BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII46R
(867 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3367790|emb|CAA20055| (AL031154) putative transmembrane trans... 47 1e-04
gi|4539333|emb|CAB37481| (AL035539) putative amino acid transpor... 39 0.042
gi|549723|sp|P36062|YKO6_YEAST HYPOTHETICAL 75.5 KD PROTEIN IN S... 37 0.16
gi|3873920|emb|CAA97776| (Z73423) cDNA EST EMBL:Z14908 comes fro... 36 0.28
gi|2576363 (U39783) amino acid transport protein [Arabidopsis th... 36 0.36
gi|1730758|sp|P50944|YNK1_YEAST HYPOTHETICAL 80.0 KD PROTEIN IN ... 36 0.47
gi|2213629 (AC000103) F21J9.21 [Arabidopsis thaliana] 34 1.1
gi|3880932|emb|CAA16336| (AL021481) cDNA EST EMBL:T01200 comes f... 34 1.1
gi|1351692|sp|Q10074|YAN9_SCHPO HYPOTHETICAL 73.1 KD PROTEIN C3H... 34 1.4
gi|3970652|emb|CAA54630| (X77499) amino acid permease [Arabidops... 34 1.4
gi|1076288|pir||S51168 amino acid permease AAP3 - Arabidopsis th... 34 1.4
gi|453980|emb|CAA82843| (Z29946) gamma-TIP-like protein [Trifoli... 34 1.8
gi|80410|pir||A26470 spore germination protein II - Bacillus sub... 34 1.8
gi|474198 (U00040) contains an ANK repeat similar to ANK motifs ... 34 1.8
gi|1353046|sp|P47082|YJX1_YEAST HYPOTHETICAL 65.3 KD PROTEIN IN ... 34 1.8
gi|3329286 (AE001354) Tyrosine Transport [Chlamydia trachomatis] 34 1.8
gi|1708033|sp|P07869|GRA2_BACSU SPORE GERMINATION PROTEIN A2 >gi... 33 2.4
gi|3402690 (AC004697) hypothetical protein, 3' partial [Arabidop... 33 2.4
gi|2634160|emb|CAB13660| (Z99113) similar to spore germination p... 33 2.4
gi|1351502|sp|P47427|Y181_MYCGE HYPOTHETICAL PROTEIN MG181 >gi|1... 33 3.1
gi|3979936|emb|CAA22315| (AL034393) predicted using Genefinder; ... 32 4.1
gi|4218957 (AF091712) cytoplasmic polyadenylation element-bindin... 32 4.1
gi|4519513|dbj|BAA75638| (AB011681) ZOR-2 [Danio rerio] 32 5.4
gi|1651425|dbj|BAA35631| (D90728) Dimethylsulfoxide reductase ch... 32 7.0
gi|882738 (U29581) ORF_o409 [Escherichia coli] >gi|1789211 (AE00... 32 7.0
gi|118699|sp|P18777|DMSC_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDU... 32 7.0
gi|1040929 (U35260) NADH dehydrogenase subunit 6 [Anopheles aqua... 32 7.0
gi|1040943 (U35267) NADH dehydrogenase subunit 6 [Anopheles nune... 32 7.0
gi|1040947 (U35269) NADH dehydrogenase subunit 6 [Anopheles nune... 32 7.0
gi|4377294|gb|AAD19105| (AE001677) Tyrosine Transport [Chlamydia... 32 7.0
gi|2231134 (L43052) polyprotein [equine rhinovirus 1] 31 9.2
gi|3293031|emb|CAA07563| (AJ007574) amino acid carrier [Ricinus ... 31 9.2
gi|541848|pir||A48187 amino acid transport protein I - Arabidops... 31 9.2
gi|2654019 (AF031649) neutral amino acid transport system II [Ar... 31 9.2
gi|1040935 (U35263) NADH dehydrogenase subunit 6 [Anopheles bena... 31 9.2
gi|1588015|prf||2207404A polyprotein [equine rhinovirus 1] 31 9.2
gi|3043878 (U95840) transmembrane protein Tmp5 [Lactococcus lactis] 31 9.2
>gi|3367790|emb|CAA20055| (AL031154) putative transmembrane transporter [Schizosaccharomyces
pombe]
Length = 420
Score = 47.3 bits (110), Expect = 1e-04
Identities = 30/124 (24%), Positives = 57/124 (45%)
Query: 442 MGKISVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAY 621
+GK F + + T+ G G+LSLP AF G L + +F+ LY ++ A
Sbjct: 16 IGKAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQCAA 75
Query: 622 YSKLEDPTFFSVCANANPVLGYLVDIFVILNGFLTAAIYICNISNWIKDSILPTVKINNA 801
+F +V + P L + D + + F A Y+ + + + I P++ + ++
Sbjct: 76 RLPRGKASFAAVAKHTFPSLAVVFDASIAVKCFGVAVSYLVIVGD-LMPQIAPSLGL-SS 133
Query: 802 PLYL 813
P++L
Sbjct: 134 PMFL 137
>gi|4539333|emb|CAB37481| (AL035539) putative amino acid transport protein [Arabidopsis
thaliana]
Length = 436
Score = 39.1 bits (89), Expect = 0.042
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 454 SVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAAT------ 615
S FK + + G GVL LP AF GWL+ +L V ++T + + T
Sbjct: 35 SQFKTFANVFIAVVGAGVLGLPYAFKRTGWLMGVLLLVSVSVLTHHCMMLLVYTRRKLDS 94
Query: 616 --AYYSKLED--PTFFSVCANANPVLGYLVDIFVILN 714
A SK+ F+VC + + +VD+F+IL+
Sbjct: 95 FNAGISKIGSFGDLGFAVCGSLGRI---VVDLFIILS 128
>gi|549723|sp|P36062|YKO6_YEAST HYPOTHETICAL 75.5 KD PROTEIN IN SDH1-CIM5/YTA3 INTERGENIC REGION
>gi|539210|pir||S37976 hypothetical protein YKL146w -
yeast (Saccharomyces cerevisiae)
>gi|486252|emb|CAA81988| (Z28146) ORF YKL146w
[Saccharomyces cerevisiae]
Length = 692
Score = 37.1 bits (84), Expect = 0.16
Identities = 19/56 (33%), Positives = 28/56 (49%)
Query: 448 KISVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAAT 615
K S K L++L + G GVL LP AF N GW S + ++++ S+ T
Sbjct: 296 KSSTVKAVLLLLKSFVGTGVLFLPKAFHNGGWGFSALCLLSCALISYGCFVSLITT 351
>gi|3873920|emb|CAA97776| (Z73423) cDNA EST EMBL:Z14908 comes from this gene; cDNA EST
EMBL:M89403 comes from this gene; cDNA EST EMBL:T00022
comes from this gene [Caenorhabditis elegans]
Length = 506
Score = 36.4 bits (82), Expect = 0.28
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 445 GKISVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFIS 594
G S G L + + G G L+LP AF AGWL+S L +++++
Sbjct: 11 GTYSQTVGLLYVFNLIVGTGALALPKAFQTAGWLLSITLLTFSAFMSYVA 60
>gi|2576363 (U39783) amino acid transport protein [Arabidopsis thaliana]
Length = 432
Score = 36.0 bits (81), Expect = 0.36
Identities = 16/37 (43%), Positives = 23/37 (61%)
Query: 478 MLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTF 588
++ ++ G GVL LP AF AGWL ++ IVG T+
Sbjct: 40 IIVSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFATY 76
>gi|1730758|sp|P50944|YNK1_YEAST HYPOTHETICAL 80.0 KD PROTEIN IN POL1-RAS2 INTERGENIC REGION
>gi|2132745|pir||S58251 probable membrane protein
YNL101w - yeast (Saccharomyces cerevisiae)
>gi|929852|emb|CAA90525| (Z50161) ORF N2185
[Saccharomyces cerevisiae] >gi|1302014|emb|CAA95977|
(Z71377) ORF YNL101w [Saccharomyces cerevisiae]
Length = 713
Score = 35.6 bits (80), Expect = 0.47
Identities = 20/52 (38%), Positives = 25/52 (47%)
Query: 445 GKISVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLY 600
G S K LI+L + G GVL LP AF N G S + GI ++ Y
Sbjct: 295 GTTSTKKVFLILLKSFIGTGVLFLPNAFHNGGLFFSVSMLAFFGIYSYWCYY 346
>gi|2213629 (AC000103) F21J9.21 [Arabidopsis thaliana]
Length = 449
Score = 34.4 bits (77), Expect = 1.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 481 LTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSI 606
+T M G GVLSLP A N GW + + I+T +L+ +
Sbjct: 41 VTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQM 82
>gi|3880932|emb|CAA16336| (AL021481) cDNA EST EMBL:T01200 comes from this gene; cDNA EST
EMBL:D72618 comes from this gene; cDNA EST yk343c3.3
comes from this gene; cDNA EST EMBL:Z14821 comes from
this gene [Caenorhabditis elegans]
Length = 607
Score = 34.4 bits (77), Expect = 1.1
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 478 MLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYY-------SKLE 636
M+ M G G+LSLP+AF ++G + IL ++ ++ + + A++ ++
Sbjct: 58 MVKAMLGTGLLSLPLAFKHSGLFLGLILTVLICLICLYCMRQVVFAAHFVCNRNGRDLID 117
Query: 637 DPTFFSVCANANPVL----GYLVDIFVILNGFLTAAIYICNISNWIKDSILPTVKINNAP 804
P GY V +N F++ + C ++ D+ L NN
Sbjct: 118 YANIMRGAVEMGPPWIKRNGYFFKQLVNVNMFISQLGFCCVYFVFMADN-LEDFFNNNTS 176
Query: 805 LYLVTIGVLLVLFLPSM 855
++L +L+L +P +
Sbjct: 177 IHLSKAVWMLLLLIPML 193
>gi|1351692|sp|Q10074|YAN9_SCHPO HYPOTHETICAL 73.1 KD PROTEIN C3H1.09C IN CHROMOSOME I
>gi|1103510|emb|CAA92262.1| (Z68144) major facilitator
superfamily protein [Schizosaccharomyces pombe]
Length = 656
Score = 34.0 bits (76), Expect = 1.4
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 445 GKISVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAAT 615
G S K L++L + G GVL LP AF G + S+ IVG+++ I + T
Sbjct: 273 GNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQT 329
>gi|3970652|emb|CAA54630| (X77499) amino acid permease [Arabidopsis thaliana]
Length = 476
Score = 34.0 bits (76), Expect = 1.4
Identities = 18/53 (33%), Positives = 28/53 (51%)
Query: 454 SVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAA 612
SV+ S ++T + G GVLSL A GWL ++ + VT+ + +AA
Sbjct: 33 SVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFSAVTYFTSSLLAA 85
>gi|1076288|pir||S51168 amino acid permease AAP3 - Arabidopsis thaliana
Length = 475
Score = 34.0 bits (76), Expect = 1.4
Identities = 18/53 (33%), Positives = 28/53 (51%)
Query: 454 SVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAA 612
SV+ S ++T + G GVLSL A GWL ++ + VT+ + +AA
Sbjct: 33 SVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFSAVTYFTSSLLAA 85
>gi|453980|emb|CAA82843| (Z29946) gamma-TIP-like protein [Trifolium repens]
Length = 247
Score = 33.6 bits (75), Expect = 1.8
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 445 GKISVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGI---------VTFISL 597
G I++F+G + ++ + G + SL + F+ A + + L VGI +TF +
Sbjct: 92 GNITLFRGIVYIIAQLIGSVLASLLLVFVTASSVPAFALSEGVGIGPALVLEIVMTFGLV 151
Query: 598 YSIAATAYYSKLEDPTFFSVCANANPVLGYLVDIFVILNGFLTAA 732
Y++ ATA DP ++ A +G++V +++ G T A
Sbjct: 152 YTVYATAV-----DPKKGNIGIIAPIAIGFIVGANILVGGAFTGA 191
>gi|80410|pir||A26470 spore germination protein II - Bacillus subtilis (strain 168)
Length = 364
Score = 33.6 bits (75), Expect = 1.8
Identities = 23/59 (38%), Positives = 36/59 (60%), Gaps = 4/59 (6%)
Query: 430 KNTPMGKISVFKGSLIMLTTMFGVGVLSLPVAFMNA----GWLVSTILFGIVGIVTFISL 597
K TP+ K++ F+G I+ TM G G+L+LP A GW ++ IL G + + FI L
Sbjct: 4 KQTPL-KLNTFQGISIVANTMLGAGLLTLPRALTTKANTDGW-ITLILEGFI-FIFFIYL 60
Query: 598 YSI 606
++
Sbjct: 61 NTL 63
>gi|474198 (U00040) contains an ANK repeat similar to ANK motifs 2 and 12 of
human ankyrin [Caenorhabditis elegans]
Length = 1691
Score = 33.6 bits (75), Expect = 1.8
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Query: 684 IFS*YICNTQRIFNCSHLYLQYFKLDQRQYFTNG-KNQ*CTSISC 815
I++ + N +RIF + L FK+ Q QYFTN KN + +SC
Sbjct: 100 IWNPFESNIRRIFAFDRVLLSLFKISQFQYFTNSKKNSIISDLSC 144
>gi|1353046|sp|P47082|YJX1_YEAST HYPOTHETICAL 65.3 KD PROTEIN IN PRE3-SAG1 INTERGENIC REGION
>gi|1077860|pir||S55188 hypothetical protein YJR001w -
yeast (Saccharomyces cerevisiae)
>gi|854573|emb|CAA60922| (X87611) ORF YJR83.4
[Saccharomyces cerevisiae] >gi|1015620|emb|CAA89523|
(Z49501) ORF YJR001w [Saccharomyces cerevisiae]
Length = 602
Score = 33.6 bits (75), Expect = 1.8
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 481 LTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTF 588
+ + G+G+L+LP+ AGW++ + I + TF
Sbjct: 218 INVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATF 253
>gi|3329286 (AE001354) Tyrosine Transport [Chlamydia trachomatis]
Length = 415
Score = 33.6 bits (75), Expect = 1.8
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 421 KALKNTPMGKISVFK---GSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFI 591
K+++ + G + + K G+L++ T G GVL++PV+ G+L +T+L +I
Sbjct: 7 KSMRLSKKGILMINKMLGGALLVAGTTIGAGVLAVPVSTSEGGFLPTTLL--------YI 58
Query: 592 SLYSIAATAYYSKLEDPTFFSVCANANPV 678
+ IA + Y LE T+ N N V
Sbjct: 59 VSWFIAVASGYCFLEVLTWTHSRKNVNMV 87
>gi|1708033|sp|P07869|GRA2_BACSU SPORE GERMINATION PROTEIN A2 >gi|1236178 (M16189) formerly called
gene II [Bacillus subtilis] >gi|2635803|emb|CAB15296|
(Z99120) gerAB [Bacillus subtilis]
>gi|2832823|emb|CAA11747| (AJ223978) GerAB protein
[Bacillus subtilis]
Length = 365
Score = 33.2 bits (74), Expect = 2.4
Identities = 23/59 (38%), Positives = 36/59 (60%), Gaps = 5/59 (8%)
Query: 430 KNTPMGKISVFKGSLIMLTTMFGVGVLSLPVAFMNA-----GWLVSTILFGIVGIVTFIS 594
K TP+ K++ F+G I+ TM G G+L+LP A GW ++ IL G + + FI
Sbjct: 4 KQTPL-KLNTFQGISIVANTMLGAGLLTLPRALTTKANTPDGW-ITLILEGFI-FIFFIY 60
Query: 595 LYSI 606
L ++
Sbjct: 61 LNTL 64
>gi|3402690 (AC004697) hypothetical protein, 3' partial [Arabidopsis thaliana]
Length = 381
Score = 33.2 bits (74), Expect = 2.4
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 439 PMGKISVFKGSLIM-LTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTF 588
PM + S + +++ L + GVG+LS P A GWL ILF + G+++F
Sbjct: 155 PMSRNSSYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILF-VYGLLSF 204
>gi|2634160|emb|CAB13660| (Z99113) similar to spore germination protein [Bacillus subtilis]
Length = 363
Score = 33.2 bits (74), Expect = 2.4
Identities = 30/134 (22%), Positives = 62/134 (45%), Gaps = 6/134 (4%)
Query: 436 TPMGKISVFKGSLIMLTTMFGVGVLSLPVAFMNA-----GWLVSTILFGIVGIVTFISLY 600
+P KI+ + ++I++ M GVL+LP GW +S +L G++ ++ + +
Sbjct: 3 SPTSKITTAQATIIIINYMLAAGVLTLPRTVTEQTQSPDGW-ISVLLGGVLAVIAGMIIA 61
Query: 601 SIAATAYYSKLEDPTFFSVCAN-ANPVLGYLVDIFVILNGFLTAAIYICNISNWIKDSIL 777
++ + TF+ + LG+L+ I V + FL + + + I D L
Sbjct: 62 KLS-----QQYPKETFYEYSRHIVGKWLGHLISI-VFITYFLALGAFEVRVMSEIVDFFL 115
Query: 778 PTVKINNAPLYLVTIGVLLV 837
+ P + + + VL +
Sbjct: 116 ----LEGTPSWAIIMTVLWI 131
>gi|1351502|sp|P47427|Y181_MYCGE HYPOTHETICAL PROTEIN MG181 >gi|1361629|pir||A64220 hypothetical
protein MG181 - Mycoplasma genitalium (SGC3) >gi|3844777
(U39697) conserved hypothetical protein [Mycoplasma
genitalium]
Length = 420
Score = 32.8 bits (73), Expect = 3.1
Identities = 16/60 (26%), Positives = 32/60 (52%)
Query: 273 MISVRIIIGYFRKSSVYMVIFFTNETFYLSKFPGRLRPTMVCDLRFLERI*ACTNWFRYR 94
+I V + IG+ +S +++ + F F+++K PGR + + + L + NWF +R
Sbjct: 31 VILVFVPIGFVFQSVIFLFVTFV---FFIAKLPGRFYSSAIKSITLLFLLLLFVNWFTFR 87
>gi|3979936|emb|CAA22315| (AL034393) predicted using Genefinder; cDNA EST yk384a7.5 comes
from this gene; cDNA EST yk443f5.5 comes from this gene;
cDNA EST yk443f5.3 comes from this gene; cDNA EST
yk384a7.3 comes from this gene [Caenorhabditis elegans]
Length = 503
Score = 32.5 bits (72), Expect = 4.1
Identities = 29/138 (21%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 451 ISVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSK 630
IS ++ ++ M G G++SLP+A +G + +L + I + + + +
Sbjct: 39 ISWLMAAVFIVGDMMGAGMISLPLALGRSGLIAGCVLILLASIFSGYTGIQLGENWEMMQ 98
Query: 631 LEDPTFFSVCANANPVLGY---------LVDIFVILNGFLTAAIYICNISNWIKDSILPT 783
+ P + + C P + Y +V + ++++ FL A + + IS ++L T
Sbjct: 99 IRWPKYRTHCRRPYPEMAYRALGNWARQVVAVCLVVSQFLIACVLLL-ISAENFTNLLNT 157
Query: 784 VKINNAPLYLVTIGVLLVLFLPSMIDS 864
+ + + + LVL+ S++ S
Sbjct: 158 FFHLHLDFCVFIVAIALVLWPFSLLQS 184
>gi|4218957 (AF091712) cytoplasmic polyadenylation element-binding protein
[Spisula solidissima]
Length = 650
Score = 32.5 bits (72), Expect = 4.1
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Query: 465 RITYHADDNVWSGCSITPSSIYECR-MACFNYIIRYCW 575
+I + +D++ S CS+ P Y CR + CF Y R CW
Sbjct: 586 QIDPYLEDSICSLCSVQPGP-YFCRDLQCFKYFCRTCW 622
>gi|4519513|dbj|BAA75638| (AB011681) ZOR-2 [Danio rerio]
Length = 522
Score = 32.1 bits (71), Expect = 5.4
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 465 RITYHADDNVWSGCSITPSSIYECRMACFNYIIRYCWN 578
+I + DD++ CS P + ACF Y R CW+
Sbjct: 461 QIDPYLDDSICQICSSQPGPFFCRAQACFKYYCRSCWH 498
>gi|1651425|dbj|BAA35631| (D90728) Dimethylsulfoxide reductase chain C. [Escherichia coli]
Length = 195
Score = 31.7 bits (70), Expect = 7.0
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 541 WLVSTILFGIVGIVTFISLYSIAAT--AYYSKLEDPTFFSVCANANPVLGYLVDIFVILN 714
WL+ T++ G++ + + +Y+ T +YS FF P+LGYL+
Sbjct: 26 WLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLL------- 78
Query: 715 GFLTAAIYICNISNWIKDSILPTVKINNAPLYLVTIGVLLVL 840
+ + + W +LP + + L LV GV+ V+
Sbjct: 79 ------LSLAGVDGWAM-RLLPAISV----LALVVSGVVSVM 109
>gi|882738 (U29581) ORF_o409 [Escherichia coli] >gi|1789211 (AE000368)
putative transporter protein [Escherichia coli]
Length = 409
Score = 31.7 bits (70), Expect = 7.0
Identities = 30/126 (23%), Positives = 55/126 (42%), Gaps = 2/126 (1%)
Query: 469 SLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSKLE--DP 642
S + T G G L LP+ +AG +V I + +T+ ++ SK +
Sbjct: 13 SFALYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQFILSSKTSAGEG 72
Query: 643 TFFSVCANANPVLGYLVDIFVILNGFLTAAIYICNISNWIKDSILPTVKINNAPLYLVTI 822
+V +G L+ + F+ IY I+N + + + + I+ LV++
Sbjct: 73 ITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHMVIDLRIRMLVSL 132
Query: 823 GVLLVLFL 846
GV+L+L L
Sbjct: 133 GVVLILNL 140
>gi|118699|sp|P18777|DMSC_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN C (DMSO REDUCTASE
ANCHOR SUBUNIT) >gi|78398|pir||S03787 dimethylsulfoxide
reductase chain C - Escherichia coli >gi|145757 (J03412)
anaerobic dimethyl sulfoxide reductase [Escherichia
coli] >gi|1651423|dbj|BAA35628| (D90727)
Dimethylsulfoxide reductase chain C. [Escherichia coli]
>gi|1787123 (AE000191) anaerobic dimethyl sulfoxide
reductase subunit C [Escherichia coli]
Length = 287
Score = 31.7 bits (70), Expect = 7.0
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 541 WLVSTILFGIVGIVTFISLYSIAAT--AYYSKLEDPTFFSVCANANPVLGYLVDIFVILN 714
WL+ T++ G++ + + +Y+ T +YS FF P+LGYL+
Sbjct: 118 WLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLL------- 170
Query: 715 GFLTAAIYICNISNWIKDSILPTVKINNAPLYLVTIGVLLVL 840
+ + + W +LP + + L LV GV+ V+
Sbjct: 171 ------LSLAGVDGWAM-RLLPAISV----LALVVSGVVSVM 201
>gi|1040929 (U35260) NADH dehydrogenase subunit 6 [Anopheles aquasalis]
Length = 174
Score = 31.7 bits (70), Expect = 7.0
Identities = 30/131 (22%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 466 GSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSKLEDPT 645
G ++++ T + S+ V +++ I G + ++ FI + S+++ +S T
Sbjct: 27 GLMLLIQTFLTCLITSIYVKTFWFSYVLFLIFLGGM-LILFIYVTSLSSNEMFSMSFSLT 85
Query: 646 FFS-VCANANPVLGYLVDIFVILNGFLTAAIY--ICNISNWIKDSILPTVKINNAPLYLV 816
S + + +L +++D +I + F+T + N++N I ++IL K+ N P L+
Sbjct: 86 TISLIIFSIFTILFFIIDKSLI-DQFITNMEMEKLSNLNNLINENILSLNKMYNFPTNLI 144
Query: 817 TIGVLLVLFLPSMI 858
T+ ++ LFL ++
Sbjct: 145 TLLLINYLFLTLLV 158
>gi|1040943 (U35267) NADH dehydrogenase subunit 6 [Anopheles nuneztovari]
Length = 174
Score = 31.7 bits (70), Expect = 7.0
Identities = 30/131 (22%), Positives = 67/131 (50%), Gaps = 3/131 (2%)
Query: 466 GSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSKLEDPT 645
G ++++ T + S+ V +++ I G + ++ FI + S+++ +S T
Sbjct: 27 GLMLLIQTFLTCLITSIYVKTFWFSYVLFLIFLGGM-LILFIYVTSLSSNEMFSMSFSLT 85
Query: 646 FFS-VCANANPVLGYLVDIFVILNGFLTAAIY--ICNISNWIKDSILPTVKINNAPLYLV 816
S + + +L +++D +I F+T + N++N I ++IL K+ N P L+
Sbjct: 86 MISLIIFSIFTILFFIIDKSLI-EQFITNMEMEKLSNMNNLINENILSLNKMYNFPTNLI 144
Query: 817 TIGVLLVLFLPSMI 858
T+ ++ LFL ++
Sbjct: 145 TLLLINYLFLTLLV 158
>gi|1040947 (U35269) NADH dehydrogenase subunit 6 [Anopheles nuneztovari]
Length = 174
Score = 31.7 bits (70), Expect = 7.0
Identities = 30/131 (22%), Positives = 67/131 (50%), Gaps = 3/131 (2%)
Query: 466 GSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSKLEDPT 645
G ++++ T + S+ V +++ I G + ++ FI + S+++ +S T
Sbjct: 27 GLMLLIQTFLTCLITSIYVKTFWFSYVLFLIFLGGM-LILFIYVTSLSSNEMFSMSFSLT 85
Query: 646 FFS-VCANANPVLGYLVDIFVILNGFLTAAIY--ICNISNWIKDSILPTVKINNAPLYLV 816
S + + +L +++D +I F+T + N++N I ++IL K+ N P L+
Sbjct: 86 MISLIIFSIFTILFFIIDKSLI-EQFITNMEMEKLSNMNNLINENILSLNKMYNFPTNLI 144
Query: 817 TIGVLLVLFLPSMI 858
T+ ++ LFL ++
Sbjct: 145 TLLLINYLFLTLLV 158
>gi|4377294|gb|AAD19105| (AE001677) Tyrosine Transport [Chlamydia pneumoniae]
>gi|4377296|gb|AAD19107| (AE001677) Tyrosine Transport
[Chlamydia pneumoniae]
Length = 396
Score = 31.7 bits (70), Expect = 7.0
Identities = 21/85 (24%), Positives = 41/85 (47%)
Query: 457 VFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSKLE 636
V GSL++ + G GVL++PV G+ +T L+ + + + S + + K E
Sbjct: 5 VLGGSLLIAGSAIGAGVLAVPVLTAKGGFFPATFLYIVSWLFSMASGLCLLEVMTWMK-E 63
Query: 637 DPTFFSVCANANPVLGYLVDIFVIL 711
++ + A +LG++ I + L
Sbjct: 64 SKNPVNMLSMAESILGHVGKISICL 88
>gi|2231134 (L43052) polyprotein [equine rhinovirus 1]
Length = 2247
Score = 31.3 bits (69), Expect = 9.2
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 524 ATGSDRTPTPNIVVSMISDPLKTEIFPIGVFFNAFEKKLK 405
A + RT P +VV +I+D E+F G FF+ F++KL+
Sbjct: 1059 AVAAMRTKDPVVVVMLIAD-FGLEVFDTGFFFSYFQEKLQ 1097
>gi|3293031|emb|CAA07563| (AJ007574) amino acid carrier [Ricinus communis]
Length = 486
Score = 31.3 bits (69), Expect = 9.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 454 SVFKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAA 612
+V+ S ++T + G GVLSL A GW+ + + +VT+ + ++A
Sbjct: 42 TVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMFLFSLVTYYTSTLLSA 94
>gi|541848|pir||A48187 amino acid transport protein I - Arabidopsis thaliana
>gi|22641|emb|CAA47603| (X67124) amino acid permease I
[Arabidopsis thaliana] >gi|404019 (L16240) amino acid
transporter [Arabidopsis thaliana]
Length = 485
Score = 31.3 bits (69), Expect = 9.2
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 478 MLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIA 609
++T + G GVLSL A GW+ T + I +T+ + +A
Sbjct: 48 IITAVIGSGVLSLAWAIAQLGWIAGTSILLIFSFITYFTSTMLA 91
>gi|2654019 (AF031649) neutral amino acid transport system II [Arabidopsis
thaliana]
Length = 485
Score = 31.3 bits (69), Expect = 9.2
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 478 MLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIA 609
++T + G GVLSL A GW+ T + I +T+ + +A
Sbjct: 48 IITAVIGSGVLSLAWAIAQLGWIAGTSILLIFSFITYFTSTMLA 91
>gi|1040935 (U35263) NADH dehydrogenase subunit 6 [Anopheles benarrochi]
Length = 174
Score = 31.3 bits (69), Expect = 9.2
Identities = 28/131 (21%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 466 GSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSKLEDPT 645
G ++++ T + S+ V +++ I G + ++ FI + S+++ +S T
Sbjct: 27 GLMLLIQTFLTCLITSIYVKTFWFSYVLFLIFLGGM-LILFIYVTSLSSNEMFSMSFKLT 85
Query: 646 FFSVCANANPVLGYLVDIFVILNGFLTAAIY--ICNISNWIKDSILPTVKINNAPLYLVT 819
S+ + + + + ++ F+T + NI+N I ++IL K+ N P L+T
Sbjct: 86 MISLMIFSIFTILFFIMDKSLIEQFITNMEMEKLSNINNLINENILSLNKMYNFPTNLIT 145
Query: 820 IGVLLVLFLPSMI 858
+ ++ LFL ++
Sbjct: 146 LLLINYLFLTLLV 158
>gi|1588015|prf||2207404A polyprotein [equine rhinovirus 1]
Length = 2232
Score = 31.3 bits (69), Expect = 9.2
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 524 ATGSDRTPTPNIVVSMISDPLKTEIFPIGVFFNAFEKKLK 405
A + RT P +VV +I+D E+F G FF+ F++KL+
Sbjct: 1059 AVAAMRTKDPVVVVMLIAD-FGLEVFDTGFFFSYFQEKLQ 1097
>gi|3043878 (U95840) transmembrane protein Tmp5 [Lactococcus lactis]
Length = 273
Score = 31.3 bits (69), Expect = 9.2
Identities = 26/84 (30%), Positives = 48/84 (56%), Gaps = 9/84 (10%)
Query: 460 FKGSLIMLTTMFGVGVLSLPVAFMNAGWLVSTILFGIVGIVTFISLYSIAATAYYSKLED 639
+ GS +M T F V S+P A +L + I FG++G+ +F+S ++ Y KL +
Sbjct: 86 YMGSFLMPFTFF-FDVKSMPDAL----YLFTIIKFGLIGLSSFVSFKNM-----YQKLSN 135
Query: 640 PTFFSVCANANPVLGYL---------VDIFVIL 711
T S+ + A ++ +L +D+F++L
Sbjct: 136 LTVLSI-STAFALMSFLTSQLEITMWLDVFILL 167
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164204862
Number of Sequences: 369800
Number of extensions: 3276256
Number of successful extensions: 7743
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7724
Number of HSP's gapped (non-prelim): 37
length of query: 289
length of database: 113023754
effective HSP length: 54
effective length of query: 234
effective length of database: 93054554
effective search space: 21774765636
effective search space used: 21774765636
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)