BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII38R
(840 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2496223|sp|Q60281|YZ21_METJA HYPOTHETICAL PROTEIN MJECL21 >gi... 38 0.12
gi|3845231 (AE001406) predicted membrane associated protein [Pla... 37 0.15
gi|83981|pir||F30010 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3... 37 0.20
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 36 0.27
gi|1679808|emb|CAA96222| (Z71579) Long ORF with correct codon us... 36 0.27
gi|3845203 (AE001399) GAF domain protein (cyclic nt signal trans... 34 1.0
gi|267209|sp|Q01040|UL32_HSVSA PROBABLE MAJOR ENVELOPE GLYCOPROT... 33 2.3
gi|731283|sp|P39723|YAE7_YEAST HYPOTHETICAL 72.1 KD PROTEIN IN A... 33 2.3
gi|1361350|pir||A56976 transfer complex protein TrsI - Staphyloc... 33 2.3
gi|4049658 (AF063866) ORF MSV045 hypothetical protein [Melanoplu... 33 2.3
gi|3800881 (AF098799) RanBP7/importin 7 [Homo sapiens] 33 3.0
gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL... 33 3.0
gi|166165 (J05393) pot. protein HP 83; putative [Bacteriophage T1] 32 3.9
gi|2650589 (AE001102) conserved hypothetical protein [Archaeoglo... 32 3.9
gi|4493993|emb|CAB39052| (AL034559) predicted using hexExon; MAL... 32 3.9
gi|4049911 (AF063866) ORF MSV227 leucine rich repeat gene family... 32 5.2
gi|3861178|emb|CAA15078| (AJ235272) ADENYLATE KINASE (adk) [Rick... 32 5.2
gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P... 32 6.8
gi|1679867|emb|CAA68058| (X99719) Sty SBLI [Salmonella enterica] 32 6.8
gi|1073751|pir||JC2569 tagE protein - Vibrio cholerae (strain 03... 32 6.8
gi|3845190 (AE001396) hypothetical protein [Plasmodium falciparum] 32 6.8
gi|2393890 (AF006064) protein kinase homolog [Fowlpox virus] 31 8.9
gi|2128949|pir||H64496 hypothetical protein MJ1577 - Methanococc... 31 8.9
>gi|2496223|sp|Q60281|YZ21_METJA HYPOTHETICAL PROTEIN MJECL21 >gi|2129037|pir||D64512 hypothetical
protein MJECL21 - Methanococcus jannaschii plasmid
pURB800 >gi|1522659 (L77118) M. jannaschii predicted
coding region MJECL21 [Methanococcus jannaschii]
Length = 432
Score = 37.5 bits (85), Expect = 0.12
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 234 EILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFKVCSFILQNFF-DRWKSNRYM 410
+I+K + + + + ++ EDILK + +NY K C FF D + + +
Sbjct: 24 DIIKKFFIPVIKERKNIEKEVEDILKVLRKNYCSGEYANKDCICAWFKFFEDVGRLHEAL 83
Query: 411 N-------------NELEESKEVFDKRIIYLAELAIEKIYLVEKKNGEWYRGPLLILMVV 551
N+L ES ++F Y+ + + +G + G + I
Sbjct: 84 ELKAFWEIIFPNHLNDLSESLQLFISNYAYMRPFGSSYSSIRVRIHG--FIGAVCIDRNF 141
Query: 552 NKINRQQLGSILSCVEKNFLLEHLNLVLQTNESLDIKFNILESCDLQEIHLN 707
N N + +I +C E N L L L T+++LD ++NI SC++ N
Sbjct: 142 NLHNNTWISNICNCYENN--LRMLGLGFYTSDTLDPRYNINPSCNINSTTTN 191
>gi|3845231 (AE001406) predicted membrane associated protein [Plasmodium
falciparum]
Length = 2013
Score = 37.1 bits (84), Expect = 0.15
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 57 VKDKNILEYQKNITFHINAQFLIFNFDK------IEKSSCLTVVKTE--LKKNYDNEYKI 212
+KDKN + + KN + + + +IF F K I CL + + + L++ Y+ + K+
Sbjct: 1508 LKDKNYIIHNKNTNYFFDNETIIFTFIKDNSSQNISLKKCLKIYQNKYYLQEKYEKKKKL 1567
Query: 213 -----FLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFKVCSFILQN 377
+L+K + +++K +E + + F + K I E +L E K I +
Sbjct: 1568 EKKITYLRKQLNDLIKTNYQNEQMKIDRCTFFFDK--KYINEEDILIYEYKK----IKKK 1621
Query: 378 FFDRWKSNRYMNNELEESKEVFDKRIIYLAELAIEKIYLVEKKNGE 515
F + K Y+ N+L++ + +K I +L+ + +Y+V N +
Sbjct: 1622 FKNTKKQKLYIINKLQKKCSILNK-IDFLSAFK-KNLYVVNFYNNQ 1665
>gi|83981|pir||F30010 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Sauroleishmania tarentolae mitochondrion (SGC6)
Length = 443
Score = 36.7 bits (83), Expect = 0.20
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 447 YQTLLYSLLIHCSYIYYFSIYQRNFVE*NYKP*TFLLLINNSHIYLSVYLHRINPIFHY- 271
Y+ + +L+ C++I F I F+ NY +F L + ++IY+++YL+ IN F Y
Sbjct: 4 YKKMFKFILVICNFILLFLIVTLIFI--NY---SFCLALQFNYIYINIYLNYINLWFIYF 58
Query: 270 ---LPTHQQLLLSVSLT----YFSVKIFYIHYHNSFLILFLLPSSMMIFLFYQN 130
+ LLS L YF + + YI ++ L+ M + +++
Sbjct: 59 MGLIVFFLIFLLSRKLVSYSKYFYILLSYIFIFFDVTLIILIDDFMCFMILFES 112
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 36.4 bits (82), Expect = 0.27
Identities = 44/126 (34%), Positives = 72/126 (56%), Gaps = 38/126 (30%)
Query: 402 YYFSIYQRN--FVE*NY--KP*TFLLLINNSHIYLSVYLHRINPIFHYLPTHQQLLLSVS 235
YY+ IY N F+ NY K F+L N ++I + L +N IF Y ++L + ++
Sbjct: 505 YYYKIYNNNYNFINSNYYFKKMNFILK-NFNNIQILNKLFYVNNIFIYYKYEKKLFIYLN 563
Query: 234 LT-------------YFSVKIFYIHYHNSFLILF-----------LLPSSMMIFLFYQN* 127
+ Y K+F+I +N+FL L+ LL + +++ Y N
Sbjct: 564 IINNIIIKKYLNFYKYTYNKLFFIKKYNNFLYLYEIFKYNWYKYLLLNNKYNLYIIYNN- 622
Query: 126 KLKTGHLYGR*YFSDIQVYFY--LLHDNN--------YKDKEYI 25
+LY Y +I +YF L ++NN YK+ YI
Sbjct: 623 --YIKYLYK--YNININLYFIKNLFYNNNNFIHNHIIYKNNYYI 662
>gi|1679808|emb|CAA96222| (Z71579) Long ORF with correct codon usage statistics. Specific for
S2 phage (not present in HP1c1 phage). Highly
hydrophobic N-terminus, probably membrane associated.
Function unknown. [Bacteriophage S2]
Length = 254
Score = 36.4 bits (82), Expect = 0.27
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 60 KDKNILEYQKNITFHINAQFLIFNFDKIEKSSC----------LTVVKTELKKNYDNEYK 209
KD ILE KN T + +F F+ D + + C L +K L K +YK
Sbjct: 115 KDPKILELSKNDTVDLMCKFDEFSLDSLSFNQCIFTEQFLDKILNPIKENLLKADSQDYK 174
Query: 210 IFLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFKVCSFILQNFFDR 389
Q M +L + D F +D+L +CEN + M + F+ +
Sbjct: 175 P--QSQMEGMLSLIATD----------FPDDVLNKVCENDVKNCNMDNIKK---SKFYPK 219
Query: 390 WKSNRYMNNELE-ESKEVFDK 449
KS +N+L+ K + DK
Sbjct: 220 TKSKE--SNDLDAHMKTLIDK 238
>gi|3845203 (AE001399) GAF domain protein (cyclic nt signal transduct.)
[Plasmodium falciparum]
Length = 1245
Score = 34.4 bits (77), Expect = 1.0
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 60 KDKNILEYQKNITFH----INAQFLIFNFDKIEKSSCLTVVKTELKKNYD---NEYKIFL 218
K N ++Y+ NI H I Q L+FN DK K LT K K+ D N K +
Sbjct: 677 KFDNYMDYKGNIKEHTANNIKHQLLLFNIDKTMKDEILTSDKINKDKSSDDIINSNKTYN 736
Query: 219 QKNML 233
+KN L
Sbjct: 737 EKNKL 741
>gi|267209|sp|Q01040|UL32_HSVSA PROBABLE MAJOR ENVELOPE GLYCOPROTEIN 68 >gi|73925|pir||WZBEP9 gene
68 protein - saimiriine herpesvirus 1 (strain 11)
>gi|60389|emb|CAA45691| (X64346) ORF 68; ECRF1; sim. to
other HV [Saimiriine herpesvirus 2] >gi|330997 (M86409)
first methionine codon in the ECLF1 ORF [Herpesvirus
saimiri]
Length = 436
Score = 33.2 bits (74), Expect = 2.3
Identities = 17/44 (38%), Positives = 33/44 (74%), Gaps = 6/44 (13%)
Query: 579 SILSCVEKNF-LLEHLNLVLQTNESLD-----IKFNILESCDLQEIHLNF 710
+I++C+E N LL+ ++ +L +N+ LD I ++++C +QEIH +F
Sbjct: 288 TIINCIENNVKLLDRISFIL-SNDELDFIQDPILKTVIQNCSIQEIHKHF 336
>gi|731283|sp|P39723|YAE7_YEAST HYPOTHETICAL 72.1 KD PROTEIN IN ACS1-GCV3 INTERGENIC REGION
>gi|1077481|pir||S51972 FUN42 protein - yeast
(Saccharomyces cerevisiae) >gi|595537 (U12980) Spi6p
[Saccharomyces cerevisiae]
Length = 622
Score = 33.2 bits (74), Expect = 2.3
Identities = 55/231 (23%), Positives = 103/231 (43%), Gaps = 2/231 (0%)
Query: 3 IQLMIESIYTLY--LCNCCHVKDKNILEYQKNITFHINAQFLIFNFDKIEKSSCLTVVKT 176
++++IE ++ Y N +K + + +K I +N Q + + ++E++S + K
Sbjct: 296 LEIVIEILHKEYDQFINSIRLKFEKSQKLEKIIASKLNEQSHLLDSLELEENSSSVIEK- 354
Query: 177 ELKKNYDNEYKIFLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFKV 356
Q +++ LK I + V L+ EDI+K + + E
Sbjct: 355 --------------QDHLISQLKEKIESQSVLINNLEKLKEDIIK------MKQNEKVLT 394
Query: 357 CSFILQNFFDRWKSNRYMNNELEESKEVFDKRIIYLAELAIEKIYLVEKKNGEWYRGPLL 536
Q ++ K N + + + K++ D +I E + + L +K + E Y+
Sbjct: 395 KELETQTKINKLKENNWDSYINDLEKQINDLQIDKSEEFHVIQNQL-DKLDLENYQ---- 449
Query: 537 ILMVVNKINRQQLGSILSCVEKNFLLEHLNLVLQTNESLDIKFNILESCDLQE 695
+ +N ++ Q+L ILS E NF+ + NL+L LD FNIL+ LQE
Sbjct: 450 LKNQLNTLDNQKL--ILSQYESNFIKFNQNLLLH----LDSIFNILQKI-LQE 495
>gi|1361350|pir||A56976 transfer complex protein TrsI - Staphylococcus aureus >gi|310616
(L11998) putative [Staphylococcus aureus] >gi|3676443
(AF051917) putative topoisomerase TraI [Staphylococcus
aureus] >gi|739964|prf||2004267K traI protein
[Staphylococcus sp.]
Length = 700
Score = 33.2 bits (74), Expect = 2.3
Identities = 42/184 (22%), Positives = 91/184 (48%), Gaps = 7/184 (3%)
Query: 168 VKTELKKNYDNEYKIFLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICE--NYLLKG 341
VKTELK +D+E ++ + L +N+I DL + ++ DI + Y +
Sbjct: 240 VKTELKNKFDSEDELH--------------EFLFENDITDLTQKGLVTDIEKEIGYTMPP 285
Query: 342 EMFKVCSFILQNFFDRWKSNRYMNNELEESKEVFDKRIIYLAELAIEKIYLVEKKNGEWY 521
+ + + S + ++ D++K + LE ++ +++K++I + Y+ E + E
Sbjct: 286 KFYDL-SALQEDMNDKYKIS--AKRTLEIAQTLYEKKLITYPR--TDSRYITEDEK-EML 339
Query: 522 RGPLLILMVVNKINRQQLGSILSCVEKNFLLEHLNLVLQTNE--SLDIK---FNILESCD 686
+ L + KIN + S + + + +H +++ N+ +D+K N+ +S
Sbjct: 340 LENIDYLKEITKINLNNELTNNSLINPSKIEDHYAILITGNDFNKVDLKEEEINVYKSI- 398
Query: 687 LQEIHLNFILK 719
LQ + +NF+ K
Sbjct: 399 LQNVAMNFMDK 409
>gi|4049658 (AF063866) ORF MSV045 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 233
Score = 33.2 bits (74), Expect = 2.3
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 9/172 (5%)
Query: 651 MIHLFVTLNLDALIKSFFLHKTKYFLIVVYLSYSLPLKLIEGLDTIHHSFFRQDKXXXXX 472
M H+F + LD + FFL +YFLI+ + L + + L I + FF
Sbjct: 1 MHHIFNFVILDCV---FFLLLARYFLILEFHFLVLAVDCLFDLMYIMYIFFVHLAFPLES 57
Query: 471 XXXXXXXFYQTLLYSLLIHCSYIYYFSIYQRNFVE*NYKP*T----FLLLINNSHIYLSV 304
++++ H I + ++ NFV + + F+ +N H +
Sbjct: 58 IIVHLAFHLESIIVHFAFHLESIIVYFVFHLNFVHFAFHLESIIVHFVFHLNFVHFAFHL 117
Query: 303 YLHRINPIFHYLPTHQQLLLSVSLTYFSVKIFYIH--YHNSFLIL---FLLPSSMMIFLF 139
++ +FH H L + +F + ++H +H LI+ F L + ++ F F
Sbjct: 118 ESIIVHFVFHLNFVHFAFHLESIIVHFVFHLNFVHFAFHLETLIVHLAFSLETIIVHFAF 177
Query: 138 Y 136
+
Sbjct: 178 F 178
>gi|3800881 (AF098799) RanBP7/importin 7 [Homo sapiens]
Length = 1038
Score = 32.8 bits (73), Expect = 3.0
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 192 YDNEYKIFLQKNMLEILKV--TIVDELVDNEILDLFDEDILKDICENYLLKGEMFKVCSF 365
Y ++ Q+N+ E +++ T+V+ V NE L + ++D L + K
Sbjct: 213 YTLPLELINQQNLTEWIEILKTVVNRDVPNETLQVEEDD------RPELPWWKCKKWALH 266
Query: 366 ILQNFFDRWKSNRYMNNELEESKEVFDKRI-IYLAELAIEKIYLVEKKNGEWYRGPLLIL 542
IL F+R+ S ++ E E EVF K + + ++ ++ +Y ++K Y P ++
Sbjct: 267 ILARLFERYGSPGNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQ---YMAPRVLQ 323
Query: 543 MVVNKINR 566
+N IN+
Sbjct: 324 QTLNYINQ 331
>gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL3P7.21 (PFC0960c),
Hypothetical protein, len: 1929 aa [Plasmodium
falciparum]
Length = 1928
Score = 32.8 bits (73), Expect = 3.0
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 51 CHVKDKNILEYQKNITFHINAQFLIFNFDKIEKSSCLTVVKTELKKNYDNEYKIFLQKNM 230
C K+K + + + +IT +IN QF + KI+ +N NEY IFL+K
Sbjct: 1150 CITKEKKLAKME-DITKYINEQF---SLSKIQF------------ENKMNEYVIFLKKKD 1193
Query: 231 LEI--LKVTIVDE----LVDNEILDLFDEDILKDICENYLLKGEMFKVCSFILQNFFDRW 392
EI LK I ++ L ++ IL + +D+ + EN ++ K + +
Sbjct: 1194 SEIYMLKELIKEKEKTILYNDNILKQYKKDVDDILKENIEKIDDIKKKLKTQEEIISQKD 1253
Query: 393 KSNRYMNNELEESKEVFDK------RIIYLAELAIEKIYLVEKKNG-EWYRGPLLI--LM 545
+ + N L+ KE +K ++ Y + IEK ++K N E + L
Sbjct: 1254 RQIETLENNLKIGKEKINKFDNEIQKLQYKINIHIEKETEIKKTNDIEKEKNTKLSNKFD 1313
Query: 546 VVNKINRQQLGSILSCV--EKNFLLEHLNLVLQTNESLDIK 662
++NK N I + + EK E++ L+ +TN++L I+
Sbjct: 1314 IINKENNNLHNKIETLLKNEKEISTENVKLI-ETNKTLYIE 1353
>gi|166165 (J05393) pot. protein HP 83; putative [Bacteriophage T1]
Length = 82
Score = 32.5 bits (72), Expect = 3.9
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 3 IQLMIESIYTLYLCNCCHVKDKNILEYQKNITFHINAQFLIFNFDKIEKSSCLTVVKTEL 182
++L + ++ LY CC + ++N L + D E +S L ++ E+
Sbjct: 8 VKLTEQGLWLLYRATCCEIMERNGLTQD------------VIGCDLWEFTSSLDMLFDEI 55
Query: 183 KKNYDNEYKIFLQKNMLEILKVTIV 257
K Y + +QK++ E+ TIV
Sbjct: 56 KNEYIENWPSIIQKDVEELKADTIV 80
>gi|2650589 (AE001102) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 137
Score = 32.5 bits (72), Expect = 3.9
Identities = 28/92 (30%), Positives = 39/92 (41%)
Query: 207 KIFLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFKVCSFILQNFFD 386
KIFL N L LK + DE+ D C N L K E + + + +L
Sbjct: 2 KIFLDANYLIYLKYSESDEIF--------------DYCVNLLRKIEKYDLVTNMLAIDEV 47
Query: 387 RWKSNRYMNNELEESKEVFDKRIIYLAELAIE 482
W NR EL+E E D+ + +L + IE
Sbjct: 48 IWILNRKYKIELDEVFEYLDRLLSFLRVVPIE 79
>gi|4493993|emb|CAB39052| (AL034559) predicted using hexExon; MAL3P7.42 (PFC1055w),
Hypothetical protein, len: 634 aa [Plasmodium
falciparum]
Length = 633
Score = 32.5 bits (72), Expect = 3.9
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 24/112 (21%)
Query: 84 QKNITFHINAQFLIFNFDKIEKSSCLTVVKTELKKNYDNEYKIFLQK------NMLEILK 245
+KN+ F N FN + +E T K L KNY+N Y + + K M++ K
Sbjct: 414 KKNVLFKNN---YYFNEENMEGFGVFTNEK--LIKNYNNSYNLLINKFNNYCIGMIKDNK 468
Query: 246 VTI------VDELVDNEILDLFDED---------ILKDICENYLLKGEMFKVCSFI---L 371
T+ + E +D+ L++ DE+ I +IC+ LK E+ + ++
Sbjct: 469 YTLDKFYDDLKEKIDDTDLNIIDENKAQQFNLEKIKTNICDEETLKEEITQNEKYVNDHF 528
Query: 372 QNFFDRWKSNRYMNNE 419
F D ++N++ + +
Sbjct: 529 DKFMDDLRANKHTSKK 544
>gi|4049911 (AF063866) ORF MSV227 leucine rich repeat gene family protein,
similar to Amsacta moorei entomopoxvirus Q3 ORF
SW:P28854 [Melanoplus sanguinipes entomopoxvirus]
Length = 306
Score = 32.1 bits (71), Expect = 5.2
Identities = 32/139 (23%), Positives = 71/139 (51%), Gaps = 18/139 (12%)
Query: 402 RYMNNELEESKEVFDKRIIYLAELAIEKIYLVEKKNGEWYRGPLLILMVVNKINRQQLGS 581
+Y+N + + + + +YL L+ K Y+ Y + L++ N++ +++ S
Sbjct: 17 KYLNEKDQMAFVSTCSKTLYLGYLSKYKGYIKWNNQKNVY---IKRLIIRNEMTNEKIDS 73
Query: 582 ILSCVEKNFL------LEHLNLVLQTNESLDIKFNILES------------CDLQEIHLN 707
I E NF+ L+ ++L L N+ ++FN++ + +L+E+H+N
Sbjct: 74 IYGIEEINFVNIQKNFLKDVSLPLSLNK---LEFNVIVNNELNDFTSLKILVNLKELHIN 130
Query: 708 FILKFFMHRGRIEPFFTSGFRSSHKYIRDDFFDFIQS 818
I+ + + P F + YI+ D F +++
Sbjct: 131 SIIDKLQLKNILLPKNLEIFNTDAVYIKKDIFKNLEN 167
>gi|3861178|emb|CAA15078| (AJ235272) ADENYLATE KINASE (adk) [Rickettsia prowazekii]
Length = 213
Score = 32.1 bits (71), Expect = 5.2
Identities = 23/89 (25%), Positives = 42/89 (46%), Gaps = 1/89 (1%)
Query: 204 YKIFLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFKVCSFILQNFF 383
++ F+QK ++I+ + DEL+ +L + I + L+ ++ VC + F
Sbjct: 96 FEAFIQKPQIKIIYFDVADELLIKRVLGRYSCKNCGKIYNIHFLQPKIEHVCDVCSSSVF 155
Query: 384 DRWKSNRYMNNELEESKEVFDKRI-IYLAE 470
D K +++KEV KRI +Y E
Sbjct: 156 DYRK---------DDNKEVIKKRIKVYKTE 176
>gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P6.11 (PFC0760c), Hypothetical
protein, len: 3395 aa [Plasmodium falciparum]
Length = 3394
Score = 31.7 bits (70), Expect = 6.8
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 7/218 (3%)
Query: 60 KDKNILEYQKNITFHINAQFLIFNFDKIEKSSCLTVVKTELKKNYDNEYKIFLQKNMLEI 239
K ++LE KN N + N D S+ +K + +YKI + N+ E
Sbjct: 2191 KKNDMLENYKNELKEKNEEIYKLNNDIDMLSNNCKKLKESIMMM--EKYKIIMNNNIQE- 2247
Query: 240 LKVTIVDEL---VDNEILDLFDEDIL--KDICENYLLKGEMFKVCSFILQNFFDRWKSNR 404
K I++ L +N++ DL + + K I + M C+ IL F + KSN+
Sbjct: 2248 -KDEIIENLKNKYNNKLDDLINNYSVVDKSIEDSNIMSPSCNDILNVFNNLSKSNK 2306
Query: 405 YMNNELEESKEVFDKRIIYLAELAIEKIYLVEKKNGEWYRGPLLILMVVNKINR-QQLGS 581
+ ++ E D +I I V N + + VN IN + +
Sbjct: 2307 KVCTNMDICNENMD---------SISSINNVNNINN------VNNINNVNNINNVNNINN 2351
Query: 582 ILSCVE-KNFLLEHLNLVLQTNESLDIKFNILESCDLQEIHLNFI 713
+ + V+ N+L+ +L L + + IKFNIL+ L +L I
Sbjct: 2352 VKNIVDINNYLVNNLQLNKDNDNIIIIKFNILKLFKLGSCYLYII 2396
>gi|1679867|emb|CAA68058| (X99719) Sty SBLI [Salmonella enterica]
Length = 434
Score = 31.7 bits (70), Expect = 6.8
Identities = 26/112 (23%), Positives = 52/112 (46%)
Query: 153 SCLTVVKTELKKNYDNEYKIFLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICENYL 332
SC V+ K N +EY F KN ++ L+ ++ + + D K+I +
Sbjct: 323 SCYGVIG---KNNISDEYIYFQLKNAVQTLQ-----QMGHGSVFNTITRDTFKNIKVPFC 374
Query: 333 LKGEMFKVCSFILQNFFDRWKSNRYMNNELEESKEVFDKRIIYLAELAIEKI 488
+ E+ S +++N+F + +N Y N L ++ ++I EL++E +
Sbjct: 375 NE-ELTNSYSLLVKNYFSKILNNNYQNIALTNLRDTLLPKLI-SGELSLEDL 424
>gi|1073751|pir||JC2569 tagE protein - Vibrio cholerae (strain 0395) >gi|460955 (U07173)
TagE [Vibrio cholerae] >gi|1100877 (U39068) hypothetical
TagE [Vibrio cholerae]
Length = 302
Score = 31.7 bits (70), Expect = 6.8
Identities = 25/84 (29%), Positives = 38/84 (44%)
Query: 99 FHINAQFLIFNFDKIEKSSCLTVVKTELKKNYDNEYKIFLQKNMLEILKVTIVDELVDNE 278
F + LIFNFD SS L+ +K NEYK F +N K++ ++
Sbjct: 38 FFLAIAMLIFNFDMKLSSSLLSQIK--------NEYKTFFLEN-----KISSINSSSSEL 84
Query: 279 ILDLFDEDILKDICENYLLKGEMF 350
+ DLF + ++ N L + E F
Sbjct: 85 MEDLFSKQERYELAINRLERLESF 108
>gi|3845190 (AE001396) hypothetical protein [Plasmodium falciparum]
Length = 2573
Score = 31.7 bits (70), Expect = 6.8
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 174 TELKKNYDNEYKIFLQKNMLEILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFK 353
T + Y N + L +ILK I+ V + I + FD I KDI EN L+K +
Sbjct: 252 TYIDSTYKNPMYVTLYIFNNDILKDIILQ--VIDIIRNDFDHAIYKDIDENQLIKNLIIL 309
Query: 354 VCSFIL---QNFFDRWKSNRYMNNELEESKEVF--------DKRIIY 461
+ + +FD WK + N+ + V+ D+RI+Y
Sbjct: 310 INHLTTRPSKEWFDYWKRHMPTFNDKKSEYNVYKYLQLQKSDRRILY 356
>gi|2393890 (AF006064) protein kinase homolog [Fowlpox virus]
Length = 285
Score = 31.3 bits (69), Expect = 8.9
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 66 KNILEYQKNITFHINAQFLIFNFDKIEKSSCLTVVKTE-----LKKNYDNEYKIFLQKNM 230
+N L+ +K+I + + +I + + L + T L KN +E +
Sbjct: 108 RNFLDMEKDIDYAKKTRIII------DAAKGLNAMHTSYSTPILHKNLTSESFYMTNNGV 161
Query: 231 LEILKVTIVDELVDNEILDLFDEDILKDICENYLLKGEMFK 353
L+I + + FD D+LKDI NY +K E+++
Sbjct: 162 LKIGSGAYYNIYKRVNFMAYFDYDMLKDIFSNYTIKSEIYR 202
>gi|2128949|pir||H64496 hypothetical protein MJ1577 - Methanococcus jannaschii >gi|1500472
(U67598) M. jannaschii predicted coding region MJ1577
[Methanococcus jannaschii]
Length = 598
Score = 31.3 bits (69), Expect = 8.9
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 339 LLINNSHIYLSVYLHRINP------IFHYLPTHQQLLLSVSLTYFSVKIFYIHYHNSFLI 178
L I N IY + Y I P +F+++ L L Y +VKI I +NS L
Sbjct: 144 LYIRNPGIYTTSYKFVIYPPIETDNVFYHINLK---LADEHLPYKNVKINVIDENNSILD 200
Query: 177 LFLLPSSMMIFLFY 136
LF+ PS+ ++ Y
Sbjct: 201 LFVYPSTFKVYKTY 214
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144023911
Number of Sequences: 369800
Number of extensions: 2924144
Number of successful extensions: 8515
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8502
Number of HSP's gapped (non-prelim): 41
length of query: 280
length of database: 113,023,754
effective HSP length: 54
effective length of query: 225
effective length of database: 93054554
effective search space: 20937274650
effective search space used: 20937274650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)