BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII49R
(732 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506689|oth|NP_001010|PRPS15A ribosomal protein S15a >gi|1082... 60 2e-08
gi|1173219|sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24)... 60 2e-08
gi|1173220|sp|P39027|RS1A_HUMAN 40S RIBOSOMAL PROTEIN S15A >gi|6... 60 2e-08
gi|107615|pir||S22051 ribosomal protein S15a.e - human >gi|36142... 60 2e-08
gi|3355488 (AC004218) putative ribosomal protein S15a [Arabidops... 59 3e-08
gi|133793|sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB8... 59 3e-08
gi|2130985|emb|CAA42600| (X59984) r-protein BnS15a [Brassica napus] 59 3e-08
gi|1173218|sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A >gi|4... 59 3e-08
gi|1710747|sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24)... 59 4e-08
gi|2119072|pir||JC4713 ribosomal protein S24 - sea urchin (Parac... 59 4e-08
gi|2429452 (AF025460) strong similarity to the S8P family of rib... 59 4e-08
gi|1350954|sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A >gi|4... 58 6e-08
gi|417715|sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24) ... 57 1e-07
gi|464711|sp|P33953|RS1A_KLUMA 40S RIBOSOMAL PROTEIN S15A (YS24)... 57 1e-07
gi|1071974|pir||S51385 ribosomal protein S15a.e.c12 - yeast (Sac... 57 1e-07
gi|133884|sp|P04648|RS22_YEAST 40S RIBOSOMAL PROTEIN S22 (YS24) ... 57 1e-07
gi|3758866|emb|CAB11151| (Z98551) predicted using hexExon; MAL3P... 56 3e-07
gi|1173217|sp|P46792|RS1A_AGABI 40S RIBOSOMAL PROTEIN S15A >gi|8... 54 1e-06
gi|3687245 (AC005169) putative ribosomal protein [Arabidopsis th... 52 6e-06
gi|2281972|emb|CAB10850| (Z98056) 40s ribosomal protein s15 or s... 51 8e-06
gi|134016|sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8 (HMAS8) (... 44 0.001
gi|134020|sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8 >gi|70917... 44 0.001
gi|1710778|sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P >gi|211... 43 0.002
gi|3122823|sp|O26126|RS8_METTH 30S RIBOSOMAL PROTEIN S8P >gi|262... 42 0.005
gi|3258195|dbj|BAA30878| (AP000007) 130aa long hypothetical 30S ... 41 0.009
gi|3914919|sp|O28369|RS8_ARCFU 30S RIBOSOMAL PROTEIN S8P >gi|264... 41 0.012
gi|2811038|sp|O05636|RS8_SULAC 30S RIBOSOMAL PROTEIN S8 >gi|2052... 40 0.020
gi|4493951|emb|CAB38987| (AL034556) predicted using hexExon; MAL... 33 1.9
gi|2500419|sp|P56015|RS8_HELPY 30S RIBOSOMAL PROTEIN S8 >gi|2314... 33 1.9
gi|4512418|dbj|BAA75285| (AB017508) rpsH homologue (identity of ... 32 5.7
gi|3122829|sp|O32997|RS8_MYCLE 30S RIBOSOMAL PROTEIN S8 >gi|2344... 31 9.8
>gi|4506689|oth|NP_001010|PRPS15A ribosomal protein S15a >gi|1082767|pir||S52339 ribosomal protein
S15a - human >gi|666047|emb|CAA59127| (X84407) ribosomal
protein S15a [Homo sapiens]
Length = 130
Score = 60.1 bits (143), Expect = 2e-08
Identities = 24/46 (52%), Positives = 38/46 (82%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E+++ NLLPSR FG +++T+S G++DH E + +TGGKILG+F+
Sbjct: 85 DLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
>gi|1173219|sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|881426 (U27539) 40S ribosomal
protein S24 [Dictyostelium discoideum]
Length = 130
Score = 60.1 bits (143), Expect = 2e-08
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++E++ + LLPSR FGH+++T+S G++DH E +TGGK+LG+FY
Sbjct: 85 EIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130
>gi|1173220|sp|P39027|RS1A_HUMAN 40S RIBOSOMAL PROTEIN S15A >gi|627959|pir||JC2234 ribosomal protein
S15a - rat >gi|495273|emb|CAA54918| (X77953) ribosomal
protein S15a [Rattus norvegicus]
Length = 130
Score = 60.1 bits (143), Expect = 2e-08
Identities = 24/46 (52%), Positives = 38/46 (82%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E+++ NLLPSR FG +++T+S G++DH E + +TGGKILG+F+
Sbjct: 85 DLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
>gi|107615|pir||S22051 ribosomal protein S15a.e - human >gi|36142|emb|CAA44568| (X62691)
ribosomal protein homologous to yeast S24 [Homo
sapiens]
Length = 129
Score = 60.1 bits (143), Expect = 2e-08
Identities = 24/46 (52%), Positives = 38/46 (82%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E+++ NLLPSR FG +++T+S G++DH E + +TGGKILG+F+
Sbjct: 84 DLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 129
>gi|3355488 (AC004218) putative ribosomal protein S15a [Arabidopsis thaliana]
Length = 136
Score = 59.3 bits (141), Expect = 3e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++E + A LLPSR FG++++T+S G++DH E + N GGK+LG+FY
Sbjct: 91 EIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
>gi|133793|sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB8) >gi|99825|pir||S20945 ribosomal
protein S15a - rape >gi|17863|emb|CAA42599| (X59983)
r-protein BnS15a [Brassica napus]
Length = 130
Score = 59.3 bits (141), Expect = 3e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++E + A LLPSR FG++++T+S G++DH E + N GGK+LG+FY
Sbjct: 85 EIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>gi|2130985|emb|CAA42600| (X59984) r-protein BnS15a [Brassica napus]
Length = 130
Score = 59.3 bits (141), Expect = 3e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++E + A LLPSR FG++++T+S G++DH E + N GGK+LG+FY
Sbjct: 85 EIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>gi|1173218|sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A >gi|440824 (L27461) ribosomal protein
S15 [Arabidopsis thaliana] >gi|2150130 (AF001412)
cytoplasmic ribosomal protein S15a [Arabidopsis
thaliana]
Length = 130
Score = 59.3 bits (141), Expect = 3e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++E + A LLPSR FG++++T+S G++DH E + N GGK+LG+FY
Sbjct: 85 EIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>gi|1710747|sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|1166457|emb|CAA64564| (X95268)
ribosomal protein S24 [Paracentrotus lividus]
Length = 130
Score = 58.9 bits (140), Expect = 4e-08
Identities = 23/46 (50%), Positives = 38/46 (82%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E++ +NLLPSR FG++++T+S G++DH E + + GGKILG+F+
Sbjct: 85 DMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
>gi|2119072|pir||JC4713 ribosomal protein S24 - sea urchin (Paracentrotus lividus)
Length = 130
Score = 58.9 bits (140), Expect = 4e-08
Identities = 23/46 (50%), Positives = 38/46 (82%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E++ +NLLPSR FG++++T+S G++DH E + + GGKILG+F+
Sbjct: 85 DMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
>gi|2429452 (AF025460) strong similarity to the S8P family of ribosomal
proteins [Caenorhabditis elegans]
Length = 130
Score = 58.9 bits (140), Expect = 4e-08
Identities = 25/46 (54%), Positives = 36/46 (77%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E+Y LLPSR FG+LI+T+S G++DH E + + GGKILG+F+
Sbjct: 85 DLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
>gi|1350954|sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A >gi|422493|pir||S33498 ribosomal protein
DS15a - fruit fly (Drosophila melanogaster)
>gi|311606|emb|CAA79771| (Z21673) ribosomal protein 15a
(40S subunit) [Drosophila melanogaster]
Length = 130
Score = 58.2 bits (138), Expect = 6e-08
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E++ NLLPSR FG++++T+S G++DH E + + GGKILG+F+
Sbjct: 85 DIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
>gi|417715|sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24) >gi|283751|pir||A43907 ribosomal
protein S15a.e - sea urchin (Strongylocentrotus
purpuratus) >gi|241027|bbs|72598 (S72597)
SpS24=ribosomal protein S24 [Strongylocentrotus
purpuratus=sea urchins, Peptide, 130 aa]
[Strongylocentrotus purpuratus]
Length = 130
Score = 57.4 bits (136), Expect = 1e-07
Identities = 22/46 (47%), Positives = 38/46 (81%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++E++ +NLLPSR FG++++T+S G++DH E + + GGKILG+F+
Sbjct: 85 EMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
>gi|464711|sp|P33953|RS1A_KLUMA 40S RIBOSOMAL PROTEIN S15A (YS24) >gi|320167|pir||S30003 ribosomal
protein S15a.e - yeast (Kluyveromyces marxianus)
>gi|263484|bbs|122433 (S53434) S24-1=ribosomal protein
[Kluyveromyces marxianus, Peptide, 130 aa]
[Kluyveromyces marxianus]
Length = 130
Score = 57.4 bits (136), Expect = 1e-07
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
DVE++ ANLLP+R FG++I+T+S G++DH E + + GKILG+ Y
Sbjct: 85 DVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
>gi|1071974|pir||S51385 ribosomal protein S15a.e.c12 - yeast (Saccharomyces cerevisiae)
>gi|609410 (U19103) Rps24bp: 40S ribosomal protein S22
[Saccharomyces cerevisiae]
Length = 130
Score = 57.0 bits (135), Expect = 1e-07
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E++ ANLLP+R FG++I+T+S G++DH E + + GKILG+ Y
Sbjct: 85 DIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
>gi|133884|sp|P04648|RS22_YEAST 40S RIBOSOMAL PROTEIN S22 (YS24) (YP58) >gi|70916|pir||R4BY24
ribosomal protein S15a.e.c10 - yeast (Saccharomyces
cerevisiae) >gi|4407|emb|CAA25998| (X01962) ribosomal
protein S24 [Saccharomyces cerevisiae]
>gi|547605|emb|CAA54770| (X77688) ribosomal protein S24
[Saccharomyces cerevisiae] >gi|1008400|emb|CAA89485|
(Z49465) ORF YJL190c [Saccharomyces cerevisiae]
Length = 130
Score = 57.0 bits (135), Expect = 1e-07
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E++ ANLLP+R FG++I+T+S G++DH E + + GKILG+ Y
Sbjct: 85 DIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
>gi|3758866|emb|CAB11151| (Z98551) predicted using hexExon; MAL3P6.30 (PFC0735w), 40S
Ribosomal protein S15A, len: 131 aa; Similarity to 40S
ribosomal protein S15A. H.sapiens 40S ribosomal protein
S15A (SW:RS1A_HUMAN) BLAST Score: 505, sum P(1) =
1.3e...
Length = 130
Score = 55.8 bits (132), Expect = 3e-07
Identities = 22/46 (47%), Positives = 36/46 (77%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++E+ ++LPSR FGHLI+T+ G++DH E + +TGGK+LG+F+
Sbjct: 85 EIEKIITSILPSRLFGHLILTTPYGIMDHEEARRKHTGGKVLGFFF 130
>gi|1173217|sp|P46792|RS1A_AGABI 40S RIBOSOMAL PROTEIN S15A >gi|895693|emb|CAA55942| (X79405)
ribosomal protein S15a [Agaricus bisporus]
>gi|1580937|prf||2116270A ribosomal protein S15a
[Agaricus bisporus]
Length = 130
Score = 53.9 bits (127), Expect = 1e-06
Identities = 22/45 (48%), Positives = 33/45 (72%)
Query: 727 VERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
+E++ LLPSRG G +++T+S G++DH E + N GGK+LGY Y
Sbjct: 86 IEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130
>gi|3687245 (AC005169) putative ribosomal protein [Arabidopsis thaliana]
Length = 129
Score = 51.5 bits (121), Expect = 6e-06
Identities = 17/46 (36%), Positives = 34/46 (72%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
++ +Y LP+R +G++++T+ G++DH E I+ N GG++LG+F+
Sbjct: 84 EIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129
>gi|2281972|emb|CAB10850| (Z98056) 40s ribosomal protein s15 or s22 [Schizosaccharomyces
pombe] >gi|2414597|emb|CAB16574| (Z99295) 40s ribosomal
protein s15a [Schizosaccharomyces pombe]
>gi|3219307|dbj|BAA28848| (AB015353) ribosomal protein
S22 homolog [Schizosaccharomyces pombe]
Length = 130
Score = 51.2 bits (120), Expect = 8e-06
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
D+E++ LLPSR G +++T+S+G++ H E + GGKILG+FY
Sbjct: 85 DIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130
>gi|134016|sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8 (HMAS8) (HS16) >gi|81010|pir||S16537
ribosomal protein S8 - Haloarcula marismortui
>gi|48863|emb|CAA41286| (X58395) ribosomal protein
[Haloarcula marismortui] >gi|228186|prf||1718307C
ribosomal protein S8 [Haloarcula marismortui]
Length = 130
Score = 44.1 bits (102), Expect = 0.001
Identities = 16/46 (34%), Positives = 29/46 (62%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
+ E++ LP+R +G L+VT+S G++ H E + GG+++ Y Y
Sbjct: 85 EFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130
>gi|134020|sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8 >gi|70917|pir||R3MX8 ribosomal protein S8
- Methanococcus vannielii >gi|44763|emb|CAA34695|
(X16720) rpS8 (AA 1-130) [Methanococcus vannielii]
Length = 130
Score = 44.1 bits (102), Expect = 0.001
Identities = 18/46 (39%), Positives = 29/46 (62%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
+ E++ LP++GFG LIV++ KGL+ H E GG+++ Y Y
Sbjct: 85 EFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130
>gi|1710778|sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P >gi|2119073|pir||F64358 ribosomal protein
S8 - Methanococcus jannaschii >gi|1591172 (U67497) SSU
ribosomal protein S8P (rpsH) [Methanococcus jannaschii]
Length = 130
Score = 43.4 bits (100), Expect = 0.002
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 724 ERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
E++ LP+R FG LIV++++G++ H E + GG++L Y Y
Sbjct: 87 EKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130
>gi|3122823|sp|O26126|RS8_METTH 30S RIBOSOMAL PROTEIN S8P >gi|2621046 (AE000795) ribosomal protein
S15a (E.coli S8) [Methanobacterium thermoautotrophicum]
Length = 133
Score = 41.8 bits (96), Expect = 0.005
Identities = 15/46 (32%), Positives = 29/46 (62%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
+ E++ LP++ FG +IV++ +G++ H+E GG++L Y Y
Sbjct: 88 EFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 133
>gi|3258195|dbj|BAA30878| (AP000007) 130aa long hypothetical 30S ribosomal protein S8
[Pyrococcus horikoshii]
Length = 130
Score = 41.0 bits (94), Expect = 0.009
Identities = 16/46 (34%), Positives = 29/46 (62%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
+ E++ LP+ FG LIV++S+G++ H+E GG+++ Y Y
Sbjct: 85 EYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130
>gi|3914919|sp|O28369|RS8_ARCFU 30S RIBOSOMAL PROTEIN S8P >gi|2648631 (AE000971) SSU ribosomal
protein S8P (rps8E) [Archaeoglobus fulgidus]
Length = 131
Score = 40.6 bits (93), Expect = 0.012
Identities = 17/46 (36%), Positives = 28/46 (59%)
Query: 730 DVERYRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
+ E Y LP+R FG LIV+++KG++ ++ + GG +L Y Y
Sbjct: 86 EYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 131
>gi|2811038|sp|O05636|RS8_SULAC 30S RIBOSOMAL PROTEIN S8 >gi|2052261|emb|CAA69092| (Y07778)
ribosomal protein S8 [Sulfolobus acidocaldarius]
Length = 133
Score = 39.9 bits (91), Expect = 0.020
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 718 YRANLLPSRGFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
Y LPS+ G +I+++ KG++ HR+ I+ GG LGY Y
Sbjct: 92 YIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133
>gi|4493951|emb|CAB38987| (AL034556) predicted using hexExon; MAL3P5.16 (PFC0650w),
Hypothetical protein, len: 1282 aa [Plasmodium
falciparum]
Length = 1281
Score = 33.2 bits (74), Expect = 1.9
Identities = 17/39 (43%), Positives = 27/39 (68%)
Query: 269 NKYNISSYDNNKIFYKIYEYNIIY*RLVVKNIIKYIYHS 385
NKY+++S +NKI KI+ +NI R ++ +I+ YIY S
Sbjct: 862 NKYDMNSTMDNKIIKKIHIFNI---RKILNHILSYIYIS 897
>gi|2500419|sp|P56015|RS8_HELPY 30S RIBOSOMAL PROTEIN S8 >gi|2314469|gb|AAD08346.1| (AE000633)
ribosomal protein S8 (rps8) [Helicobacter pylori 26695]
>gi|4155835 (AE001547) putative 30S RIBOSOMAL PROTEIN S8
[Helicobacter pylori J99]
Length = 131
Score = 33.2 bits (74), Expect = 1.9
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 691 GFGHLIVTSSKGLIDHRECIQHNTGGKIL 605
G+G ++V++SKG+I + E + N GG++L
Sbjct: 99 GYGVIVVSTSKGVITNEEAYRQNVGGEVL 127
>gi|4512418|dbj|BAA75285| (AB017508) rpsH homologue (identity of 82% to B. subtilis )
[Bacillus halodurans]
Length = 132
Score = 31.7 bits (70), Expect = 5.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 691 GFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
G G IV++SKG++ +E Q GG++L Y +
Sbjct: 100 GLGIAIVSTSKGVMTDKEARQQQVGGEVLAYVW 132
>gi|3122829|sp|O32997|RS8_MYCLE 30S RIBOSOMAL PROTEIN S8 >gi|2344848|emb|CAB11450| (Z98756)
ribosomal protein S8 [Mycobacterium leprae]
Length = 132
Score = 30.9 bits (68), Expect = 9.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 691 GFGHLIVTSSKGLIDHRECIQHNTGGKILGYFY 593
G G +I+++S GL+ R+ + GG++L Y +
Sbjct: 100 GLGVVIISTSSGLLTDRQAARQGVGGEVLAYVW 132
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69471221
Number of Sequences: 369800
Number of extensions: 825233
Number of successful extensions: 1358
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 31
length of query: 244
length of database: 113023754
effective HSP length: 53
effective length of query: 190
effective length of database: 93424354
effective search space: 17750627260
effective search space used: 17750627260
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)