (32%), Positives = 79/138 (56%), Gaps = 5/138 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++ + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +++W +
Sbjct: 40 FATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK 99
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDK 695
+ +I + L+GNK DL ++ T+ A N F TSAL++ N++
Sbjct: 100 ELRDHTDANIVVMLVGNKADL----RHLRAVSTEDSTAFAERENTFFMETSALESLNVES 155
Query: 696 IFLEMGERMLKIGHKMEKKGLNV 764
F E+ + +I + KK L +
Sbjct: 156 AFTEV---LTQIYRVVSKKALEI 175
>gi|439548 (U03619) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 125
Score = 80.0 bits (194), Expect = 2e-14
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ K+I ++ + +K+QIWDTAGQER+ +IT+ YY+ A GI LVF++ D ++F+ IDKW
Sbjct: 24 DFKIKKIQVDEKVVKMQIWDTAGQERYQTITQTYYKGAMGIILVFAVNDKQTFNDIDKWM 83
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLD 599
I ++I LIG K DL D
Sbjct: 84 NQIKQHASDNIIKVLIGKKTDLPD 107
>gi|1531769|emb|CAA69142| (Y07811) rab5C-like protein [Gallus gallus]
Length = 216
Score = 80.0 bits (194), Expect = 2e-14
Identities = 48/173 (27%), Positives = 87/173 (49%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P P A K +FK+++LGE + + + + ++ + ++ +
Sbjct: 10 PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTT 69
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQER+HS+ YYR A +V+ + + +F W + + + +I I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVI 129
Query: 567 FLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL D + +T A + +L F TSA N+++IF+ + +++ K
Sbjct: 130 ALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
>gi|3914559|sp|Q43463|RAB7_SOYBN RAS-RELATED PROTEIN RAB7 >gi|414834 (L14930) Rab7p [Glycine max]
Length = 206
Score = 80.0 bits (194), Expect = 2e-14
Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 9/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ I+ + LQIWDTAGQERF S+ +YR A+ LV+ + +SFD ++ W+
Sbjct: 44 DFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWH 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETKATNM-----NLRFFPTSALQN 680
E + + P L+GNK D +D N E KA + N+ +F TSA ++
Sbjct: 104 EEFLKQANPPDPRAFPFILLGNKID-IDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKED 162
Query: 681 KNIDKIFLEMGERMLKIGHKME 746
N+D FL + + L H+ +
Sbjct: 163 YNVDAAFLCIAKAALANEHEQD 184
>gi|3875760|emb|CAB07356| (Z92830) similar to RAS related protein [Caenorhabditis elegans]
Length = 201
Score = 79.6 bits (193), Expect = 2e-14
Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ K++ I+ ++L++WDT GQE F SI + YYRNA G LV+ + +SF +++W
Sbjct: 43 FGYKDLQIDKYKVRLRVWDTCGQENFRSIIRAYYRNALGALLVYDITCRKSFVHLEQWLS 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDI--KRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ ++ I LIGNK D L + D+ + E A L F TSA NK+++K F+
Sbjct: 103 DLRQHGHPEMVIMLIGNKSD-LKAVRDVTTEEGEAFAKKNGLTFMETSAKANKHVEKAFV 161
Query: 705 EMGE---RMLKIG----HKMEKKGLNVNRRKRN 782
+ LK+G ++KK + + R R+
Sbjct: 162 NTAHEIYKKLKLGVIEDDDVKKKKIGIILRSRS 194
>gi|106189|pir||F34323 GTP-binding protein Rab5 - human >gi|550070 (M28215) GTP-binding
protein [Homo sapiens]
Length = 215
Score = 79.6 bits (193), Expect = 2e-14
Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P P K +FK+++LGE + + + + ++ + ++ +
Sbjct: 9 PNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT 68
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQE +HS+ YYR A +V+ + ++ SF W + + + +I I
Sbjct: 69 VKFEIWDTAGQEGYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 567 FLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL + D + ++ A + +L F TSA + N+++IF+ + +++ K
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183
>gi|1370154|emb|CAA98183| (Z73955) RAB11G [Lotus japonicus]
Length = 219
Score = 79.6 bits (193), Expect = 2e-14
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I+ + +K QIWDTAGQERF ++T YYR A G +V+ + +FD + +W +
Sbjct: 50 FQTQSLEIDSKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSVSRWLD 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD-DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ + + L+GNK DL + I+ ++ A L F TSAL + N+ F E
Sbjct: 110 ELKTHCDTTVAMMLVGNKCDLENIRAVSIEEGKSLAEAQGLFFMETSALDSTNVRTAF-E 168
Query: 708 MGERMLKIGHKMEKKGLNVNRRK 776
M R +I + + +K LN + K
Sbjct: 169 MVIR--EIYNNVSRKVLNSDTYK 189
>gi|1842071 (U87143) Nt-rab11e homolog [Mesembryanthemum crystallinum]
Length = 167
Score = 79.6 bits (193), Expect = 2e-14
Identities = 44/114 (38%), Positives = 63/114 (54%), Gaps = 2/114 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
+ I I+G+ +K QIWDTAGQERF ++T YYR A G +V+ + +FD I +W + +
Sbjct: 1 QSIDIDGKKVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFDSISRWLDELK 60
Query: 540 AEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ L+GNK D LDD+ + E K A L F TSA + N+ F
Sbjct: 61 THSDTTVARMLVGNKCD-LDDIRAVSTDEGKSLAEEHGLFFIETSAKDSTNVKTSF 115
>gi|422713|pir||S31720 transforming protein (K-ras) - short-tailed opossum (Monodelphis
domestica)
Length = 188
Score = 79.6 bits (193), Expect = 2e-14
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ +
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSK 182
>gi|2118465|pir||I51971 K-ras protein - human >gi|186764 (M54968) K-ras oncogene protein
[Homo sapiens]
Length = 188
Score = 79.6 bits (193), Expect = 2e-14
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ +
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSK 182
>gi|131879|sp|P01118|RASL_HUMAN TRANSFORMING PROTEIN P21/K-RAS 2B >gi|68938|pir||TVHU2K
transforming protein K-ras-2, major splice form - human
>gi|190910 (L00049) cellular transforming proto-oncogene
[Homo sapiens] >gi|223754|prf||0909262B protein
c-Ki-ras2 [Homo sapiens]
Length = 188
Score = 79.6 bits (193), Expect = 2e-14
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ +
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSK 182
>gi|1370156|emb|CAA98184| (Z73956) RAB11H [Lotus japonicus]
Length = 218
Score = 79.6 bits (193), Expect = 2e-14
Identities = 43/138 (31%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++ + +K Q+WDTAGQER+ +IT YYR A G LV+ + +F+ +++W +
Sbjct: 50 FATRSIRVDDKVVKAQVWDTAGQERYRAITSAYYRGAVGALLVYDVSRHVTFENVERWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLR---FFPTSALQNKNIDKIF 701
+ +I + L+GNK D L + + ++ +N R F TSAL++ N++ F
Sbjct: 110 ELRDHTDTNIVVMLVGNKAD-LRHLRAVSTEDSSGFLLNERTHFFMETSALESLNVENAF 168
Query: 702 LEMGERMLKIGHKMEKKGLNV 764
E+ + +I + KK L +
Sbjct: 169 TEV---LTQIYRVVSKKALEI 186
>gi|623592 (L29276) putative [Nicotiana tabacum]
Length = 204
Score = 79.6 bits (193), Expect = 2e-14
Identities = 49/133 (36%), Positives = 76/133 (56%), Gaps = 8/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ I+ + LQIWDTAGQERF S+ +YR A+ LV+ + RSFD +D W+
Sbjct: 44 DFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMRSFDNLDNWH 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETKA----TNMNLRFFPTSALQNK 683
E + + P L+GNK D +D N E KA ++ + +F TSA ++
Sbjct: 104 EEFLKQANPPDPKTFPFILLGNKID-IDGGNSRVVSEKKAKEWCSSKGIPYFETSAKEDI 162
Query: 684 NIDKIFLEMGERMLKIGHKME 746
N+D FL + L H+ +
Sbjct: 163 NVDAAFLFYCKTRLANEHRQD 183
>gi|541980|pir||S41432 guanine nucleotide regulatory protein - fava bean
Length = 223
Score = 79.6 bits (193), Expect = 2e-14
Identities = 45/117 (38%), Positives = 66/117 (55%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++++ ING+ +K QIWDTAGQERF + T YYR A G LV+ + ++FD I +W
Sbjct: 51 FQTQKMEINGKEVKAQIWDTAGQERFRAETSAYYRGAVGALLVYDISRRQTFDSIGRWLN 110
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFF--PTSALQNKNIDKIF 701
+ ++ L+GNK D L D ++ E KA FF TSAL + N+ F
Sbjct: 111 ELHTHSDMNVVTILVGNKSD-LKDAREVPTPEGKALAEAQGFFFMETSALDSSNVVSAF 168
>gi|2516239|dbj|BAA22654| (AB004664) Rab33B [Mus musculus] >gi|2516242|dbj|BAA22655|
(AB004665) Rab33B [Mus musculus]
Length = 229
Score = 79.6 bits (193), Expect = 2e-14
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKI+++G+ + + + + ++ + + I+GE +K+Q+WDTAGQE
Sbjct: 34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 93
Query: 423 RFH-SITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAE-VGNDIPIFLIGNKYDL- 593
RF S+ ++YYRN + + V+ M + SF + W E + NDIP L+GNK DL
Sbjct: 94 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 153
Query: 594 ------------LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
D + + FET A N N N +++ IF+ + ++
Sbjct: 154 SAIQVPTDLAQKFADTHSMPLFETSAKNPN---------DNDHVEAIFMTLAHKL 199
>gi|1076457|pir||S52024 small GTP-binding protein - rape >gi|289370 (L12395) small
GTP-binding protein [Brassica napus]
Length = 219
Score = 79.2 bits (192), Expect = 3e-14
Identities = 42/117 (35%), Positives = 65/117 (54%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I G+ +K QIWDTAGQERF ++T YYR A G +V+ + +F+ + +W +
Sbjct: 49 FQTQSMEIEGKDVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVARWLD 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ + L+GNK D LD+M + E K A L F TSAL + N+ F
Sbjct: 109 ELKTHSDTTVARMLVGNKCD-LDNMRAVSVEEGKALAETQGLFFMETSALNSTNVKTAF 166
>gi|548665|sp|P36409|RAB2_DICDI RAS-RELATED PROTEIN RAB2 >gi|414967 (U02926) Rab2 [Dictyostelium
discoideum]
Length = 199
Score = 79.2 bits (192), Expect = 3e-14
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ +++KLQIWDTAGQE F SIT++YYR + G LV+ + +F+ + W +
Sbjct: 34 FGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLK 93
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +++ I LIGNK D ++ + E + A L F TSA N+++ F+
Sbjct: 94 DARSYANSNMTIILIGNKSD-MESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFV 152
Query: 705 EMGERMLKIGHKMEKKGLNVN 767
KI K++K ++N
Sbjct: 153 NTAS---KIYEKIQKGDFDIN 170
>gi|2500064|sp|P79800|RASK_MELGA TRANSFORMING PROTEIN P21/K-RAS >gi|2134443|pir||JC5154 K-ras
protein - turkey >gi|1694837|emb|CAA59755| (X85754)
turkey K-Ras [Meleagris gallopavo]
Length = 188
Score = 79.2 bits (192), Expect = 3e-14
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ +
Sbjct: 162 EIRKHKEKMSKDGKKKKKKTK 182
>gi|3290012|gb|AAC25633| (AF026474) GTPase K-rasB [Pleuronectes vetulus]
Length = 188
Score = 79.2 bits (192), Expect = 3e-14
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPFRTVDTKQAQDLALSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K+G ++ +
Sbjct: 162 EIRKHKEKMSKEGKKKKKKSK 182
>gi|303746|dbj|BAA02114| (D12546) GTP-binding protein [Pisum sativum]
>gi|738938|prf||2001457F GTP-binding protein [Pisum
sativum]
Length = 218
Score = 79.2 bits (192), Expect = 3e-14
Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K + I+ + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +W +
Sbjct: 50 FATKSLNIDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ +I + LIGNK DL D K F A +L F TSAL+ N++
Sbjct: 110 ELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSF---AERESLYFMETSALEATNVENA 166
Query: 699 FLEMGERMLKIGHKMEKKGL 758
F E+ + +I H + KK +
Sbjct: 167 FSEV---LSQIYHIVSKKAV 183
>gi|549796|sp|P36018|YP52_YEAST GTP-BINDING PROTEIN YPT52 >gi|539333|pir||S38083 probable purine
nucleotide-binding protein YPT52 - yeast (Saccharomyces
cerevisiae) >gi|483599|emb|CAA53770| (X76174) ypt52p
[Saccharomyces cerevisiae] >gi|486429|emb|CAA82086|
(Z28239) ORF YKR014c [Saccharomyces cerevisiae]
Length = 234
Score = 71.4 bits (172), Expect = 4e-14
Identities = 44/122 (36%), Positives = 72/122 (58%), Gaps = 22/122 (18%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
+K++VI K +IWDTAGQER+ S+ YYRNAN +V+ + + S W + +
Sbjct: 55 TKDVVI-----KFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDEL 109
Query: 537 VAEVG-NDIPIFLIGNKYDLL----------------DDMNDIKRFETK-----ATNMNL 650
+VG +D+ I+L+GNK DL D+ ++ T+ A L
Sbjct: 110 KNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGL 169
Query: 651 RFFPTSALQNKNIDKIFLEMGERM 722
F SA + + +IF ++GE++
Sbjct: 170 LFREVSAKTGEGVKEIFQDIGEKL 193
Score = 27.8 bits (60), Expect = 4e-14
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQRN 367
+VGK+SI+ RF+ DTF +T+ F ++
Sbjct: 13 SVGKSSIVHRFVKDTFDELRESTIGAAFLSQS 44
>gi|1076545|pir||S49225 guanine nucleotide regulatory protein - fava bean
>gi|547478|emb|CAA85733| (Z37503) guanine nucleotide
regulatory protein [Vicia faba]
>gi|1098297|prf||2115367E small GTP-binding protein
[Vicia faba]
Length = 200
Score = 78.0 bits (189), Expect = 4e-14
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ + +N ++K +IWDTAGQER+HS+ YYR A +V+ + SF KW +
Sbjct: 47 FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFTRAKKWVQ 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + ++ + L GNK D L+D + E + A L F TSA N++ +F
Sbjct: 107 ELQKQGNPNMVMALTGNKSD-LEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFY 165
Query: 705 EMGERM 722
E+ +R+
Sbjct: 166 EIAKRL 171
Score = 21.2 bits (43), Expect = 4e-14
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 278 GKTSILQRFISDTFTYSIINTVDKLFFQR 364
GK+S++ RF+ F +T+ FF +
Sbjct: 22 GKSSLVLRFVKGQFLEFQESTIGAAFFSQ 50
>gi|129324|sp|P10948|RB3B_BOVIN RAS-RELATED PROTEIN RAB-3B (SMG P25B) >gi|89583|pir||B29224
GTP-binding protein smg-25B - bovine >gi|162762 (M19886)
GTP-binding protein [Bos taurus]
Length = 219
Score = 78.8 bits (191), Expect = 4e-14
Identities = 44/152 (28%), Positives = 77/152 (49%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + + +KLQIWDTAGQE
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ ++
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ ++ A + FF SA +N ++ + F
Sbjct: 143 RVVPTEKGRLLAEQLGFDFFEASAKENISVRQAF 176
>gi|2251196|emb|CAA74341| (Y14019) Rab3B protein [Rattus norvegicus]
Length = 219
Score = 78.8 bits (191), Expect = 4e-14
Identities = 44/152 (28%), Positives = 77/152 (49%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVF-FNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F F ++ K + + + +KLQIWDTAGQE
Sbjct: 23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ ++
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ ++ A + FF SA +N ++ + F
Sbjct: 143 RVIPTEKGRLLAEQLGFDFFEASAKENISVRQAF 176
>gi|1370176|emb|CAA98165| (Z73937) RAB2A [Lotus japonicus]
Length = 211
Score = 78.8 bits (191), Expect = 4e-14
Identities = 44/126 (34%), Positives = 67/126 (52%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I LIGNK DL + E A L F SA +N+++ F++
Sbjct: 103 DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAATIYK 169
>gi|1765896|emb|CAA70498| (Y09314) Rab2-like protein [Arabidopsis thaliana]
Length = 211
Score = 78.8 bits (191), Expect = 4e-14
Identities = 44/126 (34%), Positives = 67/126 (52%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I LIGNK DL + E A L F SA +N+++ F++
Sbjct: 103 DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAATIYK 169
>gi|3023913|sp|P91580|GS10_CIOIN PUTATIVE RAS-RELATED PROTEIN COS41.2 >gi|1764012|emb|CAB06046|
(Z83760) COS41.2 [Ciona intestinalis]
Length = 218
Score = 78.8 bits (191), Expect = 4e-14
Identities = 55/175 (31%), Positives = 91/175 (51%), Gaps = 11/175 (6%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKI+++G+ + + + + ++ + + I+GE +KLQ+WDTAGQE
Sbjct: 16 FKIIVIGDSDVGKTCLTYRFCTGKFPEKTEATIGVDFRERTLDIDGEQIKLQLWDTAGQE 75
Query: 423 RFH-SITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI--VAEVGNDIPIFLIGNKYDL 593
RF S+ +YYRN + + + + RSF + W E + ++IP L+GNK DL
Sbjct: 76 RFRKSMVPHYYRNVHAVVFTYDVTKGRSFQGLPSWIEECERYSLNASEIPRILVGNKCDL 135
Query: 594 LD----DMNDIKRFETKATNMNLRFFPTSALQNK---NIDKIFLEMGERMLKIGHKMEKK 752
D D N RF A ++ F TSA + NI+ IFL + ++ M++
Sbjct: 136 KDQAEVDTNSATRF---ADANSMPLFETSAKADSEMGNIEAIFLTVAHKLKSQKPMMKQD 192
Query: 753 GLNVNR 770
N+ R
Sbjct: 193 YPNMKR 198
>gi|2245076|emb|CAB10498| (Z97343) GTP-binding RAB2A protein [Arabidopsis thaliana]
Length = 208
Score = 78.8 bits (191), Expect = 4e-14
Identities = 44/126 (34%), Positives = 67/126 (52%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I LIGNK DL + E A L F SA +N+++ F++
Sbjct: 103 DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAATIYK 169
>gi|1172845|sp|P46629|RB25_RABIT RAS-RELATED PROTEIN RAB-25 >gi|477275|pir||A48500 small GTP-binding
protein Rab25 - rabbit >gi|436001 (L03303) small
GTP-binding protein [Oryctolagus cuniculus]
Length = 213
Score = 78.8 bits (191), Expect = 4e-14
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+S++ +++ ++K QIWDTAG ER+ +IT YYR A G LVF + +++ +++W +
Sbjct: 49 FSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLK 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
+ I + L+GNK D L ++ E + A N L F TSAL + N++ F
Sbjct: 109 ELYDHAEATIVVMLVGNKSD-LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 166
>gi|541949|pir||S39566 rab7 protein - Soybean
Length = 206
Score = 78.8 bits (191), Expect = 4e-14
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ I+ + LQIWDTAGQERF S+ +YR A+ LV+ + +SFD ++ W+
Sbjct: 44 DFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWH 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETKATNM-----NLRFFPTSALQN 680
E + + P L+GNK D +D N E KA + N+ +F TSA +
Sbjct: 104 EEFLKQANPPDPRAFPFILLGNKID-IDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEA 162
Query: 681 KNIDKIFLEMGERMLKIGHKME 746
N+D FL + + L H+ +
Sbjct: 163 YNVDAAFLCIAKAALANEHEQD 184
>gi|439542 (U03616) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 126
Score = 78.4 bits (190), Expect = 5e-14
Identities = 37/95 (38%), Positives = 58/95 (60%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ V N +++K+QIWDTAGQ+ F SIT++YY+ + G+ LVF + ++ SF + KWY
Sbjct: 25 FGSQVFVKNEKTIKIQIWDTAGQDSFKSITRSYYKGSIGVLLVFDITNEESFHNVLKWYN 84
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKA 635
+ + I L+GNK D L+ I + KA
Sbjct: 85 EVNDSAAQNCQIVLVGNKVD-LESHRKISTIQAKA 118
>gi|1208537 (U32185) guanine nucleotide regulatory protein [Glycine max]
Length = 211
Score = 78.4 bits (190), Expect = 5e-14
Identities = 44/126 (34%), Positives = 67/126 (52%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I LIGNK DL + E A L F SA +N+++ F++
Sbjct: 103 HARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAATIYK 169
>gi|114089|sp|P28187|ARA4_ARATH RAS-RELATED PROTEIN ARA-4 >gi|81633|pir||JS0641 GTP-binding protein
ara-4 - Arabidopsis thaliana >gi|217839|dbj|BAA00831|
(D01026) small GTP-binding protein [Arabidopsis
thaliana] >gi|3763922 (AC004450) GTP-binding protein
[Arabidopsis thaliana]
Length = 214
Score = 78.4 bits (190), Expect = 5e-14
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ ++I+G+ +K QIWDTAGQERF ++T YYR A G +V+ + +F+ + +W +
Sbjct: 49 FQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLD 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + LIGNK D L+ + + E K A + L F TSAL + N+ F
Sbjct: 109 ELNTHSDTTVAKMLIGNKCD-LESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAF- 166
Query: 705 EMGERMLKIGHKMEKKGLNVNRRK 776
EM R +I + +K LN + K
Sbjct: 167 EMVIR--EIYSNISRKQLNSDSYK 188
>gi|3036779|emb|CAB06484| (Z84479) match: multiple proteins; match: O00407 Q12829 P22127
P36861 Q40219; match: P70550 Q41022 P22125 Q08155
P35286; match: P51148 P51147 P35293 P36861 P35289;
match: P35284 Q40217 P51152 P51157 P51158; match: Q41022
P51153...
Length = 236
Score = 78.0 bits (189), Expect = 7e-14
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
+Y + I+++G +KL++WDT+GQ RF +I ++Y R A GI LV+ + + SFD ID+W
Sbjct: 5 DYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWI 64
Query: 528 EGIVAEVGNDIPIFLIGNKYDL-LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ I E +P L+GN+ L ++ A + FF S L N N+ + F
Sbjct: 65 KEI-DEHAPGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFT 123
Query: 705 EMGERMLKIGHKMEK 749
E+ R++ + H MEK
Sbjct: 124 EL-SRIVLMRHGMEK 137
>gi|303742|dbj|BAA02112| (D12544) GTP-binding protein [Pisum sativum]
>gi|738936|prf||2001457D GTP-binding protein [Pisum
sativum]
Length = 217
Score = 78.0 bits (189), Expect = 7e-14
Identities = 44/138 (31%), Positives = 79/138 (56%), Gaps = 5/138 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I ++ + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +++W +
Sbjct: 50 FATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDK 695
+ +I + L+GNK DL ++ T+ A + F TSAL++ N++
Sbjct: 110 ELRDHTDANIVVMLVGNKADL----RHLRAVSTEDSTSFAEREHTFFMETSALESLNVES 165
Query: 696 IFLEMGERMLKIGHKMEKKGLNV 764
F E+ + +I + KK L +
Sbjct: 166 AFTEV---LTQIYRVVSKKALEI 185
>gi|267527|sp|Q01111|YPT3_NICPL RAS-RELATED PROTEIN YPT3 >gi|282952|pir||S23523 GTP-binding protein
Np-ypt3 - curled-leaved tobacco >gi|19715|emb|CAA45351|
(X63874) Np-ypt3 [Nicotiana plumbaginifolia]
Length = 218
Score = 78.0 bits (189), Expect = 7e-14
Identities = 45/130 (34%), Positives = 73/130 (55%), Gaps = 2/130 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K + I+ + +K QIWDTAGQER+ +IT YYR A G LV+ + +++ + +W +
Sbjct: 50 FATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ +I + LIGNK D L + + E K A L F TSAL+ N++ F
Sbjct: 110 ELRDHTDPNIVVMLIGNKSD-LRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFT 168
Query: 705 EMGERMLKIGHK 740
E ++ +I K
Sbjct: 169 EALTQIYRIVSK 180
>gi|1710027|sp|P51147|RB5C_CANFA RAS-RELATED PROTEIN RAB-5C >gi|481437|pir||S38625 Rab5c protein -
dog >gi|415377|emb|CAA81626| (Z27110) Rab5c protein
[Canis familiaris]
Length = 216
Score = 78.0 bits (189), Expect = 7e-14
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P P A K +FK+++LGE + + + + ++ + ++ +
Sbjct: 10 PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTT 69
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQER+HS+ YYR A +V+ + + +F W + + + +I I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 567 FLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL + + + A + +L F TSA N+++IF+ + +++ K
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
>gi|1710028|sp|P51148|RB5C_HUMAN RAS-RELATED PROTEIN RAB-5C (L1880) >gi|2118482|pir||I38703
Rab5c-like protein - human >gi|508285 (U11293)
Rab5c-like protein, similar to Canis familiaris Rab5c
protein, PIR Accession Number S38625 [Homo sapiens]
>gi|642532 (U18420) ras-related small GTP binding
protein Rab5 [Homo sapiens]
Length = 216
Score = 78.0 bits (189), Expect = 7e-14
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P P A K +FK+++LGE + + + + ++ + ++ +
Sbjct: 10 PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTT 69
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQER+HS+ YYR A +V+ + + +F W + + + +I I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 567 FLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL + + + A + +L F TSA N+++IF+ + +++ K
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
>gi|2500075|sp|Q39573|YPT5_CHLRE GTP-BINDING PROTEIN YPTC5 >gi|1363475|pir||JC4107 membrane vesicle
transport protein ypt C5 - Chlamydomonas reinhardtii
>gi|806726 (U13170) YptC5 [Chlamydomonas reinhardtii]
Length = 206
Score = 78.0 bits (189), Expect = 7e-14
Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 9/160 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M+ K+ K++ILG+ + N ++ +KEI ++ + + +Q
Sbjct: 1 MSTKKRRLLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + + +SFD +D W + + + G ++ P
Sbjct: 61 IWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPF 120
Query: 567 FLIGNKYD----LLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
++GNK D +++ K A+ ++ +F TSA ++ N++ F
Sbjct: 121 MVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAF 169
>gi|2764802|emb|CAA54822| (X77795) ras-like gene [Zea mays]
Length = 210
Score = 77.6 bits (188), Expect = 9e-14
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ + LIGNK DL + E A L F SA +N+++ F++
Sbjct: 103 DARQHANANMTVMLIGNKCDLSHRRAVSYEEGEQFAKEHGLVFMEASAKTAQNVEEAFIK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAGTIYK 169
>gi|4417298|gb|AAD20423| (AC007019) putative RAS-related protein RAB7 [Arabidopsis thaliana]
Length = 230
Score = 77.6 bits (188), Expect = 9e-14
Identities = 45/133 (33%), Positives = 78/133 (57%), Gaps = 8/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ I+ +S+ LQIWDTAGQERF S+ +YR A+ LV+ + + +SF+ ++ W+
Sbjct: 45 DFVTKELHIDEKSVTLQIWDTAGQERFQSLGAAFYRGADCCVLVYDVNNLKSFETLNNWH 104
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNK 683
+ + P LIGNK D+ +++ + E + N+ + TSA ++
Sbjct: 105 TEFLKQANPMEPETFPFVLIGNKTDVDGGNSRVVSNKRAIEWCGSKGNIPYHETSAKEDT 164
Query: 684 NIDKIFLEMGERMLKIGHKME 746
NID+ FL + L H +E
Sbjct: 165 NIDEAFLSVAHIALSNEHILE 185
>gi|2118462|pir||S52646 small GTP-binding protein gmr2 - soybean
Length = 219
Score = 77.6 bits (188), Expect = 9e-14
Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I+ + +K QIWDTAGQERF ++T YYR A G +V+ + +FD + +W +
Sbjct: 50 FQTQCLEIDSKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLD 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + + L+GNK D L+++ + E K A L+F TSAL + N+ K+
Sbjct: 110 ELKTHCDTTVAMMLVGNKCD-LENIRAVSIDEGKSLAEAEGLQFMETSALDSTNV-KMAQ 167
Query: 705 EMGERMLKIGHKMEKKGLN 761
EM R +I + + +K LN
Sbjct: 168 EMVIR--EIYNNVSRKVLN 184
>gi|1370184|emb|CAA98169| (Z73941) RAB7B [Lotus japonicus]
Length = 205
Score = 77.6 bits (188), Expect = 9e-14
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ I+ + LQIWDTAGQERF S+ ++YR A+ LV+ + RSFD +D W+
Sbjct: 44 DFVTKELQIDDRLVTLQIWDTAGQERFQSLGVSFYRGADCCVLVYDVNVMRSFDTLDTWH 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETKATNM-----NLRFFPTSALQN 680
E + + P L+GNK D +D N E KA + N+ +F TSA ++
Sbjct: 104 EEFLKQANPPDTRTFPFILLGNKID-IDGGNSRVVSEKKANDWCVSKGNIPYFETSAKED 162
Query: 681 KNIDKIFLEMGERML 725
D FL + + L
Sbjct: 163 YIGDAAFLSIAKTAL 177
>gi|3024502|sp|Q40194|R11D_LOTJA RAS-RELATED PROTEIN RAB11D >gi|1370148|emb|CAA98180| (Z73952)
RAB11D [Lotus japonicus]
Length = 218
Score = 77.6 bits (188), Expect = 9e-14
Identities = 46/130 (35%), Positives = 73/130 (55%), Gaps = 4/130 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+++K + ++ + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +W +
Sbjct: 50 FATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ +I + LIGNK DL D K F A +L F TSAL+ N++
Sbjct: 110 ELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSF---AERESLYFMETSALEATNVENA 166
Query: 699 FLEMGERMLKIGHK 740
F E+ ++ +I K
Sbjct: 167 FTEVLTQIYRIVSK 180
>gi|3426326 (AF079459) small ras-like GTPase [Drosophila melanogaster]
Length = 207
Score = 77.6 bits (188), Expect = 9e-14
Identities = 47/175 (26%), Positives = 87/175 (48%), Gaps = 6/175 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M+ K+ K++ILG+ + N ++ +KE+V+N + +Q
Sbjct: 1 MSGRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEVVVNDRVVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LV+ + SF +D W + + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPDHFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKATNMN-LRFFPTSALQNKNIDKIFLEMGERMLKIGHKM 743
++GNK DL + +R + + N + ++ TSA + N++ F + + L++ +
Sbjct: 121 VVLGNKVDLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVEMAFQVIAKNALELEAEA 180
Query: 744 E 746
E
Sbjct: 181 E 181
>gi|642121 (L35845) small GTP-binding protein [Oryza sativa]
Length = 223
Score = 77.6 bits (188), Expect = 9e-14
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ + LIGNK DL + E A L F SA +N+++ F++
Sbjct: 103 DARQHANANMTVMLIGNKCDLSHRRAVSYEEGEQFAKEHGLVFMEASAKTAQNVEEAFIK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAGTIYK 169
>gi|1346957|sp|P49104|RB2B_MAIZE RAS-RELATED PROTEIN RAB-2-B >gi|722328 (U22433) GTP binding protein
[Zea mays]
Length = 210
Score = 77.3 bits (187), Expect = 1e-13
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I L+GNK DL + E A L F SA +N+++ F++
Sbjct: 103 DARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAGAIYK 169
>gi|303740|dbj|BAA02111| (D12543) GTP-binding protein [Pisum sativum]
Length = 215
Score = 77.3 bits (187), Expect = 1e-13
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + I + +K QIWDTAGQER+ +IT YYR A G LV+ +F+ +++W +
Sbjct: 48 FATRSVRILDKLVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDSTRHVTFENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ + I L+GNK DL + F K N+ F TSAL++ N+D
Sbjct: 108 ELRDHTDAYVVIMLVGNKTDLRHLCAVSTEEATAFAEKE---NIYFMETSALESMNVDSA 164
Query: 699 FLEM 710
F+E+
Sbjct: 165 FVEV 168
>gi|131802|sp|P20337|RB3B_HUMAN RAS-RELATED PROTEIN RAB-3B >gi|106187|pir||D34323 GTP-binding
protein Rab3B - human >gi|550066 (M28214) GTP-binding
protein [Homo sapiens]
>gi|4506369|ref|NP_002858.1|pRAB3B| RAB3B, member RAS
oncogene family
Length = 219
Score = 77.3 bits (187), Expect = 1e-13
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 246 FKILILGEXM*ERLVFF-NVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FK+LI+G + F ++ K + + + +KLQIWDTAGQE
Sbjct: 23 FKLLIIGNSSVGKTSFLLRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 82
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
R+ +IT YYR A G L++ + ++ SF+ + W I ++ + L+GNK D+ ++
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 142
Query: 603 -MNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ ++ + A + FF SA +N ++ + F
Sbjct: 143 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 176
>gi|1707014 (U78721) GTP binding protein isolog [Arabidopsis thaliana]
Length = 219
Score = 77.3 bits (187), Expect = 1e-13
Identities = 47/132 (35%), Positives = 74/132 (55%), Gaps = 2/132 (1%)
Query: 366 IVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAE 545
I ++ + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ +++W + +
Sbjct: 56 IQVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH 115
Query: 546 VGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFLEMGER 719
+ I L+GNK D L+ + I E K A N F TSAL+ N++ F E+
Sbjct: 116 TDANTVIMLVGNKAD-LNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEV--- 171
Query: 720 MLKIGHKMEKKGLN 761
+ +I + KK L+
Sbjct: 172 LTQIYRVVSKKALD 185
>gi|400977|sp|P31583|RHN1_NICPL RAS-RELATED PROTEIN RHN1 >gi|100274|pir||S20445 GTP-binding
protein, 21.8K - curled-leaved tobacco
>gi|19691|emb|CAA46112| (X64941) small GTP binding
protein [Nicotiana plumbaginifolia]
Length = 200
Score = 77.3 bits (187), Expect = 1e-13
Identities = 42/124 (33%), Positives = 67/124 (53%), Gaps = 2/124 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S + +N ++K +IWDTAGQER+HS+ YYR A +V+ + SF KW +
Sbjct: 47 FFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQ 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + ++ + L GNK D L+D + E + A L F TSA N++ IF
Sbjct: 107 ELQKQGNPNMVMALAGNKAD-LEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFY 165
Query: 705 EMGERM 722
E+ +R+
Sbjct: 166 EIAKRL 171
>gi|114085|sp|P19892|ARA1_ARATH RAS-RELATED PROTEIN ARA-1 >gi|81597|pir||JS0163 Ara protein -
Arabidopsis thaliana >gi|538283 (M25471) ras-related
protein [Arabidopsis thaliana]
Length = 218
Score = 77.3 bits (187), Expect = 1e-13
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I G+ +K QIWDTAGQERF ++T YYR A G +V+ + +F+ + +W +
Sbjct: 49 FQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLD 108
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + L+GNK D L+++ + E K A L F TSAL + N+ F
Sbjct: 109 ELKIHSDTTVARMLVGNKCD-LENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAF- 166
Query: 705 EMGERMLKIGHKMEKKGLNVNRRK 776
EM +L I + + +K LN + K
Sbjct: 167 EM--VILDIYNNVSRKQLNSDTYK 188
>gi|1370178|emb|CAA98166| (Z73938) RAB5A [Lotus japonicus]
Length = 200
Score = 76.1 bits (184), Expect = 1e-13
Identities = 40/124 (32%), Positives = 67/124 (53%), Gaps = 2/124 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S+ + +N ++K +IWDTAGQER+HS+ YYR A +V+ + SF KW +
Sbjct: 47 FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFTRAKKWVQ 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + ++ + GNK D L+D + E + A L F TSA N++ +F
Sbjct: 107 ELQKQGNPNMVMAFAGNKSD-LEDKRKVTADEARVYAEENGLFFMETSAKTAANVNDVFY 165
Query: 705 EMGERM 722
E+ +R+
Sbjct: 166 EIAKRL 171
Score = 21.2 bits (43), Expect = 1e-13
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 278 GKTSILQRFISDTFTYSIINTVDKLFFQR 364
GK+S++ RF+ F +T+ FF +
Sbjct: 22 GKSSLVLRFVKGQFLEFQESTIGAAFFSQ 50
>gi|3256092|emb|CAA80473| (Z22820) Rab22a protein [Canis familiaris]
Length = 194
Score = 70.6 bits (170), Expect = 1e-13
Identities = 37/125 (29%), Positives = 68/125 (53%), Gaps = 1/125 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +K + E K IWDTAGQERF ++ YYR + +V+ + + +F + W
Sbjct: 41 SFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV 100
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKR-FETKATNMNLRFFPTSALQNKNIDKIFL 704
+ + +I + + GNK DL+D ++R + A +++ F TSA NI+++F+
Sbjct: 101 KELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 160
Query: 705 EMGERM 722
E+ R+
Sbjct: 161 EISRRI 166
Score = 26.6 bits (57), Expect = 1e-13
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQR 364
VGK+SI+ RF+ D+F +I T+ F +
Sbjct: 16 VGKSSIVWRFVEDSFDPNINPTIGASFMTK 45
>gi|499068|emb|CAA54506| (X77301) GTPase [Glycine max]
Length = 219
Score = 76.9 bits (186), Expect = 2e-13
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + I+ + +K QIWDTAGQERF ++T YYR A G +V+ + +FD + +W +
Sbjct: 50 FQTQCLEIDSKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLD 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + + L+GNK D L+++ + E K A L F TSAL + N+ K+
Sbjct: 110 ELKTHCDTTVAMMLVGNKCD-LENIRAVSIDEGKSLAEAEGLFFMETSALDSTNV-KMAF 167
Query: 705 EMGERMLKIGHKMEKKGLN 761
EM R +I + + +K LN
Sbjct: 168 EMVIR--EIYNNVSRKVLN 184
>gi|1172842|sp|Q07983|RASK_MONDO TRANSFORMING PROTEIN P21/K-RAS >gi|556894|emb|CAA78108| (Z12125)
p21-ras [Monodelphis domestica]
Length = 188
Score = 76.9 bits (186), Expect = 2e-13
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TSA + D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGGDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K KM K G ++ +
Sbjct: 162 EIRKHKEKMSKDGKKKKKKSK 182
>gi|4490676|emb|CAB38603| (AL035655) ras-related protein [Schizosaccharomyces pombe]
Length = 205
Score = 76.9 bits (186), Expect = 2e-13
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA K+ K++ILGE + N ++ +KE++++ + + LQ
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
+WDTAGQERF S+ +YR A+ LV+ + + +SF+ +D W + + + P
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA---TNMNLRFFPTSALQNKNIDKIF 701
L+GNK D+ + + + + A + +F TSA + N+ + F
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAF 168
>gi|464565|sp|Q05976|RB18_LYMST RAS-RELATED PROTEIN RAB-18A >gi|481218|pir||S38340 GTP-binding
protein rab18a - great pond snail
>gi|288936|emb|CAA51235| (X72690) RAB18a [Lymnaea
stagnalis]
Length = 202
Score = 76.9 bits (186), Expect = 2e-13
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 2/172 (1%)
Query: 249 KILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQER 425
KILI+GE + + + ++ K + + G KL IWDTAGQER
Sbjct: 11 KILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQER 70
Query: 426 FHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI-VAEVGNDIPIFLIGNKYDLLDD 602
F ++T +YYR A G+ LV+ + +SF+ +D W + +D+ L+GNK D +
Sbjct: 71 FRTLTPSYYRGAQGVILVYDVSSKQSFNKLDAWLNELETFSTKHDMVKMLVGNKIDRANH 130
Query: 603 MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNV 764
A ++ F SA N + F E+ E++++ E N+
Sbjct: 131 EVTKDEGLKFARKHHMLFIEASAKTNDGVQCAFEELVEKIIQTPGLWETSSKNL 184
>gi|1174149 (U44104) small GTP binding protein Rab7 [Homo sapiens]
Length = 207
Score = 76.9 bits (186), Expect = 2e-13
Identities = 47/169 (27%), Positives = 84/169 (48%), Gaps = 6/169 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M + K+ K++ILG+ + N ++ +KE++++ + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + +F +D W + + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLVQASPRDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK DL + KR + + N+ +F TSA + N+++ F + LK
Sbjct: 121 VVLGNKVDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>gi|213478 (M73694) ras-1 protein [Oncorhynchus mykiss]
Length = 137
Score = 76.9 bits (186), Expect = 2e-13
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 5 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 64
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + F TSA + +D F +
Sbjct: 65 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARTYGIPFIETSAKTRQGVDDAFYTLVR 124
Query: 717 RMLKIGHKMEKK 752
+ K KM K+
Sbjct: 125 EIRKHKEKMSKE 136
>gi|627253|pir||A54321 transforming protein c-Ki-ras-1, hepatic - rainbow trout (fragment)
Length = 172
Score = 76.5 bits (185), Expect = 2e-13
Identities = 44/130 (33%), Positives = 68/130 (51%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARTYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ K KM K
Sbjct: 162 EIRKHKEKMSK 172
>gi|464570|sp|P35239|RB5B_HUMAN RAS-RELATED PROTEIN RAB-5B >gi|284376|pir||A43925 GTP-binding
protein Rab5b - human >gi|2118483|pir||I48730 rab5b -
mouse >gi|35839|emb|CAA38653| (X54871) ras related
protein Rab5b [Homo sapiens] >gi|871435|emb|CAA59016|
(X84239) rab5b [Mus musculus]
>gi|4506371|ref|NP_002859.1|pRAB5B| RAB5B, member RAS
oncogene family
Length = 215
Score = 76.5 bits (185), Expect = 2e-13
Identities = 46/173 (26%), Positives = 85/173 (48%), Gaps = 2/173 (1%)
Query: 210 PPNPMAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P A K +FK+++LGE + + + + ++ + ++ +
Sbjct: 9 PNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTT 68
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+K +IWDTAGQER+HS+ YYR A +V+ + + +F W + + + I I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 128
Query: 567 FLIGNKYDLLDD-MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L GNK DL + M + + + A + +L F TSA N++ +FL + +++ K
Sbjct: 129 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183
>gi|131797|sp|P18067|RAB7_CANFA RAS-RELATED PROTEIN RAB-7 >gi|108112|pir||B30413 GTP-binding
protein rab7 - dog >gi|164058 (M35522) GTP-binding
protein (rab7) [Canis familiaris]
Length = 207
Score = 76.5 bits (185), Expect = 2e-13
Identities = 47/169 (27%), Positives = 84/169 (48%), Gaps = 6/169 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M + K+ K++ILG+ + N ++ +KE++++ + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + +F +D W + + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK DL + KR + + N+ +F TSA + N+++ F + LK
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>gi|1710001|sp|P09527|RAB7_RAT RAS-RELATED PROTEIN RAB-7 (RAS-RELATED PROTEIN P23) (RAS-RELATED
PROTEIN BRL-RAS) >gi|505565|emb|CAA31053| (X12535)
ras-related protein p23 [Rattus rattus]
Length = 207
Score = 76.5 bits (185), Expect = 2e-13
Identities = 47/169 (27%), Positives = 84/169 (48%), Gaps = 6/169 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M + K+ K++ILG+ + N ++ +KE++++ + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + +F +D W + + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK DL + KR + + N+ +F TSA + N+++ F + LK
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>gi|1709999|sp|P51149|RAB7_HUMAN RAS-RELATED PROTEIN RAB-7 >gi|1089893|emb|CAA63763| (X93499) RAB7
protein [Homo sapiens]
Length = 207
Score = 76.5 bits (185), Expect = 2e-13
Identities = 47/169 (27%), Positives = 84/169 (48%), Gaps = 6/169 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M + K+ K++ILG+ + N ++ +KE++++ + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + +F +D W + + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK DL + KR + + N+ +F TSA + N+++ F + LK
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>gi|3452220 (AF031927) small G-protein [Trypanosoma cruzi]
Length = 229
Score = 64.4 bits (154), Expect = 2e-13
Identities = 37/106 (34%), Positives = 57/106 (52%), Gaps = 1/106 (0%)
Query: 384 SLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIP 563
++KL +WDTAGQE F+S+T+ YYR A + FS +D SF ++ W + V V I
Sbjct: 58 TVKLMLWDTAGQEVFNSLTQAYYRGAGAAIVAFSTVDKDSFMNVENWKKN-VENVCGSIL 116
Query: 564 IFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ L K+DL + + E A + L FF S + N+ ++F
Sbjct: 117 MVLCQTKFDLAHEAAVTNEEAEQLAIQLQLPFFRVSTKDDFNVTQLF 163
Score = 32.1 bits (71), Expect = 2e-13
Identities = 14/37 (37%), Positives = 22/37 (58%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQRNCY*RR 382
NVGKTS+L+RF+ F T+ F ++N + R+
Sbjct: 18 NVGKTSMLRRFVKGEFVNQYKKTIGAEFMEKNVFLRQ 54
>gi|439536 (U03613) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 126
Score = 76.1 bits (184), Expect = 3e-13
Identities = 40/96 (41%), Positives = 58/96 (59%), Gaps = 1/96 (1%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDK-W 524
++ K ++G+ LKLQIWDTAGQERF +IT YY+ A+ I +V+ SF+ I+K W
Sbjct: 24 DFKFKTFRLDGKGLKLQIWDTAGQERFRTITNAYYKGADAIVIVYDTTCQSSFEEIEKSW 83
Query: 525 YEGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKA 635
+ I G + + LIGNK DL + +R +T A
Sbjct: 84 IDDIHKHAGKNTTVLLIGNKSDLPNKAVITERAQTYA 120
>gi|4105817 (AF050174) Rab7 [Oryctolagus cuniculus]
Length = 207
Score = 76.1 bits (184), Expect = 3e-13
Identities = 47/169 (27%), Positives = 84/169 (48%), Gaps = 6/169 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M + K+ K++ILG+ + N ++ +KE++++ + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S++ +YR A+ LVF + +F +D W + + + P
Sbjct: 61 IWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFET-KATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK DL + KR + + N+ +F TSA + N+++ F + LK
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>gi|1346956|sp|P49103|RB2A_MAIZE RAS-RELATED PROTEIN RAB-2-A >gi|722326 (U22432) GTP binding protein
[Zea mays]
Length = 209
Score = 76.1 bits (184), Expect = 3e-13
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ I I+ + +KLQIWDTAGQE F SIT++YYR A G LV+ + +F+ + W E
Sbjct: 43 FGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
++ I L+GNK DL + E A L F SA +N+++ F++
Sbjct: 103 DARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVK 162
Query: 708 MGERMLK 728
+ K
Sbjct: 163 TAGAIYK 169
>gi|400923|sp|P31022|RAB7_PEA RAS-RELATED PROTEIN RAB7 >gi|485497|pir||S33531 GTP-binding protein
rab - garden pea >gi|20756|emb|CAA46600| (X65650)
RAS-related GTP-binding protein [Pisum sativum]
Length = 206
Score = 76.1 bits (184), Expect = 3e-13
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ LQIWDTAGQERF S+ +YR A+ LV+ + +SFD ++ W
Sbjct: 44 DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWR 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQN 680
E + + + P +IGNK D +D N E K A N+ +F TSA +
Sbjct: 104 EEFLIQANPSDPENFPFVVIGNKID-IDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEG 162
Query: 681 KNIDKIFLEMGERMLKIGHKME 746
N+++ F + + LK G + E
Sbjct: 163 INVEEAFQTIAKDALKSGEEEE 184
>gi|131860|sp|P22278|RAS1_RHIRA RAS-LIKE PROTEIN 1 >gi|100995|pir||A36365 transforming protein
homolog MRAS1 - Rhizomucor racemosus >gi|168369 (M55175)
MRAS1 [Rhizomucor racemosus]
Length = 203
Score = 75.7 bits (183), Expect = 3e-13
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K+ VI+ E+ L + DTAGQE + ++ + Y RN G LV+S+ SF+ I +Y+ I
Sbjct: 49 KQCVIDSETALLDVLDTAGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQIC 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D P+ L+GNK DL D + A N +F TSA Q N+D+ F E+
Sbjct: 109 RVKDRDYFPMVLVGNKCDLEGDRQVSSQEGRDLAKNFGCQFIETSAKQRINVDEAFFEVV 168
Query: 714 ERMLKIGHKMEKKG 755
+ + + E +G
Sbjct: 169 RDIRRYNKEQETRG 182
>gi|464552|sp|Q05147|RASK_XENLA TRANSFORMING PROTEIN P21/K-RAS >gi|280688|pir||A60192 transforming
protein (K-ras) - African clawed frog
>gi|64872|emb|CAA37336| (X53246) K-ras [Xenopus laevis]
Length = 187
Score = 75.7 bits (183), Expect = 3e-13
Identities = 45/139 (32%), Positives = 71/139 (50%), Gaps = 1/139 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK L D K+ + A + + F TSA + +D F +
Sbjct: 102 RVKDSEDVPMVLVGNKCALPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRK 776
+ K KM K G + K
Sbjct: 162 EIRKHKEKMSKDGKKKKKSK 181
>gi|227605|prf||1707302A ras oncogene [Xenopus laevis]
Length = 149
Score = 75.7 bits (183), Expect = 3e-13
Identities = 45/139 (32%), Positives = 71/139 (50%), Gaps = 1/139 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 4 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIK 63
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK L D K+ + A + + F TSA + +D F +
Sbjct: 64 RVKDSEDVPMVLVGNKCALPSRSVDTKQAQDLARSSGIPFIETSAKTRQGVDDAFYTLVR 123
Query: 717 RMLKIGHKMEKKGLNVNRRK 776
+ K KM K G + K
Sbjct: 124 EIRKHKEKMSKAGKKKKKSK 143
>gi|2117166|emb|CAB09136| (Z95624) Ras like GTPase [Homo sapiens]
Length = 278
Score = 75.7 bits (183), Expect = 3e-13
Identities = 43/136 (31%), Positives = 79/136 (57%), Gaps = 1/136 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
+Y + I+++G+ +KL++WDT+GQ RF +I ++Y R A G+ LV+ + + SF+ +D+W
Sbjct: 50 DYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWI 109
Query: 528 EGIVAEVGNDIPIFLIGNKYDL-LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ I E +P L+GN+ L ++ + A + + FF S L N NI + F
Sbjct: 110 KKI-EEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFT 168
Query: 705 EMGERMLKIGHKMEKKG 755
E+ R++ + H++ G
Sbjct: 169 ELA-RIVLLRHRLNWLG 184
>gi|2832648|emb|CAA16723| (AL021710) membrane-bound small GTP-binding - like protein
[Arabidopsis thaliana]
Length = 217
Score = 75.7 bits (183), Expect = 3e-13
Identities = 41/137 (29%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + ++ + +K Q+WDTAGQER+ +IT YYR A G LV+ + +F+ +++W +
Sbjct: 50 FATRSVHVDEKIIKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ ++ I L+GNK D L + + E + + N+ F TSAL N+++ F
Sbjct: 110 ELRDHTDANVVIMLVGNKAD-LRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFT 168
Query: 705 EMGERMLKIGHKMEKKGLN 761
+ + +I M +K L+
Sbjct: 169 HV---LTQIYRVMSRKALD 184
>gi|1710000|sp|P51150|RAB7_MOUSE RAS-RELATED PROTEIN RAB-7 >gi|2137781|pir||S62733 small GTP-binding
protein Rab7 - mouse >gi|1050551|emb|CAA61797| (X89650)
rab7 [Mus musculus]
Length = 207
Score = 75.7 bits (183), Expect = 3e-13
Identities = 47/169 (27%), Positives = 83/169 (48%), Gaps = 6/169 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M + K+ K++ILG+ + N ++ +KE++++ + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + +F +D W + + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK DL + KR + N+ +F TSA + N+++ F + LK
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYRKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>gi|92022|pir||S01934 GTP-binding protein, 23K - rat
Length = 201
Score = 75.3 bits (182), Expect = 5e-13
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE++++ + +QIWDTAGQERF S+ +YR A+ LVF + +F +D W
Sbjct: 38 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 97
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNID 692
+ + + + P ++GNK DL + KR + + N+ +F TSA + N++
Sbjct: 98 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 157
Query: 693 KIFLEMGERMLK 728
+ F + LK
Sbjct: 158 QAFQTIARNALK 169
>gi|266879|sp|P29687|RAB5_TOBAC RAS-RELATED PROTEIN RAB5 >gi|100333|pir||S23524 GTP-binding protein
Nt-rab5 - common tobacco >gi|19986|emb|CAA45352|
(X63875) Nt-rab5 [Nicotiana tabacum]
Length = 200
Score = 75.3 bits (182), Expect = 5e-13
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ S + +N ++K +IWDTAGQER+HS+ YYR A +V+ + S KW +
Sbjct: 47 FFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQ 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ + ++ + L GNK D L+D + E + A L F TSA N++ IF
Sbjct: 107 ELQKQGNPNMVMALAGNKAD-LEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFY 165
Query: 705 EMGERM 722
E+ +R+
Sbjct: 166 EIAKRL 171
>gi|1491714|emb|CAA68227| (X99962) rab-related GTP-binding protein [Homo sapiens]
Length = 217
Score = 75.3 bits (182), Expect = 5e-13
Identities = 42/106 (39%), Positives = 62/106 (57%), Gaps = 2/106 (1%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN- 554
G+ +KLQ+WDTAGQERF SIT++YYRN+ G FLVF + + RSF+ + W E V
Sbjct: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPF 118
Query: 555 DIPIFLIGNKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDK 695
I L+G+K DL + E + + + + TSA N+++
Sbjct: 119 RIVFLLVGHKCDLASQRQVTREEAEKLSADCGMMYIETSAKDATNVEE 166
>gi|4105819 (AF050175) Rab7 [Homo sapiens]
Length = 207
Score = 75.3 bits (182), Expect = 5e-13
Identities = 47/169 (27%), Positives = 83/169 (48%), Gaps = 6/169 (3%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M + K+ K++ILG+ + N ++ KE++++ + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLIKEVMVDDRLVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LVF + +F +D W + + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA-TNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK DL + KR + + N+ +F TSA + N+++ F + LK
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>gi|1405561|emb|CAA67153| (X98540) FSGTP1 [Fagus sylvatica]
Length = 215
Score = 74.9 bits (181), Expect = 6e-13
Identities = 43/117 (36%), Positives = 67/117 (56%), Gaps = 4/117 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + + G ++K QIWDTAGQER+ +IT YYR A G LV+ + +F+ + W +
Sbjct: 49 FATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTKPTTFEQV--WLK 106
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ ++I I LIGNK DL D + F + L F TSAL+ N++K
Sbjct: 107 ELRDHADSNIVIMLIGNKTDLKHSRAVRTEDAQGFMLR--KKALSFIETSALKATNVEKA 164
Query: 699 F 701
F
Sbjct: 165 F 165
>gi|1575028 (U53177) Psmras1 [Schistosoma mansoni]
Length = 184
Score = 74.9 bits (181), Expect = 6e-13
Identities = 44/140 (31%), Positives = 80/140 (56%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE L I DTAGQE + ++ Y R G VF++ + +S+D I+++ E I
Sbjct: 42 KQMVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAVNNSKSYDDINQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +++P+ L+GNK DL + + ++ A + N+ + TSA + ++ F ++
Sbjct: 102 RVKDADEVPMVLVGNKVDLTNRSVCTEEAKSLAHSYNIPYVETSAKTRQGVEDAFHKL-- 159
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ +I EKKG + +RKR
Sbjct: 160 -VREIRKSKEKKGKDRKKRKR 179
>gi|1877405|emb|CAA68211| (X99951) localizes in diffuse reticular staining pattern
[Trypanosoma brucei]
Length = 218
Score = 74.9 bits (181), Expect = 6e-13
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 3/172 (1%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKI+++G+ + + + + ++ ++ + ++LQIWDTAGQE
Sbjct: 15 FKIIVIGDSGVGKSSLTVRLSEDVFYKDYASTIAIDFRMHQMTYMDKRVRLQIWDTAGQE 74
Query: 423 RFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDLLDD 602
RF S+ +YR ANG+ L F + SF ++ W E + + IP L+G K D
Sbjct: 75 RFQSVATAFYRGANGVMLCFDLTHRPSFLHLEHWMERVRQQSLPGIPCLLVGCKSDEART 134
Query: 603 MNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLN 761
+ + E A + + TSA + +N+ F ++ + + + + KGL+
Sbjct: 135 SRQVSKEEAMAWAKQHGMSYIDTSAKEKENVQSAFQKIAQEIFEDMKERTGKGLS 189
>gi|1890611|emb|CAA72269| (Y11479) Ras protein homologue [Schistosoma mansoni]
Length = 150
Score = 74.9 bits (181), Expect = 6e-13
Identities = 44/140 (31%), Positives = 80/140 (56%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE L I DTAGQE + ++ Y R G VF++ + +S+D I+++ E I
Sbjct: 8 KQMVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAVNNSKSYDDINQYREQIK 67
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +++P+ L+GNK DL + + ++ A + N+ + TSA + ++ F ++
Sbjct: 68 RVKDADEVPMVLVGNKVDLTNRSVCTEEAKSLAHSYNIPYVETSAKTRQGVEDAFHKL-- 125
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ +I EKKG + +RKR
Sbjct: 126 -VREIRKSKEKKGKDRKKRKR 145
>gi|1710017|sp|P35293|RB18_MOUSE RAS-RELATED PROTEIN RAB-18 >gi|478319|pir||JN0874 ras-related
GTP-binding protein Rab18 - mouse >gi|388325 (L04966)
Rab18 [Mus musculus] >gi|515041|emb|CAA56583| (X80333)
rab18 [Mus musculus]
Length = 206
Score = 74.9 bits (181), Expect = 6e-13
Identities = 53/178 (29%), Positives = 89/178 (49%), Gaps = 9/178 (5%)
Query: 249 KILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQER 425
KILI+GE + + + ++ K I ++G KL IWDTAGQER
Sbjct: 10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69
Query: 426 FHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAE-VGNDIPIFLIGNKYDLLD- 599
F ++T +YYR A G+ LV+ + +F +D W + NDI L+GNK D +
Sbjct: 70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 129
Query: 600 --DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI----GHKMEKKGLN 761
D N+ +F A ++ F SA + F E+ E++++ + + KG+
Sbjct: 130 EVDRNEGLKF---ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK 186
Query: 762 VNRRKRN 782
++ R+ +
Sbjct: 187 LSHREES 193
>gi|1710019|sp|P51154|RB22_CANFA RAS-RELATED PROTEIN RAB-22 >gi|631514|pir||S40208 rab22 protein -
dog
Length = 194
Score = 68.3 bits (164), Expect = 7e-13
Identities = 36/125 (28%), Positives = 67/125 (52%), Gaps = 1/125 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +K + E K IWDTAGQE F ++ YYR + +V+ + + +F + W
Sbjct: 41 SFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV 100
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDIKR-FETKATNMNLRFFPTSALQNKNIDKIFL 704
+ + +I + + GNK DL+D ++R + A +++ F TSA NI+++F+
Sbjct: 101 KELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 160
Query: 705 EMGERM 722
E+ R+
Sbjct: 161 EISRRI 166
Score = 26.6 bits (57), Expect = 7e-13
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQR 364
VGK+SI+ RF+ D+F +I T+ F +
Sbjct: 16 VGKSSIVWRFVEDSFDPNINPTIGASFMTK 45
>gi|3914521|sp|O04157|RAB7_ARATH RAS-RELATED PROTEIN RAB7 >gi|2065015|emb|CAA70951| (Y09821)
GTP-binding protein Rab7 [Arabidopsis thaliana]
>gi|2505866|emb|CAA72904| (Y12227) GTP-binding protein
Rab7 [Arabidopsis thaliana] >gi|3287684 (AC003979)
Strong similaity to gb|Y09821 GTP-binding protein Rab7
from A. thaliana. EST gb|T76449 comes from this gene.
[Arabidopsis thaliana]
Length = 203
Score = 74.5 bits (180), Expect = 8e-13
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
M+ ++ K++ILG+ + N ++ +KE+ I+ + LQ
Sbjct: 1 MSTRRRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LV+ + +SF+ +D W+ + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPF 120
Query: 567 FLIGNKYDLLDD----MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
L+GNK D+ +++ K E A N+ +F TSA ++ N+D FL
Sbjct: 121 ILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFL 170
>gi|548666|sp|P36410|RAB4_DICDI RAS-RELATED PROTEIN RAB4 >gi|414969 (U02927) Rab4 [Dictyostelium
discoideum]
Length = 205
Score = 74.5 bits (180), Expect = 8e-13
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + +N + +KLQIWDTAGQERF ++T++YYR A G LV+ + +++ + W
Sbjct: 45 FGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLT 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFL 704
+ I LIGNK D L+ D+ E A L F +SA +N+++ FL
Sbjct: 105 DARNLTNPNTVIMLIGNKKD-LEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFL 163
>gi|464564|sp|P35292|RB17_MOUSE RAS-RELATED PROTEIN RAB-17 >gi|423554|pir||A46434 ras-related
GTP-binding protein Rab17 - mouse (fragment)
>gi|297157|emb|CAA50071| (X70804) rab17 [Mus musculus]
Length = 214
Score = 74.5 bits (180), Expect = 8e-13
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ +K + + SLKL+IWDTAGQE++ S+ Y+R AN LV+ + SF +W E
Sbjct: 55 FFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLE 114
Query: 531 GIVAEV-GNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFL 704
+ E ++ + L+GNK DL ++ + + A + +L F TSA N + +IF
Sbjct: 115 DLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFN 174
Query: 705 EMGERMLK 728
+ + +L+
Sbjct: 175 TVAQELLQ 182
>gi|1370186|emb|CAA98170| (Z73942) RAB7C [Lotus japonicus]
Length = 206
Score = 74.5 bits (180), Expect = 8e-13
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ LQIWDTAGQERF S+ +YR A+ LV+ + +SFD ++ W
Sbjct: 44 DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR 103
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQN 680
E + + + P +IGNK D +D N E K A+ N+ +F TSA
Sbjct: 104 EEFLIQASPSDPENFPFVVIGNKID-IDGGNSRVVSEKKARAWCASKGNIPYFETSAKGG 162
Query: 681 KNIDKIFLEMGERMLKIGHKME 746
N+++ F + + LK G + E
Sbjct: 163 INVEEAFQCIAKNALKSGEEEE 184
>gi|2350954|dbj|BAA22004| (AB002764) Ras-related protein RAB7 [Entamoeba histolytica]
Length = 169
Score = 74.1 bits (179), Expect = 1e-12
Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +K++V++ + +QIWDTAG ERF S+ +YR A+ L + + D ++F+ ++ W
Sbjct: 41 DFLTKDLVVDNHEVTMQIWDTAGNERFQSLGVAFYRGADCCALCYDVNDPKTFESLNNWR 100
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDI---KRFETKATNMNLRFFPTSALQNKN 686
E + + + P ++GNK D + D K + + + N+ FF TSA N
Sbjct: 101 EEFLVQASPKNQDQFPFVVLGNKVDTYEGSPDAIKKKAEQWCSEHFNIPFFETSAKNATN 160
Query: 687 IDKIFLEMG 713
+D F +G
Sbjct: 161 VDAGFQSIG 169
>gi|1020093|dbj|BAA06702| (D31906) mgp2 GTP-binding protein [Zea mays]
Length = 216
Score = 74.1 bits (179), Expect = 1e-12
Identities = 44/148 (29%), Positives = 76/148 (50%), Gaps = 9/148 (6%)
Query: 246 FKILILGEXM*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQER 425
FK++++G+ + ++++ I + +K QIWDTAGQER
Sbjct: 12 FKVVVIGDSGVGKSQLLMGFARNHNLESKSTIGVEFATRSIRFEDKVVKAQIWDTAGQER 71
Query: 426 FHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKYDL---- 593
+ +IT YYR A G LV+ + +F+ +++W + + ++I I L+GNK DL
Sbjct: 72 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 131
Query: 594 ---LDDMNDIKRFETKATNMNLRFFPTSALQN--KNI 689
+D E+ N+R+ TSAL+ KN+
Sbjct: 132 AVATEDAKAFAEMESTFFMGNIRYGETSALKEAFKNV 168
>gi|3914557|sp|Q40787|RAB7_PENCL RAS-RELATED PROTEIN RAB7 (POSSIBLE APOSPORY-ASSOCIATED PROTEIN)
>gi|1155265 (U40219) possible apospory-associated
protein [Pennisetum ciliare]
Length = 206
Score = 74.1 bits (179), Expect = 1e-12
Identities = 52/169 (30%), Positives = 85/169 (49%), Gaps = 10/169 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA+ ++ K++ILG+ + N ++ +KE+ LQ
Sbjct: 1 MASRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LV+ + +SFD ++ W E + + ++ P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
L+GNK D +D N E K A+ N+ +F TSA + N++ F + + LK
Sbjct: 121 VLLGNKVD-VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALK 178
>gi|4566765|gb|AAD23450|AF116859_1 (AF116859) small GTPase rabE [Dictyostelium discoideum]
Length = 228
Score = 70.2 bits (169), Expect = 1e-12
Identities = 45/114 (39%), Positives = 70/114 (60%), Gaps = 10/114 (8%)
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV--GND- 557
++LQ+WD AGQERF S+T+ YY+ A G + F + +F+ + KW I ++V G D
Sbjct: 74 VRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADE 133
Query: 558 --IPIFLIGNKYDLLDD-----MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
IP+ L+ NK DL D ND+ ++ N + +F TSA +N NI+K + +
Sbjct: 134 KPIPVVLLANKCDLGKDAFIKTANDMDKY--CKDNGFIGWFETSAKENMNIEKAARFLVD 191
Query: 717 RMLK 728
+LK
Sbjct: 192 HILK 195
Score = 23.9 bits (50), Expect = 1e-12
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 278 GKTSILQRFISDTFTYSIINTV 343
GKTSI++RF+ + F+ +T+
Sbjct: 36 GKTSIIKRFVHNIFSMHYKSTI 57
>gi|131838|sp|P23640|RB27_RAT RAS-RELATED PROTEIN RAB-27A (RAB-27) (GTP-BINDING PROTEIN RAM)
>gi|111731|pir||S12959 GTP-binding protein ram - rat
>gi|452229|dbj|BAA04167| (D17352) low Mr GTP-binding
protein [Rattus sp.] >gi|227333|prf||1702217A GTP
binding protein ram [Rattus norvegicus]
Length = 221
Score = 71.0 bits (171), Expect = 1e-12
Identities = 40/106 (37%), Positives = 61/106 (56%), Gaps = 3/106 (2%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
G+ + LQ+WDTAGQERF S+T ++R+A G L+F + +++SF + W + +
Sbjct: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
Query: 558 IP-IFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDK 695
P I L GNK D L+D +K E + A + +F TSA NI +
Sbjct: 125 NPDIVLCGNKSD-LEDQRAVKEEEARELAEKYGIPYFETSAANGTNISQ 172
Score = 23.1 bits (48), Expect = 1e-12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS+L ++ F I TV
Sbjct: 20 VGKTSVLYQYTDGKFNSKFITTV 42
>gi|1173334|sp|P41925|RYL2_YARLI RAS-LIKE GTP-BINDING PROTEIN RYL2 >gi|173259 (L06970) ras-like
protein [Yarrowia lipolytica]
Length = 209
Score = 73.7 bits (178), Expect = 1e-12
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++S K +V+N +++LQIWDTAGQERF S+ YYR+A L + + SFD + W
Sbjct: 41 SFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSATCGILCYDVTSRASFDAMHLWL 100
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDD 602
+ + +DI I ++G K DL+ D
Sbjct: 101 LELKQNLSSDIIIHIVGTKVDLVKD 125
>gi|3876435|emb|CAB04205| (Z81516) Similarity to Human RAS-related protein RAB-5A
(SW:P20339); cDNA EST EMBL:T00417 comes from this gene;
cDNA EST EMBL:T01542 comes from this gene
[Caenorhabditis elegans]
Length = 208
Score = 73.7 bits (178), Expect = 1e-12
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ ++ + ++ ++K +IWDTAGQER+HS+ YYR A +V+ + + SF W +
Sbjct: 56 FLTQTVCLDDATIKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQESFQKAKNWVK 115
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ + +I + L GNK D+ + + + A + L F TSA + N++ IF+
Sbjct: 116 ELQRQASPNIVMALAGNKADVANKRTVEYEEANAYAEDNALLFMETSAKTSMNVNDIFMA 175
Query: 708 MGERM 722
+ +++
Sbjct: 176 IAKKL 180
>gi|439546 (U03618) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 126
Score = 73.4 bits (177), Expect = 2e-12
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ +K+++I + +K+QIWDTAGQE F SIT++YYR + G LV+ + +F+ W
Sbjct: 25 FGAKQMIIKSKVIKIQIWDTAGQESFRSITRSYYRGSIGAILVYDVTRSETFENATIWVN 84
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK 632
I ++I I L+ NK D L DM + E K
Sbjct: 85 EIKKYGNDNIVIILVANKTD-LSDMRKVSEDEAK 117
>gi|3875761|emb|CAB07357| (Z92830) similar to RAS related protein [Caenorhabditis elegans]
Length = 203
Score = 73.4 bits (177), Expect = 2e-12
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ + + I+ + +KL +WDT GQERF S+ +YYR+A G LV+ + SF ++ W
Sbjct: 43 FGFRNLEIDRKKVKLHVWDTCGQERFRSLVGSYYRHAIGALLVYDITSRESFYHLEHWLT 102
Query: 531 GIVAEVGNDIPIFLIGNKYDLLDDMNDIK-RFETKATNMNLRFFPTSALQNKNIDKIFLE 707
+ DI I LIGNK DL D K E A L F SA N+ +++ F+
Sbjct: 103 DLQRLGDPDIVIVLIGNKSDLEADREVRKEEGEAFAREFGLIFMEISAKTNEYVEEAFVN 162
Query: 708 MGERMLK---------IGHKMEKKGLNV 764
+ + I K +KK +N+
Sbjct: 163 SAHEIYRKLNFGIIKEICVKKKKKKMNI 190
>gi|2500071|sp|Q14088|GS10_HUMAN SMALL GTP-BINDING PROTEIN S10 >gi|1785853|dbj|BAA03606| (D14889)
small GTP-binding protein, S10 [Homo sapiens]
Length = 237
Score = 73.4 bits (177), Expect = 2e-12
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKI+++G+ + + + F ++ K + I GE +K+Q+WDTAGQE
Sbjct: 37 FKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
Query: 423 RFH-SITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAE-VGNDIPIFLIGNKYDLL 596
RF S+ ++YYRN + + V+ + SF + W + V +P L+GNK DL
Sbjct: 97 RFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLR 156
Query: 597 DDMNDIKRFETK-ATNMNLRFFPTSA---LQNKNIDKIFLEMGERM 722
+ + K A N+ F TSA +++N++ IF+ + R+
Sbjct: 157 EQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRL 202
>gi|2500072|sp|P97950|GS10_MOUSE SMALL GTP-BINDING PROTEIN S10 >gi|1841348|dbj|BAA11882| (D83277)
small GTP-binding protein S10 [Mus musculus]
>gi|1841350|dbj|BAA11883| (D83279) small GTP-binding
protein S10 [Mus musculus]
Length = 237
Score = 73.4 bits (177), Expect = 2e-12
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKI+++G+ + + + F ++ K + I GE +K+Q+WDTAGQE
Sbjct: 37 FKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
Query: 423 RFH-SITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAE-VGNDIPIFLIGNKYDLL 596
RF S+ ++YYRN + + V+ + SF + W + V +P L+GNK DL
Sbjct: 97 RFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLR 156
Query: 597 DDMNDIKRFETK-ATNMNLRFFPTSA---LQNKNIDKIFLEMGERM 722
+ + K A N+ F TSA +++N++ IF+ + R+
Sbjct: 157 EQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRL 202
>gi|1235593|emb|CAA65444| (X96663) GTPase [Rattus norvegicus]
Length = 204
Score = 67.5 bits (162), Expect = 2e-12
Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV-- 548
+ E ++LQ+WD AGQERF S+T+ YYR+A+ ++F + + +F +W + + +++
Sbjct: 53 DSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTL 112
Query: 549 --GNDIPIFLIGNKYDLLD---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
G +P L+ NK DL + I RF + N + TS +NKNI++ +
Sbjct: 113 PSGEPVPCLLLANKSDLSPWAVSRDQIDRFSKE--NGFTGWTETSVKENKNINEAMRVLV 170
Query: 714 ERML 725
E+M+
Sbjct: 171 EKMM 174
Score = 25.8 bits (55), Expect = 2e-12
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS++QR+ D+F+ +TV
Sbjct: 18 VGKTSLVQRYSQDSFSKHYKSTV 40
>gi|2500069|sp|Q13636|RB31_HUMAN RAS-RELATED PROTEIN RAB-31 >gi|1388195 (U59877) low-Mr GTP-binding
protein Rab31 [Homo sapiens]
Length = 194
Score = 66.0 bits (158), Expect = 2e-12
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +K + E K IWDTAGQERFHS+ YYR + +V+ + SF + KW
Sbjct: 41 SFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWV 100
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ + +I + + GNK DL D + D K + A ++ TSA NI++
Sbjct: 101 KELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY---AESIGAIVVETSAKNAINIEE 157
Query: 696 IF 701
+F
Sbjct: 158 LF 159
Score = 27.4 bits (59), Expect = 2e-12
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQR 364
VGK+SI+ RF+ D F ++I T+ F +
Sbjct: 16 VGKSSIVCRFVQDHFDHNISPTIGASFMTK 45
>gi|2118484|pir||JC4961 rab protein 22B - human >gi|1457954 (U57091) Rab22b [Homo sapiens]
Length = 194
Score = 66.0 bits (158), Expect = 2e-12
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +K + E K IWDTAGQERFHS+ YYR + +V+ + SF + KW
Sbjct: 41 SFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWV 100
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ + +I + + GNK DL D + D K + A ++ TSA NI++
Sbjct: 101 KELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY---AESIGAIVVETSAKNAINIEE 157
Query: 696 IF 701
+F
Sbjct: 158 LF 159
Score = 27.4 bits (59), Expect = 2e-12
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQR 364
VGK+SI+ RF+ D F ++I T+ F +
Sbjct: 16 VGKSSIVCRFVQDHFDHNISPTIGASFMTK 45
>gi|1710003|sp|P51151|RAB9_HUMAN RAS-RELATED PROTEIN RAB-9 >gi|1174147 (U44103) small GTP binding
protein Rab9 [Homo sapiens]
Length = 201
Score = 73.0 bits (176), Expect = 2e-12
Identities = 49/182 (26%), Positives = 90/182 (48%), Gaps = 12/182 (6%)
Query: 234 KQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDT 410
K FK+++LG+ + N + +K++ ++G + +QIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 411 AGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV----AEVGNDIPIFLIG 578
AGQERF S+ +YR ++ L FS+ D +SF + W + + + P ++G
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 579 NKYDLLDDMNDIKRFETKA---TNMNLRFFPTSALQNKNIDKIFLEMGERML----KIGH 737
NK D+ + + E +A N + +F TSA N+ F E R+L + H
Sbjct: 124 NKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDH 181
Query: 738 KMEKKGLNVNRRKR 779
++ +N++R+ +
Sbjct: 182 LIQTDTVNLHRKPK 195
>gi|1589843 (U68768) rab10 GTPase homolog SUrab10 [Strongylocentrotus
purpuratus]
Length = 63
Score = 73.0 bits (176), Expect = 2e-12
Identities = 32/63 (50%), Positives = 41/63 (64%)
Query: 402 WDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGN 581
WDTAGQERFH+IT +YYR A GI LV+ + +++FD I KW I D+ L+GN
Sbjct: 1 WDTAGQERFHTITTSYYRGAMGIMLVYDITQEKTFDNIAKWLRNIQEHANEDLEKMLLGN 60
Query: 582 KYD 590
K D
Sbjct: 61 KCD 63
>gi|548667|sp|P36411|RAB7_DICDI RAS-RELATED PROTEIN RAB7 >gi|414971 (U02928) Rab7 [Dictyostelium
discoideum]
Length = 203
Score = 73.0 bits (176), Expect = 2e-12
Identities = 44/170 (25%), Positives = 88/170 (50%), Gaps = 7/170 (4%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA K+ K++ILG+ + N ++ +KE++++ + +Q
Sbjct: 1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ L + + ++F+ +D W + + + G ++ P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120
Query: 567 FLIGNKYDLLDD--MNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKI 731
++GNK DL + ++ + + N+ +F TSA + N+++ F + +K+
Sbjct: 121 VVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKL 177
>gi|2388544|dbj|BAA22160| (D84488) small GTP-binding protein [Homo sapiens]
>gi|4506375|ref|NP_003920.1|pRAB7L1| UNKNOWN
Length = 203
Score = 67.1 bits (161), Expect = 3e-12
Identities = 39/116 (33%), Positives = 69/116 (58%), Gaps = 7/116 (6%)
Query: 381 ESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV---- 548
E ++LQ+WD AGQERF S+T+ YYR+A+ ++F + + +F +W + + +++
Sbjct: 55 EIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPN 114
Query: 549 GNDIPIFLIGNKYDLLD---DMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGER 719
G +P L+ NK DL + I RF + N + TS +NKNI++ + E+
Sbjct: 115 GEPVPCLLLANKCDLSPWAVSRDQIDRFSKE--NGFTGWTETSVKENKNINEAMRVLIEK 172
Query: 720 MLK 728
M++
Sbjct: 173 MMR 175
Score = 25.8 bits (55), Expect = 3e-12
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS++QR+ D+F+ +TV
Sbjct: 18 VGKTSLVQRYSQDSFSKHYKSTV 40
>gi|3875377|emb|CAA87774| (Z47808) similar to GTP binding protein (YPT1 subfamily)
[Caenorhabditis elegans]
Length = 217
Score = 72.6 bits (175), Expect = 3e-12
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
G +KLQ+WDTAGQE+F SITK+YYRN+ G+ ++ + SF+ ++ W + +G
Sbjct: 64 GYRVKLQLWDTAGQEKFRSITKSYYRNSVGVLAIYDTTNRESFEHVENWVKEAALNLGGP 123
Query: 558 IP---IF-LIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
P +F L+G K D +D + E + A ++F TS+ N+++ F
Sbjct: 124 SPSKCVFQLVGTKSD-MDSQRQVNYEEGEYFAKYHKMKFIETSSRTGDNVNEAF 176
>gi|1370172|emb|CAA98163| (Z73935) RAB1X [Lotus japonicus]
Length = 208
Score = 72.6 bits (175), Expect = 3e-12
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 246 FKILILGEXM*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQER 425
FKIL++G+ + ++ K + + G+ LKL +WDTAGQER
Sbjct: 12 FKILLIGDSGVGKSSLLVSFISSSVEDQSPTIGVDFKIKMLTVGGKRLKLTLWDTAGQER 71
Query: 426 FHSITKNYYRNANGIFLVFSMIDDRSFDCIDK-WYEGIVAEVGN-DIPIFLIGNKYDLLD 599
F ++T +YYR A GI LV+ + +F + + W + + N D L+GNK D D
Sbjct: 72 FRTLTSSYYRGAQGIILVYDVTKRETFTNLSEVWSKELELYSNNQDCVKMLVGNKVD-RD 130
Query: 600 DMNDIKRFE--TKATNMNLRFFPTSALQNKNIDKIFLEMGERMLKIGHKMEKKGLNVNR 770
+ R E A + SA +N+++ F E+ ++++ +E+ V R
Sbjct: 131 AARAVSREEGLALAKELGCLLIECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKR 189
>gi|206543 (M94043) rab-related GTP-binding protein [Rattus norvegicus]
Length = 211
Score = 69.5 bits (167), Expect = 3e-12
Identities = 38/103 (36%), Positives = 64/103 (61%), Gaps = 7/103 (6%)
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV----GN 554
++LQ+WD AGQERF ++T+ YYR A G F+VF + +F+ + KW + +++ G
Sbjct: 59 VRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGK 118
Query: 555 DIPIFLIGNKYDLLDDM---NDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ + L+ NK D D+ N +K + + + +F TSA +N NID+
Sbjct: 119 PVSVVLLANKCDQGKDVLVNNGLKMDQFCKEHGFVGWFETSAKENINIDE 168
Score = 23.1 bits (48), Expect = 3e-12
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 275 VGKTSILQRFISDTFT 322
VGKTSI++R++ F+
Sbjct: 20 VGKTSIIKRYVHQNFS 35
>gi|439532 (U03611) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 126
Score = 72.2 bits (174), Expect = 4e-12
Identities = 37/101 (36%), Positives = 57/101 (55%), Gaps = 1/101 (0%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDK-W 524
++ K + ++ + LKLQIWDTAGQERF +IT YY+ A+ I +V+ +SFD I+K W
Sbjct: 24 DFRFKTLKVDNKGLKLQIWDTAGQERFRTITNAYYKGADAIVIVYDTTCQQSFDDIEKFW 83
Query: 525 YEGIVAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNL 650
I + + + +GNK DL +R + A N+
Sbjct: 84 LNEIESYAEKNAELLFLGNKSDLSTKQVQSERVQEYAQKRNM 125
>gi|2815620 (AF032713) c-Ki-ras-2 protooncogene [Oryzias latipes]
Length = 189
Score = 72.2 bits (174), Expect = 4e-12
Identities = 47/139 (33%), Positives = 74/139 (52%), Gaps = 5/139 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPTRTVDTKQAQDLARSFGIPFIETSAKTRQRVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEKKGLNVNRRK 776
E+ + L K EK VN +K
Sbjct: 162 EIRQYRLSKLSKEEKTPRCVNLKK 185
>gi|1055116 (U39996) coded for by C. elegans cDNA CEESY59F; similar to
RAS-related, GTP-binding proteins. [Caenorhabditis
elegans]
Length = 368
Score = 72.2 bits (174), Expect = 4e-12
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
+Y +E V+ +LQ+WDTAGQERF + Y RNA+ +V+ + D +F+ ++KW
Sbjct: 97 DYRDREDVV-----RLQVWDTAGQERFRCMVPMYMRNADAALIVYDVTDRNTFEDVEKWL 151
Query: 528 EGIVAEVG-NDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQ-----NK 683
+ + G D ++LIGNK DL+ + ++ E K A +N +FF S Q +
Sbjct: 152 KDLDRSSGTEDANVYLIGNKTDLV-EKREVTEAEGKAMAAKINAKFFELSNDQPNCNVRR 210
Query: 684 NIDKIFLEMGERMLKIGHKMEKKGLNVNRR 773
N + F +I K + +N R+
Sbjct: 211 NSIRTFRRCSPIPARILRKENRSSINSKRK 240
>gi|1399721 (U56930) R-ras1 homolog [Caenorhabditis elegans] >gi|1399727
(U56933) GTP binding protein [Caenorhabditis elegans]
Length = 212
Score = 72.2 bits (174), Expect = 4e-12
Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
+K+ ++ + KL+I DTAGQE F ++ + Y R +G +VF++ D SF+ + K +E I
Sbjct: 55 TKQCFVDEDLCKLEILDTAGQEEFSTMREQYLRTGSGFLIVFAVTDRNSFEEVKKLHELI 114
Query: 537 V-AEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFLE 707
+ +D PI L+GNK D L++ + R E + A +++ + SA KN+D+ F +
Sbjct: 115 CRIKDRDDFPIILVGNKAD-LENERHVARHEAEELAHRLSIPYLECSAKIRKNVDEAFFD 173
Query: 708 MGERMLKIGH 737
+ + K H
Sbjct: 174 IVRLVRKYQH 183
>gi|623588 (L29274) putative [Nicotiana tabacum]
Length = 206
Score = 72.2 bits (174), Expect = 4e-12
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 10/169 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MAA ++ K++ILG+ + N ++ +KEI LQ
Sbjct: 1 MAARRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEIQFEDRLYTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LV+ + +SF+ ++ W E + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYYVNVMKSFENLNNWREEFLIQASPSDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK D +D N E K A+ N+ +F TSA + N+D F + + LK
Sbjct: 121 IVLGNKID-VDGGNSRVVSEKKVKAWCASKGNIPYFETSAKEGFNVDAAFQCIAKNALK 178
>gi|479657|pir||S35058 GTP-binding protein S10 - human >gi|449433|prf||1919262A
GTP-binding protein S10 [Homo sapiens]
Length = 237
Score = 72.2 bits (174), Expect = 4e-12
Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 246 FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDTAGQE 422
FKI+++G+ + + F ++ K + I GE +K+Q+WDTAGQE
Sbjct: 37 FKIIVIGDSNVGKTCPTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
Query: 423 RFH-SITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAE-VGNDIPIFLIGNKYDLL 596
RF S+ ++YYRN + + V+ + SF + W + V +P L+GNK DL
Sbjct: 97 RFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLR 156
Query: 597 DDMNDIKRFETK-ATNMNLRFFPTSA---LQNKNIDKIFLEMGERM 722
+ + K A N+ F TSA +++N++ IF+ + R+
Sbjct: 157 EQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRL 202
>gi|1931577 (U57094) Rab27a [Homo sapiens]
Length = 221
Score = 69.1 bits (166), Expect = 4e-12
Identities = 40/106 (37%), Positives = 60/106 (55%), Gaps = 3/106 (2%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
G+ + LQ+WDTAGQERF S+T ++R+A G L+F + +++SF + W + +
Sbjct: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
Query: 558 IP-IFLIGNKYDLLDDMNDIKRFE--TKATNMNLRFFPTSALQNKNIDK 695
P I L GNK D L+D +K E A + +F TSA NI +
Sbjct: 125 NPDIVLCGNKSD-LEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQ 172
Score = 23.1 bits (48), Expect = 4e-12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS+L ++ F I TV
Sbjct: 20 VGKTSVLYQYTDGKFNSKFITTV 42
>gi|4572590|gb|AAC50271| (U38654) Rab27 [Homo sapiens]
Length = 221
Score = 69.1 bits (166), Expect = 4e-12
Identities = 40/106 (37%), Positives = 60/106 (55%), Gaps = 3/106 (2%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
G+ + LQ+WDTAGQERF S+T ++R+A G L+F + +++SF + W + +
Sbjct: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
Query: 558 IP-IFLIGNKYDLLDDMNDIKRFE--TKATNMNLRFFPTSALQNKNIDK 695
P I L GNK D L+D +K E A + +F TSA NI +
Sbjct: 125 NPDIVLCGNKSD-LEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQ 172
Score = 23.1 bits (48), Expect = 4e-12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS+L ++ F I TV
Sbjct: 20 VGKTSVLYQYTDGKFNSKFITTV 42
>gi|280689|pir||A37355 transforming protein (ras) - African clawed frog >gi|214681
(M34657) ras protein [Xenopus laevis]
Length = 186
Score = 71.8 bits (173), Expect = 5e-12
Identities = 43/131 (32%), Positives = 73/131 (54%), Gaps = 5/131 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ + + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDVHHYREQIN 101
Query: 537 VAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ +D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPSRTVDTKQAQELAKSYGIPFIETSAKTRQGVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEKK 752
E+ + KI + +KK
Sbjct: 162 EIRKHKEKISNGKKKK 177
>gi|2854135 (AF045637) Similar to RAS-related protein; coded for by C. elegans
cDNA yk83f3.3; coded for by C. elegans cDNA yk83f3.5
[Caenorhabditis elegans]
Length = 231
Score = 71.8 bits (173), Expect = 5e-12
Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
+K+ ++ + KL+I DTAGQE F ++ + Y R +G +VF++ D SF+ + K +E I
Sbjct: 55 TKQCFVDEDLCKLEILDTAGQEEFSTMREQYLRTGSGFLIVFAVTDRNSFEEVKKLHELI 114
Query: 537 V-AEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFLE 707
+ +D PI L+GNK D L++ + R E + A +++ + SA KN+D+ F +
Sbjct: 115 CRIKDRDDFPIILVGNKAD-LENERHVARHEAEELAHRLSIPYLECSAKIRKNVDEAFFD 173
Query: 708 MGERMLKIGH 737
+ + I H
Sbjct: 174 IVRLVSPIRH 183
>gi|2129843|pir||S52647 small GTP-binding protein gmr1 - soybean (fragment)
Length = 155
Score = 71.8 bits (173), Expect = 5e-12
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
Query: 396 QIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLI 575
QIWDTAGQERF ++T YYR A G +V+ + +FD + +W + + + + L+
Sbjct: 1 QIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLV 60
Query: 576 GNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKN--------IDKIFLEMGERML 725
GNK D L+++ + E K A L+F TSAL + N I +I+ + ++L
Sbjct: 61 GNKCD-LENIRAVSVDEGKSLAEAEGLQFMETSALDSTNVKTAQEMVIREIYTNVSRKVL 119
Query: 726 KIGHKMEKKGLNVNR 770
+ K L+VNR
Sbjct: 120 --NSETYKAELSVNR 132
>gi|68936|pir||TVMSK transforming protein K-ras - mouse
Length = 227
Score = 71.4 bits (172), Expect = 7e-12
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEK 749
E+ + LK K EK
Sbjct: 162 EIRQYRLKKISKEEK 176
>gi|3023915|sp|Q20365|GS10_CAEEL PUTATIVE RAS-RELATED PROTEIN F43D9.2 >gi|3877055|emb|CAA84705|
(Z35640) GTP-binding protein S10 (human) homolog
[Caenorhabditis elegans]
Length = 307
Score = 71.4 bits (172), Expect = 7e-12
Identities = 53/166 (31%), Positives = 90/166 (53%), Gaps = 13/166 (7%)
Query: 213 PNPMAAIKQER-FKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGES 386
P+ KQ+R FK++I+G + + + F ++ + VI E
Sbjct: 89 PSSTKTYKQKRTFKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENEL 148
Query: 387 LKLQIWDTAGQERF-HSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE-----GIVAEV 548
L++Q+WDTAGQER+ SI +YYRN N + V+ + SF+ + W + G+V +
Sbjct: 149 LRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKECEKHGLVGD- 207
Query: 549 GNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTS---ALQNKNIDKIFLEM 710
+++P LIGNK D ++ N + E + A N+ F TS A + +++ IFL +
Sbjct: 208 -SEVPRILIGNKCD-VECTNRVSTDEAQMFADRNNMALFETSAKLASEADHVESIFLTL 264
>gi|131875|sp|P01116|RASK_HUMAN TRANSFORMING PROTEIN P21/K-RAS 2A >gi|68935|pir||TVHUK transforming
protein K-ras-2, minor splice form - human >gi|190909
(L00049) cellular transforming proto-oncogene [Homo
sapiens] >gi|223753|prf||0909262A protein c-Ki-ras2
[Homo sapiens]
Length = 189
Score = 71.4 bits (172), Expect = 7e-12
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEK 749
E+ + LK K EK
Sbjct: 162 EIRQYRLKKISKEEK 176
>gi|417590|sp|P32883|RASK_MOUSE TRANSFORMING PROTEIN P21/K-RAS 2A
Length = 189
Score = 71.4 bits (172), Expect = 7e-12
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEK 749
E+ + LK K EK
Sbjct: 162 EIRQYRLKKISKEEK 176
>gi|223752|prf||0909261A protein Calu1 Ki-ras [Homo sapiens]
Length = 189
Score = 71.4 bits (172), Expect = 7e-12
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEK 749
E+ + LK K EK
Sbjct: 162 EIRQYRLKKISKEEK 176
>gi|1020092|dbj|BAA06701| (D31905) mgp1 GTP-binding protein [Zea mays]
Length = 211
Score = 71.4 bits (172), Expect = 7e-12
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ + +W +
Sbjct: 50 FATRSIRFEDKVVKAQIWDTAGQERYLAITSAYYRGAAGALLVYDVTRHATFETVGRWLK 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ ++I I L+GNK DL D K F K + FF ++ Q+ N+
Sbjct: 110 ELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAKAFAEKES----IFFMETSAQDTNVKTS 165
Query: 699 F 701
F
Sbjct: 166 F 166
>gi|3845201 (AE001399) RAB GTPase [Plasmodium falciparum]
Length = 235
Score = 71.4 bits (172), Expect = 7e-12
Identities = 45/133 (33%), Positives = 64/133 (47%), Gaps = 2/133 (1%)
Query: 384 SLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIP 563
++K IWDTAGQER+ SI YYR A +VF + + + D W + ++ ++
Sbjct: 91 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL--KISSNYI 148
Query: 564 IFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERMLK--IGH 737
I L+ NK D DI + A + NL F TSA NI IF + E + K I +
Sbjct: 149 IILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIINN 208
Query: 738 KMEKKGLNVNRRKRN 782
K VN+ N
Sbjct: 209 NNTSKNKTVNKNLIN 223
>gi|3551877 (AF081681) GTP binding protein RARE7L [Dictyostelium discoideum]
Length = 232
Score = 69.1 bits (166), Expect = 7e-12
Identities = 37/118 (31%), Positives = 64/118 (53%), Gaps = 9/118 (7%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
+Y KE+ + + + L +WDT GQERF + + Y+R AN L F + ++ SF + KW
Sbjct: 43 DYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWM 102
Query: 528 EGIVAEVGNDIPIFLIGNKYDLLDDMNDI---------KRFETKATNMNLRFFPTSALQN 680
+ I+ +IP L+G K D+ I K E + + +F TSA +
Sbjct: 103 DEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLS 162
Query: 681 KNIDKIF 701
+N+ +++
Sbjct: 163 QNVTELY 169
Score = 22.3 bits (46), Expect = 7e-12
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 272 NVGKTSILQRFISDTFTYS 328
NVGKTS+ +++ + Y+
Sbjct: 17 NVGKTSLFYHYVNGEYRYN 35
>gi|1419156|emb|CAA65717| (X96991) putative GTP-binding protein [Petunia x hybrida]
Length = 91
Score = 71.0 bits (171), Expect = 9e-12
Identities = 37/90 (41%), Positives = 54/90 (59%), Gaps = 3/90 (3%)
Query: 402 WDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGN 581
WDTAGQERF +IT +YYR A+GI +V+ + D SF+ + +W I +++ L+GN
Sbjct: 1 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLSEIDRYASDNVNKLLVGN 60
Query: 582 KYDLLDDMNDIKRFETK---ATNMNLRFFPTSA 671
K DL D N ++T A + + F TSA
Sbjct: 61 KCDLAD--NRAVSYDTAKAFADEIGIPFMETSA 91
>gi|585773|sp|P24408|RAB9_CANFA RAS-RELATED PROTEIN RAB-9 >gi|486830|pir||S36187 GTP-binding
protein rab9 - dog
Length = 201
Score = 71.0 bits (171), Expect = 9e-12
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 12/182 (6%)
Query: 234 KQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDT 410
K FK+++LG+ + N + +K++ ++G + +QIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 411 AGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV----AEVGNDIPIFLIG 578
AGQERF S+ +YR ++ L FS+ D +SF + W + + + P ++G
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 579 NKYDLLDDMNDIKRFETKA---TNMNLRFFPTSALQNKNIDKIFLEMGERML----KIGH 737
NK D+ + + E +A N + +F TSA N+ F E R+L + H
Sbjct: 124 NKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDH 181
Query: 738 KMEKKGLNVNRRKR 779
++ ++++R+ +
Sbjct: 182 LIQTDTVSLHRKPK 195
>gi|1877404|emb|CAA68210| (X99951) localizes adjacent and posterior to kinetoplast
[Trypanosoma brucei]
Length = 219
Score = 71.0 bits (171), Expect = 9e-12
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 15/113 (13%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
+ ++ LQIWDT+GQ+RF S+T YYRN +G + F + + SF+ ID W+E + +
Sbjct: 54 HARTILLQIWDTSGQDRFVSLTTAYYRNCHGALICFDLTNRSSFEGIDAWFERLRSHCPV 113
Query: 555 DIPIFLIGNKYDL------------LDDMNDIKRFETKATNMN---LRFFPTSALQNKNI 689
P+ L+G K DL L +++ E A L +F TS+ N N+
Sbjct: 114 LPPLILVGCKLDLVECSELHKEGTSLGICRQVEKSEADAWAKRHGCLCYFETSSRNNTNV 173
Query: 690 DKIFLEMG 713
+ F +G
Sbjct: 174 SEAFQHLG 181
>gi|3334309|sp|Q91806|RASN_XENLA TRANSFORMING PROTEIN P21/N-RAS >gi|539484|pir||A48088 GTP-binding
protein N-ras - African clawed frog >gi|295534 (M97960)
N-ras [Xenopus laevis]
Length = 189
Score = 71.0 bits (171), Expect = 9e-12
Identities = 39/114 (34%), Positives = 64/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF I+ + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINAYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQGVEDAF 156
>gi|131886|sp|P05774|RAS_CARAU RAS-LIKE PROTEIN >gi|85494|pir||S05483 transforming protein (ras) -
goldfish (fragment) >gi|213013 (M26734) ras [Carassius
auratus]
Length = 183
Score = 71.0 bits (171), Expect = 9e-12
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRSVDTKQAQDLARSYGIPFIETSAKTRQRVEDAF 156
>gi|3599487 (AF085280) Ras protein [Xenopus laevis]
Length = 188
Score = 71.0 bits (171), Expect = 9e-12
Identities = 42/141 (29%), Positives = 73/141 (50%), Gaps = 1/141 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R VF++ + +SF+ I + + I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEAFLCVFAINNIKSFEDIHHYRDEIN 101
Query: 540 A-EVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ D+P+ L+GNK DL D K+ + A + + F TS + +D F +
Sbjct: 102 GVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSTKTRQGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKRN 782
+ K HK + K ++K++
Sbjct: 162 EIRK--HKEKMKQRQAKKKKKS 181
>gi|623590 (L29275) putative [Nicotiana tabacum]
Length = 205
Score = 71.0 bits (171), Expect = 9e-12
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ +KE+ LQIWDTAGQERF S+ +YR A+ LV+ + +SF+ ++ W
Sbjct: 43 DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWR 102
Query: 528 EGIVAEVG----NDIPIFLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQN 680
E + + + P ++GNK D +D N E K A+ N+ +F TSA +
Sbjct: 103 EEFLIQASPSDPENFPFVVLGNKVD-IDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 161
Query: 681 KNIDKIFLEMGERMLKIGHKME 746
+++ F + + LK G + E
Sbjct: 162 TFVEEAFQCIAKNALKSGEEEE 183
>gi|2500068|sp|O00194|RB2B_HUMAN RAS-RELATED PROTEIN RAB-27B >gi|1931575 (U57093) Rab27b [Homo
sapiens]
Length = 218
Score = 71.0 bits (171), Expect = 9e-12
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 375 NGESLK--LQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV 548
+G++ K LQ+WDTAGQERF S+T ++R+A G L+F + +SF + W + A
Sbjct: 62 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 121
Query: 549 GNDIP-IFLIGNKYDLLD--DMNDIKRFETKATNMNLRFFPTSALQNKNIDK 695
+ P I LIGNK DL D ++N+ ++ A + +F TSA +N++K
Sbjct: 122 YCENPDIVLIGNKADLPDQREVNE-RQARELADKYGIPYFETSAATGQNVEK 172
>gi|1370188|emb|CAA98171| (Z73943) RAB7D [Lotus japonicus]
Length = 207
Score = 71.0 bits (171), Expect = 9e-12
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 10/169 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA+ ++ K++ILG+ + N ++ +KE+ LQ
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LV+ + +SFD ++ W E + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK D +D N E K A+ N+ +F TSA + N++ F + + LK
Sbjct: 121 VVLGNKID-VDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALK 178
>gi|4545231|gb|AAD22451|AF116243_1 (AF116243) RAS-related GTP-binding protein [Gossypium hirsutum]
Length = 207
Score = 71.0 bits (171), Expect = 9e-12
Identities = 52/169 (30%), Positives = 83/169 (48%), Gaps = 10/169 (5%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA+ ++ K++ILG+ + N ++ +KE+ + LQ
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ LV + +SFD ++ W E + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK D +D N E K A+ N+ +F TSA + N+D F + LK
Sbjct: 121 VVLGNKVD-VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALK 178
>gi|769801|emb|CAA54507| (X77302) GTP binding protein [Glycine max]
Length = 155
Score = 71.0 bits (171), Expect = 9e-12
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 396 QIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLI 575
QIWDTAGQERF ++T YYR A G +V+ + +FD + +W + + + + L+
Sbjct: 1 QIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLV 60
Query: 576 GNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIF 701
GNK D L+++ + E K A L F TSAL + N+ F
Sbjct: 61 GNKCD-LENIRAVSVDEGKSLAEAEGLFFMETSALDSTNVKTAF 103
>gi|1093939|prf||2105181A c-Ki-ras protooncogene [Rivulus marmoratus]
Length = 227
Score = 70.6 bits (170), Expect = 1e-11
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPTRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAF 156
>gi|2072749|emb|CAA73253| (Y12715) proto-oncogene K-Ras2A [Xenopus laevis]
Length = 189
Score = 70.6 bits (170), Expect = 1e-11
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEK 749
E+ + LK K EK
Sbjct: 162 EIRQFRLKKMSKEEK 176
>gi|3219964|sp|O13876|YE1B_SCHPO PUTATIVE RAS-RELATED PROTEIN C1B3.11C >gi|2330745|emb|CAB11239|
(Z98598) ras-related protein [Schizosaccharomyces pombe]
Length = 234
Score = 68.7 bits (165), Expect = 1e-11
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+KLQIWDTAGQE+F S+ +NYYR A G LV+ + + SF+ + W I A + I +
Sbjct: 62 IKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICV 121
Query: 567 FLIGNKYDL 593
L G+K DL
Sbjct: 122 VLAGSKSDL 130
Score = 21.9 bits (45), Expect = 1e-11
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 278 GKTSILQRFISDTFTYSIINTVDKLFFQR 364
GK+ +LQRF+ + + + +TV F R
Sbjct: 21 GKSCLLQRFVKNQWDDQVSHTVGIDFASR 49
>gi|2190|emb|CAA39797| (X56386) rab9 [Canis familiaris]
Length = 172
Score = 70.2 bits (169), Expect = 2e-11
Identities = 42/143 (29%), Positives = 79/143 (54%), Gaps = 11/143 (7%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ +K++ ++G + +QIWDTAGQERF S+ +YR ++ L FS+ D +SF + W +
Sbjct: 15 FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 74
Query: 531 GIV----AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKA---TNMNLRFFPTSALQNKNI 689
+ + P ++GNK D+ + + E +A N + +F TSA N+
Sbjct: 75 EFIYYADVKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNV 132
Query: 690 DKIFLEMGERML----KIGHKMEKKGLNVNRRKR 779
F E R+L + H ++ ++++R+ +
Sbjct: 133 AAAFEEAVRRVLATEDRSDHLIQTDTVSLHRKPK 166
>gi|172363 (K01971) RAS2 protein [Saccharomyces cerevisiae]
Length = 322
Score = 70.2 bits (169), Expect = 2e-11
Identities = 44/130 (33%), Positives = 68/130 (51%), Gaps = 2/130 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+ E L I DTAGQE + ++ + Y RN G LV+S+ S D + +Y+ I+
Sbjct: 49 KQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQIL 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D +PI ++GNK DL ++ + A MN F TSA Q N+++ F +
Sbjct: 109 RVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLA 168
Query: 714 ERMLKIGHKMEK 749
+ G K K
Sbjct: 169 RLVRDEGGKYNK 180
>gi|1710014|sp|P01120|RAS2_YEAST RAS-LIKE PROTEIN 2 >gi|2144594|pir||TVBYR2 GTP-binding protein RAS2
- yeast (Saccharomyces cerevisiae)
>gi|929855|emb|CAA90528| (Z50161) ORF N2198
[Saccharomyces cerevisiae] >gi|1302008|emb|CAA95974|
(Z71374) ORF YNL098c [Saccharomyces cerevisiae]
>gi|2447015|dbj|BAA22510| (D37950) ASC1/RAS2 protein
[Saccharomyces cerevisiae]
Length = 322
Score = 70.2 bits (169), Expect = 2e-11
Identities = 44/130 (33%), Positives = 68/130 (51%), Gaps = 2/130 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+ E L I DTAGQE + ++ + Y RN G LV+S+ S D + +Y+ I+
Sbjct: 49 KQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQIL 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D +PI ++GNK DL ++ + A MN F TSA Q N+++ F +
Sbjct: 109 RVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLA 168
Query: 714 ERMLKIGHKMEK 749
+ G K K
Sbjct: 169 RLVRDEGGKYNK 180
>gi|131882|sp|P12825|RASN_CAVPO TRANSFORMING PROTEIN P21/N-RAS >gi|68927|pir||TVGPRS GTP-binding
protein N-ras - guinea pig >gi|387062 (M15808) N-ras
peptide [Cavia porcellus] >gi|817937|emb|CAA42724|
(X60151) p21 protein [Cavia porcellus]
Length = 189
Score = 69.9 bits (168), Expect = 2e-11
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF I+ + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL D K+ A + + F TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLN 761
+ + ++M+K N
Sbjct: 162 EIRQ--YRMKKLNSN 174
>gi|3874153|emb|CAA97427| (Z73103) similar to RAS-related protein [Caenorhabditis elegans]
Length = 173
Score = 69.9 bits (168), Expect = 2e-11
Identities = 38/109 (34%), Positives = 66/109 (59%), Gaps = 15/109 (13%)
Query: 372 INGESLKLQIWDTAG--------------QERFHSITKNYYRNANGIFLVFSMIDDRSFD 509
++ E+ +L+I DTAG QE+F + + YYR A G LVFS+ + +F+
Sbjct: 46 VDAENARLEILDTAGTVKLSIQEIQHMLIQEQFTGMRETYYRTAQGFVLVFSLAETSTFE 105
Query: 510 CIDKWYEGIVAEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKN 686
+ + + I+A G ++P+ L+GNK DL + D A + + +F TSA N+N
Sbjct: 106 NLKQTFTDIIAIRGKEVPMILVGNKSDLAETRQVDESEAHNFAEKLKIPYFETSARLNQN 165
Query: 687 IDKI 698
+ ++
Sbjct: 166 VSEV 169
>gi|230680|pdb|2Q21| c-H-Ras p21 Protein Catalytic Domain (Mutant With Gly 12 Replaced
By Val) (G12V) Complex With GDP
Length = 171
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|230266|pdb|1Q21| c-H-Ras p21 Protein Catalytic Domain Complex With GDP
>gi|231226|pdb|6Q21|A Chain A, c-H-Ras p21 Protein
Catalytic Domain Complex With GDPCP
>gi|231227|pdb|6Q21|B Chain B, c-H-Ras p21 Protein
Catalytic Domain Complex With GDPCP
>gi|231228|pdb|6Q21|C Chain C, c-H-Ras p21 Protein
Catalytic Domain Complex With GDPCP
>gi|231229|pdb|6Q21|D Chain D, c-H-Ras p21 Protein
Catalytic Domain Complex With GDPCP
>gi|2392040|pdb|1AA9| Human C-Ha-Ras(1-171)(Dot)gdp,
Nmr, Minimized Average Structure
Length = 171
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|131869|sp|P01112|RASH_HUMAN TRANSFORMING PROTEIN P21/H-RAS-1 (C-H-RAS) >gi|68929|pir||TVHUH
transforming protein p21 (H-ras-1) - human
>gi|231061|pdb|4Q21| c-H-Ras p21 Protein Catalytic
Domain Complex With GDP >gi|35887|emb|CAA23837| (V00574)
c-Ha-ras-1 [Homo sapiens] >gi|190891 (J00277) c-Ha-ras1
p21 protein [Homo sapiens]
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|131883|sp|P01111|RASN_HUMAN TRANSFORMING PROTEIN P21/N-RAS >gi|68925|pir||TVHURA GTP-binding
protein N-ras - human >gi|35103|emb|CAA26529| (X02751)
N-ras gene product (aa 1-189) [Homo sapiens] >gi|190927
(L00043) N-ras oncogene [Homo sapiens] >gi|208911
(M14307) N-ras [Artificial gene]
>gi|4505451|ref|NP_002515.1|pNRAS| neuroblastoma RAS
viral (v-ras) oncogene homolog
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF I+ + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL D K+ A + + F TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 156
>gi|131884|sp|P08556|RASN_MOUSE TRANSFORMING PROTEIN P21/N-RAS >gi|68926|pir||TVMSNS transforming
protein N-ras - mouse >gi|387498 (M12124) N-ras protein
[Mus musculus]
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF I+ + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL D K+ A + + F TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 156
>gi|131873|sp|P20171|RASH_RAT TRANSFORMING PROTEIN P21/H-RAS-1 (C-H-RAS) >gi|92023|pir||A25229
c-H-ras 1 protein - rat >gi|206559 (M13011) c-ras-H-1
protein [Rattus norvegicus]
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|464551|sp|Q04970|RASN_RAT TRANSFORMING PROTEIN P21/N-RAS >gi|285130|pir||S26621 GTP-binding
protein N-ras - rat >gi|56769|emb|CAA48460| (X68394) p21
protein [Rattus norvegicus]
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF I+ + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL D K+ A + + F TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 156
>gi|131870|sp|P01113|RASH_MSV TRANSFORMING PROTEIN P21 >gi|68930|pir||TVMVB transforming protein
H-ras - BALB murine sarcoma virus >gi|332200 (M10035)
p21 transforming protein [Murine sarcoma virus]
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIKTSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|131872|sp|P23175|RASH_MSVNS TRANSFORMING PROTEIN P21 >gi|68934|pir||TVMVNS transforming protein
ras - NS.C58 murine sarcoma virus >gi|332198 (M30733)
p21 protein [Murine sarcoma virus]
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|208115 (M30708) p21 protein [Artificial gene] >gi|223635|prf||0904302A
protein,c-Ha-ras-1 [Homo sapiens]
Length = 189
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|91844|pir||S02054 transforming protein (N-ras) - mouse >gi|53448|emb|CAA31958|
(X13664) N-ras protein (AA 1-193) [Mus musculus]
Length = 193
Score = 69.5 bits (167), Expect = 3e-11
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF I+ + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL D K+ A + + F TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 156
>gi|3914539|sp|P93267|RAB7_MESCR RAS-RELATED PROTEIN RAB7A >gi|1842069 (U87142) Nt-rab7a homolog
[Mesembryanthemum crystallinum]
Length = 207
Score = 69.5 bits (167), Expect = 3e-11
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA+ +++ KI+ILG+ + N ++ +KE+ LQ
Sbjct: 1 MASRRRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPI 566
IWDTAGQERF S+ +YR A+ L + + +SF+ +++W E + + ++ P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETKA-----TNMNLRFFPTSALQNKNIDKIF 701
L+GNK D +D + E KA + N+ +F TSA N+++ F
Sbjct: 121 VLLGNKID-VDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAF 169
>gi|131885|sp|P18262|RAS_ARTSA RAS-LIKE PROTEIN >gi|280565|pir||A43640 p21 ras-like protein -
brine shrimp (fragment) >gi|161176 (M27887) p21 ras-like
protein [Artemia sp.]
Length = 178
Score = 69.5 bits (167), Expect = 3e-11
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
+++VI+GE+ L I DTAGQE + ++ Y R G LVF++ + +SF+ I + E I
Sbjct: 31 QQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQIK 90
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ ++P+ L+GNK DL D+ + A + F TSA +D F +
Sbjct: 91 RVKDAEEVPMVLVGNKCDLPTRAVDMSQAREVARQYGIPFVETSAKTRMGVDDGFYTLVR 150
Query: 717 RMLKIGHKMEKKGLNVNRRKRN 782
+ K KM KKG N +RR R+
Sbjct: 151 EIKK--DKM-KKG-NSSRRGRS 168
>gi|1072199 (U40942) similar to GTP-binding RAS-related proteins
[Caenorhabditis elegans]
Length = 276
Score = 69.1 bits (166), Expect = 3e-11
Identities = 33/105 (31%), Positives = 62/105 (58%), Gaps = 2/105 (1%)
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDK-WYEGIVAEVGNDIP 563
++L++WDTAG ER+ +I +YY +A+G+ V+ M +++SF+ ++K W + I +
Sbjct: 113 IRLELWDTAGMERYRTIYNSYYHSAHGVMCVYDMTNEKSFENLEKYWLKEIKQHAPPNAV 172
Query: 564 IFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ L+GNK D+ + D R E A+ + + + SA N ++ F
Sbjct: 173 LMLVGNKADMDQERKVDFDRAEKLASRLGVSLYEVSAKTGINCEEAF 219
>gi|1619855 (U68258) rab11-like [Caenorhabditis elegans]
Length = 127
Score = 69.1 bits (166), Expect = 3e-11
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ I + G+++K QIWDTAGQER+ +IT YYR A G LV+ + +++ +++W +
Sbjct: 48 FATRSISVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLK 107
Query: 531 GIVAEVGNDIPIFLIGNKYD 590
+ +I I +GNK D
Sbjct: 108 ELRDHADQNIVIMPVGNKCD 127
>gi|131874|sp|P01114|RASH_RRASV TRANSFORMING PROTEINS P21 AND P29 >gi|68932|pir||TVMVRS
transforming protein p29 (ras) - Rasheed rat sarcoma
virus >gi|333964 (J02294) p29 transforming protein [Rat
sarcoma virus]
Length = 248
Score = 69.1 bits (166), Expect = 3e-11
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 101 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 160
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA ++ F +
Sbjct: 161 RVKDSDDVPMVLVGNKCDLAAHTVESRQAQDLARSYGIPYIETSAKTRPGVEDAFYTLVR 220
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 221 EIRQ--HKLRK 229
>gi|131859|sp|P08646|RAS1_DROME RAS-LIKE PROTEIN 1 >gi|68945|pir||TVFF85 transforming protein
homolog ras-85D - fruit fly (Drosophila melanogaster)
>gi|158205 (M16429) Dras1 protein [Drosophila
melanogaster]
Length = 189
Score = 69.1 bits (166), Expect = 3e-11
Identities = 41/140 (29%), Positives = 70/140 (49%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G LVF++ +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ ++P+ L+GNK DL + ++ A + + TSA +D F +
Sbjct: 102 RVKDAEEVPMVLVGNKCDLASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K ++G +N+ R
Sbjct: 162 EIRKDKDNKGRRGRKMNKPNR 182
>gi|280937|pir||A43816 transforming protein (ras) - rabbit
Length = 189
Score = 69.1 bits (166), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGVPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|131868|sp|P08642|RASH_CHICK TRANSFORMING PROTEIN P21/H-RAS-1 >gi|68931|pir||TVCHRS transforming
protein H-ras-1 - chicken >gi|63507|emb|CAA27258|
(X03578) c-Ha-Ras protein (aa 1-189) [Gallus gallus]
Length = 189
Score = 69.1 bits (166), Expect = 3e-11
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLPARTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|131877|sp|P01117|RASK_MSVKI TRANSFORMING PROTEIN 21 >gi|68937|pir||TVMV2K transforming protein
K-ras-1 - Kirsten murine sarcoma virus >gi|332193
(J02228) p21 kis peptide [Kirsten murine sarcoma virus]
Length = 189
Score = 69.1 bits (166), Expect = 3e-11
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DT GQE + ++ Y R G VF++ + +SF+ I + E +
Sbjct: 42 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQLK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFL---- 704
+ D+P+ L+GNK DL D K+ + A + + F TSA + ++ F
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVR 161
Query: 705 EMGERMLKIGHKMEK 749
E+ + LK K EK
Sbjct: 162 EIRQYRLKKISKEEK 176
>gi|156356 (M55535) ras protein [Caenorhabditis elegans]
Length = 187
Score = 69.1 bits (166), Expect = 3e-11
Identities = 39/123 (31%), Positives = 64/123 (51%), Gaps = 1/123 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++VI+GE+ L I DTAGQE + ++ Y R G LVF++ + +SF+ + + E I
Sbjct: 45 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIR 104
Query: 537 VAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL D + A + TSA +D+ F +
Sbjct: 105 RVKDSDDVPMVLVGNKCDLSSRSVDFRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVR 164
Query: 717 RMLK 728
+ K
Sbjct: 165 EIRK 168
>gi|126498|sp|P22981|LT60_CAEEL LET-60 RAS PROTEIN >gi|102524|pir||A36290 let-60 ras protein -
Caenorhabditis elegans >gi|3881788|emb|CAA92630|
(Z68302) predicted using Genefinder; similar to LET-60
RAS protein; cDNA EST yk211c10.5 comes from this gene;
cDNA EST yk331a3.5 comes from this gene [Caenorhabditis
elegans]
Length = 184
Score = 69.1 bits (166), Expect = 3e-11
Identities = 39/123 (31%), Positives = 64/123 (51%), Gaps = 1/123 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI- 536
K++VI+GE+ L I DTAGQE + ++ Y R G LVF++ + +SF+ + + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIR 101
Query: 537 VAEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL D + A + TSA +D+ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLSSRSVDFRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVR 161
Query: 717 RMLK 728
+ K
Sbjct: 162 EIRK 165
>gi|3914550|sp|O24461|RAB7_PRUAR RAS-RELATED PROTEIN RAB7 >gi|2317874 (U82219) Rab7 GTP binding
protein [Prunus armeniaca]
Length = 207
Score = 69.1 bits (166), Expect = 3e-11
Identities = 49/160 (30%), Positives = 80/160 (49%), Gaps = 10/160 (6%)
Query: 222 MAAIKQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQ 398
MA+ ++ K++ILG+ + N ++ +KE+ LQ
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
Query: 399 IWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV----GNDIPI 566
IWDTAGQERF S+ +YR A+ LV+ + +SF+ ++ W E + + + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120
Query: 567 FLIGNKYDLLDDMNDIKRFETK-----ATNMNLRFFPTSALQNKNIDKIF 701
++GNK D +D N E K A+ N+ +F TSA + N+D F
Sbjct: 121 VVLGNKID-VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAF 169
>gi|4291|emb|CAA25207| (X00528) URF c-ras (sc-2) [Saccharomyces cerevisiae]
Length = 322
Score = 69.1 bits (166), Expect = 3e-11
Identities = 44/130 (33%), Positives = 67/130 (50%), Gaps = 2/130 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+ E L I DTAGQE + ++ + Y RN G LV+S+ S D + +Y+ I
Sbjct: 49 KQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQIP 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D +PI ++GNK DL ++ + A MN F TSA Q N+++ F +
Sbjct: 109 RVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLA 168
Query: 714 ERMLKIGHKMEK 749
+ G K K
Sbjct: 169 RLVRDEGGKYNK 180
>gi|1710023|sp|P51159|RB27_HUMAN RAS-RELATED PROTEIN RAB-27A (RAB-27) (GTP-BINDING PROTEIN RAM)
>gi|2136080|pir||I39198 Ram/Rab27 - human
Length = 221
Score = 66.0 bits (158), Expect = 4e-11
Identities = 39/106 (36%), Positives = 59/106 (54%), Gaps = 3/106 (2%)
Query: 378 GESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGND 557
G+ + LQ+WDTAGQERF S+T ++R+A G L+ + +++SF + W + +
Sbjct: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLCDLTNEQSFLNVRNWISQLQMHAYCE 124
Query: 558 IP-IFLIGNKYDLLDDMNDIKRFE--TKATNMNLRFFPTSALQNKNIDK 695
P I L GNK D L+D +K E A + +F TSA NI +
Sbjct: 125 NPDIVLCGNKSD-LEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQ 172
Score = 23.1 bits (48), Expect = 4e-11
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKTS+L ++ F I TV
Sbjct: 20 VGKTSVLYQYTDGKFNSKFITTV 42
>gi|3880453|emb|CAA91357| (Z66516) similar to ras related protein; cDNA EST EMBL:D70288 comes
from this gene; cDNA EST EMBL:D66485 comes from this
gene; cDNA EST yk228a8.5 comes from this gene; cDNA EST
yk241g4.5 comes from this gene; cDNA EST yk301h3.5...
Length = 209
Score = 68.7 bits (165), Expect = 4e-11
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 234 KQERFKILILGEXM*ERLVFFN-VXXXXXXXXXXXXXXXNYSSKEIVINGESLKLQIWDT 410
K+ K++ILG+ + N ++ ++++ I+ ++ LQIWDT
Sbjct: 6 KKALLKVIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVNIDDRTVTLQIWDT 65
Query: 411 AGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIPIFLIG 578
AGQERF S+ +YR A+ L F + + SF +D W + + + + P L+G
Sbjct: 66 AGQERFQSLGVAFYRGADCCVLAFDVTNAASFKSLDSWRDEFLIQASPRDPDHFPFVLLG 125
Query: 579 NKYDLLDDMN-DIKRFETKA-TNMNLRFFPTSALQNKNIDKIFLEMGERML 725
NK DL KR ++ T N+ ++ SA + N++ FL + L
Sbjct: 126 NKVDLESQRAVSSKRAQSWCQTKGNIPYYEVSAKEALNVEAAFLAIARDAL 176
>gi|1710360 (U79145) membrane associated GTP binding protein RAB18
[Caenorhabditis briggsae]
Length = 202
Score = 65.6 bits (157), Expect = 5e-11
Identities = 37/121 (30%), Positives = 61/121 (49%), Gaps = 1/121 (0%)
Query: 366 IVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAE 545
+ I+G +KL IWDTAGQERF ++T +YYR A G+ V+ + SF+ + W +
Sbjct: 53 MTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTY 112
Query: 546 VGNDIPI-FLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
ND I ++ NK D+ + + A F SA + + F E+ E++
Sbjct: 113 CTNDNVIKMMVANKIDMPNRTVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKI 172
Query: 723 LK 728
++
Sbjct: 173 IQ 174
Score = 23.1 bits (48), Expect = 5e-11
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 275 VGKTSILQRFISDTF 319
VGK+S++ RF+ D F
Sbjct: 22 VGKSSLMLRFVDDVF 36
>gi|243893|bbs|79188 K-rev-1=transformation-suppressor [mice, Kirsten sarcoma
virus-transformed NIH 3T3 cells, Peptide, 190 aa]
Length = 190
Score = 68.3 bits (164), Expect = 6e-11
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRGGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|576243|pdb|1PLK| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Pro (G12p)
Complexed With Guanosine-Triphosphate
>gi|2392389|pdb|1JAH| H-Ras P21 Protein Mutant G12p,
Complexed With Guanosine-5'-[beta,Gamma-Methylene]
Triphosphate And Magnesium
Length = 166
Score = 68.3 bits (164), Expect = 6e-11
Identities = 36/114 (31%), Positives = 65/114 (56%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|332189 (J02207) p21 v-has transforming protein [Harvey murine sarcoma
virus]
Length = 189
Score = 68.3 bits (164), Expect = 6e-11
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DT GQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|225550|prf||1306284A gene Dmras85D [Drosophila melanogaster]
Length = 189
Score = 68.3 bits (164), Expect = 6e-11
Identities = 41/140 (29%), Positives = 70/140 (49%), Gaps = 1/140 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G LVF++ +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ ++P+ L+GNK DL + ++ A + + TSA +D F +
Sbjct: 102 RVKDAEEVPMVLVGNKCDLASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDPFYTLVR 161
Query: 717 RMLKIGHKMEKKGLNVNRRKR 779
+ K ++G +N+ R
Sbjct: 162 EIRKDKDNKGRRGRKMNKPNR 182
>gi|131871|sp|P01115|RASH_MSVHA TRANSFORMING PROTEINS P21 AND P29 >gi|68933|pir||TVMV3H
transforming protein H-ras - Harvey murine sarcoma virus
>gi|332185 (M24154) transforming protein p21 has [Harvey
murine sarcoma virus] >gi|332188 (J02207) protein p30
[Harvey murine sarcoma virus]
Length = 241
Score = 68.3 bits (164), Expect = 6e-11
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DT GQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 94 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 153
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 154 RVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 213
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 214 EIRQ--HKLRK 222
>gi|2118466|pir||I80324 PR371 c-K-ras oncogene - human (fragment) >gi|180594 (M35505) PR371
c-K-ras oncogene [Homo sapiens]
Length = 150
Score = 68.3 bits (164), Expect = 6e-11
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSA 671
+ D+P+ L+GNK DL D K+ + A + + F TSA
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIQTSA 146
>gi|2865392 (AF035011) GTP binding protein [Plasmodium falciparum]
Length = 116
Score = 58.6 bits (139), Expect = 6e-11
Identities = 25/70 (35%), Positives = 45/70 (63%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + ++ ++LQ+WDTAGQERF S+ +Y R++ +V+ + + +SF+ KW
Sbjct: 47 DFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWI 106
Query: 528 EGIVAEVGND 557
+ I+ E G D
Sbjct: 107 QDILNERGKD 116
Score = 29.7 bits (65), Expect = 6e-11
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 275 VGKTSILQRFISDTFTYSIINTVDKLFFQRNCY 373
VGKTSI+ RF+ DTF + +T+ F + Y
Sbjct: 22 VGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLY 54
>gi|1388197 (U59878) low-Mr GTP-binding protein Rab32 [Homo sapiens]
Length = 210
Score = 67.9 bits (163), Expect = 8e-11
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 219 PMAAIKQERFKILILGE------XM*ERLV--FFNVXXXXXXXXXXXXXXXNYSSKEIVI 374
P ++ FK+L++GE + +R V F+ N+ S+ +V
Sbjct: 2 PAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLV- 60
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV-- 548
+LQ+WD AGQERF ++T+ YY+ A G F+VF + +F+ + KW + ++V
Sbjct: 61 -----RLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHL 115
Query: 549 --GNDIPIFLIGNKYDLLDDMNDIKRFETKATNMN--LRFFPTSALQNKNIDKIFLEMGE 716
G+ IP L+ NK D D + + + +F TSA N NI++ + E
Sbjct: 116 PNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVE 175
Query: 717 RML 725
++L
Sbjct: 176 KIL 178
>gi|231162|pdb|5P21| c-H-Ras p21 Protein (Amino Acids 1 - 166) Complex With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (GppNp)
>gi|493746|pdb|121P| H-Ras P21 Protein Complex With
Guanosine-5'-[b,G-Methylene] Triphosphate
>gi|576070|pdb|1CRP| C-H-Ras P21 Protein (Catalytic
Domain, Residues 1 - 166) Complexed With Gdp And Mg
(Nmr, First 20 Structures) >gi|576071|pdb|1CRQ| C-H-Ras
P21 Protein (Catalytic Domain, Residues 1 - 166)
Complexed With Gdp And Mg (Nmr, Restrained Minimized
Average) >gi|576072|pdb|1CRR| C-H-Ras P21 Protein
(Catalytic Domain, Residues 1 - 166) Complexed With Gdp
And Mg (Nmr, Final 20 Structures) >gi|1127265|pdb|1GNR|
C-H-Ras P21 Protein Complexed With
P3-1[r]-(2-Nitrophenyl)- Ethyl-Guanosine-5'-Triphosphate
(R-Diastereomer) (Residues 1 - 166)
>gi|1127266|pdb|1GNQ| C-H-Ras P21 Protein Complexed
With P3-1[s]-(2-Nitrophenyl)-
Ethyl-Guanosine-5'-Triphosphate (S-Diastereomer)
(Residues 1 - 166) >gi|1127267|pdb|1GNP| C-H-Ras P21
Protein Complexed With 3'-O-(N-Methyl-
Anthraniloyl-2'-Deoxyguanosine-5'-[beta,Gamma-Imido]-
Triphosphate (Residues 1 - 166) >gi|3402129|pdb|1WQ1|R
Chain R, Ras-Rasgap Complex >gi|4389273|pdb|1BKD|R Chain
R, Complex Of Human H-Ras With Human Sos-1
Length = 166
Score = 67.9 bits (163), Expect = 8e-11
Identities = 36/114 (31%), Positives = 65/114 (56%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|515076|pdb|1AGP| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Asp (G12d)
Complexed With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 67.9 bits (163), Expect = 8e-11
Identities = 36/114 (31%), Positives = 65/114 (56%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|494936|pdb|821P| C-H-Ras P21 Protein (Residues 1 - 166) Mutant With Gly 12 Replaced
By Pro (G12p) Complex With Guanosine-5'-[b,G-Imido]
Triphosphate >gi|576242|pdb|1PLJ| C-H-Ras P21 Protein
Mutant With Gly 12 Replaced By Pro (G12p) Complexed With
P3-1-(2-Nitrophenyl)ethyl-
Guanosine-5'-(B,G-Imido)-Triphosphate
>gi|576244|pdb|1PLL| C-H-Ras P21 Protein Mutant With
Gly 12 Replaced By Pro (G12p) Complexed With
Guanosine-Diphosphate >gi|2392390|pdb|1JAI| H-Ras P21
Protein Mutant G12p, Complexed With
Guanosine-5'-[beta,Gamma-Methylene] Triphosphate And
Manganese
Length = 166
Score = 67.9 bits (163), Expect = 8e-11
Identities = 36/114 (31%), Positives = 65/114 (56%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|494886|pdb|421P| H-Ras P21 Protein Mutant With Gly 12 Replaced By Arg (G12r)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 67.9 bits (163), Expect = 8e-11
Identities = 36/114 (31%), Positives = 65/114 (56%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|494721|pdb|221P| H-Ras P21 Protein Mutant With Asp 38 Replaced By Glu (D38e)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 67.9 bits (163), Expect = 8e-11
Identities = 36/114 (31%), Positives = 65/114 (56%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|4150910|emb|CAA77070| (Y18167) ras protein [Suberites domuncula]
Length = 191
Score = 67.9 bits (163), Expect = 8e-11
Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K+ VI+ E L I DTAGQE F ++ + Y G LV+S+ID SF+ I K+++ I+
Sbjct: 48 KQCVIDDEVAVLDILDTAGQEEFSAMREQYMHTGEGFLLVYSIIDRNSFEEIPKFHKQIL 107
Query: 540 -AEVGNDIPIFLIGNKYDL-LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
+ D P+ L+ NK DL + + + E A + +++ TSA +++K F ++
Sbjct: 108 RVKDKGDFPMILVANKADLEAERVVTLSEGEELAQQLKIKYVETSAKHRVHVEKAFHDL- 166
Query: 714 ERMLKIGHKMEKKGLNVNRRK 776
R+++ K + ++K
Sbjct: 167 VRVIRRAQKPDNTDKKKKKKK 187
>gi|61559|emb|CAA25322| (X00740) transforming protein p21 [Murine sarcoma virus]
Length = 189
Score = 67.9 bits (163), Expect = 8e-11
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DT GQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|2833245|sp|Q13637|RB32_HUMAN RAS-RELATED PROTEIN RAB-32 >gi|1575792 (U71127) low Mr GTP-binding
protein Rab32 [Homo sapiens]
Length = 225
Score = 67.9 bits (163), Expect = 8e-11
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 219 PMAAIKQERFKILILGE------XM*ERLV--FFNVXXXXXXXXXXXXXXXNYSSKEIVI 374
P ++ FK+L++GE + +R V F+ N+ S+ +V
Sbjct: 17 PAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLV- 75
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEV-- 548
+LQ+WD AGQERF ++T+ YY+ A G F+VF + +F+ + KW + ++V
Sbjct: 76 -----RLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHL 130
Query: 549 --GNDIPIFLIGNKYDLLDDMNDIKRFETKATNMN--LRFFPTSALQNKNIDKIFLEMGE 716
G+ IP L+ NK D D + + + +F TSA N NI++ + E
Sbjct: 131 PNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVE 190
Query: 717 RML 725
++L
Sbjct: 191 KIL 193
>gi|3434937|dbj|BAA32410| (AB000281) krev-1 [Neurospora crassa]
Length = 225
Score = 67.9 bits (163), Expect = 8e-11
Identities = 39/122 (31%), Positives = 68/122 (54%), Gaps = 2/122 (1%)
Query: 363 EIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV- 539
++ ++G + L+I DTAG E+F ++ Y + G LVFS+ S D + E I+
Sbjct: 52 QVAVDGRQVILEILDTAGTEQFVAMRDLYMKAGQGFLLVFSITSQASLDELATLREEIIR 111
Query: 540 AEVGNDIPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +IPI ++GNK DLLD D + T + N ++ SA N+D++F+++
Sbjct: 112 IKDDENIPIVMVGNKADLLDQRAVDRAKAFTISQQWNAPYYEASARTRTNVDEVFIDLCR 171
Query: 717 RMLK 728
+ML+
Sbjct: 172 QMLR 175
>gi|133487|sp|P10833|RRAS_MOUSE RAS-RELATED PROTEIN R-RAS (P23) >gi|200677 (M21019) R-ras [Mus
musculus]
Length = 218
Score = 67.9 bits (163), Expect = 8e-11
Identities = 43/134 (32%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
+K ++G +L I DTAGQE F ++ + Y R NG LVF++ D +SF+ + K + I
Sbjct: 67 TKICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQI 126
Query: 537 V-AEVGNDIPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFLE 707
+ + +D PI L+GNK D L++ + R E + + ++ +F SA N+D+ F
Sbjct: 127 LRVKDRDDFPIVLVGNKAD-LENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDEAF-- 183
Query: 708 MGERMLKIGHKMEKKGL 758
E++++ K +++ L
Sbjct: 184 --EQLVRAVRKYQEQEL 198
>gi|1710021|sp|P35290|RB24_MOUSE RAS-RELATED PROTEIN RAB-24 (RAB-16) >gi|631754|pir||S40235 rab24
protein - mouse >gi|438164|emb|CAA80472| (Z22819) Rab24
protein [Mus musculus]
Length = 203
Score = 67.5 bits (162), Expect = 1e-10
Identities = 38/141 (26%), Positives = 80/141 (55%), Gaps = 11/141 (7%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
+ +K + + ++ L IWDTAG ER+ ++++ YYR A + + + D SF+ W +
Sbjct: 45 FVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVK 104
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD--------DMNDIKRFETKATNMNLRFFPTSALQNKN 686
+ + I+L G K DLL+ D +D++ + A N+ + F TS+ ++
Sbjct: 105 EL-RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDY---ADNIKAQLFETSSKTGQS 160
Query: 687 IDKIFLEMGERMLKIGH---KMEKKGLNVNRR 773
+D++F ++ E + + E KG++++++
Sbjct: 161 VDELFQKVAEDYVSVAAFQVMTEDKGVDLSQK 192
>gi|2500063|sp|Q61411|RASH_MOUSE TRANSFORMING PROTEIN P21/H-RAS-1 (C-H-RAS) >gi|1363101|pir||S57718
C-H-Ras protein - mouse >gi|895863|emb|CAA90306|
(Z50013) C-H-Ras [Mus musculus]
Length = 189
Score = 67.5 bits (162), Expect = 1e-10
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L DTAGQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|109930|pir||A41636 GTP-binding protein rah - mouse (fragment) >gi|240986|bbs|72305
(S72304) LMW G-protein=low-molecular-weight GTP-binding
protein [mice, HT4 neural cell line, Peptide, 208 aa]
[Mus sp.] >gi|228517|prf||1805246A low molecular weight
GTP-binding protein [Mus musculus]
Length = 208
Score = 62.8 bits (150), Expect = 1e-10
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ + + G LQ+WDTAGQERF I YYR A I +VF++ D S + +W
Sbjct: 37 DFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWL 96
Query: 528 EGIVAEVG-NDIPIFLIGNKYDL-------LDDMNDIKRFETKATNMNLRFFPTSALQNK 683
+ E +++ +FL+G+K DL L + + +K A + ++ S+L +
Sbjct: 97 TDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALK----VAQEIKAEYWAVSSLTGE 152
Query: 684 NIDKIFLEM 710
N+ + F +
Sbjct: 153 NVREFFFRV 161
Score = 24.3 bits (51), Expect = 1e-10
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 272 NVGKTSILQRFISDTF 319
+VGKT ++ RF DTF
Sbjct: 11 SVGKTCLINRFCKDTF 26
>gi|1195467 (U24678) ras-related protein RAB-5 [Trypanosoma brucei rhodesiense]
Length = 230
Score = 67.1 bits (161), Expect = 1e-10
Identities = 36/117 (30%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 384 SLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIP 563
++K +IWDTAGQER+ S+ YYR A G +V+ + S W + A +
Sbjct: 78 TIKFEIWDTAGQERYRSLAPIYYRGACGALVVYDITSAESLKKAQMWMRELRANADPTLL 137
Query: 564 IFLIGNKYDLLDDMNDIKRFETKATNMN---LRFFPTSALQNKNIDKIFLEMGERMLKIG 734
I L+GNK D ++ + + + A FF SA +N N++++F ++ +L+ G
Sbjct: 138 IILVGNKKD-MESLRQVSYEDGAAVAQEEDVNGFFEVSAKENVNVEEVFAKLARLLLEHG 196
>gi|68947|pir||TVHUC2 transforming protein ras (teratocarcinoma clone TC21) - human
>gi|190877 (M31468) ras-like protein [Homo sapiens]
Length = 203
Score = 67.1 bits (161), Expect = 1e-10
Identities = 43/118 (36%), Positives = 65/118 (54%), Gaps = 3/118 (2%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
+K+ VI+ + +L I DTAGQE F ++ + Y R G LVFS+ D SF+ I K+ I
Sbjct: 51 TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 110
Query: 537 VAEVGND-IPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFLE 707
+ D P+ LIGNK D LD + + E + A + + + SA N+D+ F E
Sbjct: 111 LRVKDRDEFPMILIGNKAD-LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE 169
Query: 708 M 710
+
Sbjct: 170 L 170
>gi|226746|prf||1604384A ras oncogene [Malignant histiocytosis sarcoma virus]
Length = 189
Score = 67.1 bits (161), Expect = 1e-10
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DT GQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETKLLDILDTTGQEEYSAMRDQYMRTGEGFLKVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
Query: 717 RMLKIGHKMEK 749
+ + HK+ K
Sbjct: 162 EIRQ--HKLRK 170
>gi|2507282|sp|P17082|RRA2_HUMAN RAS-RELATED PROTEIN R-RAS2 (RAS-LIKE PROTEIN TC21) (TERATOCARCINOMA
ONCOGENE)
Length = 204
Score = 67.1 bits (161), Expect = 1e-10
Identities = 43/118 (36%), Positives = 65/118 (54%), Gaps = 3/118 (2%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
+K+ VI+ + +L I DTAGQE F ++ + Y R G LVFS+ D SF+ I K+ I
Sbjct: 52 TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 111
Query: 537 VAEVGND-IPIFLIGNKYDLLDDMNDIKRFETK--ATNMNLRFFPTSALQNKNIDKIFLE 707
+ D P+ LIGNK D LD + + E + A + + + SA N+D+ F E
Sbjct: 112 LRVKDRDEFPMILIGNKAD-LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE 170
Query: 708 M 710
+
Sbjct: 171 L 171
>gi|417090|sp|P32835|GSP1_YEAST GTP-BINDING NUCLEAR PROTEIN GSP1/CNR1 >gi|486807|pir||S35504
GTP-binding protein GSP1 - yeast (Saccharomyces
cerevisiae) >gi|171621 (L08690) GTP-binding protein
[Saccharomyces cerevisiae] >gi|311752|emb|CAA50747|
(X71945) CNR2 [Saccharomyces cerevisiae] >gi|596049
(U17243) GTP-binding nuclear protein. Highly similar to
GSP2_YEAST. Belongs to the Ran family of Ras proteins
[Saccharomyces cerevisiae]
Length = 219
Score = 66.7 bits (160), Expect = 2e-10
Identities = 37/116 (31%), Positives = 59/116 (49%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
N +K +WDTAGQE+F + YY NA ++F + ++ + W+ +V V
Sbjct: 57 NFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCE 115
Query: 555 DIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
+IPI L GNK D+ + K T NL+++ SA N N +K FL + ++
Sbjct: 116 NIPIVLCGNKVDVKERKVKAKTI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>gi|131866|sp|P08645|RAS3_DROME RAS-LIKE PROTEIN 3 (ROUGHENED PROTEIN) >gi|103428|pir||A41217
transforming protein (rap1) - fruit fly (Drosophila
melanogaster) >gi|158198 (M80535) GTP-binding protein
[Drosophila melanogaster]
Length = 184
Score = 66.7 bits (160), Expect = 2e-10
Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++ ++G+ L+I DTAG E+F ++ Y +N G LV+S+ +F+ + E I+
Sbjct: 42 KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRF-ETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
+ +D+P+ L+GNK DL ++ K + AT N F TSA N++ IF ++
Sbjct: 102 RVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLV 161
Query: 714 ERMLKIGHKMEKK 752
++ K + ++K
Sbjct: 162 RQINKKSPEKKQK 174
>gi|629626|pir||S45023 Rab protein - alfalfa >gi|488700|emb|CAA55865| (X79278) Rab
[Medicago sativa]
Length = 217
Score = 66.7 bits (160), Expect = 2e-10
Identities = 43/135 (31%), Positives = 71/135 (51%), Gaps = 4/135 (2%)
Query: 351 YSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYE 530
++++ + ++ + +K QIWDTAGQER+ +IT YYR A G LV+ + +F+ + + E
Sbjct: 50 FATRTLNVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHGTFENVRQMAE 109
Query: 531 GIVAEVGNDIPIFLIGNKYDLLD----DMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
L+GNK DL D K + K +L F TSAL+ N++
Sbjct: 110 RTAKPHRFQHCCVLVGNKADLRHLVAVSTEDGKSYAEKE---SLYFMETSALEATNVENS 166
Query: 699 FLEMGERMLKIGHKMEKKG 755
F E+ ++ +I K +G
Sbjct: 167 FAEVLTQIYRILSKKAVEG 185
>gi|1370174|emb|CAA98164| (Z73936) RAB1Y [Lotus japonicus]
Length = 207
Score = 66.7 bits (160), Expect = 2e-10
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDK-W 524
++ K + I G+ LKL IWDTAGQERF ++T +YYR A GI +V+ + +F + + W
Sbjct: 46 DFKVKYVAIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIW 105
Query: 525 YEGI-VAEVGNDIPIFLIGNKYDLLDDMNDIKRFETK-ATNMNLRFFPTSALQNKNIDKI 698
+ I + D L+GNK D D K+ A F SA N+ +
Sbjct: 106 AKEIDLYSTNQDCIKMLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQC 165
Query: 699 FLEMGERML 725
F E+ ++L
Sbjct: 166 FEELVLKIL 174
>gi|417091|sp|P32836|GSP2_YEAST GTP-BINDING NUCLEAR PROTEIN GSP2/CNR2 >gi|486808|pir||S35505
GTP-binding protein GSP2 - yeast (Saccharomyces
cerevisiae) >gi|171623 (L08691) GTP-binding protein
[Saccharomyces cerevisiae] >gi|311754|emb|CAA50748|
(X71946) CNR1 [Saccharomyces cerevisiae]
>gi|1420445|emb|CAA99394| (Z75093) ORF YOR185c
[Saccharomyces cerevisiae]
Length = 220
Score = 66.7 bits (160), Expect = 2e-10
Identities = 37/116 (31%), Positives = 59/116 (49%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
N +K +WDTAGQE+F + YY NA ++F + ++ + W+ +V V
Sbjct: 58 NFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCE 116
Query: 555 DIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGERM 722
+IPI L GNK D+ + K T NL+++ SA N N +K FL + ++
Sbjct: 117 NIPIVLCGNKVDVKERKVKAKTI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 171
>gi|586381|sp|P38146|YB9J_YEAST HYPOTHETICAL RAS-RELATED 24.1 KD PROTEIN IN SHM1-MRPL37 INTERGENIC
REGION >gi|419873|pir||S32965 probable GTP-binding
protein YBR264c - yeast (Saccharomyces cerevisiae)
>gi|296563|emb|CAA49929| (X70529) ORF YBR1733
[Saccharomyces cerevisiae] >gi|536694|emb|CAA85227|
(Z36133) ORF YBR264c [Saccharomyces cerevisiae]
Length = 218
Score = 65.6 bits (157), Expect = 2e-10
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 387 LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPI 566
+ ++IWDTAGQER+ S+ YYR+AN +VF + D S C W++ + + +
Sbjct: 78 IHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDL-QDRAQGTQV 136
Query: 567 FLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNID---KIFLEM-GERMLKIG 734
++GNKYDL+ + + A L + SA N D KI + + E K
Sbjct: 137 IIVGNKYDLVCEEHS-GEVTIPAELQGLPYVAVSAKTGYNFDTLNKIIISLVPESQFKTL 195
Query: 735 HKMEKKG--LNVNRRK 776
K ++G L +N++K
Sbjct: 196 SKNNEQGNILEINKKK 211
Score = 20.8 bits (42), Expect = 2e-10
Identities = 11/31 (35%), Positives = 15/31 (47%)
Query: 272 NVGKTSILQRFISDTFTYSIINTVDKLFFQR 364
+VGKTSI+ R S F T+ F +
Sbjct: 33 SVGKTSIVTRLKSGKFLAKHAATIGAAFITK 63
>gi|494910|pdb|521P| H-Ras P21 Protein Mutant With Gly 12 Replaced By Val (G12v)
Complex With Guanosine Triphosphate
Length = 166
Score = 66.3 bits (159), Expect = 2e-10
Identities = 35/114 (30%), Positives = 64/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DT GQE + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|5094|emb|CAA26191| (X02331) SPRAS-protein [Schizosaccharomyces pombe]
Length = 219
Score = 66.3 bits (159), Expect = 2e-10
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K+ I+GE L + DTAGQE + ++ + Y R G LV+++ SFD I +Y+ I+
Sbjct: 47 KKCEIDGEGAVLDLLDTAGQEEYSAMREQYMRTGQGFLLVYNITSRSSFDEISTFYQQIL 106
Query: 540 AEVGND-IPIFLIGNKYDL-LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D P+ L+ NK DL + + + E A +M+ + TSA N+++ F +
Sbjct: 107 RVKDKDTFPVVLVANKCDLEAERVVSRREREQLAKSMHCLYVETSAKLRLNVEEAFYSL- 165
Query: 714 ERMLKIGHKMEKKGLN 761
R ++ +K E+KG +
Sbjct: 166 VRTIRRYNKSEEKGFH 181
>gi|68942|pir||TVBYSR transforming protein ras - fission yeast (Schizosaccharomyces
pombe) (strain JY282)
Length = 219
Score = 66.3 bits (159), Expect = 2e-10
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K+ I+GE L + DTAGQE + ++ + Y R G LV+++ SFD I +Y+ I+
Sbjct: 47 KKCEIDGEGAVLDLLDTAGQEEYSAMREQYMRTGQGFLLVYNITSRSSFDEISTFYQQIL 106
Query: 540 AEVGND-IPIFLIGNKYDL-LDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D P+ L+ NK DL + + + E A +M+ + TSA N+++ F +
Sbjct: 107 RVKDKDTFPVVLVANKCDLEAERVVSRREREQLAKSMHCLYVETSAKLRLNVEEAFYSL- 165
Query: 714 ERMLKIGHKMEKKGLN 761
R ++ +K E+KG +
Sbjct: 166 VRTIRRYNKSEEKGFH 181
>gi|1546069 (U68070) GTPase homolog [Strongylocentrotus purpuratus]
Length = 63
Score = 66.3 bits (159), Expect = 2e-10
Identities = 30/63 (47%), Positives = 38/63 (59%)
Query: 402 WDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGN 581
WDTAGQERF +IT YYR A GI LV+ + + +SFD I W I D+ ++GN
Sbjct: 1 WDTAGQERFRTITTAYYRGAMGIMLVYDITNQKSFDNIRNWIRNIEEHASADVEKMILGN 60
Query: 582 KYD 590
K D
Sbjct: 61 KCD 63
>gi|418594|sp|P32939|YPT7_YEAST GTP-BINDING PROTEIN YPT7 >gi|322968|pir||A44334 GTP-binding protein
YPT7 - yeast (Saccharomyces cerevisiae)
>gi|5519|emb|CAA48244| (X68144) GTP-binding protein
(Ypt7p) [Saccharomyces cerevisiae]
>gi|728647|emb|CAA88515| (Z48613) Ypt7p [Saccharomyces
cerevisiae] >gi|1171484|dbj|BAA10973| (D64114) small GTP
binding protein [Saccharomyces cerevisiae]
Length = 208
Score = 66.3 bits (159), Expect = 2e-10
Identities = 45/169 (26%), Positives = 85/169 (49%), Gaps = 9/169 (5%)
Query: 222 MAAIKQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVINGESLK-L 395
M++ K+ K++ILG+ + + + ++ +KE+ ++G+ + +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 396 QIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVG----NDIP 563
Q+WDTAGQERF S+ +YR A+ LV+ + + SF+ I W + + P
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 564 IFLIGNKYDLLDDMNDI--KRFETKATNM-NLRFFPTSALQNKNIDKIFLEMGERMLK 728
++GNK D + + K + A ++ ++ F TSA N+D F E+ L+
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
>gi|439556 (U03623) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 97
Score = 66.3 bits (159), Expect = 2e-10
Identities = 27/59 (45%), Positives = 41/59 (68%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKW 524
++ +K + I ++KLQIWDTAGQ+RF +IT +YYR A GI +V+ + D SF+ + W
Sbjct: 24 DFKTKTVAIGEHNVKLQIWDTAGQDRFRTITCSYYRGAQGIIIVYDITDRESFENVKTW 82
>gi|131863|sp|P04388|RAS2_DROME RAS-LIKE PROTEIN 2 >gi|1085160|pir||S55022 small GTP binding
protein - fruit fly (Drosophila melanogaster) >gi|639710
(U15967) small GTP binding protein [Drosophila
melanogaster]
Length = 192
Score = 66.3 bits (159), Expect = 2e-10
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
+K+ I+ KL I DTAGQE F ++ + Y R+ G LVF++ D SFD I K+ I
Sbjct: 43 TKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQI 102
Query: 537 VAEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+ D P+ ++GNK DL ++ + + N+ + + SA N+D+ F E+
Sbjct: 103 LRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAKLRVNVDQAFHEL 162
>gi|131845|sp|P17080|RAN_HUMAN GTP-BINDING NUCLEAR PROTEIN RAN (TC4)
Length = 216
Score = 66.3 bits (159), Expect = 2e-10
Identities = 38/117 (32%), Positives = 60/117 (50%), Gaps = 2/117 (1%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
N +K +WDTAGQE+F + YY A ++F + ++ + W+ +V V
Sbjct: 55 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCE 113
Query: 555 DIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+IPI L GNK D+ D K F K NL+++ SA N N +K FL + +++
Sbjct: 114 NIPIVLCGNKVDIKDSKVKAKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>gi|2118467|pir||I59431 PR310 c-K-ras oncogene - human (fragment) >gi|180592 (M35504) PR310
c-K-ras oncogene [Homo sapiens]
Length = 150
Score = 66.3 bits (159), Expect = 2e-10
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAG E + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSA 671
+ D+P+ L+GNK DL D K+ + A + + F TSA
Sbjct: 102 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIQTSA 146
>gi|2500199|sp|Q35638|RAC1_PEA RAC-LIKE GTP BINDING PROTEIN RHO1 >gi|477010|pir||A47525
ras-related small GTP-binding protein Rho1Ps - garden
pea >gi|1263170 (L19093) GTP-binding protein [Pisum
sativum]
Length = 197
Score = 64.0 bits (153), Expect = 3e-10
Identities = 30/82 (36%), Positives = 47/82 (56%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
S +V+NG ++ L +WDTAGQE ++ + YR A+ L FS+I S++ + K +
Sbjct: 44 SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE 103
Query: 537 VAEVGNDIPIFLIGNKYDLLDD 602
+ +PI L+G K DL DD
Sbjct: 104 LKHYAPGVPIILVGTKLDLRDD 125
Score = 21.9 bits (45), Expect = 3e-10
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKT +L + S+TF + TV
Sbjct: 17 VGKTCLLISYTSNTFPTDYVPTV 39
>gi|2500061|sp|P79735|RAN_BRARE GTP-BINDING NUCLEAR PROTEIN RAN >gi|1747495 (U61395) Ran [Danio
rerio]
Length = 215
Score = 66.0 bits (158), Expect = 3e-10
Identities = 38/117 (32%), Positives = 61/117 (51%), Gaps = 2/117 (1%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
N ++K +WDTAGQE+F + YY A ++F + ++ + W+ +V V
Sbjct: 54 NRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCE 112
Query: 555 DIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+IPI L GNK D+ D K F K NL+++ SA N N +K FL + +++
Sbjct: 113 NIPIVLCGNKVDIKDRKVKAKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI 168
>gi|3850118|emb|CAA10039| (AJ012477) Ran protein [Salmo salar] >gi|3850120|emb|CAA10040|
(AJ012478) Ran protein [Salmo salar]
Length = 215
Score = 66.0 bits (158), Expect = 3e-10
Identities = 38/117 (32%), Positives = 61/117 (51%), Gaps = 2/117 (1%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
N ++K +WDTAGQE+F + YY A ++F + ++ + W+ +V V
Sbjct: 54 NRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCE 112
Query: 555 DIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+IPI L GNK D+ D K F K NL+++ SA N N +K FL + +++
Sbjct: 113 NIPIVLCGNKVDIKDRKVKAKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI 168
>gi|494922|pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Replaced By His (Q61h)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 66.0 bits (158), Expect = 3e-10
Identities = 35/114 (30%), Positives = 64/114 (55%), Gaps = 1/114 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAG E + ++ Y R G VF++ + +SF+ I ++ E I
Sbjct: 42 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+ +D+P+ L+GNK DL + ++ + A + + + TSA + ++ F
Sbjct: 102 RVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>gi|172361 (K01970) RAS1 protein [Saccharomyces cerevisiae]
Length = 309
Score = 66.0 bits (158), Expect = 3e-10
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+ + L I DTAGQE + ++ + Y R G LV+S+ SFD + +Y+ I
Sbjct: 49 KQVVIDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQ 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+D IP+ ++GNK DL ++ + A +N F TSA Q N+D+ F +
Sbjct: 109 RVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSL 167
>gi|1710013|sp|P01119|RAS1_YEAST RAS-LIKE PROTEIN 1 >gi|2144593|pir||TVBYR1 GTP-binding protein RAS1
- yeast (Saccharomyces cerevisiae)
>gi|4289|emb|CAA25206| (X00527) URF c-ras (sc-1)
[Saccharomyces cerevisiae] >gi|1164948|emb|CAA64023|
(X94335) YOR3205w [Saccharomyces cerevisiae]
>gi|1420281|emb|CAA99298| (Z75009) ORF YOR101w
[Saccharomyces cerevisiae]
Length = 309
Score = 66.0 bits (158), Expect = 3e-10
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+ + L I DTAGQE + ++ + Y R G LV+S+ SFD + +Y+ I
Sbjct: 49 KQVVIDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQ 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEM 710
+D IP+ ++GNK DL ++ + A +N F TSA Q N+D+ F +
Sbjct: 109 RVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSL 167
>gi|1370180|emb|CAA98167| (Z73939) RAB5B [Lotus japonicus]
Length = 200
Score = 66.0 bits (158), Expect = 3e-10
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 234 KQERFKILILGEX-M*ERLVFFNVXXXXXXXXXXXXXXXNYSSKEIVI-NGESLKLQIWD 407
K R K+++LG+ + + + ++ S+ I + + ++K +IWD
Sbjct: 29 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 88
Query: 408 TAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGNDIPIFLIGNKY 587
TAGQER+ ++ YYR A +V+ + SF W + + DI + L+GNK
Sbjct: 89 TAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGNPDIVMALVGNKA 148
Query: 588 DLLDDMNDIKRFETKATNMNLRFF-PTSALQNKNIDKIFLEMGERM 722
DLL+ + N FF TSA NI+++F E+ +R+
Sbjct: 149 DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRL 194
>gi|3334308|sp|P79737|RASN_BRARE TRANSFORMING PROTEIN P21/N-RAS (ZRAS-B1) >gi|1778053 (U62619) p21
N-ras oncogene [Danio rerio]
Length = 188
Score = 66.0 bits (158), Expect = 3e-10
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF + + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIK 101
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+ +D+P+ L+GN DL + D K+ + A + + F TSA + ++ F +
Sbjct: 102 RVKDSDDVPMVLVGNICDLARTV-DTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVR 160
Query: 717 -----RMLKIGHKMEKK 752
RM K+ + ++K
Sbjct: 161 EIRHYRMKKLNSREDRK 177
>gi|131867|sp|P22280|RAS3_RHIRA RAS-LIKE PROTEIN 3 >gi|168374 (M55177) MRAS3 [Rhizomucor racemosus]
Length = 205
Score = 66.0 bits (158), Expect = 3e-10
Identities = 41/129 (31%), Positives = 66/129 (50%), Gaps = 2/129 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K+ VI+ E+ L + DTAGQE + ++ + Y RN G LV+S+ SF+ ++ +Y+ I
Sbjct: 48 KQCVIDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIR 107
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D P+ L+GNK DL D + A + F TSA Q +D F E+
Sbjct: 108 RVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVV 167
Query: 714 ERMLKIGHKME 746
+ ++ + E
Sbjct: 168 REIRRMNKEQE 178
>gi|439558 (U03624) guanine nucleotide regulatory protein [Paramecium
tetraurelia]
Length = 97
Score = 66.0 bits (158), Expect = 3e-10
Identities = 27/51 (52%), Positives = 39/51 (75%)
Query: 372 INGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKW 524
+ G+S+K+QIWDTAGQERF +IT +YY+ A+GI L + + D +SF I+ W
Sbjct: 32 MQGKSVKMQIWDTAGQERFKTITASYYKGAHGIILTYDITDKQSFKDIENW 82
>gi|100997|pir||C36365 transforming protein homolog MRAS3 - Rhizomucor racemosus
Length = 206
Score = 66.0 bits (158), Expect = 3e-10
Identities = 41/129 (31%), Positives = 66/129 (50%), Gaps = 2/129 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K+ VI+ E+ L + DTAGQE + ++ + Y RN G LV+S+ SF+ ++ +Y+ I
Sbjct: 49 KQCVIDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIR 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D P+ L+GNK DL D + A + F TSA Q +D F E+
Sbjct: 109 RVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVV 168
Query: 714 ERMLKIGHKME 746
+ ++ + E
Sbjct: 169 REIRRMNKEQE 179
>gi|2313043|dbj|BAA21710| (D84317) rab-related protein 4 [Drosophila melanogaster]
Length = 197
Score = 63.6 bits (152), Expect = 4e-10
Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 348 NYSSKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWY 527
++ SK + ++G K+ +WDTAG ERF S+T ++YR A G LV+ + S ++ W
Sbjct: 41 DFKSKVMQVDGIDYKVALWDTAGAERFRSLTASFYRKALGAILVYDITSRDSLVKLETWL 100
Query: 528 EGIVAEVGN-DIPIFLIGNKYD--LLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKI 698
+ + N +I I ++GNK D + D + ++F K + F TSA ++ + +
Sbjct: 101 AELDSYSDNPNIAIIVVGNKIDEERVVDREEGRKFARKHRAL---FIETSAKCDQFVSDV 157
Query: 699 FLEMGERML 725
F ++ E+++
Sbjct: 158 FKDVVEKIV 166
Score = 21.9 bits (45), Expect = 4e-10
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 275 VGKTSILQRFISDTF 319
VGK+S+++RF+ + F
Sbjct: 16 VGKSSLIRRFVENKF 30
>gi|2558666 (U49971) GTP binding protein Rop1At [Arabidopsis thaliana]
>gi|3603426 (AF085480) rac-like GTP binding protein
Arac11 [Arabidopsis thaliana]
Length = 197
Score = 63.6 bits (152), Expect = 4e-10
Identities = 30/82 (36%), Positives = 47/82 (56%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
S +V+NG ++ L +WDTAGQE ++ + YR A+ L FS+I S++ + K +
Sbjct: 44 SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE 103
Query: 537 VAEVGNDIPIFLIGNKYDLLDD 602
+ +PI L+G K DL DD
Sbjct: 104 LKHYAPGVPIVLVGTKLDLRDD 125
Score = 21.9 bits (45), Expect = 4e-10
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKT +L + S+TF + TV
Sbjct: 17 VGKTCLLISYTSNTFPTDYVPTV 39
>gi|4097581 (U64923) NTGP2 [Nicotiana tabacum]
Length = 197
Score = 63.6 bits (152), Expect = 4e-10
Identities = 30/82 (36%), Positives = 47/82 (56%)
Query: 357 SKEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGI 536
S +V+NG ++ L +WDTAGQE ++ + YR A+ L FS+I S++ + K +
Sbjct: 44 SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE 103
Query: 537 VAEVGNDIPIFLIGNKYDLLDD 602
+ +PI L+G K DL DD
Sbjct: 104 LKHYAPGVPIVLVGTKLDLRDD 125
Score = 21.9 bits (45), Expect = 4e-10
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 275 VGKTSILQRFISDTFTYSIINTV 343
VGKT +L + S+TF + TV
Sbjct: 17 VGKTCLLISYTSNTFPTDYVPTV 39
>gi|1109582 (L49402) RAS gene product [Microgadus tomcod]
Length = 140
Score = 65.6 bits (157), Expect = 4e-10
Identities = 37/103 (35%), Positives = 58/103 (55%), Gaps = 1/103 (0%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ I + E I
Sbjct: 37 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 96
Query: 540 -AEVGNDIPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTS 668
+ D+P+ L+GNK DL D K+ + A + + F TS
Sbjct: 97 RVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYVIPFIETS 140
>gi|223831|prf||1001202A protein c-ras sc1 [Saccharomyces cerevisiae]
Length = 166
Score = 65.6 bits (157), Expect = 4e-10
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+ + L I DTAGQE + ++ + Y R G LV+S+ SFD + +Y+ I
Sbjct: 49 KQVVIDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQ 108
Query: 540 AEVGND-IPIFLIGNKYDLLDDMN-DIKRFETKATNMNLRFFPTSALQNKNIDKIF 701
+D IP+ ++GNK DL ++ + A +N F TSA Q N+D+ F
Sbjct: 109 RVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAF 164
>gi|3367672|emb|CAA19844| (AL031027) 1-evidence=predicted by match;
1-match_accession=SWISS-PROT:P25228;
1-match_description=RAS-RELATED PROTEIN RAB-3.;
1-match_species=DROSOPHILA MELANOGASTER (FRUIT FLY).;
1-method=blastx;1.4.9; 1-method_score=137.00; ...
Length = 423
Score = 65.6 bits (157), Expect = 4e-10
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 348 NYSSKEIVINGES----LKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCI 515
++ K ++ N + LQIWDTAGQERF S+T +YR+A G L+F + ++SF
Sbjct: 240 DFREKRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSEKSFLET 299
Query: 516 DKWYEGIVAEVGNDIP-IFLIGNKYDLLDDMNDIKRFETKA--TNMNLRFFPTSALQNKN 686
W + ++ P + L GNK DLL + + R + A L + TSA N
Sbjct: 300 ANWLSQLRTHAYSEDPDVVLCGNKCDLL-QLRVVSRDQVAALCRRYRLPYIETSACTGAN 358
Query: 687 I-DKIFLEMGERMLKI 731
+ + + L +G M +I
Sbjct: 359 VKEAVELLVGRVMERI 374
>gi|3097258|emb|CAA76679| (Y17188) p21-ras protein [Platichthys flesus]
Length = 188
Score = 65.6 bits (157), Expect = 4e-10
Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K++VI+GE+ L I DTAGQE + ++ Y R G VF++ + +SF+ + + E I
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDVHLYREQIN 101
Query: 540 AEVGND-IPIFLIGNKYDLLDDMNDIKRFETKATNMNLRFFPTSALQNKNIDKIFLEMGE 716
+D +P+ L+GNK DL + ++ + A + + F TSA + +++ F +
Sbjct: 102 RVKDSDSVPMVLVGNKSDLGTRNVESRQAQELARSYGVPFVETSAKTRQGVEEAFYSLVR 161
Query: 717 --RMLKIGHKMEKKGLNVNRRKR 779
R K ++ KK +++R
Sbjct: 162 EIRKYKETNRSNKKSKKNTQKRR 184
>gi|133486|sp|P10301|RRAS_HUMAN RAS-RELATED PROTEIN R-RAS (P23) >gi|68946|pir||TVHURR transforming
protein R-ras - human >gi|190936 (M14949) R-ras [Homo
sapiens]
Length = 218
Score = 65.6 bits (157), Expect = 4e-10
Identities = 41/129 (31%), Positives = 74/129 (56%), Gaps = 3/129 (2%)
Query: 372 INGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV-AEV 548
++G +L I DTAGQE F ++ + Y R +G LVF++ D +SF+ + K + I+ +
Sbjct: 72 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 131
Query: 549 GNDIPIFLIGNKYDLLDDMNDIKRFETKA--TNMNLRFFPTSALQNKNIDKIFLEMGERM 722
+D P+ L+GNK D L+ + R E A + ++ +F SA N+D+ F E++
Sbjct: 132 RDDFPVVLVGNKAD-LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF----EQL 186
Query: 723 LKIGHKMEKKGL 758
++ K +++ L
Sbjct: 187 VRAVRKYQEQEL 198
>gi|3929359|sp|O42785|RASL_COLTR RAS-LIKE PROTEIN >gi|2906025 (AF044895) Ras homolog [Colletotrichum
trifolii]
Length = 214
Score = 65.6 bits (157), Expect = 4e-10
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 360 KEIVINGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIV 539
K+ VI+ E L + DTAGQE + ++ + Y R G LV+S+ +SF+ I + + I+
Sbjct: 47 KQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQIL 106
Query: 540 AEVGND-IPIFLIGNKYDLLDDMNDIKR-FETKATNMNLRFFPTSALQNKNIDKIFLEMG 713
D P+ ++GNK DL + ++ E A + +F TSA N+DK F ++
Sbjct: 107 RVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIV 166
Query: 714 ERMLKIGHKME 746
+ + +M+
Sbjct: 167 REIRRYNREMQ 177
>gi|346437|pir||JC1455 GTP-binding protein Ran/TC4 - dog
Length = 216
Score = 65.6 bits (157), Expect = 4e-10
Identities = 38/117 (32%), Positives = 60/117 (50%), Gaps = 2/117 (1%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
N +K +WDTAGQE+F + YY A ++F + ++ + W+ +V V
Sbjct: 55 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCE 113
Query: 555 DIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+IPI L GNK D+ D K F K NL+++ SA N N +K FL + +++
Sbjct: 114 NIPIVLCGNKVDIKDRKVKAKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI 169
>gi|4092054 (AF054183) GTP binding protein [Homo sapiens]
Length = 216
Score = 65.6 bits (157), Expect = 4e-10
Identities = 38/117 (32%), Positives = 60/117 (50%), Gaps = 2/117 (1%)
Query: 375 NGESLKLQIWDTAGQERFHSITKNYYRNANGIFLVFSMIDDRSFDCIDKWYEGIVAEVGN 554
N +K +WDTAGQE+F + YY A ++F + ++ + W+ +V V
Sbjct: 55 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCE 113
Query: 555 DIPIFLIGNKYDLLDDMNDIKR--FETKATNMNLRFFPTSALQNKNIDKIFLEMGERML 725
+IPI L GNK D+ D K F K NL+++ SA N N +K FL + +++
Sbjct: 114 NIPIVLCGNKVDIKDRKVKAKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI 169
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125496551
Number of Sequences: 368476
Number of extensions: 2427837
Number of successful extensions: 8276
Number of sequences better than 10.0: 1458
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 6881
Number of HSP's gapped (non-prelim): 1077
length of query: 261
length of database: 112640273
effective HSP length: 54
effective length of query: 206
effective length of database: 92742569
effective search space: 19104969214
effective search space used: 19104969214
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)