BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII56R
         (693 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching....................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1353073|sp|P34316|YKT5_CAEEL HYPOTHETICAL 41.7 KD PROTEIN C07...    34  1.1


>gi|1353073|sp|P34316|YKT5_CAEEL HYPOTHETICAL 41.7 KD PROTEIN C07A9.5 IN CHROMOSOME III
           >gi|482082|pir||S40709 actin-binding protein homolog
           C07A9.5 - Caenorhabditis elegans
           >gi|3873985|emb|CAA82343| (Z29094) Similarity to
           spectrin C terminal domain and actinin; cDNA EST
           EMBL:D27532 comes from this gene; cDNA EST EMBL:C10914
           comes from this gene; cDNA EST EMBL:C12837 comes from
           this gene; cDNA EST EMBL:D34791 comes from thi...
           Length = 358
           
 Score = 34.0 bits (76), Expect = 1.1
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 10  DKRYIIEQFFSKFTFQSIVKEINKYLKDRKSGLNLFNQL-----REYLTNKFREEFKISN 174
           + RYI +  FS  T   ++ E+ + L+   S L    Q         +T K   EFK++ 
Sbjct: 179 ESRYIFDNTFSSATPHGVLVEMCQCLELMSSMLRSVEQSIADRNHNGVTEKQLHEFKLA- 237

Query: 175 VFEYFDDENYFQINDEGAHIFLKPMGY 255
            F+YFD E    ++ E   + LK  GY
Sbjct: 238 -FDYFDQEKNGWLDYEHFELCLKSQGY 263


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78186728
Number of Sequences: 368476
Number of extensions: 1122453
Number of successful extensions: 2885
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2885
Number of HSP's gapped (non-prelim): 1
length of query: 231
length of database: 112640273
effective HSP length: 53
effective length of query: 177
effective length of database: 93111045
effective search space: 16480654965
effective search space used: 16480654965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)