BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII37R
(700 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P... 38 0.094
gi|4493974|emb|CAB39033| (AL034559) predicted using hexExon; MAL... 34 0.81
gi|557718 (U15406) gag, pol and env protein precursor [Caenorhab... 34 1.4
gi|4493943|emb|CAB38979| (AL034556) predicted using hexExon; MAL... 33 2.4
gi|3845280 (AE001418) hypothetical protein [Plasmodium falciparum] 32 4.1
gi|101992|pir||B40576 cytochrome P450 ALK3-A - yeast (Candida ma... 32 5.4
gi|117182|sp|P16141|CP5D_CANMA CYTOCHROME P450 52A4 (CYPLIIA4) (... 32 5.4
gi|3093352|emb|CAA75488| (Y15189) NADH dehydrogenase subunit 4 [... 31 7.1
gi|2619005 (AF027868) YobG [Bacillus subtilis] >gi|2634284|emb|C... 31 9.2
>gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P6.11 (PFC0760c),
Hypothetical protein, len: 3395 aa [Plasmodium
falciparum]
Length = 3394
Score = 37.5 bits (85), Expect = 0.094
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 581 NSLMDRKNLNVFIFFDLIRNDXHSKH--YKTFVHSFMDSKKSXQMEILTSNDLNKILFLK 408
N ++ KN + ++ND ++++ +K + + KK+ ++ NKIL K
Sbjct: 239 NKILLNKNQELHQTIIQMKNDSYNQNIKFKKDIDVLTEDKKNILIQNKNFTKQNKILIDK 298
Query: 407 YLLSEYMINFIKSENXXXXXDLIENXLYMDVEEIIKIKAINSILRSLFVLKRXDLFMEYY 228
YL E +I +K N ++I + +E + K ++N + + VL + + E +
Sbjct: 299 YLRQEKIIYKLKKHN--EEQEIIIKECHKKIEFVNK-NSVNHLNKVRDVLNKSLIKSEEH 355
Query: 227 VNEETLLKRETEEYRI-YN 174
V T LK+E + +I YN
Sbjct: 356 VKLYTNLKKENDSLKIEYN 374
>gi|4493974|emb|CAB39033| (AL034559) predicted using hexExon; MAL3P7.15 (PFC0930c),
Hypothetical protein, len: 1845 aa [Plasmodium
falciparum]
Length = 1844
Score = 34.4 bits (77), Expect = 0.81
Identities = 39/163 (23%), Positives = 79/163 (47%), Gaps = 19/163 (11%)
Query: 533 LIRNDXHSKHY-KTFVHSFMDSKKSXQME--ILTSNDLNKILFLKYLLSEYMINFIKSEN 363
+I+N + H K + K Q+ +L+ N++N L+ +L S N++ +N
Sbjct: 1641 IIKNKSTNNHIIKNQKEQKEERNKKIQLRKLLLSGNNINSSLYSSFLSSFCTCNYVVVKN 1700
Query: 362 XXXXXDLIEN-XLYMDVEEIIKIKAINSILRSLFVLKRXDLFMEY---YVNEETLL---- 207
+ I+N LY+ + + IK I + L + KR ++ EY N++ +L
Sbjct: 1701 LDFSMNKIDNDGLYITYKYLQHIKKIQE-KKKLAMFKRNQIYKEYEKLTPNQKEILHMQK 1759
Query: 206 ---KRETEEYRIY-----NXLYDFLLCKEIKGSIRNFXXXIYKLKEENEYNLFSKEEFVE 51
++ + IY N L + + +I + NF YK K+ ++ + + +
Sbjct: 1760 KIKNKKNKLCNIYINLDHNNLKNSVYINKINKLLNNFPIQNYKKKKFKKHTNHNNQHVIL 1819
Query: 50 SL 45
S+
Sbjct: 1820 SM 1821
>gi|557718 (U15406) gag, pol and env protein precursor [Caenorhabditis
elegans]
Length = 2272
Score = 33.6 bits (75), Expect = 1.4
Identities = 22/96 (22%), Positives = 43/96 (43%)
Query: 476 DSKKSXQMEILTSNDLNKILFLKYLLSEYMINFIKSENXXXXXDLIENXLYMDVEEIIKI 297
D++ + L +N+L+ + L+ ++ EY + +K E + + M EEI++
Sbjct: 144 DAETQKMKQFLDTNELHNVSDLEEIIKEYSVLKMKEEKEKQCLQMASDSWAMMREEIMEK 203
Query: 296 KAINSILRSLFVLKRXDLFMEYYVNEETLLKRETEE 189
+ N L K +L + + ET LK + E
Sbjct: 204 RETNRDLNRQLKEKSEELMQKSQILVETTLKLKAVE 239
>gi|4493943|emb|CAB38979| (AL034556) predicted using hexExon; MAL3P5.15 (PFC0645w),
Hypothetical protein, len: 348 aa [Plasmodium
falciparum]
Length = 347
Score = 32.8 bits (73), Expect = 2.4
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 47 SFLQI-LLLKINYIHFLLLIYKYXXENFLCYL*FLYKVKNHIKXYISY 187
SFL+I +L+KI YI+ + IYKY +CY FL++ I+ Y
Sbjct: 202 SFLKIYILIKIKYIYIYIYIYKY-----ICYTLFLFQGGKQIRGKEKY 244
>gi|3845280 (AE001418) hypothetical protein [Plasmodium falciparum]
Length = 1817
Score = 32.1 bits (71), Expect = 4.1
Identities = 35/140 (25%), Positives = 60/140 (42%)
Query: 626 FLHSIYXYTKEDKIXNSLMDRKNLNVFIFFDLIRNDXHSKHYKTFVHSFMDSKKSXQMEI 447
FL++ TK KI + L +N I N H H +T++H K+ I
Sbjct: 1327 FLNNYLDNTKHFKINHFLSSLFYINKII----PPNMKHMYHLETYLHKNHKIYKNKFFYI 1382
Query: 446 LTSNDLNKILFLKYLLSEYMINFIKSENXXXXXDLIENXLYMDVEEIIKIKAINSILRSL 267
DL K +L ++ Y+ ++IKS N + + +Y + + K ++I
Sbjct: 1383 YNGLDLLKKSYLVHIKKLYINSYIKSYNNKKKNNNVNGDVYNNF--MYKYNIYDNI--DY 1438
Query: 266 FVLKRXDLFMEYYVNEETLL 207
+K+ +LF Y N +LL
Sbjct: 1439 IFIKKKNLFC--YTNHLSLL 1456
>gi|101992|pir||B40576 cytochrome P450 ALK3-A - yeast (Candida maltosa)
>gi|732623|emb|CAA39367| (X55881) n-alkane inducible
cytochrome P-450 [Candida maltosa]
Length = 538
Score = 31.7 bits (70), Expect = 5.4
Identities = 21/78 (26%), Positives = 43/78 (54%), Gaps = 9/78 (11%)
Query: 626 FLHSIYXYTKE-----DKIXNSLMDRKNLNV----FIFFDLIRNDXHSKHYKTFVHSFMD 474
FL+ + T++ D++ N L+ ++ F+FF+L RN + K +H+
Sbjct: 310 FLYELAKQTRDPKVLRDQLLNILVAGRDTTAGLLSFLFFELSRNPTVFEKLKEEIHNRFG 369
Query: 473 SKKSXQMEILTSNDLNKILFLKYLLSE 393
+K+ ++E +T L +LK ++E
Sbjct: 370 AKEDARVEEITFESLKLCEYLKACVNE 396
>gi|117182|sp|P16141|CP5D_CANMA CYTOCHROME P450 52A4 (CYPLIIA4) (ALKANE-INDUCIBLE P450-ALK3-A)
(P450-CM2) >gi|65691|pir||O4CKA4 cytochrome P450 52A4 -
yeast (Candida maltosa) >gi|2610|emb|CAA36198| (X51932)
cytochrome P450cm2 (AA 1-538) [Candida maltosa]
Length = 538
Score = 31.7 bits (70), Expect = 5.4
Identities = 21/78 (26%), Positives = 43/78 (54%), Gaps = 9/78 (11%)
Query: 626 FLHSIYXYTKE-----DKIXNSLMDRKNLNV----FIFFDLIRNDXHSKHYKTFVHSFMD 474
FL+ + T++ D++ N L+ ++ F+FF+L RN + K +H+
Sbjct: 310 FLYELAKQTRDPKVLRDQLLNILVAGRDTTAGLLSFLFFELSRNPTVFEKLKEEIHNRFG 369
Query: 473 SKKSXQMEILTSNDLNKILFLKYLLSE 393
+K+ ++E +T L +LK ++E
Sbjct: 370 AKEDARVEEITFESLKLCEYLKACVNE 396
>gi|3093352|emb|CAA75488| (Y15189) NADH dehydrogenase subunit 4 [Myxine glutinosa]
Length = 458
Score = 31.3 bits (69), Expect = 7.1
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 11/50 (22%)
Query: 34 YIXSKLSTNSSF----ENKLYSFSSFNL*IXXXKFLMLPLISLQSKK-------SYKXLY 180
+I + LS NSSF +NKL+ + + + MLPL++L S+ SY+ LY
Sbjct: 39 FIFTPLSFNSSFLMHLQNKLFGYDMISAPLVFLSLWMLPLMALASQHHMKKSPLSYQLLY 98
Query: 181 I 183
I
Sbjct: 99 I 99
>gi|2619005 (AF027868) YobG [Bacillus subtilis] >gi|2634284|emb|CAB13783|
(Z99114) response regulator aspartate phosphatase
[Bacillus subtilis]
Length = 371
Score = 30.9 bits (68), Expect = 9.2
Identities = 25/84 (29%), Positives = 37/84 (43%), Gaps = 4/84 (4%)
Query: 335 NXLYMDVEEIIKI----KAINSILRSLFVLKRXDLFMEYYVNEETLLKRETEEYRIYNXL 168
N L+M ++E+ KI KAIN Y +E L+ E + Y +
Sbjct: 255 NSLFMMIKELFKIDEKMKAINF----------------YNKAQERLILMENKVYEAKISI 298
Query: 167 YDFLLCKEIKGSIRNFXXXIYKLKEENE 84
L C E+K + N I LK++NE
Sbjct: 299 LYNLYCGELKNNFNNCISNIEFLKQQNE 326
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78424248
Number of Sequences: 368476
Number of extensions: 1115019
Number of successful extensions: 2569
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2566
Number of HSP's gapped (non-prelim): 12
length of query: 233
length of database: 112640273
effective HSP length: 53
effective length of query: 179
effective length of database: 93111045
effective search space: 16666877055
effective search space used: 16666877055
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)