BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII35R
(754 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3877655|emb|CAA96657| (Z72511) possible zinc finger protein; ... 80 1e-14
gi|3650401|emb|CAA21073| (AL031739) zinc finger protein [Schizos... 73 2e-12
gi|4240031|dbj|BAA74802| (AB018422) DNA binding zinc finger prot... 58 6e-08
gi|1086225|pir||S49446 RING-finger protein (C-terminal) - Lotus ... 54 9e-07
gi|4539257|emb|CAB39846| (AL049495) Zinc finger, C3HC4 type, rin... 53 2e-06
gi|2262176 (AC002329) putative RING zinc-finger protein [Arabido... 52 6e-06
gi|1707142 (U80836) contains similarity to a C3HC4-class zinc fi... 52 6e-06
gi|2979531 (AC004449) R33683_3 [Homo sapiens] 51 8e-06
gi|3395787 (AF064801) multiple membrane spanning receptor TRC8 [... 51 1e-05
gi|2132820|pir||S66695 probable membrane protein YOL013c - yeast... 50 2e-05
gi|4510422|gb|AAD21508| (AC006929) putative zinc-finger protein ... 50 2e-05
gi|4538979|emb|CAB39767| (AL049487) putative protein [Arabidopsi... 49 3e-05
gi|1076498|pir||S49445 zinc-finger protein (C-terminal) - soybea... 49 3e-05
gi|4538980|emb|CAB39768| (AL049487) putative protein [Arabidopsi... 48 5e-05
gi|2623297 (AC002409) unknown protein [Arabidopsis thaliana] >gi... 48 5e-05
gi|3451070|emb|CAA20466| (AL031326) putative protein [Arabidopsi... 48 5e-05
gi|3341678 (AC003672) putative zinc finger protein [Arabidopsis ... 48 5e-05
gi|4185131 (AC005724) putative zinc finger protein [Arabidopsis ... 47 1e-04
gi|3790581 (AF079179) RING-H2 finger protein RHB1a [Arabidopsis ... 47 1e-04
gi|3582320 (AC005496) hypothetical protein [Arabidopsis thaliana] 47 1e-04
gi|4204263 (AC005223) 40409 [Arabidopsis thaliana] 47 1e-04
gi|1363737|pir||S59393 probable membrane protein YLR247c - yeast... 47 2e-04
gi|2982466|emb|CAA18230| (AL022223) putative protein [Arabidopsi... 47 2e-04
gi|3880441|emb|CAB04890| (Z82062) similar to Zinc finger, C3HC4 ... 46 2e-04
gi|2496947|sp|Q09298|YQO9_CAEEL HYPOTHETICAL 141.2 KD PROTEIN EE... 46 3e-04
gi|3790575 (AF078825) RING-H2 finger protein RHA3b [Arabidopsis ... 46 3e-04
gi|4493935|emb|CAB38971| (AL034556) predicted using hexExon; MAL... 46 4e-04
gi|3790591 (AF079184) RING-H2 finger protein RHX1a [Arabidopsis ... 46 4e-04
gi|4454011|emb|CAA23064| (AL035396) putative protein [Arabidopsi... 45 5e-04
gi|3822225 (AF079183) RING-H2 finger protein RHG1a [Arabidopsis ... 45 6e-04
gi|3642014|emb|CAA20925| (AL031620) similar to Zinc finger, C3HC... 45 8e-04
gi|2501730|sp|Q00940|PEXA_PICAN PEROXISOME ASSEMBLY PROTEIN PER8... 45 8e-04
gi|3877196|emb|CAA93773| (Z69903) similar to Zinc finger, C3HC4 ... 44 0.001
gi|4335719|gb|AAD17397| (AC006248) putative RING-H2 finger prote... 44 0.001
gi|731596|sp|P38748|YHB0_YEAST HYPOTHETICAL 67.5 KD PROTEIN IN P... 44 0.001
gi|3327164|dbj|BAA31650| (AB014575) KIAA0675 protein [Homo sapiens] 44 0.001
gi|4049802 (AF063866) ORF MSV197 tryptophan repeat gene family p... 44 0.001
gi|2911058|emb|CAA17568| (AL021961) putative protein [Arabidopsi... 44 0.001
gi|3461824 (AC004138) hypothetical protein [Arabidopsis thaliana] 43 0.002
gi|2529671 (AC002535) hypothetical protein [Arabidopsis thaliana] 43 0.002
gi|2662157|dbj|BAA23710| (AB007898) KIAA0438 [Homo sapiens] 43 0.002
gi|971275|dbj|BAA06979| (D32249) neurodegeneration associated pr... 43 0.002
gi|1519680 (U67953) contains similarity to C3HC4-class zinc fing... 43 0.002
gi|2894379|emb|CAA74911| (Y14573) ring finger protein [Hordeum v... 43 0.002
gi|3413712 (AC004747) hypothetical protein [Arabidopsis thaliana] 43 0.002
gi|2894600|emb|CAA17134| (AL021889) putative protein [Arabidopsi... 43 0.002
gi|2828790 (U06944) PRAJA1 [Mus musculus] 43 0.002
gi|3790593 (AF079185) RING-H2 finger protein RHY1a [Arabidopsis ... 43 0.002
gi|4580469|gb|AAD24393|AC006081_15 (AC006081) putative zinc fing... 43 0.002
gi|3377817 (AF076275) contains similarity to C3HC4-type zinc fin... 43 0.003
gi|4337011|gb|AAD18035| (AF119572) zinc-binding peroxisomal inte... 43 0.003
gi|2132275|pir||S69076 hypothetical protein YPR093c - yeast (Sac... 43 0.003
gi|3075382 (AC002505) putative peroxisome assembly protein PER8 ... 43 0.003
gi|2565009|gb|AAB81879|AAB81879 (AC002983) putative zinc finger ... 43 0.003
gi|4490758|emb|CAB38920| (AL035708) putative protein [Arabidopsi... 43 0.003
gi|4049796 (AF063866) ORF MSV205 tryptophan repeat gene family p... 43 0.003
gi|3873857|emb|CAA84635| (Z35595) possesses similarity with C3HC... 42 0.004
gi|4049885 (AF063866) ORF MSV027 tryptophan repeat gene family p... 42 0.004
gi|1754692 (U81154) contains a deletion of 399 base pairs as com... 42 0.005
gi|2606010 (AF030027) 63 [Equine herpesvirus 4] 42 0.005
gi|124137|sp|P28990|ICP0_HSVEB TRANS-ACTING TRANSCRIPTIONAL PROT... 42 0.005
gi|3790587 (AF079182) RING-H2 finger protein RHF2a [Arabidopsis ... 42 0.005
gi|3927839 (AC005727) hypothetical protein [Arabidopsis thaliana] 42 0.005
gi|515101|pdb|1CHC| Equine Herpes Virus-1 (C3hc4, Or Ring Doma... 42 0.005
gi|2894601|emb|CAA17135| (AL021889) putative protein [Arabidopsi... 41 0.007
gi|2502079 (AF022391) immediate early protein; ICP0 [Feline herp... 41 0.007
gi|3128178 (AC004521) hypothetical protein [Arabidopsis thaliana] 41 0.007
gi|4512649|gb|AAD21704| (AC007048) hypothetical protein [Arabido... 41 0.009
gi|3219947|sp|O13747|YDRD_SCHPO HYPOTHETICAL 61.8 KD PROTEIN C16... 41 0.009
gi|4454482|gb|AAD20929| (AC006234) hypothetical protein [Arabido... 41 0.009
gi|3327106|dbj|BAA31621| (AB014546) KIAA0646 protein [Homo sapie... 41 0.009
gi|3790554 (AF078683) RING-H2 finger protein RHA1a [Arabidopsis ... 41 0.009
gi|3249088 (AC004473) Contains similarity to goliath protein gb|... 41 0.009
gi|3790569 (AF078822) RING-H2 finger protein RHA2a [Arabidopsis ... 41 0.012
gi|3252872 (AF035620) BRCA1-associated protein 2 [Homo sapiens] 41 0.012
gi|3808337|gb|AAC69348| (AF101318) No definition line found [Cae... 41 0.012
gi|2829745|sp|P90859|YUES_CAEEL HYPOTHETICAL 64.7 KD PROTEIN F26... 41 0.012
gi|102505|pir||S15788 intermediate early protein IE110 homolog -... 41 0.012
gi|418354|sp|P30631|YOUD_CAEEL HYPOTHETICAL 18.8 KD PROTEIN ZK63... 41 0.012
gi|124139|sp|P09309|ICP0_VZVD TRANS-ACTING TRANSCRIPTIONAL PROTE... 41 0.012
gi|3873408 (L76926) putative zinc finger protein [Arabidopsis th... 41 0.012
gi|4008555|emb|CAA22476| (AL034490) putative PHD-type zinc finge... 41 0.012
gi|134202|sp|P22470|SAN1_YEAST SAN1 PROTEIN >gi|83516|pir||S0580... 40 0.016
gi|3645985|emb|CAA20888| (AL031581) 1-evidence=predicted by cont... 40 0.016
gi|3914299|sp|O60683|PEXA_HUMAN PEROXISOME ASSEMBLY PROTEIN PEX1... 40 0.016
gi|133250|sp|P19474|RO52_HUMAN 52 KD RO PROTEIN (SJOGREN SYNDROM... 40 0.016
gi|2746335 (AF037205) RING zinc finger protein [Mus musculus] 40 0.016
gi|4493956|emb|CAB11123| (Z98551) predicted using hexExon; MAL3P... 40 0.016
gi|4105798 (AF049930) PGP237-11 [Petunia x hybrida] 40 0.020
gi|3308984|dbj|BAA31563| (AB008516) mtprd [Mus musculus] 40 0.020
gi|266331|sp|P29836|ICP0_HSVBK TRANS-ACTING TRANSCRIPTIONAL PROT... 40 0.020
gi|124136|sp|P29128|ICP0_HSVBJ TRANS-ACTING TRANSCRIPTIONAL PROT... 40 0.020
gi|1077251|pir||S52511 hypothetical protein YDL008w - yeast (Sac... 39 0.027
gi|1903359|gb|AAB70441| (AC000104) F19P19.21 [Arabidopsis thaliana] 39 0.027
gi|2605922 (AF029693) ring finger protein [Brevicoryne brassicae] 39 0.027
gi|3875262|emb|CAA99823| (Z75533) similar to Zinc finger, C3HC4 ... 39 0.027
gi|283833|pir||A43906 nuclear phosphoprotein xnf7 - African claw... 39 0.027
gi|3063710|emb|CAA18601| (AL022537) putative protein [Arabidopsi... 39 0.027
gi|3928165|emb|CAA09084| (AJ010317) TRAF interacting protein [Fu... 39 0.027
gi|466326 (L26342) N1R [Rabbit fibroma virus] 39 0.027
gi|3881649|emb|CAA94801| (Z70757) Similarity to yeast hypothetic... 39 0.035
gi|1321818|emb|CAA64725| (X95455) RING zinc finger protein [Gall... 39 0.035
gi|2746333 (AF037204) RING zinc finger protein [Homo sapiens] >g... 39 0.035
gi|2266904|gb|AAC24651| (AE001274) L1231.6 [Leishmania major] 39 0.035
gi|3808336|gb|AAC69347| (AF101318) No definition line found [Cae... 39 0.035
gi|4371286|gb|AAD18144| (AC006260) putative C-terminal RING-fing... 39 0.035
gi|3790567 (AF078821) RING-H2 finger protein RHA1b [Arabidopsis ... 39 0.035
gi|1945615|dbj|BAA19739| (D76444) hkf-1 [Homo sapiens] 39 0.046
gi|2911873 (AF047662) contains similarity to C3HC4-type zinc fin... 39 0.046
gi|3694627 (AC005764) R31343_1 [Homo sapiens] 39 0.046
gi|3033395 (AC004238) putative zinc-finger protein [Arabidopsis ... 39 0.046
gi|2058263|dbj|BAA19795| (D76445) mkf-1 [Mus musculus] 39 0.046
gi|2894297|emb|CAA17038| (AL021837) hypothetical protein [Schizo... 39 0.046
gi|4521317|dbj|BAA34912| (AB012161) KF-1 [Mus musculus] 39 0.046
gi|4335724|gb|AAD17402| (AC006248) putative RING-H2 finger prote... 39 0.046
gi|2257522|dbj|BAA21416| (AB004537) PAS4 Protein [Schizosaccharo... 39 0.046
gi|3790579 (AF079178) RING-H2 finger protein RHA4a [Arabidopsis ... 38 0.060
gi|2039306 (U77844) mTRIP [Mus musculus] 38 0.060
gi|3790585 (AF079181) RING-H2 finger protein RHF1a [Arabidopsis ... 38 0.060
gi|2662364|dbj|BAA23666| (D83327) DCRR1 [Homo sapiens] 38 0.060
gi|1730008|sp|P53804|TTC3_HUMAN TETRATRICOPEPTIDE REPEAT DOMAIN ... 38 0.060
gi|2244955|emb|CAB10376| (Z97340) hypothetical protein [Arabidop... 38 0.060
gi|1632764|dbj|BAA12302| (D84295) possible protein TPRDII [Homo ... 38 0.060
gi|1632766|dbj|BAA12303| (D84296) TPRDIII [Homo sapiens] 38 0.060
gi|1399466 (U48717) zinc finger protein [Cryptosporidium parvum] 38 0.060
gi|2342720 (AC002341) hypothetical protein [Arabidopsis thaliana] 38 0.079
gi|4185133 (AC005724) putative zinc finger protein [Arabidopsis ... 38 0.079
gi|2501732|sp|Q05568|PEXA_YEAST PEROXISOME ASSEMBLY PROTEIN PEX1... 38 0.079
gi|3928094 (AC005770) putative zinc finger protein [Arabidopsis ... 38 0.079
gi|3805850|emb|CAA21470| (AL031986) putative protein [Arabidopsi... 38 0.079
gi|4467120|emb|CAB37554| (AL035538) putative protein [Arabidopsi... 38 0.079
gi|93140|pir||A40505 early protein EP0 - suid herpesvirus 1 (str... 38 0.079
gi|2388937|emb|CAB11672| (Z98977) hypothetical protein [Schizosa... 38 0.079
gi|3790571 (AF078823) RING-H2 finger protein RHA2b [Arabidopsis ... 38 0.10
gi|2213613 (AC000103) F21J9.7 [Arabidopsis thaliana] 38 0.10
gi|4567307|gb|AAD23718|AC005956_7 (AC005956) putative zinc finge... 38 0.10
gi|4510378|gb|AAD21466| (AC007017) hypothetical protein [Arabido... 38 0.10
gi|1311667|bbs|175635 (S80988) nuclear factor 7=dorsal-ventral b... 38 0.10
gi|1770499|emb|CAA69165| (Y07828) put. ring protein [Homo sapiens] 38 0.10
gi|2104444|emb|CAB08767| (Z95396) zinc finger protein [Schizosac... 38 0.10
gi|4262223|gb|AAD14516| (AC006200) RING-H2 finger protein RHA2b ... 38 0.10
gi|338490 (M62800) 52-kD SS-A/Ro autoantigen [Homo sapiens] >gi|... 37 0.14
gi|3236261 (AC004684) putative zinc finger protein [Arabidopsis ... 37 0.14
gi|3608146 (AC005314) unknown protein [Arabidopsis thaliana] 37 0.14
gi|1841551 (U89336) unknown [Homo sapiens] 37 0.14
gi|2213626 (AC000103) F21J9.18 [Arabidopsis thaliana] 37 0.14
gi|2642154 (AC003000) unknown protein [Arabidopsis thaliana] >gi... 37 0.14
gi|2435518 (AF024504) contains similarity to C3HC4-type zinc fin... 37 0.14
gi|4539459|emb|CAB39939| (AL049500) putative protein [Arabidopsi... 37 0.14
gi|124138|sp|P29129|ICP0_PRVIF TRANS-ACTING TRANSCRIPTIONAL PROT... 37 0.14
gi|1707068 (U80449) contains similarity to a C3HC4 zinc finger (... 37 0.18
gi|4049767 (AF063866) ORF MSV251 hypothetical protein containing... 37 0.18
gi|2501735|sp|Q09463|YQ57_CAEEL HYPOTHETICAL 24.9 KD PROTEIN C16... 37 0.18
gi|2501720|sp|Q95153|BRC1_CANFA BREAST CANCER TYPE 1 SUSCEPTIBIL... 37 0.18
gi|2673908 (AC002561) hypothetical protein [Arabidopsis thaliana] 37 0.18
gi|3133097|emb|CAA19023| (AL023554) zinc finger protein [Schizos... 37 0.18
gi|549667|sp|P36096|YKD4_YEAST HYPOTHETICAL 87.9 KD PROTEIN PREC... 36 0.23
gi|2564951 (AF030001) unknown [Mus musculus] 36 0.23
gi|868148 (U22375) ORF2 [Feldmannia sp. virus] 36 0.23
gi|3329611 (AF078783) contains similarity to C3HC4-type zinc fin... 36 0.23
gi|2695691|gb|AAC36493| (AF036760) BRCA1 [Rattus norvegicus] 36 0.30
gi|1001959 (U19107) ZNF127 [Homo sapiens] 36 0.30
gi|1498737 (U64805) Brca1-delta11b [Homo sapiens] 36 0.30
gi|1699382|bbs|178646 (S82500) Brca1 [rats, WKY, testis, Peptide... 36 0.30
gi|3033394 (AC004238) putative zinc-finger protein [Arabidopsis ... 36 0.30
gi|728984|sp|P38398|BRC1_HUMAN BREAST CANCER TYPE 1 SUSCEPTIBILI... 36 0.30
gi|627392|pir||A54652 breast/ovarian cancer susceptibility prote... 36 0.30
gi|969172 (U32446) breast/ovarian cancer susceptibility protein ... 36 0.30
gi|2137173|pir||I49350 breast/ovarian cancer susceptibility homo... 36 0.30
gi|2507557|sp|P48754|BRC1_MOUSE BREAST CANCER TYPE 1 SUSCEPTIBIL... 36 0.30
gi|1049263 (U36475) breast and ovarian cancer susceptibility pro... 36 0.30
gi|4097808 (U68174) Brca1 [Mus musculus] 36 0.30
gi|586501|sp|P38239|YBR2_YEAST HYPOTHETICAL 13.2 KD PROTEIN IN O... 36 0.40
gi|1843401|dbj|BAA19122| (AB000468) zinc finger protein [Homo sa... 36 0.40
gi|340026 (M16029) tyrosine kinase [Homo sapiens] 36 0.40
gi|132517|sp|P14373|RFP_HUMAN ZINC-FINGER PROTEIN RFP (RET FINGE... 36 0.40
gi|675507 (L26987) par-2 [Caenorhabditis elegans] 36 0.40
gi|2132017|pir||S66830 hypothetical protein YOL133w - yeast (Sac... 36 0.40
gi|322492|pir||A44272 photomorphogenesis repressor COP1 - Arabid... 36 0.40
gi|4566495|gb|AAD23379|AF098300_1 (AF098300) topoisomerase I-bin... 36 0.40
gi|462193|sp|Q06003|GOLI_DROME GOLIATH PROTEIN (G1 PROTEIN) >gi|... 36 0.40
gi|3342562 (AF077599) hypothetical SBBI03 protein [Homo sapiens] 36 0.40
gi|3510468 (AF022081) small nuclear RING finger protein [Rattus ... 36 0.40
gi|1169012|sp|P43254|COP1_ARATH COP1 REGULATORY PROTEIN (FUSCA P... 36 0.40
gi|2702280 (AC003033) photomorphogenesis repressor COP1 [Arabido... 36 0.40
gi|2736517 (AF039052) contains similarity to helicases [Caenorha... 36 0.40
gi|3876716|emb|CAA86328| (Z46242) similar to Zinc finger, C3HC4 ... 35 0.52
gi|483212|pir||D48560 immediate-early protein IE110 - human herp... 35 0.52
gi|124134|sp|P08393|ICP0_HSV11 TRANS-ACTING TRANSCRIPTIONAL PROT... 35 0.52
gi|1655930 (U66564) RUSH-1alpha [Oryctolagus cuniculus] 35 0.52
gi|3193334 (AF069299) contains similarity to Lotus japonicus RIN... 35 0.52
gi|4337205|gb|AAD18119| (AC006403) hypothetical protein [Arabido... 35 0.52
gi|3850134|emb|CAA21935| (AL033391) zinc finger protein [Candida... 35 0.52
gi|3152606 (AC004482) putative ring zinc finger protein [Arabido... 35 0.52
gi|3928084 (AC005770) retrotransposon-like protein [Arabidopsis ... 35 0.52
gi|480989|pir||S37583 finger protein rfp - mouse (fragment) >gi|... 35 0.52
gi|2131424|pir||S61199 hypothetical protein YDR313c - yeast (Sac... 35 0.52
gi|731505|sp|P40072|YEU6_YEAST HYPOTHETICAL 30.8 KD PROTEIN IN S... 35 0.52
gi|1655932 (U66565) RUSH-1beta [Oryctolagus cuniculus] 35 0.52
gi|3513737 (AF080118) contains similarity to C3HC4-type zinc fin... 35 0.52
gi|3764009|emb|CAA15602| (AL008970) predicted using hexExon; MAL... 35 0.52
gi|2501724|sp|Q62158|RFP_MOUSE ZINC-FINGER PROTEIN RFP (RET FING... 35 0.52
gi|115855|sp|P22681|CBL_HUMAN PROTO-ONCOGENE C-CBL >gi|280867|pi... 35 0.68
gi|3702333 (AC005397) hypothetical protein [Arabidopsis thaliana] 35 0.68
gi|280641|pir||A28009 43K postsynaptic membrane protein - Pacifi... 35 0.68
gi|1658307|emb|CAA86572| (Z46606) helicase-like transcription fa... 34 0.90
gi|4090943 (AF029984) COP1 homolog [Lycopersicon esculentum] 34 0.90
gi|1946989 (AF000193) short region of weak similarity to rat SH3... 34 0.90
gi|1082441|pir||A56095 HIP116 protein - human >gi|531196 (L34673... 34 0.90
gi|1082438|pir||S49618 helicase-like transcription factor - huma... 34 0.90
gi|1730767|sp|P53924|YNL6_YEAST HYPOTHETICAL 57.6 KD PROTEIN IN ... 34 0.90
gi|4567308|gb|AAD23719|AC005956_8 (AC005956) putative zinc finge... 34 0.90
gi|4204282 (AC004146) Hypothetical protein [Arabidopsis thaliana] 34 0.90
gi|2781353 (AC003113) F24O1.9 [Arabidopsis thaliana] 34 0.90
gi|2997696 (AF053958) unknown [Drosophila heteroneura] 34 0.90
gi|3123206|sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN >gi|2832850|e... 34 1.2
gi|862409 (U26711) cbl-b truncated form 1 [Homo sapiens] 34 1.2
gi|862411 (U26712) cbl-b truncated form 2 [Homo sapiens] 34 1.2
gi|2132852|pir||S66835 probable membrane protein YOL138c - yeast... 34 1.2
gi|1628438|emb|CAA64732| (X95465) ORF [Saccharomyces cerevisiae] 34 1.2
gi|2119386|pir||I56333 apolipoprotein B - rat (fragment) >gi|623... 34 1.2
gi|862407 (U26710) cbl-b [Homo sapiens] 34 1.2
gi|542812|pir||A49656 estrogen-responsive finger protein, efp (R... 34 1.5
gi|131780|sp|P10862|RA18_YEAST DNA REPAIR PROTEIN RAD18 >gi|7325... 34 1.5
gi|2496896|sp|Q09251|YQ55_CAEEL HYPOTHETICAL 47.6 KD PROTEIN C16... 34 1.5
gi|3560212|emb|CAA20765| (AL031536) hypothetical zinc finger pro... 34 1.5
gi|2136310|pir||A57041 transcription regulator Staf-50 - human >... 34 1.5
gi|2104419|emb|CAB08748| (Z95395) Zinc finger, C3HC4 type [Schiz... 34 1.5
gi|1001957 (U19106) ZNF127 [Mus musculus] 34 1.5
gi|1947117 (AF000261) weakly similar to myosin heavy chain A [Ca... 34 1.5
gi|1255835 (U53337) similar to Tektin A1 - sea urchin (PIR:A4617... 33 2.0
gi|2145348|emb|CAA70794| (Y09598) hypothetical protein [avian ad... 33 2.0
gi|731703|sp|P38823|YHR5_YEAST HYPOTHETICAL 46.1 KD PROTEIN IN E... 33 2.0
gi|1363837|pir||S59296 probable finger protein YOL054w - yeast (... 33 2.0
gi|2213555|emb|CAB09767| (Z97052) hypothetical protein [Schizosa... 33 2.0
gi|3121867|sp|P93471|COP1_PEA COP1 REGULATORY PROTEIN >gi|169490... 33 2.6
gi|1079063|pir||S54252 deep orange protein - fruit fly (Drosophi... 33 2.6
gi|639775 (L36930) glycoprotein precursor [Bayou virus] 33 2.6
gi|2244792|emb|CAB10215| (Z97336) ankyrin homolog [Arabidopsis t... 33 2.6
gi|2039304 (U77845) hTRIP [Homo sapiens] 33 2.6
gi|4008410|emb|CAB07413| (Z92839) predicted using Genefinder; si... 33 2.6
gi|2499962|sp|Q13702|PS43_HUMAN 43 KD POSTSYNAPTIC PROTEIN (ACET... 33 2.6
gi|2257844 (AF000138) rapsyn [Gallus gallus] 33 2.6
gi|3024571|sp|Q62191|RO52_MOUSE 52 KD RO PROTEIN (SJOGREN SYNDRO... 32 3.5
gi|3116149|emb|CAA18897| (AL023290) putative serine-rich zinc-fi... 32 3.5
gi|3880871|emb|CAA21635| (AL032639) similar to Zinc finger, C3HC... 32 3.5
gi|3560235|emb|CAA20703| (AL031530) hypothetical zinc finger pro... 32 3.5
gi|1869881|emb|CAB06705| (Z86099) RL2 [human herpesvirus 2] 32 3.5
gi|124135|sp|P28284|ICP0_HSV2H TRANS-ACTING TRANSCRIPTIONAL PROT... 32 3.5
gi|1353157|sp|Q09600|YRM2_CAEEL HYPOTHETICAL 108.5 KD PROTEIN R0... 32 3.5
gi|91257|pir||A30891 regulatory protein rpt-1 - mouse 32 4.5
gi|3882149|dbj|BAA34434| (AB018257) KIAA0714 protein [Homo sapiens] 32 4.5
gi|321074|pir||S28418 probable zinc-binding protein - Iberian ri... 32 4.5
gi|584704|sp|Q02084|A33_PLEWA ZINC-BINDING PROTEIN A33 >gi|21386... 32 4.5
gi|133482|sp|P15533|RPT1_MOUSE DOWN REGULATORY PROTEIN OF INTERL... 32 4.5
gi|131129|sp|P09108|PS43_TORCA 43 KD POSTSYNAPTIC PROTEIN (ACETY... 32 4.5
gi|280546|pir||S28275 hypothetical protein F54G8.4 - Caenorhabdi... 32 4.5
gi|563127 (U09825) acid finger protein [Homo sapiens] >gi|450800... 32 4.5
gi|465914|sp|Q03601|YMB4_CAEEL HYPOTHETICAL 104.4 KD PROTEIN F54... 32 4.5
gi|3256109|emb|CAA19658| (AL024454) 1-evidence=predicted by moti... 32 4.5
gi|3877606|emb|CAA79562| (Z19155) similarity to zinc finger regi... 32 4.5
gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococc... 32 5.9
gi|1362576|pir||S57722 sli-1 protein - Caenorhabditis elegans >g... 32 5.9
gi|3738284 (AC005309) unknown protein [Arabidopsis thaliana] 32 5.9
gi|1326275 (U58730) similar to the proto-oncogene C-CBL [Caenorh... 32 5.9
gi|91146|pir||A31995 nicotinic acetylcholine receptor-associated... 32 5.9
gi|131128|sp|P12672|PS43_MOUSE 43 KD POSTSYNAPTIC PROTEIN (ACETY... 32 5.9
gi|281007|pir||B43817 transforming protein (cbl) - mouse 32 5.9
gi|115857|sp|P22682|CBL_MOUSE PROTO-ONCOGENE C-CBL >gi|50315|emb... 32 5.9
gi|2832675|emb|CAA16775| (AL021712) hypothetical protein [Arabid... 31 7.8
gi|2495970|sp|Q57862|Y419_METJA HYPOTHETICAL PROTEIN MJ0419 >gi|... 31 7.8
gi|3377941|emb|CAA17526| (AL021960) putative protein (fragment) ... 31 7.8
gi|3319370 (AF077409) contains similarity to C3HC4-type zinc fin... 31 7.8
gi|2738454 (AF003534) putative apoptosis inhibitor [Chilo irides... 31 7.8
gi|1353180|sp|P47732|ZFP_IRV6 ZINC FINGER PROTEIN 31 7.8
gi|3164222|dbj|BAA28598| (AB008518) RMA1 [Arabidopsis thaliana] ... 31 7.8
gi|4510401|gb|AAD21488| (AC006587) putative general negative reg... 31 7.8
gi|2408068|emb|CAB16270| (Z99165) hypothetical protein [Schizosa... 31 7.8
gi|3861164|emb|CAA15064| (AJ235272) unknown [Rickettsia prowazekii] 31 7.8
gi|4376830|gb|AAD18680| (AE001638) polymorphic membrane protein ... 31 7.8
gi|465016|sp|P33288|UVS2_NEUCR UVS-2 PROTEIN >gi|479590|pir||S34... 31 7.8
>gi|3877655|emb|CAA96657| (Z72511) possible zinc finger protein; cDNA EST EMBL:M89115 comes
from this gene; cDNA EST EMBL:D71533 comes from this
gene; cDNA EST EMBL:D72314 comes from this gene; cDNA
EST EMBL:D75164 comes from this gene; cDNA EST
EMBL:C1...
Length = 610
Score = 80.4 bits (195), Expect = 1e-14
Identities = 60/224 (26%), Positives = 114/224 (50%), Gaps = 27/224 (12%)
Query: 747 DXLLIITIFSDELSVLNLLVICFLLGVKSINWIFNMRIYDSDDN--------LGVLQVIS 592
+ L T+F D+ S + ++ LL +K +W+ + R+ + + L ++ V++
Sbjct: 88 ETCLAFTVFRDDFSAIFVMQFIGLLFIKCFHWLADDRVDMMERSPVITLRFHLRMMTVLA 147
Query: 591 LVLSASAFLIAFCH-TFIFSGMC--ILFSFEFFIVTMAAKKNLVLFLLNGMD-----EGD 436
+ A ++ ++ + T I G I+F FE+ I+ + +LL+ D D
Sbjct: 148 ALGFADSYFVSSAYFTTITRGASAQIVFGFEYAILLALVLHVTIKYLLHMHDLRNPQSWD 207
Query: 435 KKTICKFIVEIIFGTIRLVSYLCFFIVTAVKFRVPFNIFRELVNTIKNLGKSIKNLKAFK 256
K + E+ IR + Y F +V P R +++ L K+ ++ +
Sbjct: 208 NKAVYLLYAELFINLIRCLLYGFFAVVMLRVHTFPLFSVRPFYQSVRALHKAFLDVILSR 267
Query: 255 EIKNFLDS------CEDV--MEGTCPICAEDMELGX---KIICGHSFHVECLKRWAEQQQ 109
N ++S ED+ M+ TC IC E+M + ++ C H FH CL+ W ++QQ
Sbjct: 268 RAINAMNSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQ 327
Query: 108 VCPLCRRSLFE 76
CP CR +++
Sbjct: 328 TCPTCRTDIWQ 338
>gi|3650401|emb|CAA21073| (AL031739) zinc finger protein [Schizosaccharomyces pombe]
Length = 677
Score = 73.0 bits (176), Expect = 2e-12
Identities = 66/228 (28%), Positives = 119/228 (51%), Gaps = 47/228 (20%)
Query: 753 LTDXLLIITIFSDELSVLNLLVICFLLGVKSINWIFNMR-----IYDSDDNLGVLQVIS- 592
LT+ +L IT+F + +S+ +++ L+ + + I + R I +D + ++
Sbjct: 84 LTEIMLAITVFREAISISFFMLLSTLMFARVFHSICSFRTERLQIQLTDQRFHIFSRLTC 143
Query: 591 --LVLSA-SAFLIAFCHTFIFSG---MCILFSFEFFIVTM-----AAKKNLVLFLLNGMD 445
VLS A LI C T G +LF EF ++ + A+K + L+ +D
Sbjct: 144 AYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSVLLLNLTIEASKLCIYLYEARHLD 203
Query: 444 E-GDKKTICKFIVEIIFGTIRLVSYLCFFIVTAVKFRVPFNIFRELVNTIKNLGKSIKNL 268
+ D+K+ F +E+ +RL++Y F+ VP R++ +L + I+
Sbjct: 204 QVWDEKSTYLFRLEVCRDGLRLLAYSLLFMYQFPYVSVPIYSIRQMYTCFYSLFRRIREH 263
Query: 267 KAFKEIKNFLDSCEDVM--------EGTCPICAEDM---------------------ELG 175
F++ +++ + TC IC E+M
Sbjct: 264 ARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPPENTDEMEPLPRGLDMTP 323
Query: 174 XKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
++ CGH H CL+ W E+QQ CP+CRRS+ +Q
Sbjct: 324 KRLPCGHILHFHCLRNWLERQQTCPICRRSVIGNQ 358
>gi|4240031|dbj|BAA74802| (AB018422) DNA binding zinc finger protein (Pspzf) [Pisum sativum]
Length = 472
Score = 58.2 bits (138), Expect = 6e-08
Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 237 DSCEDVMEGTCPICAEDM----ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
D C+D EG+C IC E+ ++G CGH +HV C+K+W +++CP+C+ S+ +
Sbjct: 411 DQCQD--EGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSVLPE 467
>gi|1086225|pir||S49446 RING-finger protein (C-terminal) - Lotus japonicus
>gi|558545|emb|CAA85321| (Z36750) protein containing
C-terminal RING-finger [Lotus japonicus]
>gi|1771195|emb|CAA70734| (Y09539) RING-finger protein
[Lotus japonicus]
Length = 549
Score = 54.3 bits (128), Expect = 9e-07
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 216 EGTCPICAEDM----ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
EG+C IC E+ ++G CGH +HV C+K+W +++CP+C+ S+ +
Sbjct: 493 EGSCVICLEEYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASVMPE 544
>gi|4539257|emb|CAB39846| (AL049495) Zinc finger, C3HC4 type, ring finger protein
[Schizosaccharomyces pombe]
Length = 741
Score = 53.5 bits (126), Expect = 2e-06
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 234 SCEDVMEGTCPICAEDM-----ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
S + +M+ TCPIC +DM + K+ CGH F CL++W E CPLCR+ +
Sbjct: 98 SNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>gi|2262176 (AC002329) putative RING zinc-finger protein [Arabidopsis thaliana]
>gi|3790573 (AF078824) RING-H2 finger protein RHA3a
[Arabidopsis thaliana]
Length = 185
Score = 51.5 bits (121), Expect = 6e-06
Identities = 22/42 (52%), Positives = 27/42 (63%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC D G +I +CGHSFHVEC+ +W + CP CRR L
Sbjct: 102 CAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRIL 147
>gi|1707142 (U80836) contains similarity to a C3HC4-class zinc finger
[Caenorhabditis elegans]
Length = 425
Score = 51.5 bits (121), Expect = 6e-06
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 219 MEGTCPICAEDMELGXKI---ICGHSFHVECLKRWAEQQQVCPLCRRSL 82
++G+C IC ED++ KI +CGH +H C+ +W ++ CP CRR++
Sbjct: 188 LQGSCSICFEDLKQNDKISAIVCGHIYHHGCISQWIATKRQCPSCRRTV 236
>gi|2979531 (AC004449) R33683_3 [Homo sapiens]
Length = 103
Score = 51.2 bits (120), Expect = 8e-06
Identities = 20/42 (47%), Positives = 27/42 (63%), Gaps = 3/42 (7%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSL 82
CP+C +D LG ++ C H FH C+ W EQ CP+CR+SL
Sbjct: 21 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 65
>gi|3395787 (AF064801) multiple membrane spanning receptor TRC8 [Homo sapiens]
Length = 664
Score = 50.8 bits (119), Expect = 1e-05
Identities = 28/84 (33%), Positives = 42/84 (49%), Gaps = 5/84 (5%)
Query: 330 FNIFRELVN---TIKNLGKSIKNLKAFKEIKNF-LDSCEDVMEGTCPICAEDMELGXKII 163
FNI+ + N T N ++K + + EIK L DV C IC + +I
Sbjct: 506 FNIYLQAKNGWKTFMNRRTAVKKINSLPEIKGSRLQEINDV----CAICYHEFTTSARIT 561
Query: 162 -CGHSFHVECLKRWAEQQQVCPLCRRSLF 79
C H FH CL++W Q CP+C + ++
Sbjct: 562 PCNHYFHALCLRKWLYIQDTCPMCHQKVY 590
>gi|2132820|pir||S66695 probable membrane protein YOL013c - yeast (Saccharomyces
cerevisiae) >gi|1419785|emb|CAA99012| (Z74755) ORF
YOL013c [Saccharomyces cerevisiae]
Length = 551
Score = 50.0 bits (117), Expect = 2e-05
Identities = 30/93 (32%), Positives = 55/93 (58%), Gaps = 24/93 (25%)
Query: 348 VKFRVPFNIFRELVNTIKNLGKSIKNL-KAFKEIKNFLDSCEDVM----------EGTCP 202
+ FR+P + +++V I L +S +L K ++ K D+ V + C
Sbjct: 291 IPFRMPMMLLKDVVWDILALYQSGTSLWKIWRNNKQLDDTLVTVTVEQLQNSANDDNICI 350
Query: 201 ICAEDM-------------ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
IC +++ + ++ CGH H+ CLK W E+ Q CP+CR +F+++
Sbjct: 351 ICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICRLPVFDEK 407
>gi|4510422|gb|AAD21508| (AC006929) putative zinc-finger protein [Arabidopsis thaliana]
Length = 237
Score = 49.6 bits (116), Expect = 2e-05
Identities = 28/72 (38%), Positives = 39/72 (53%), Gaps = 5/72 (6%)
Query: 285 KSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGX--KII--CGHSFHVECLKRWAE 118
+++++L ++ K ED C IC D E G K+I CGH FHV+C+ W
Sbjct: 119 QAVRSLPVYRYTKAAKQRNED-----CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLS 173
Query: 117 QQQVCPLCR-RSLFEDQ 70
CPLCR LF D+
Sbjct: 174 SYVTCPLCRSNQLFSDK 190
>gi|4538979|emb|CAB39767| (AL049487) putative protein [Arabidopsis thaliana]
Length = 236
Score = 49.2 bits (115), Expect = 3e-05
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 222 VMEGTCPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQXXXXX 55
V + C +C D + K+ CGH+FH+EC+ W CPLCR SL
Sbjct: 106 VKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLS 165
Query: 54 XXXXXILTGIE 22
I++ IE
Sbjct: 166 HQSTEIVSSIE 176
>gi|1076498|pir||S49445 zinc-finger protein (C-terminal) - soybean >gi|558543|emb|CAA85320|
(Z36749) C-terminal zinc-finger [Glycine max]
Length = 388
Score = 49.2 bits (115), Expect = 3e-05
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 216 EGTCPICAEDME----LGXKIICGHSFHVECLKRWAEQQQVCPLCRRS 85
E C IC E+ + +G CGH +HV C+++W ++VCP+C+ S
Sbjct: 332 EEACAICLEEYKNMDYVGTLKACGHDYHVGCIRKWLSMKKVCPICKAS 379
>gi|4538980|emb|CAB39768| (AL049487) putative protein [Arabidopsis thaliana]
Length = 225
Score = 48.4 bits (113), Expect = 5e-05
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 417 FIVEIIFGTIRLVSYLCFFIVTAVKFRVPFNIFRELVNTIKNLGKSIKNLKAFKEIKNFL 238
FIV + I +V + + + V ++ V T NL S L K+I+ L
Sbjct: 24 FIVCVPICVILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNL--STAELGLSKDIREML 81
Query: 237 D-----SCEDVMEGTCPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRS 85
V + C +C D + K+ CGH+FH+EC+ W CPLCR S
Sbjct: 82 PIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLS 141
Query: 84 L 82
L
Sbjct: 142 L 142
>gi|2623297 (AC002409) unknown protein [Arabidopsis thaliana] >gi|3790583
(AF079180) RING-H2 finger protein RHC1a [Arabidopsis
thaliana]
Length = 328
Score = 48.4 bits (113), Expect = 5e-05
Identities = 17/45 (37%), Positives = 28/45 (61%), Gaps = 3/45 (6%)
Query: 216 EGTCPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVCPLCRRSL 82
+ CP+C ++ ELG + + C H +H +C+ W Q CP+CR+ L
Sbjct: 187 DSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234
>gi|3451070|emb|CAA20466| (AL031326) putative protein [Arabidopsis thaliana]
Length = 189
Score = 48.4 bits (113), Expect = 5e-05
Identities = 20/62 (32%), Positives = 36/62 (57%), Gaps = 3/62 (4%)
Query: 279 IKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQ 109
+ +L F+ K + ++ ++ CPIC E+ E+ + CGH FH+ C+ W E+ +
Sbjct: 85 VDDLTDFELKKQYREAIDE-----CPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSE 139
Query: 108 VCPLC 94
CP+C
Sbjct: 140 ACPVC 144
>gi|3341678 (AC003672) putative zinc finger protein [Arabidopsis thaliana]
Length = 624
Score = 48.4 bits (113), Expect = 5e-05
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC E+ G K+ C H FHV+C+ W E++ +CPLCR +
Sbjct: 549 CTICLENATEGEKMRRIAACSHCFHVDCIDPWLEKKSMCPLCRAEI 594
Score = 47.3 bits (110), Expect = 1e-04
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC ED G K+ C H FHV+C+ W ++ CPLCR +
Sbjct: 398 CTICLEDAAEGEKMRRITACSHCFHVDCIDPWLMKKSTCPLCRAEI 443
>gi|4185131 (AC005724) putative zinc finger protein [Arabidopsis thaliana]
Length = 423
Score = 47.3 bits (110), Expect = 1e-04
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKII----CGHSFHVECLKRWAEQQQVCPLCRRSL 82
CP+C + E K+ C H+FHVEC+ W CPLCR +L
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNL 171
>gi|3790581 (AF079179) RING-H2 finger protein RHB1a [Arabidopsis thaliana]
Length = 190
Score = 47.3 bits (110), Expect = 1e-04
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 225 DVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLC-RRSLFEDQ 70
D E CPIC ED ++ + C H FH+ CL W E+ CP+C + +F+D+
Sbjct: 133 DEEEECCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDDR 188
>gi|3582320 (AC005496) hypothetical protein [Arabidopsis thaliana]
Length = 310
Score = 47.3 bits (110), Expect = 1e-04
Identities = 27/68 (39%), Positives = 35/68 (50%), Gaps = 4/68 (5%)
Query: 273 NLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVC 103
N K +K+ + + E C IC E+ + G I+ CGH F EC +W E C
Sbjct: 244 NRKTYKKASDVVGENE-----MCSICLEEFDDGRSIVALPCGHEFDDECALKWFETNHDC 298
Query: 102 PLCRRSL-FEDQ 70
PLCR L EDQ
Sbjct: 299 PLCRFKLPCEDQ 310
>gi|4204263 (AC005223) 40409 [Arabidopsis thaliana]
Length = 351
Score = 47.3 bits (110), Expect = 1e-04
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 207 CPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
C +C +D E+G + + C H FH +CL W E CP+CR L D+
Sbjct: 223 CSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADE 271
>gi|1363737|pir||S59393 probable membrane protein YLR247c - yeast (Saccharomyces cerevisiae)
>gi|662344 (U20865) Ylr247cp [Saccharomyces cerevisiae]
Length = 1556
Score = 46.9 bits (109), Expect = 2e-04
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 309 VNTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLK 130
+N I++ +KNL K D+ D +C IC ++E+G I CGH F C+
Sbjct: 1211 INNIESRLIYLKNLSRLK------DTLNDNQILSCSICLGEVEIGAIIKCGHYFCKSCIL 1264
Query: 129 RWAEQQQVCPLCR 91
W CP+C+
Sbjct: 1265 TWLRAHSKCPICK 1277
>gi|2982466|emb|CAA18230| (AL022223) putative protein [Arabidopsis thaliana]
Length = 344
Score = 46.9 bits (109), Expect = 2e-04
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Query: 273 NLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVC 103
+L A KE+ + L + + C IC +D + G + + C H FH+ C+ W E C
Sbjct: 207 SLPARKEVVDNLPTVKISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSC 266
Query: 102 PLCRRSLFED 73
P+CR L D
Sbjct: 267 PVCRYELPPD 276
>gi|3880441|emb|CAB04890| (Z82062) similar to Zinc finger, C3HC4 type (RING finger); cDNA EST
EMBL:D76353 comes from this gene; cDNA EST EMBL:D71838
comes from this gene; cDNA EST EMBL:D74561 comes from
this gene; cDNA EST EMBL:D73319 comes from this ge...
Length = 489
Score = 46.5 bits (108), Expect = 2e-04
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 216 EGTCPICAEDMELGX---KIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
E TC +C E G K+ C H FH EC+ +W + + CP+CR +
Sbjct: 430 EDTCTVCLSSFEDGESIQKLRCNHVFHPECIYKWLDINKRCPMCREEI 477
>gi|2496947|sp|Q09298|YQO9_CAEEL HYPOTHETICAL 141.2 KD PROTEIN EEED8.9 IN CHROMOSOME II >gi|733606
(U23484) weakly similar to serine/threonine protein
kinase [Caenorhabditis elegans]
Length = 1238
Score = 46.1 bits (107), Expect = 3e-04
Identities = 19/40 (47%), Positives = 26/40 (64%), Gaps = 1/40 (2%)
Query: 210 TCPICAEDMELGX-KIICGHSFHVECLKRWAEQQQVCPLCR 91
TC +C E M+ I+C HSFH CL++WA+ CP+CR
Sbjct: 907 TCAVCLERMDDSVLAILCNHSFHARCLEQWAD--NTCPVCR 945
>gi|3790575 (AF078825) RING-H2 finger protein RHA3b [Arabidopsis thaliana]
Length = 200
Score = 46.1 bits (107), Expect = 3e-04
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 231 CEDVMEGT----CPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C V +G C IC + G +I +C H+FHV C+ +W + CP CRR L
Sbjct: 101 CSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRIL 158
>gi|4493935|emb|CAB38971| (AL034556) predicted using hexExon; MAL3P5.8 (PFC0610c), Hypothetical
protein, len: 1182 aa [Plasmodium falciparum]
Length = 1181
Score = 45.7 bits (106), Expect = 4e-04
Identities = 30/96 (31%), Positives = 50/96 (51%), Gaps = 11/96 (11%)
Query: 369 CFFIVTAVKFRV--PFNIFRELVNTIKNLGKSIKNLKAFKEIKNFL------DSCEDVME 214
C+F ++ +R P N + VN+ +N + +L F+E NF + E
Sbjct: 1070 CYFALSLQSYRHDNPENSTQGNVNSNQNNDVN-NSLSLFREGHNFSCVNYDREKSEHSNL 1128
Query: 213 GTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC E+ + +I C H+FH +C+ +W + CPLC+ L
Sbjct: 1129 KKCCICCENYQHNDNVIFLPCTHNFHKQCILKWISKNTTCPLCKIDL 1175
>gi|3790591 (AF079184) RING-H2 finger protein RHX1a [Arabidopsis thaliana]
Length = 273
Score = 45.7 bits (106), Expect = 4e-04
Identities = 18/48 (37%), Positives = 26/48 (53%), Gaps = 4/48 (8%)
Query: 213 GTCPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
G C +C E ++ +C H+FH +C+ W Q CPLCR LF +
Sbjct: 54 GDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASE 105
>gi|4454011|emb|CAA23064| (AL035396) putative protein [Arabidopsis thaliana]
Length = 594
Score = 45.3 bits (105), Expect = 5e-04
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQ----QQVCPLCRRSLF 79
C IC E M ++ C H FH+ CL+ W +Q CP CR+ LF
Sbjct: 361 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLF 407
>gi|3822225 (AF079183) RING-H2 finger protein RHG1a [Arabidopsis thaliana]
Length = 190
Score = 44.9 bits (104), Expect = 6e-04
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 207 CPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVCPLCR 91
C +C E+ G + CGH FH +C++ W +Q+ +CP+C+
Sbjct: 136 CCVCQEEYTEGEDMGTLECGHEFHSQCIEEWLKQKNLCPICK 177
>gi|3642014|emb|CAA20925| (AL031620) similar to Zinc finger, C3HC4 type (RING finger)
[Caenorhabditis elegans]
Length = 456
Score = 44.5 bits (103), Expect = 8e-04
Identities = 27/70 (38%), Positives = 35/70 (49%), Gaps = 4/70 (5%)
Query: 282 SIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQ- 115
S +NLK K L D TC IC E G K+ C H FH C+ W Q
Sbjct: 226 SKRNLKKIPVKKYRLGDDPD----TCAICLESFASGEKLRHLPCRHVFHCNCIDVWLTQT 281
Query: 114 QQVCPLCRRSLFED 73
+++CPLC+R + D
Sbjct: 282 RKICPLCKRKIGTD 295
>gi|2501730|sp|Q00940|PEXA_PICAN PEROXISOME ASSEMBLY PROTEIN PER8 (PEROXIN-10)
>gi|1076956|pir||A56488 Per8 peroxisomal integral
membrane protein - yeast (Hansenula polymorpha)
>gi|608718|emb|CAA86101| (Z38001) peroxisomal integral
membrane protein Per8p [Pichia angusta]
Length = 295
Score = 44.5 bits (103), Expect = 8e-04
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 18/85 (21%)
Query: 324 IFRELVNTIKNLGKSIKNLKAFKE----IKNFLDSCEDVME--------------GTCPI 199
IF+ + + NL K K ++ I F D DV++ TC +
Sbjct: 188 IFQTVFKNVANLRKLWGATKTVQDSGDLIYRFRDQTSDVIDLADPKVLPYLPEASRTCML 247
Query: 198 CAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
C M+ CGH F +C+ W +++Q CPLCR + E Q
Sbjct: 248 CLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMRESQ 290
>gi|3877196|emb|CAA93773| (Z69903) similar to Zinc finger, C3HC4 type (RING finger)
[Caenorhabditis elegans]
Length = 774
Score = 44.1 bits (102), Expect = 0.001
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 4/54 (7%)
Query: 234 SCEDVMEGTCPICAEDMELGXK----IICGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
S +++ + C +C EDME + + C +H C+++W + +++CP C L E+
Sbjct: 710 SSDELEDNECLVCLEDMETEQETMKCLTCKRQYHSACVRKWFKVKRICPTCDAGLLEE 767
>gi|4335719|gb|AAD17397| (AC006248) putative RING-H2 finger protein RHG1a [Arabidopsis
thaliana]
Length = 704
Score = 44.1 bits (102), Expect = 0.001
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 270 LKAFKEIKNFLDSCEDV-----MEGTCPICAEDMELGXKI---ICGHSFHVECLKRWAEQ 115
LKA K+ K+ S V +E C IC E+ G + CGH FH +C+K+W
Sbjct: 631 LKAMKQHKHTSSSPSSVELHQNIEPCC-ICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMI 689
Query: 114 QQVCPLCR 91
+ +CP+C+
Sbjct: 690 KNLCPICK 697
>gi|731596|sp|P38748|YHB0_YEAST HYPOTHETICAL 67.5 KD PROTEIN IN PRPS4-STE20 INTERGENIC REGION
>gi|626567|pir||S46825 hypothetical protein YHL010c -
yeast (Saccharomyces cerevisiae) >gi|2289881 (U11582) No
definition line found [Saccharomyces cerevisiae]
Length = 585
Score = 44.1 bits (102), Expect = 0.001
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 210 TCPICAEDMELGXK----IICGHSFHVECLKRWAEQQQVCPLCRRS 85
TCP+C E M+ I C H+FH +CL +W + CP+CR S
Sbjct: 239 TCPVCLERMDSETTGLVTIPCQHTFHCQCLNKWKNSR--CPVCRHS 282
>gi|3327164|dbj|BAA31650| (AB014575) KIAA0675 protein [Homo sapiens]
Length = 1208
Score = 44.1 bits (102), Expect = 0.001
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 228 EDVMEGTCPICAEDM--ELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
E+ E C IC E++ E + C H FH +C++ W QQ CP CR
Sbjct: 1141 EEEEEEPCVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQGTCPTCR 1188
>gi|4049802 (AF063866) ORF MSV197 tryptophan repeat gene family protein
[Melanoplus sanguinipes entomopoxvirus]
Length = 336
Score = 43.8 bits (101), Expect = 0.001
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 1/42 (2%)
Query: 207 CPICAEDME-LGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
CPIC D + L K IC H FH +C+ W CPLC+ +
Sbjct: 280 CPICLSDEKCLFSKTICKHVFHKKCIDNWLLNNYNCPLCKTEI 322
>gi|2911058|emb|CAA17568| (AL021961) putative protein [Arabidopsis thaliana]
Length = 666
Score = 43.8 bits (101), Expect = 0.001
Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 3/63 (4%)
Query: 279 IKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQ 109
+K +K K + S +D ME C +C E+ G + CGH FH C+K+W +
Sbjct: 597 LKVMKQHKHTSSAAGSHQD-MEPCC-VCQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKN 654
Query: 108 VCPLCR 91
+CP+C+
Sbjct: 655 LCPICK 660
>gi|3461824 (AC004138) hypothetical protein [Arabidopsis thaliana]
Length = 535
Score = 43.4 bits (100), Expect = 0.002
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 222 VMEGTCPICAEDM---ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
V +G C IC E+ ++ ++ C H +H+EC+++W + CP CR L
Sbjct: 476 VEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKL 525
>gi|2529671 (AC002535) hypothetical protein [Arabidopsis thaliana]
Length = 227
Score = 43.4 bits (100), Expect = 0.002
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 162 CGHSFHVECLKRWAEQQQVCPLCR 91
CGHSFHV+C+ W + CPLCR
Sbjct: 127 CGHSFHVDCIDTWFRSRSTCPLCR 150
>gi|2662157|dbj|BAA23710| (AB007898) KIAA0438 [Homo sapiens]
Length = 708
Score = 43.4 bits (100), Expect = 0.002
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 216 EGTCPICAEDM---ELGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
E CPIC + ++ ++ C H FH C+ W ++ CP+CRR
Sbjct: 631 EQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRR 676
>gi|971275|dbj|BAA06979| (D32249) neurodegeneration associated protein 1 [Rattus rattus]
>gi|1582324|prf||2118320A neurodegeneration-associated
protein 1 [Rattus norvegicus]
Length = 707
Score = 43.4 bits (100), Expect = 0.002
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 216 EGTCPICAEDM---ELGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
E CPIC + ++ ++ C H FH C+ W ++ CP+CRR
Sbjct: 630 EQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRR 675
>gi|1519680 (U67953) contains similarity to C3HC4-class zinc finger
(PS:PS00518) [Caenorhabditis elegans]
Length = 409
Score = 43.4 bits (100), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 225 DVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
D E C +C D+ K+ C H F C++ W +Q+ CP+CR + +D
Sbjct: 342 DHEEQPCAVCHGDLLQPIKLECTHVFCKFCIETWLDQKSTCPICRAEVTKD 392
>gi|2894379|emb|CAA74911| (Y14573) ring finger protein [Hordeum vulgare]
Length = 295
Score = 43.0 bits (99), Expect = 0.002
Identities = 20/47 (42%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Query: 228 EDVMEGTCPIC----AEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
E V+ C IC A+ E+ CGH FHV C+ W CP CRR
Sbjct: 202 EGVLLSECAICLSEFADKEEIRVLPQCGHGFHVACVDAWLRAHSSCPSCRR 252
>gi|3413712 (AC004747) hypothetical protein [Arabidopsis thaliana]
Length = 479
Score = 43.0 bits (99), Expect = 0.002
Identities = 18/44 (40%), Positives = 27/44 (60%), Gaps = 4/44 (9%)
Query: 222 VMEGTCPICAE--DMELGXKI--ICGHSFHVECLKRWAEQQQVCPLCR 91
+ + TCP+C E D + G + +C HSFH C+ W + CP+CR
Sbjct: 162 IEQPTCPVCLERLDQDTGGILTTMCNHSFHCSCISNWPDSS--CPVCR 207
>gi|2894600|emb|CAA17134| (AL021889) putative protein [Arabidopsis thaliana]
Length = 1208
Score = 43.0 bits (99), Expect = 0.002
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 207 CPICA----EDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC ED L C H+FHV C+ RW + CPLCR +
Sbjct: 1053 CSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKI 1098
>gi|2828790 (U06944) PRAJA1 [Mus musculus]
Length = 424
Score = 43.0 bits (99), Expect = 0.002
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 300 IKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDM---ELGXKIICGHSFHVECLK 130
+ N S +++ A EI D E CPIC + E+ ++ C H FH C+
Sbjct: 319 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVS 378
Query: 129 RWAEQQQVCPLCR 91
W ++ CP+CR
Sbjct: 379 IWLQKSGTCPVCR 391
>gi|3790593 (AF079185) RING-H2 finger protein RHY1a [Arabidopsis thaliana]
Length = 101
Score = 43.0 bits (99), Expect = 0.002
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
C IC E G +I C HSFH CL W CP CRR++ ++
Sbjct: 54 CSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCRRAIAKE 101
>gi|4580469|gb|AAD24393|AC006081_15 (AC006081) putative zinc finger protein [Arabidopsis thaliana]
Length = 390
Score = 43.0 bits (99), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 207 CPICA---EDMELGXKII-CGHSFHVECLKRWAEQQQVCPLCR 91
C +C ED+E+ + C H+FH+ C+ +W EQ CPLCR
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCR 166
>gi|3377817 (AF076275) contains similarity to C3HC4-type zinc fingers (Pfam:
zf-C3HC4.hmm, score: 29.48) [Arabidopsis thaliana]
Length = 461
Score = 42.6 bits (98), Expect = 0.003
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 243 FLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQ-QQVCPLCRRSL 82
F CED+ C +C + + I+CGH+F ++C +W +Q Q+C CR ++
Sbjct: 100 FTAICEDL---NCSLCNQLPDRPVTILCGHNFCLKCFDKWIDQGNQICATCRSTI 151
>gi|4337011|gb|AAD18035| (AF119572) zinc-binding peroxisomal integral membrane protein
[Arabidopsis thaliana]
Length = 381
Score = 42.6 bits (98), Expect = 0.003
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 237 DSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
DS G C +C + CGH F C+ W ++Q CPLCR
Sbjct: 317 DSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCR 365
>gi|2132275|pir||S69076 hypothetical protein YPR093c - yeast (Saccharomyces cerevisiae)
>gi|1230696 (U51033) RING type zinc finger
[Saccharomyces cerevisiae]
Length = 310
Score = 42.6 bits (98), Expect = 0.003
Identities = 17/39 (43%), Positives = 25/39 (63%), Gaps = 6/39 (15%)
Query: 207 CPICAEDMELGXKI----ICGHSFHVECLKRWAEQ--QQVCPLCR 91
CPIC D + G + +CGH FH+ C++ W + CP+CR
Sbjct: 26 CPICLADDQEGEQFGCLNVCGHKFHLNCIREWHKYSINLKCPICR 70
>gi|3075382 (AC002505) putative peroxisome assembly protein PER8 [Arabidopsis
thaliana] >gi|3075384 (AC004484) putative peroxisome
assembly protein PER8 [Arabidopsis thaliana]
Length = 310
Score = 42.6 bits (98), Expect = 0.003
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 237 DSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
DS G C +C + CGH F C+ W ++Q CPLCR
Sbjct: 246 DSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCR 294
>gi|2565009|gb|AAB81879|AAB81879 (AC002983) putative zinc finger protein [Arabidopsis thaliana]
Length = 432
Score = 42.6 bits (98), Expect = 0.003
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 243 FLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQ-QQVCPLCRRSL 82
F CED+ C +C + + I+CGH+F ++C +W +Q Q+C CR ++
Sbjct: 100 FTAICEDL---NCSLCNQLPDRPVTILCGHNFCLKCFDKWIDQGNQICATCRSTI 151
>gi|4490758|emb|CAB38920| (AL035708) putative protein [Arabidopsis thaliana]
Length = 253
Score = 42.6 bits (98), Expect = 0.003
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC ++E + IC H FH++C+ W CP+CR +L
Sbjct: 123 CAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 168
>gi|4049796 (AF063866) ORF MSV205 tryptophan repeat gene family protein
[Melanoplus sanguinipes entomopoxvirus]
Length = 530
Score = 42.6 bits (98), Expect = 0.003
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 297 KNLGKSIK-NLKAFKEIKN--FLDSC------EDVMEGTCPICAEDMELG-XKIICGHSF 148
K++ K K N+ ++ I N +++ C +++ C IC + + K +C H F
Sbjct: 442 KHINKINKYNICTYQNISNKLYIELCKAYEIFDNINNEDCIICLSNEQNNFTKTMCNHIF 501
Query: 147 HVECLKRWAEQQQVCPLCRRSL 82
H +C+ W CP+CRR +
Sbjct: 502 HKKCIDIWLNNNNTCPMCRRQI 523
>gi|3873857|emb|CAA84635| (Z35595) possesses similarity with C3HC4 type zinc finger domains
[Caenorhabditis elegans]
Length = 170
Score = 42.2 bits (97), Expect = 0.004
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 225 DVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLC 94
D+ C IC D E G +I C HSFH EC+ W + CP C
Sbjct: 89 DMTSNECAICMIDFEPGERIRFLPCMHSFHQECVDEWLMKSFTCPSC 135
>gi|4049885 (AF063866) ORF MSV027 tryptophan repeat gene family protein
[Melanoplus sanguinipes entomopoxvirus]
Length = 297
Score = 42.2 bits (97), Expect = 0.004
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 207 CPICA-EDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
CPIC + + K +C H FH C+ W CP+CR +L
Sbjct: 252 CPICLINNKSIFVKTLCNHIFHKHCINIWLMNNSTCPMCRFTL 294
>gi|1754692 (U81154) contains a deletion of 399 base pairs as compared to ICPO
protein of the Ab4p strain of Equine herpesvirus 1,
encoded by Genbank Accession Number M86664;
transcriptional protein [Equine herpesvirus 1]
Length = 419
Score = 41.8 bits (96), Expect = 0.005
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 207 CPICAED-MELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
CPIC ED + C H+F C+ RW Q CPLC+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>gi|2606010 (AF030027) 63 [Equine herpesvirus 4]
Length = 536
Score = 41.8 bits (96), Expect = 0.005
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 207 CPICAED-MELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
CPIC ED + C H+F C+ RW Q CPLC+
Sbjct: 9 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 48
>gi|124137|sp|P28990|ICP0_HSVEB TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0 >gi|73902|pir||WZBEF5 59K
transcriptional activator - equine herpesvirus 1 (strain
Ab4p) >gi|330854 (M86664) transcriptional activator
[Equine herpesvirus 1]
Length = 532
Score = 41.8 bits (96), Expect = 0.005
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 207 CPICAED-MELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
CPIC ED + C H+F C+ RW Q CPLC+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>gi|3790587 (AF079182) RING-H2 finger protein RHF2a [Arabidopsis thaliana]
Length = 375
Score = 41.8 bits (96), Expect = 0.005
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 237 DSCEDVMEGTCPICAE---DMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
D+C+D C IC E + + C H +H++C+ W ++ CP+C +S+
Sbjct: 27 DACDDA----CSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSI 77
>gi|3927839 (AC005727) hypothetical protein [Arabidopsis thaliana]
Length = 145
Score = 41.8 bits (96), Expect = 0.005
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 4/46 (8%)
Query: 228 EDVMEGTCPICAEDMELGXKII----CGHSFHVECLKRWAEQQQVCPLCR 91
+ V C IC ED ++ + C H FHV+C+ W + CP+CR
Sbjct: 86 DGVKADVCVICLEDFKVNDVVRVLVRCKHVFHVDCIDSWCFYKLTCPICR 135
>gi|515101|pdb|1CHC| Equine Herpes Virus-1 (C3hc4, Or Ring Domain) (Nmr, 1 Structure)
Length = 68
Score = 41.8 bits (96), Expect = 0.005
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 207 CPICAED-MELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
CPIC ED + C H+F C+ RW Q CPLC+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>gi|2894601|emb|CAA17135| (AL021889) putative protein [Arabidopsis thaliana]
Length = 289
Score = 41.4 bits (95), Expect = 0.007
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 4/42 (9%)
Query: 207 CPICAEDME----LGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC + + L C H FH EC+ W E + CP+CRR L
Sbjct: 110 CAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDL 155
>gi|2502079 (AF022391) immediate early protein; ICP0 [Feline herpesvirus 1]
Length = 498
Score = 41.4 bits (95), Expect = 0.007
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 1/42 (2%)
Query: 207 CPICAEDM-ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
CPIC + M +L + C H F CL RW CPLC+ S+
Sbjct: 8 CPICLDPMNDLTFTMPCLHKFCYSCLSRWVGLNNKCPLCKTSV 50
>gi|3128178 (AC004521) hypothetical protein [Arabidopsis thaliana]
Length = 180
Score = 41.4 bits (95), Expect = 0.007
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 207 CPICAEDMELGX---KIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC ED +G ++ C H +H +C+ W CPLCR L
Sbjct: 96 CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVEL 140
>gi|4512649|gb|AAD21704| (AC007048) hypothetical protein [Arabidopsis thaliana]
Length = 276
Score = 41.0 bits (94), Expect = 0.009
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 207 CPICAEDMELGXKII------CGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC ++L +I C H FH CL+RW + + CP CRR L
Sbjct: 226 CVICMTTIDLRHRINDCMVTPCEHIFHSGCLQRWMDIKMECPTCRRPL 273
>gi|3219947|sp|O13747|YDRD_SCHPO HYPOTHETICAL 61.8 KD PROTEIN C16E8.13 IN CHROMOSOME I
>gi|2330701|emb|CAB11041| (Z98529) hypothetical
zinc_finger protein [Schizosaccharomyces pombe]
Length = 547
Score = 41.0 bits (94), Expect = 0.009
Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 4/40 (10%)
Query: 210 TCPICAEDMELGXK----IICGHSFHVECLKRWAEQQQVCPLCR 91
TC +C E M+ I+C H+FH CL++W CP+CR
Sbjct: 207 TCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSS--CPVCR 248
>gi|4454482|gb|AAD20929| (AC006234) hypothetical protein [Arabidopsis thaliana]
Length = 515
Score = 41.0 bits (94), Expect = 0.009
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 207 CPICAEDMELGXKII------CGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC ++L +I C H FH CL+RW + + CP CRR L
Sbjct: 465 CVICMTTIDLRHRINDCMVTPCEHIFHSGCLQRWMDIKMECPTCRRPL 512
>gi|3327106|dbj|BAA31621| (AB014546) KIAA0646 protein [Homo sapiens]
>gi|3721580|dbj|BAA33557| (AB012770) new zinc finger
protein [Homo sapiens]
>gi|4504867|ref|NP_003949.1|pKIAA0646| UNKNOWN
Length = 485
Score = 41.0 bits (94), Expect = 0.009
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 276 KNLKAFKEIKNFLDSCEDVMEGT--CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVC 103
+ ++A KE L DV+E C IC+E + C HSF C+ W +++ C
Sbjct: 380 EKMQAQKE--EVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIEC 437
Query: 102 PLCRRSL 82
P+CR+ +
Sbjct: 438 PICRKDI 444
>gi|3790554 (AF078683) RING-H2 finger protein RHA1a [Arabidopsis thaliana]
Length = 159
Score = 41.0 bits (94), Expect = 0.009
Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 6/76 (7%)
Query: 318 RELVNTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII----CGHS 151
R ++T +L + + F ++ + C C +C D E K+ CGH
Sbjct: 56 RHALSTSASLANELIPVVRFSDLPTDPEDC-------CTVCLSDFESDDKVRQLPKCGHV 108
Query: 150 FHVECLKRWA--EQQQVCPLCR 91
FH CL RW + CP+CR
Sbjct: 109 FHHHCLDRWIVDYNKMKCPVCR 130
>gi|3249088 (AC004473) Contains similarity to goliath protein gb|M97204 from D.
melanogster. [Arabidopsis thaliana]
Length = 327
Score = 41.0 bits (94), Expect = 0.009
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Query: 207 CPICAEDMELG---XKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C +C E+ +G ++ C H +H +C+ W CP+CRR L
Sbjct: 224 CTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDL 268
>gi|3790569 (AF078822) RING-H2 finger protein RHA2a [Arabidopsis thaliana]
Length = 155
Score = 40.6 bits (93), Expect = 0.012
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 207 CPICAEDMELGX---KIICGHSFHVECLKRWAEQ-QQVCPLCRRSLFED 73
C +C ++ G K+ C H FH +CL+ W Q CPLCR +L D
Sbjct: 86 CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSD 134
>gi|3252872 (AF035620) BRCA1-associated protein 2 [Homo sapiens]
Length = 600
Score = 40.6 bits (93), Expect = 0.012
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 207 CPICAEDMELGXK----IICGHSFHVECLKRWAEQQQVCPLCR 91
C +C E M+ +C HSFH +CL+RW CP+CR
Sbjct: 264 CTVCLERMDESVNGILTTLCNHSFHSQCLQRW--DDTTCPVCR 304
>gi|3808337|gb|AAC69348| (AF101318) No definition line found [Caenorhabditis elegans]
Length = 943
Score = 40.6 bits (93), Expect = 0.012
Identities = 15/52 (28%), Positives = 29/52 (54%), Gaps = 4/52 (7%)
Query: 228 EDVMEGTCPICAEDMELGXKII----CGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
+D+ + C +C EDM + + C +H C ++W + +++CP C L +D
Sbjct: 881 DDLEDKECLVCLEDMMEEHETLKCSNCKRQYHTGCAQKWFKVKRICPTCNSGLLDD 936
>gi|2829745|sp|P90859|YUES_CAEEL HYPOTHETICAL 64.7 KD PROTEIN F26E4.11 IN CHROMOSOME I
>gi|3876424|emb|CAB03009| (Z81070) similar to Zinc
finger, C3HC4 type (RING finger); cDNA EST EMBL:T01286
comes from this gene; cDNA EST EMBL:T01287 comes from
this gene; cDNA EST EMBL:T01639 comes from this gene;
cDNA EST yk360c1.5 comes from this gene...
>gi|3876736|emb|CAB03049| (Z81075) similar to Zinc
finger, C3HC4 type (RING finger); cDNA EST EMBL:T01286
comes from this gene; cDNA EST EMBL:T01287 comes from
this gene; cDNA EST EMBL:T01639 comes from this gene;
cDNA EST yk360c1.5 comes from this gene...
Length = 564
Score = 40.6 bits (93), Expect = 0.012
Identities = 27/112 (24%), Positives = 56/112 (49%), Gaps = 5/112 (4%)
Query: 426 ICKFIVEIIFGTIRLVSYLCFFIVTAVKF----RVPFNIFRELVNTIKNLGKSIKNL-KA 262
+C+ I + F +L+++ +T++ F ++ +N E ++ +N K +++ ++
Sbjct: 265 VCELIQMLSFA--QLLAFSPGLNLTSIFFLYHMKLTYNCMTEQLSRHRNHKKIFEHIERS 322
Query: 261 FKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
+ +K C + + C +C E + ++ C H FH CL W Q CP CR
Sbjct: 323 YPSVK-----CANG-DDRCVVCWELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCR 373
>gi|102505|pir||S15788 intermediate early protein IE110 homolog - Caenorhabditis elegans
Length = 141
Score = 40.6 bits (93), Expect = 0.012
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 26/75 (34%)
Query: 294 NLGKSIKNLKAFKEIKNFLDSCEDVM--EGTCPICAEDME-------------------- 181
N+G + K++K ++ D + TC IC ++++
Sbjct: 21 NVGSLPIDKKSYKALRLMDRETTDQQKEDATCAICLDNLQNNVDIPEDHVIKEELKIDPT 80
Query: 180 -LGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
G +I C H FH CL W E QQ CP CR+ + D+
Sbjct: 81 TFGTTVIVMPCKHRFHYFCLTLWLEAQQTCPTCRQKVKTDK 121
>gi|418354|sp|P30631|YOUD_CAEEL HYPOTHETICAL 18.8 KD PROTEIN ZK637.14 IN CHROMOSOME III
>gi|3881662|emb|CAA77447| (Z11115) predicted using
Genefinder; similar to HSV11 IE110 [Caenorhabditis
elegans]
Length = 161
Score = 40.6 bits (93), Expect = 0.012
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 26/75 (34%)
Query: 294 NLGKSIKNLKAFKEIKNFLDSCEDVM--EGTCPICAEDME-------------------- 181
N+G + K++K ++ D + TC IC ++++
Sbjct: 41 NVGSLPIDKKSYKALRLMDRETTDQQKEDATCAICLDNLQNNVDIPEDHVIKEELKIDPT 100
Query: 180 -LGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
G +I C H FH CL W E QQ CP CR+ + D+
Sbjct: 101 TFGTTVIVMPCKHRFHYFCLTLWLEAQQTCPTCRQKVKTDK 141
>gi|124139|sp|P09309|ICP0_VZVD TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0 >gi|73901|pir||WZBE61
gene 61 protein - human herpesvirus 3
>gi|60050|emb|CAA27944| (X04370) ORF 61 (AA1-467) [Human
herpesvirus 3] >gi|228664|prf||1808271A gene 61 protein
[Human herpesvirus 3]
Length = 467
Score = 40.6 bits (93), Expect = 0.012
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Query: 225 DVMEGTCPICAEDM-ELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
D + TC IC + +LG + C H F C++ W CPLCR
Sbjct: 13 DASDNTCTICMSTVSDLGKTMPCLHDFCFVCIRAWTSTSVQCPLCR 58
>gi|3873408 (L76926) putative zinc finger protein [Arabidopsis thaliana]
Length = 304
Score = 40.6 bits (93), Expect = 0.012
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 207 CPICA---EDMELGXKII-CGHSFHVECLKRWAEQQQVCPLCR 91
C +C E+ E G + C H+FHV+C+ W CPLCR
Sbjct: 119 CAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCR 161
>gi|4008555|emb|CAA22476| (AL034490) putative PHD-type zinc finger [Schizosaccharomyces
pombe]
Length = 571
Score = 40.6 bits (93), Expect = 0.012
Identities = 15/27 (55%), Positives = 16/27 (58%)
Query: 171 KIICGHSFHVECLKRWAEQQQVCPLCR 91
KI CGH FH CL+ W CPLCR
Sbjct: 53 KIPCGHYFHNHCLESWCRVANTCPLCR 79
>gi|134202|sp|P22470|SAN1_YEAST SAN1 PROTEIN >gi|83516|pir||S05807 SAN1 protein - yeast
(Saccharomyces cerevisiae) >gi|940866|emb|CAA62213|
(X90585) SAN1 [Saccharomyces cerevisiae]
>gi|984175|emb|CAA90812| (Z54139) San1p [Saccharomyces
cerevisiae]
Length = 610
Score = 40.2 bits (92), Expect = 0.016
Identities = 14/32 (43%), Positives = 21/32 (64%)
Query: 171 KIICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
K+ CGH F EC+ +W+ + CPLCR+ + E
Sbjct: 254 KLPCGHIFGRECIYKWSRLENSCPLCRQKISE 285
>gi|3645985|emb|CAA20888| (AL031581) 1-evidence=predicted by content;
1-method=genefinder;084; 1-method_score=23.36;
1-evidence_end; 2-evidence=predicted by match;
2-match_accession=AA141041;
2-match_description=CK01110.3prime CK Drosophila
melanogaster...
Length = 136
Score = 40.2 bits (92), Expect = 0.016
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 165 ICGHSFHVECLKRWAEQQQVCPLCRR 88
+C H+FH C+ RW + +QVCPL R
Sbjct: 102 VCNHAFHFHCISRWLKTRQVCPLDNR 127
>gi|3914299|sp|O60683|PEXA_HUMAN PEROXISOME ASSEMBLY PROTEIN PEX10 (PEROXIN-10) >gi|3170653
(AF060502) peroxisome assembly protein PEX10 [Homo
sapiens] >gi|4505715|ref|NP_002608.1|pPEX10| peroxisome
biogenesis factor 10
Length = 326
Score = 40.2 bits (92), Expect = 0.016
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
C +C E+ CGH F EC+ W + CPLCR
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
>gi|133250|sp|P19474|RO52_HUMAN 52 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN (SS-A))
(RO(SS-A)) >gi|105146|pir||A37241 52K autoantigen
Ro/SS-A - human >gi|337485 (M34551) 52-kD Ro/SSA
ribonucleoprotein [Homo sapiens] >gi|665918 (U01882) 52
kda component of SS-A/Ro autoantigen [Homo sapiens]
>gi|747927 (U13658) RO52 gene product [Homo sapiens]
Length = 475
Score = 40.2 bits (92), Expect = 0.016
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKRWAE-QQQVCPLCRR 88
E TCPIC + I CGHSF EC+ + + VCP+CR+
Sbjct: 13 EVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQ 56
>gi|2746335 (AF037205) RING zinc finger protein [Mus musculus]
Length = 381
Score = 40.2 bits (92), Expect = 0.016
Identities = 16/46 (34%), Positives = 29/46 (62%), Gaps = 4/46 (8%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRW-AEQQQVCPLCRRSLFEDQ 70
C IC E+ E G K+ C H++H +C+ W + ++ CP+C++ + Q
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>gi|4493956|emb|CAB11123| (Z98551) predicted using hexExon; MAL3P6.28 (PFC0845c),
Hypothetical protein, len: 167 aa; Similarity to model
organism hypothetical proteins (C.elegans,
D.melanogaster, S.cerevisiae & S.pombe). C.elegans
protein ZK287.5 (TR:...
Length = 166
Score = 40.2 bits (92), Expect = 0.016
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 165 ICGHSFHVECLKRWAEQQQVCPL 97
+C H+FH+ C+ RW + +QVCPL
Sbjct: 132 VCNHAFHLHCISRWIKARQVCPL 154
>gi|4105798 (AF049930) PGP237-11 [Petunia x hybrida]
Length = 285
Score = 39.9 bits (91), Expect = 0.020
Identities = 20/48 (41%), Positives = 28/48 (57%), Gaps = 5/48 (10%)
Query: 228 EDVMEGTCPICAEDMELGXKII----CGHSFHVECLKRWAEQQQV-CPLCRRS 85
E M CP+C E + K I CGH+ H+EC+ + + Q CP+C RS
Sbjct: 155 ERAMHHNCPVCFEYVFDTTKNITVLPCGHTMHLECVMQMEQHNQYSCPVCSRS 207
>gi|3308984|dbj|BAA31563| (AB008516) mtprd [Mus musculus]
Length = 1979
Score = 39.9 bits (91), Expect = 0.020
Identities = 17/42 (40%), Positives = 22/42 (51%), Gaps = 2/42 (4%)
Query: 210 TCPICAEDMELGXKII--CGHSFHVECLKRWAEQQQVCPLCRRS 85
+C IC E + + CGH FH C K+W + Q CP C S
Sbjct: 1930 SCEICHEIFKSKNMRVLKCGHKFHKGCFKQWLKGQSTCPTCGSS 1973
>gi|266331|sp|P29836|ICP0_HSVBK TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0 (P135 PROTEIN) (IER
2.9/ER2.6) >gi|73651|pir||EDBE22 immediate-early protein
IER2.9 - bovine herpesvirus 1 (strain K22) >gi|330768
(M84464) p135 protein [Bovine herpesvirus type 1]
Length = 676
Score = 39.9 bits (91), Expect = 0.020
Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 213 GTCPICAEDMELGXKII-CGHSFHVECLKRWAEQQQVCPLCR 91
G+C IC + + + + C H+F + C++RW E + CPLC+
Sbjct: 11 GSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCK 52
>gi|124136|sp|P29128|ICP0_HSVBJ TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0 (P135 PROTEIN) (IER
2.9/ER2.6) >gi|73652|pir||EDBE23 immediate-early protein
IER2.9 - bovine herpesvirus 1 (strain Jura) >gi|330770
(M84465) p135 protein [Bovine herpesvirus type 1]
>gi|2653352|emb|CAA06138| (AJ004801) immediate-early
transactivator protein with Zn finger (cell nucleus)
[Bovine herpesvirus type 1.1]
Length = 676
Score = 39.9 bits (91), Expect = 0.020
Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 213 GTCPICAEDMELGXKII-CGHSFHVECLKRWAEQQQVCPLCR 91
G+C IC + + + + C H+F + C++RW E + CPLC+
Sbjct: 11 GSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCK 52
>gi|1077251|pir||S52511 hypothetical protein YDL008w - yeast (Saccharomyces cerevisiae)
>gi|683689|emb|CAA88351| (Z48432) unknown [Saccharomyces
cerevisiae] >gi|1430969|emb|CAA98564| (Z74056) ORF
YDL008w [Saccharomyces cerevisiae]
Length = 165
Score = 39.5 bits (90), Expect = 0.027
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 5/49 (10%)
Query: 231 CEDVMEGTCPICAEDMELGXKII--CGHSFHVECLKRWAE---QQQVCPLCRRS 85
C GTCP C + +I C H+FH C+ RW + + +CP+CR++
Sbjct: 44 CRASYNGTCPSCKFPGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLCPMCRQT 97
>gi|1903359|gb|AAB70441| (AC000104) F19P19.21 [Arabidopsis thaliana]
Length = 381
Score = 39.5 bits (90), Expect = 0.027
Identities = 31/111 (27%), Positives = 54/111 (47%), Gaps = 23/111 (20%)
Query: 414 IVEIIFGTIRLVSYLCFFIVTAVKFRVPFNIFRE----------LVNTIKNLGKSIKNLK 265
++ I+ LVSY F I + + +IFR ++ + + + +
Sbjct: 48 VIGILATAFLLVSYYIFVIKCCLNWH-QIDIFRRRRRSSDQNPLMIYSPHEVNRGLDE-S 105
Query: 264 AFKEIKNFLDSCEDVMEGT---------CPICAEDMELGXKII----CGHSFHVECLKRW 124
A + I F DV+ G C +C + + K+ C H FH++C+ W
Sbjct: 106 AIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIW 165
Query: 123 AEQQQVCPLCRRSL 82
+ CPLCR S+
Sbjct: 166 LQGNANCPLCRTSV 179
>gi|2605922 (AF029693) ring finger protein [Brevicoryne brassicae]
Length = 133
Score = 39.5 bits (90), Expect = 0.027
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 207 CPICAEDM-ELGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
C IC +D+ C H F +CL RW+ Q CPLC++
Sbjct: 50 CSICLDDLTNKCHSDTCWHLFCFDCLVRWSNSQATCPLCKK 90
>gi|3875262|emb|CAA99823| (Z75533) similar to Zinc finger, C3HC4 type (RING finger); cDNA EST
CEMSA27F comes from this gene; cDNA EST CEMSA27R comes
from this gene; cDNA EST yk405b10.3 comes from this gene
[Caenorhabditis elegans] >gi|3878009|emb|CAB16922|
(Z99772) similar to Zinc finger, C3HC4 type (RING
finger); cDNA EST CEMSA27F comes from this gene; cDNA EST
CEMSA27R comes from this gene; cDNA EST yk405b10.3 comes
from this gene [Caenorhabditis elegans]
Length = 2160
Score = 39.5 bits (90), Expect = 0.027
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%)
Query: 216 EGTCPICAEDMELGXKII----CGHSFHVECLKRWAEQQQVCPLCRRSL 82
E C IC E +E + + C +H C+ RW + VCP C R+L
Sbjct: 2102 EDGCLICTEIIEEAVETVTCDTCTREYHYHCISRWLKINSVCPQCSRAL 2150
>gi|283833|pir||A43906 nuclear phosphoprotein xnf7 - African clawed frog >gi|214915
(M63705) xnf7 [Xenopus laevis] >gi|238611|bbs|64520
(S64515) zinc finger nuclear phosphoprotein=xnf7
[Xenopus laevis, Peptide, 609 aa] [Xenopus laevis]
Length = 609
Score = 39.5 bits (90), Expect = 0.027
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECL-KRWAEQQQ-VCPLCRRSL 82
E TCP+C E + + CGH+F C+ K W Q CP CR S+
Sbjct: 142 ELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESI 188
>gi|3063710|emb|CAA18601| (AL022537) putative protein [Arabidopsis thaliana]
Length = 495
Score = 39.5 bits (90), Expect = 0.027
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 4/67 (5%)
Query: 216 EGTCPIC----AEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQXXXXXXX 49
+ C IC A + EL ++ C H FH EC+ +W + CPLC+ + E
Sbjct: 360 DAVCCICLAKYANNEEL-RELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNSDLTSQG 418
Query: 48 XXXILTGIEXD 16
L+ E D
Sbjct: 419 ILTSLSSGEND 429
>gi|3928165|emb|CAA09084| (AJ010317) TRAF interacting protein [Fugu rubripes]
Length = 433
Score = 39.5 bits (90), Expect = 0.027
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAE--QQQVCPLCRRSL 82
C IC++ + + CGH+FH ECL RW + + CP CR+ +
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHHECLVRWFQTAPTKTCPQCRKQV 53
>gi|466326 (L26342) N1R [Rabbit fibroma virus]
Length = 234
Score = 39.5 bits (90), Expect = 0.027
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 270 LKAFKEIKNFLDSCEDVMEGT-CPICAEDME--------LGXKIICGHSFHVECLKRWAE 118
LK + N + + +G C IC E + G C H F +EC+ RW +
Sbjct: 151 LKTIPNVVNEYEMLHNRYKGEECAICMEPIYNKSIKNSFFGVLSHCNHIFCIECIDRWKK 210
Query: 117 QQQVCPLCR 91
Q CP+CR
Sbjct: 211 QNNKCPVCR 219
>gi|3881649|emb|CAA94801| (Z70757) Similarity to yeast hypothetical protein PIR accession
number S52511; cDNA EST EMBL:D73067 comes from this
gene; cDNA EST EMBL:D74461 comes from this gene; cDNA
EST EMBL:D76044 comes from this gene; cDNA EST yk504c7.3
...
Length = 110
Score = 39.1 bits (89), Expect = 0.035
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 162 CGHSFHVECLKRWAEQQQVCPLCRR 88
C H+FH C+ RW + +QVCPL R
Sbjct: 77 CNHAFHFHCISRWLKTRQVCPLDNR 101
>gi|1321818|emb|CAA64725| (X95455) RING zinc finger protein [Gallus gallus]
>gi|1589724|prf||2211437A RING finger protein [Gallus
gallus]
Length = 381
Score = 39.1 bits (89), Expect = 0.035
Identities = 15/46 (32%), Positives = 29/46 (62%), Gaps = 4/46 (8%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRW-AEQQQVCPLCRRSLFEDQ 70
C IC ++ E G K+ C H++H +C+ W + ++ CP+C++ + Q
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>gi|2746333 (AF037204) RING zinc finger protein [Homo sapiens] >gi|3387925
(AF070558) RING zinc finger protein RZF [Homo sapiens]
Length = 381
Score = 39.1 bits (89), Expect = 0.035
Identities = 15/46 (32%), Positives = 29/46 (62%), Gaps = 4/46 (8%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRW-AEQQQVCPLCRRSLFEDQ 70
C IC ++ E G K+ C H++H +C+ W + ++ CP+C++ + Q
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>gi|2266904|gb|AAC24651| (AE001274) L1231.6 [Leishmania major]
Length = 743
Score = 39.1 bits (89), Expect = 0.035
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 207 CPICAEDMELGXKI--ICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
C IC + + L + +C HSFH+ C + CPLCR S+++
Sbjct: 376 CTICLDPLYLSACVTTLCQHSFHLSCYAQLPSGSAECPLCRFSVYD 421
>gi|3808336|gb|AAC69347| (AF101318) No definition line found [Caenorhabditis elegans]
Length = 574
Score = 39.1 bits (89), Expect = 0.035
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 216 EGTCPICAEDMELGXKII----CGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
+ C +C EDM+ + + C +H C ++W + +++CP C L +D
Sbjct: 516 DNECLVCLEDMKEEHETLKCLDCKRKYHTGCAQKWFKVKRICPTCDAGLLDD 567
>gi|4371286|gb|AAD18144| (AC006260) putative C-terminal RING-finger protein [Arabidopsis
thaliana]
Length = 498
Score = 39.1 bits (89), Expect = 0.035
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 162 CGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
CGH +H C+K+W + CP+C+ D
Sbjct: 463 CGHDYHGRCIKKWLSMKNSCPICKSPALPD 492
>gi|3790567 (AF078821) RING-H2 finger protein RHA1b [Arabidopsis thaliana]
Length = 157
Score = 39.1 bits (89), Expect = 0.035
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 216 EGTCPICAEDMELGXKII----CGHSFHVECLKRWAE--QQQVCPLCRRSLFEDQ 70
E C +C D KI CGH FH CL RW + CP+CR ++
Sbjct: 82 EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLPEE 136
>gi|1945615|dbj|BAA19739| (D76444) hkf-1 [Homo sapiens]
Length = 685
Score = 38.7 bits (88), Expect = 0.046
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 4/39 (10%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRW-AEQQQVCPLCR 91
C +C E+ E G ++ CGH FH C+ W A + CP+CR
Sbjct: 621 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 663
>gi|2911873 (AF047662) contains similarity to C3HC4-type zinc finger
[Caenorhabditis elegans]
Length = 955
Score = 38.7 bits (88), Expect = 0.046
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 228 EDVMEGTCPICAEDMELGXKII----CGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
+++ + C +C EDM + C +H C+++W + +++CP C L ++
Sbjct: 893 DELDDKECLVCLEDMVKNQDTVKCSTCKRQYHTTCVQKWFKIKRICPTCNAGLLDE 948
>gi|3694627 (AC005764) R31343_1 [Homo sapiens]
Length = 420
Score = 38.7 bits (88), Expect = 0.046
Identities = 15/42 (35%), Positives = 29/42 (68%), Gaps = 5/42 (11%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAEQ--QQVCPLCRRSL 82
C IC ++ E G ++ C H++H +C+ W Q ++ CP+C++S+
Sbjct: 300 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 346
>gi|3033395 (AC004238) putative zinc-finger protein [Arabidopsis thaliana]
Length = 378
Score = 38.7 bits (88), Expect = 0.046
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Query: 207 CPICA----EDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
C +C +D L C H FH +C+ W + CPLCR L +Q
Sbjct: 135 CAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQ 184
>gi|2058263|dbj|BAA19795| (D76445) mkf-1 [Mus musculus]
Length = 683
Score = 38.7 bits (88), Expect = 0.046
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 4/39 (10%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRW-AEQQQVCPLCR 91
C +C E+ E G ++ CGH FH C+ W A + CP+CR
Sbjct: 619 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 661
>gi|2894297|emb|CAA17038| (AL021837) hypothetical protein [Schizosaccharomyces pombe]
Length = 676
Score = 38.7 bits (88), Expect = 0.046
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 17/39 (43%)
Query: 207 CPICAEDMEL---GXKII--------------CGHSFHVECLKRWAEQQQVCPLCR 91
CPIC + +EL G + C H +H +CL +W E + +CP+CR
Sbjct: 615 CPICMQPIELVSTGSTLNPASMMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVCR 670
>gi|4521317|dbj|BAA34912| (AB012161) KF-1 [Mus musculus]
Length = 683
Score = 38.7 bits (88), Expect = 0.046
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 4/39 (10%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRW-AEQQQVCPLCR 91
C +C E+ E G ++ CGH FH C+ W A + CP+CR
Sbjct: 619 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 661
>gi|4335724|gb|AAD17402| (AC006248) putative RING-H2 finger protein [Arabidopsis thaliana]
Length = 204
Score = 38.7 bits (88), Expect = 0.046
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 3/43 (6%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSLF 79
C IC + + G ++ C H FH CL W + CP CR ++
Sbjct: 158 CAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDIW 203
>gi|2257522|dbj|BAA21416| (AB004537) PAS4 Protein [Schizosaccharomyces pombe]
Length = 304
Score = 38.7 bits (88), Expect = 0.046
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
C +C E + CGH F C+ W ++ CPLCR
Sbjct: 186 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCR 224
>gi|3790579 (AF079178) RING-H2 finger protein RHA4a [Arabidopsis thaliana]
Length = 62
Score = 38.3 bits (87), Expect = 0.060
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 183 ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
EL +C H FH++C+ W CPLCR S+
Sbjct: 5 ELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 38
>gi|2039306 (U77844) mTRIP [Mus musculus]
Length = 470
Score = 38.3 bits (87), Expect = 0.060
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAE--QQQVCPLCR 91
C IC++ + + CGH+FH++CL +W E + CP CR
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR 50
>gi|3790585 (AF079181) RING-H2 finger protein RHF1a [Arabidopsis thaliana]
Length = 329
Score = 38.3 bits (87), Expect = 0.060
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Query: 216 EGTCPICAEDMEL---GXKIICGHSFHVECLKRWAEQQQVCPLC 94
+ C IC E L C H +H++C+ W+++ + CP+C
Sbjct: 1 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPIC 44
>gi|2662364|dbj|BAA23666| (D83327) DCRR1 [Homo sapiens]
Length = 1941
Score = 38.3 bits (87), Expect = 0.060
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Query: 210 TCPICAEDMELGXKII--CGHSFHVECLKRWAEQQQVCPLCR 91
+C IC E + + CGH +H C K+W + Q CP C+
Sbjct: 1872 SCEICHEVFKSKNVRVLKCGHKYHKGCFKQWLKGQSACPACQ 1913
>gi|1730008|sp|P53804|TTC3_HUMAN TETRATRICOPEPTIDE REPEAT DOMAIN 3 (TPR REPEAT PROTEIN D)
>gi|2136262|pir||JC5020 tetratricopeptide repeat protein
- human >gi|1304132|dbj|BAA11769| (D83077) TPRD [Homo
sapiens] >gi|1632762|dbj|BAA12301| (D84294) TPRDI [Homo
sapiens]
Length = 2025
Score = 38.3 bits (87), Expect = 0.060
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Query: 210 TCPICAEDMELGXKII--CGHSFHVECLKRWAEQQQVCPLCR 91
+C IC E + + CGH +H C K+W + Q CP C+
Sbjct: 1956 SCEICHEVFKSKNVRVLKCGHKYHKGCFKQWLKGQSACPACQ 1997
>gi|2244955|emb|CAB10376| (Z97340) hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 38.3 bits (87), Expect = 0.060
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 207 CPICA---EDMELGXKII-CGHSFHVECLKRWAEQQQVCPLCRRSL 82
C +C +D E G + C H+FHV C+ W CPLCR +
Sbjct: 282 CSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQI 327
>gi|1632764|dbj|BAA12302| (D84295) possible protein TPRDII [Homo sapiens]
Length = 1792
Score = 38.3 bits (87), Expect = 0.060
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Query: 210 TCPICAEDMELGXKII--CGHSFHVECLKRWAEQQQVCPLCR 91
+C IC E + + CGH +H C K+W + Q CP C+
Sbjct: 1723 SCEICHEVFKSKNVRVLKCGHKYHKGCFKQWLKGQSACPACQ 1764
>gi|1632766|dbj|BAA12303| (D84296) TPRDIII [Homo sapiens]
Length = 1715
Score = 38.3 bits (87), Expect = 0.060
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Query: 210 TCPICAEDMELGXKII--CGHSFHVECLKRWAEQQQVCPLCR 91
+C IC E + + CGH +H C K+W + Q CP C+
Sbjct: 1646 SCEICHEVFKSKNVRVLKCGHKYHKGCFKQWLKGQSACPACQ 1687
>gi|1399466 (U48717) zinc finger protein [Cryptosporidium parvum]
Length = 873
Score = 38.3 bits (87), Expect = 0.060
Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 9/80 (11%)
Query: 327 NIFRELVNT-----IKNLGKSIKNLKAFKEIKNFLDSC----EDVMEGTCPICAEDMELG 175
N+F VNT ++N K+ K KN +S + + E TCP+C + L
Sbjct: 31 NMFNITVNTEPYDVLENDIMKNKSRKVNNSSKNGFESTNISNKILSEFTCPVCLDYYMLP 90
Query: 174 XKIICGHSFHVECLKRWAEQQQVCPLCRR 88
I CGH+F C+ + CP+CR+
Sbjct: 91 VTIPCGHTFCRYCITHNRLLGKKCPVCRQ 119
>gi|2342720 (AC002341) hypothetical protein [Arabidopsis thaliana]
Length = 151
Score = 37.9 bits (86), Expect = 0.079
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 207 CPICAE--DMELGXKII--CGHSFHVECLKRWAEQQQVCPLCRR 88
CP+C + K++ C H F EC+ +W E CP+CRR
Sbjct: 91 CPVCLGLIPKNVVIKVLPNCMHMFDEECIGKWLESHATCPVCRR 134
>gi|4185133 (AC005724) putative zinc finger protein [Arabidopsis thaliana]
Length = 181
Score = 37.9 bits (86), Expect = 0.079
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 288 GKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII----CGHSFHVECLKRWA 121
G S + +K + K S E C +C + G CGH FH +C+ W
Sbjct: 83 GLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWL 142
Query: 120 EQQQVCPLCR 91
+ CP+CR
Sbjct: 143 LKASTCPICR 152
>gi|2501732|sp|Q05568|PEXA_YEAST PEROXISOME ASSEMBLY PROTEIN PEX10 (PEROXIN-10)
>gi|2132382|pir||S70125 PAS4 protein - yeast
(Saccharomyces cerevisiae) >gi|1230638 (U51030) Ydr265wp
[Saccharomyces cerevisiae]
Length = 337
Score = 37.9 bits (86), Expect = 0.079
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
C +C +M CGH F CL W +++ CPLCR+
Sbjct: 286 CILCLMNMSDPSCAPCGHLFCWSCLMSWCKERPECPLCRQ 325
>gi|3928094 (AC005770) putative zinc finger protein [Arabidopsis thaliana]
Length = 270
Score = 37.9 bits (86), Expect = 0.079
Identities = 13/39 (33%), Positives = 25/39 (63%), Gaps = 4/39 (10%)
Query: 210 TCPICAEDM----ELGXKIICGHSFHVECLKRWAEQQQVCPLC 94
+CPIC E++ +C H + + C+++W+ ++ CPLC
Sbjct: 38 SCPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLC 80
>gi|3805850|emb|CAA21470| (AL031986) putative protein [Arabidopsis thaliana]
Length = 269
Score = 37.9 bits (86), Expect = 0.079
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
Query: 192 EDMELGXKII----CGHSFHVECLKRWAEQQQVCPLCRRSL 82
+D +LG + C H FH+ C+ W + CP+CRR L
Sbjct: 229 QDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 269
>gi|4467120|emb|CAB37554| (AL035538) putative protein [Arabidopsis thaliana]
Length = 145
Score = 37.9 bits (86), Expect = 0.079
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 207 CPICAEDMELGXKII----CGHSFHVECLKRWAEQQQV-CPLCR 91
CPIC + E + C H FH+ C++ W + + CPLCR
Sbjct: 62 CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCR 105
>gi|93140|pir||A40505 early protein EP0 - suid herpesvirus 1 (strain Indiana-Funkhuser or
Becker)
Length = 410
Score = 37.9 bits (86), Expect = 0.079
Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Query: 207 CPICAEDMELGXKII-CGHSFHVECLKRWAEQQQVCPLCR 91
CPIC + + + C H F ++C++RW CPLC+
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTACPLCK 85
>gi|2388937|emb|CAB11672| (Z98977) hypothetical protein [Schizosaccharomyces pombe]
Length = 113
Score = 37.9 bits (86), Expect = 0.079
Identities = 16/53 (30%), Positives = 25/53 (46%)
Query: 246 NFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
+ +D C + T A++ + C H+FH C+ RW + VCPL R
Sbjct: 47 HIMDLCIECQANTDSAAAQECTVAWGT-CNHAFHFHCISRWLNTRNVCPLDNR 98
>gi|3790571 (AF078823) RING-H2 finger protein RHA2b [Arabidopsis thaliana]
Length = 147
Score = 37.5 bits (85), Expect = 0.10
Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGX---KIICGHSFHVECLKRWAEQQQV-CPLCRRSL 82
C +C ++ G K+ C H FH +CL+ W + CPLCR L
Sbjct: 74 CIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPL 119
>gi|2213613 (AC000103) F21J9.7 [Arabidopsis thaliana]
Length = 131
Score = 37.5 bits (85), Expect = 0.10
Identities = 22/57 (38%), Positives = 28/57 (48%), Gaps = 11/57 (19%)
Query: 252 IKNFLDSCEDVMEGT------CPICA----EDMELGXKIICGHSFHVECLKRW-AEQQQV 106
I F CE++ E C +C E+ E+ + C H FH CL W
Sbjct: 64 ITQFKSLCENIEEEEEEKGVECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTT 123
Query: 105 CPLCRRSL 82
CPLCR L
Sbjct: 124 CPLCRSIL 131
>gi|4567307|gb|AAD23718|AC005956_7 (AC005956) putative zinc finger protein [Arabidopsis thaliana]
Length = 217
Score = 37.5 bits (85), Expect = 0.10
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 4/45 (8%)
Query: 225 DVMEGTCPICAEDMEL--GXKII--CGHSFHVECLKRWAEQQQVCPLCR 91
DV C +C +E +++ C H FHV C+ W Q CP+CR
Sbjct: 94 DVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCR 142
>gi|4510378|gb|AAD21466| (AC007017) hypothetical protein [Arabidopsis thaliana]
Length = 180
Score = 37.5 bits (85), Expect = 0.10
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 207 CPICAEDMELGXKII-----CGHSFHVECLKRWAEQQQVCPLCRRS 85
C IC D + G ++ C H FH++C+ W CP+CR S
Sbjct: 110 CAICLGDYK-GKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTS 154
>gi|1311667|bbs|175635 (S80988) nuclear factor 7=dorsal-ventral body axis developmental
regulator [Xenopus laevis, oocytes, Peptide, 610 aa]
[Xenopus laevis]
Length = 610
Score = 37.5 bits (85), Expect = 0.10
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECL-KRWAEQQQ-VCPLCRRSL 82
E TCP+C E + + CGH+F C+ K W Q CP C+ S+
Sbjct: 143 ELTCPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESI 189
>gi|1770499|emb|CAA69165| (Y07828) put. ring protein [Homo sapiens]
Length = 236
Score = 37.5 bits (85), Expect = 0.10
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQ---QVCPLCRRSLFED 73
E CPIC + ++ I CGH+F +C+ + E CPLC+ S+ D
Sbjct: 13 EVICPICLDILQKPVTIDCGHNFCPQCITQIGETSCGFFKCPLCKTSVRRD 63
>gi|2104444|emb|CAB08767| (Z95396) zinc finger protein [Schizosaccharomyces pombe]
Length = 372
Score = 37.5 bits (85), Expect = 0.10
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 4/38 (10%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRW-AEQQQVCPLC 94
C IC E G K++ C H FH C+ +W + + CP C
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>gi|4262223|gb|AAD14516| (AC006200) RING-H2 finger protein RHA2b [Arabidopsis thaliana]
Length = 173
Score = 37.5 bits (85), Expect = 0.10
Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGX---KIICGHSFHVECLKRWAEQQQV-CPLCRRSL 82
C +C ++ G K+ C H FH +CL+ W + CPLCR L
Sbjct: 100 CIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPL 145
>gi|338490 (M62800) 52-kD SS-A/Ro autoantigen [Homo sapiens]
>gi|4507227|ref|NP_003132.1|pSSA1| Sjogren syndrome
antigen A1 (52kD, ribonucleoprotein autoantigen SS-A/Ro)
Length = 475
Score = 37.1 bits (84), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKRWAE-QQQVCPLCRR 88
E TCPIC + I CGHSF EC+ + + VC +CR+
Sbjct: 13 EVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCAVCRQ 56
>gi|3236261 (AC004684) putative zinc finger protein [Arabidopsis thaliana]
Length = 630
Score = 37.1 bits (84), Expect = 0.14
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 207 CPIC----AEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
C +C + EL C H+FHV C++ W + CP+CR
Sbjct: 142 CSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICR 184
>gi|3608146 (AC005314) unknown protein [Arabidopsis thaliana]
Length = 234
Score = 37.1 bits (84), Expect = 0.14
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKI----ICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C IC + + +C H FH C+ W E + CP+CR L
Sbjct: 83 CAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCEL 128
>gi|1841551 (U89336) unknown [Homo sapiens]
Length = 180
Score = 37.1 bits (84), Expect = 0.14
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAE---QQQVCPLCRRSLFEDQ 70
C IC E +CGH + CL +W E ++Q CP+C+ + ++
Sbjct: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREK 75
>gi|2213626 (AC000103) F21J9.18 [Arabidopsis thaliana]
Length = 206
Score = 37.1 bits (84), Expect = 0.14
Identities = 16/58 (27%), Positives = 27/58 (45%)
Query: 255 EIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
E +++S + E C IC E C H+ ++C + W + + CP CR S+
Sbjct: 94 EGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSI 151
>gi|2642154 (AC003000) unknown protein [Arabidopsis thaliana] >gi|3790595
(AF079186) RING-H2 finger protein RHC2a [Arabidopsis
thaliana]
Length = 401
Score = 37.1 bits (84), Expect = 0.14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 207 CPICAEDMEL---GXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C +C E+ L ++ C H +H +C+ W + CP+CR L
Sbjct: 201 CAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHEL 245
>gi|2435518 (AF024504) contains similarity to C3HC4-type zinc fingers
[Arabidopsis thaliana]
Length = 292
Score = 37.1 bits (84), Expect = 0.14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 225 DVMEGT--CPICAEDMELGXKII----CGHSFHVECLKRWAEQQQVCPL 97
D E T C +C +D +LG + C H FH+ C+ W + CP+
Sbjct: 201 DASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPI 249
>gi|4539459|emb|CAB39939| (AL049500) putative protein [Arabidopsis thaliana]
Length = 419
Score = 37.1 bits (84), Expect = 0.14
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSLFED 73
C IC + E G ++ C H FH C+ +W CPLC+ ++ ++
Sbjct: 367 CCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKN 414
>gi|124138|sp|P29129|ICP0_PRVIF TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0 (EARLY PROTEIN 0) (EP0)
>gi|334048 (M57504) EPO [Pseudorabies virus]
Length = 410
Score = 37.1 bits (84), Expect = 0.14
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 207 CPICAEDMELGXKII-CGHSFHVECLKRWAEQQQVCPLC 94
CPIC + + + C H F ++C++RW CPLC
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTACPLC 84
>gi|1707068 (U80449) contains similarity to a C3HC4 zinc finger (PS:PS00518)
[Caenorhabditis elegans]
Length = 112
Score = 36.7 bits (83), Expect = 0.18
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 162 CGHSFHVECLKRWAEQQQVCPLCRR 88
C HSFH C+ +W Q CPLC++
Sbjct: 79 CNHSFHHCCMTQWIRQNNRCPLCQK 103
>gi|4049767 (AF063866) ORF MSV251 hypothetical protein containing C3H2C3 RING
finger [Melanoplus sanguinipes entomopoxvirus]
Length = 329
Score = 36.7 bits (83), Expect = 0.18
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 330 FNIFRELV-NTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGH 154
FN E++ N IKN NLK + N + C IC D + K IC H
Sbjct: 242 FNEHNEIIINGIKNYIDRF-NLKKIEVFDN---------DDICSICL-DKGILYKTICNH 290
Query: 153 SFHVECLKRWAEQQQVCPLCRRSL 82
+FH ECL +CP C++++
Sbjct: 291 TFHKECLNN--INNNLCPYCKQNI 312
>gi|2501735|sp|Q09463|YQ57_CAEEL HYPOTHETICAL 24.9 KD PROTEIN C16C10.7 IN CHROMOSOME III
>gi|3874385|emb|CAA86745| (Z46787) similar to Zinc
finger, C3HC4 type (RING finger); cDNA EST yk237a6.3
comes from this gene; cDNA EST yk237a6.5 comes from this
gene; cDNA EST yk390f8.3 comes from this gene; cDNA EST
yk390f8.5 comes from this gene [Caen...
Length = 235
Score = 36.7 bits (83), Expect = 0.18
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAE---QQQVCPLCRRSL 82
C IC + + +CGH F CL +W + QVCP+C+ ++
Sbjct: 26 CNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAI 70
>gi|2501720|sp|Q95153|BRC1_CANFA BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN HOMOLOG >gi|1620568
(U50709) similar to the human breast and ovarian cancer
susceptibility gene BRCA1 product [Canis familiaris]
Length = 1878
Score = 36.7 bits (83), Expect = 0.18
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L++ + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 EEVQNVLNAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 DI 68
>gi|2673908 (AC002561) hypothetical protein [Arabidopsis thaliana]
Length = 506
Score = 36.7 bits (83), Expect = 0.18
Identities = 17/41 (41%), Positives = 23/41 (55%), Gaps = 5/41 (12%)
Query: 210 TCPICAEDMELGXK----IICGHSFHVECLKRWAEQQ-QVCPLCRR 88
TCPIC E ++ +C HSF C +W QVC LC++
Sbjct: 173 TCPICLERLDPDTSGIVSTLCDHSFQCSCTSKWTYLSCQVCRLCQQ 218
>gi|3133097|emb|CAA19023| (AL023554) zinc finger protein [Schizosaccharomyces pombe]
Length = 268
Score = 36.7 bits (83), Expect = 0.18
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 207 CPICAEDMELGXKII-CGHS-FHVECLKRWAEQQQVCPLCRR 88
C IC + L ++ CGH F C+ RW +Q CP+C+R
Sbjct: 21 CVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKR 62
>gi|549667|sp|P36096|YKD4_YEAST HYPOTHETICAL 87.9 KD PROTEIN PRECURSOR IN PTM-IRX1 INTERGENIC
REGION >gi|539155|pir||S37855 hypothetical protein
YKL034w precursor - yeast (Saccharomyces cerevisiae)
>gi|486044|emb|CAA81869| (Z28034) ORF YKL034w
[Saccharomyces cerevisiae]
Length = 758
Score = 36.4 bits (82), Expect = 0.23
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 162 CGHSFHVECLKRWAEQQQVCPLCRRSL 82
C H FH CL+ W + CP+CR L
Sbjct: 729 CNHVFHTSCLENWMNYKLQCPVCRSPL 755
>gi|2564951 (AF030001) unknown [Mus musculus]
Length = 180
Score = 36.4 bits (82), Expect = 0.23
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAE---QQQVCPLCRRSLFEDQ 70
C IC E +CGH + CL +W E +Q CP+C+ + ++
Sbjct: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREK 75
>gi|868148 (U22375) ORF2 [Feldmannia sp. virus]
Length = 673
Score = 36.4 bits (82), Expect = 0.23
Identities = 18/43 (41%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 219 MEGTCPIC----AEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
M CP+C A D E+ C H F +C W +Q CPLCR
Sbjct: 437 MRTECPVCLQHFAPDKEVCIVGPCWHVFCKDCSTSWLQQGANCPLCR 483
>gi|3329611 (AF078783) contains similarity to C3HC4-type zinc fingers (Pfam;
zf-C3HC4.hmm, score; 34.08); most similar to drosophila
goliath protein (SW: Q06003) [Caenorhabditis elegans]
Length = 473
Score = 36.4 bits (82), Expect = 0.23
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 219 MEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
++ C +C + +L I C H +H C+ W + + CP+C+ + +
Sbjct: 223 LQSDCAVCLDPYQLQDVIRLLPCKHIYHKSCIDPWLLEHRTCPMCKNDILK 273
>gi|2695691|gb|AAC36493| (AF036760) BRCA1 [Rattus norvegicus]
Length = 1817
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L + + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 QEVQNVLHAMQKILE--CPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 EI 68
>gi|1001959 (U19107) ZNF127 [Homo sapiens]
Length = 507
Score = 36.0 bits (81), Expect = 0.30
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 16/43 (37%)
Query: 219 MEGTCPICAE---------DMELGXKIICGHSFHVECLKRWAEQQQV-------CPLCR 91
M+ C IC E D G C HSF + C++RW +Q CP CR
Sbjct: 307 MDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCR 365
>gi|1498737 (U64805) Brca1-delta11b [Homo sapiens]
Length = 759
Score = 36.0 bits (81), Expect = 0.30
Identities = 17/59 (28%), Positives = 34/59 (56%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N +++ + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 EEVQNVINAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 DI 68
>gi|1699382|bbs|178646 (S82500) Brca1 [rats, WKY, testis, Peptide Partial, 215 aa] [Rattus
sp.] >gi|1773281 (U60523) Brca1 gene product [Rattus
norvegicus]
Length = 215
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L + + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 2 QEVQNVLHAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 59
Query: 87 SL 82
+
Sbjct: 60 EI 61
>gi|3033394 (AC004238) putative zinc-finger protein [Arabidopsis thaliana]
Length = 302
Score = 36.0 bits (81), Expect = 0.30
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 207 CPICAEDME----LGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C +C + E L C H FH +C+ W CPLCR L
Sbjct: 96 CAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDL 141
>gi|728984|sp|P38398|BRC1_HUMAN BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN >gi|555932 (U14680)
influences susceptibility to breast and ovarian cancer
[Homo sapiens] >gi|1698399 (L78833) BRCA1 [Homo sapiens]
>gi|4502449|ref|NP_000049.1|pBRCA1| breast cancer 1,
early onset
Length = 1863
Score = 36.0 bits (81), Expect = 0.30
Identities = 17/59 (28%), Positives = 34/59 (56%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N +++ + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 EEVQNVINAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 DI 68
>gi|627392|pir||A54652 breast/ovarian cancer susceptibility protein BRCA1 - human
Length = 1863
Score = 36.0 bits (81), Expect = 0.30
Identities = 17/59 (28%), Positives = 34/59 (56%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N +++ + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 EEVQNVINAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 DI 68
>gi|969172 (U32446) breast/ovarian cancer susceptibility protein homolog [Mus
musculus]
Length = 1812
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L + + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 QEVQNVLHAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 EI 68
>gi|2137173|pir||I49350 breast/ovarian cancer susceptibility homolog - mouse >gi|988214
(U31625) breast/ovarian cancer susceptibility homolog
[Mus musculus]
Length = 1812
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L + + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 QEVQNVLHAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 EI 68
>gi|2507557|sp|P48754|BRC1_MOUSE BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN HOMOLOG >gi|1040961
(U35641) human BRCA1 homolog; Method: conceptual
translation supplied by author [Mus musculus]
Length = 1812
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L + + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 QEVQNVLHAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 EI 68
>gi|1049263 (U36475) breast and ovarian cancer susceptibility protein [Mus
musculus] >gi|1585892|prf||2202221A Brca1 gene [Mus
musculus]
Length = 1812
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L + + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 QEVQNVLHAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 EI 68
>gi|4097808 (U68174) Brca1 [Mus musculus]
Length = 1812
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQ---VCPLCRR 88
+E++N L + + ++E CPIC E ++ C H F C+ + Q++ CPLC+
Sbjct: 9 QEVQNVLHAMQKILE--CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Query: 87 SL 82
+
Sbjct: 67 EI 68
>gi|586501|sp|P38239|YBR2_YEAST HYPOTHETICAL 13.2 KD PROTEIN IN ORC2-TIP1 INTERGENIC REGION
>gi|626504|pir||S45920 hypothetical protein YBR062c -
yeast (Saccharomyces cerevisiae)
>gi|536305|emb|CAA85005| (Z35931) ORF YBR062c
[Saccharomyces cerevisiae]
Length = 115
Score = 35.6 bits (80), Expect = 0.40
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 162 CGHSFHVECLKRWAEQQQVCPLCR 91
C H F +ECL W + CPLCR
Sbjct: 65 CHHKFDLECLSVWLSRSTTCPLCR 88
>gi|1843401|dbj|BAA19122| (AB000468) zinc finger protein [Homo sapiens] >gi|2565164 (U95140)
RNF4 [Homo sapiens] >gi|4506561|ref|NP_002929.1|pRNF4|
ring finger protein 4
Length = 190
Score = 35.6 bits (80), Expect = 0.40
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 210 TCPIC----AEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSL 82
+CPIC +E ++ G I+ CGH F +CL+ + CP CR+ +
Sbjct: 131 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
>gi|340026 (M16029) tyrosine kinase [Homo sapiens]
Length = 805
Score = 35.6 bits (80), Expect = 0.40
Identities = 18/44 (40%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKR-W--AEQQQVCPLCRRS 85
E TCP+C + + CGH+ CL R W AE CP CR +
Sbjct: 17 ETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRET 63
>gi|132517|sp|P14373|RFP_HUMAN ZINC-FINGER PROTEIN RFP (RET FINGER PROTEIN) >gi|68992|pir||TVHURF
transforming protein rfp - human >gi|337372 (J03407) rfp
transforming protein [Homo sapiens]
Length = 513
Score = 35.6 bits (80), Expect = 0.40
Identities = 18/44 (40%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKR-W--AEQQQVCPLCRRS 85
E TCP+C + + CGH+ CL R W AE CP CR +
Sbjct: 13 ETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRET 59
>gi|675507 (L26987) par-2 [Caenorhabditis elegans]
Length = 627
Score = 35.6 bits (80), Expect = 0.40
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
CP+C + + + CGHS+ C++R + C +C+
Sbjct: 56 CPLCDQLFDRPVMVTCGHSYCEPCIERHTRDTRACVICK 94
>gi|2132017|pir||S66830 hypothetical protein YOL133w - yeast (Saccharomyces cerevisiae)
>gi|1420024|emb|CAA99155| (Z74876) ORF YOL133w
[Saccharomyces cerevisiae] >gi|1628443|emb|CAA64737|
(X95465) ORF [Saccharomyces cerevisiae]
Length = 121
Score = 35.6 bits (80), Expect = 0.40
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 165 ICGHSFHVECLKRWAEQQQVCPL 97
+C H+FH+ C+ +W + + CPL
Sbjct: 87 VCNHAFHLHCINKWIKTRDACPL 109
>gi|322492|pir||A44272 photomorphogenesis repressor COP1 - Arabidopsis thaliana
Length = 658
Score = 35.6 bits (80), Expect = 0.40
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
CPIC + ++ CGHSF C+ + CP C + L +Q
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQ 97
>gi|4566495|gb|AAD23379|AF098300_1 (AF098300) topoisomerase I-binding RS protein [Homo sapiens]
Length = 1045
Score = 35.6 bits (80), Expect = 0.40
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 216 EGTCPICAEDME-LGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
+ CPIC + + + C H F C++ W++ + CPLC++
Sbjct: 100 DSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQ 143
>gi|462193|sp|Q06003|GOLI_DROME GOLIATH PROTEIN (G1 PROTEIN) >gi|483296|pir||JC1495 regulatory
protein G1 - fruit fly (Drosophila melanogaster)
>gi|157535 (M97204) goliath protein [Drosophila
melanogaster]
Length = 284
Score = 35.6 bits (80), Expect = 0.40
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 228 EDVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCR 91
+D+ C IC E + I C H FH C+ W + + CP+C+
Sbjct: 119 KDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCK 167
>gi|3342562 (AF077599) hypothetical SBBI03 protein [Homo sapiens]
Length = 317
Score = 35.6 bits (80), Expect = 0.40
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 207 CPICAEDMELGXKII-CGHSFHVECLKRWAEQQQVCPLCR 91
CPIC+ +E + C H+F C+ +W QQQ CP+ R
Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDR 57
>gi|3510468 (AF022081) small nuclear RING finger protein [Rattus norvegicus]
Length = 194
Score = 35.6 bits (80), Expect = 0.40
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 210 TCPIC----AEDMELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRSL 82
+CPIC +E ++ G I+ CGH F +CL+ + CP CR+ +
Sbjct: 135 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 184
>gi|1169012|sp|P43254|COP1_ARATH COP1 REGULATORY PROTEIN (FUSCA PROTEIN FUS1) >gi|402685 (L24437)
regulatory protein [Arabidopsis thaliana]
Length = 675
Score = 35.6 bits (80), Expect = 0.40
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
CPIC + ++ CGHSF C+ + CP C + L +Q
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQ 97
>gi|2702280 (AC003033) photomorphogenesis repressor COP1 [Arabidopsis thaliana]
Length = 675
Score = 35.6 bits (80), Expect = 0.40
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
CPIC + ++ CGHSF C+ + CP C + L +Q
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQ 97
>gi|2736517 (AF039052) contains similarity to helicases [Caenorhabditis
elegans]
Length = 869
Score = 35.6 bits (80), Expect = 0.40
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 315 ELVNTIKNLGKSIKNLKAFKEI-KNFLDS-CEDVMEGTCPICAEDMELGXKIICGHSFHV 142
E+ I+++ K +K L+ + K LD ED+ + CPIC ++ CGH
Sbjct: 557 EIKVVIESVRKDVKELRYLMNLMKKQLDGETEDIFD--CPICCASIDCFMVFTCGHRICQ 614
Query: 141 ECLKRW---------AEQQQVCPLCR 91
C ++ AE CP CR
Sbjct: 615 NCFEKMRALQRRAGSAEDVVACPTCR 640
>gi|3876716|emb|CAA86328| (Z46242) similar to Zinc finger, C3HC4 type (RING finger)
[Caenorhabditis elegans]
Length = 135
Score = 35.2 bits (79), Expect = 0.52
Identities = 26/75 (34%), Positives = 39/75 (51%), Gaps = 18/75 (24%)
Query: 312 LVNTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKI----------- 166
L+ T + ++K L E K +L ED TC IC + E +
Sbjct: 42 LLKTNTRMSITVKKLHVCGEWK-WLQGGED----TCGICRMEFESACNMCKFPGDDCPLV 96
Query: 165 --ICGHSFHVECLKRWA-----EQQQVCPLCRR 88
IC H+FH C+ +W + + CPLCR+
Sbjct: 97 LGICRHAFHRHCIDKWIAAPTNQPRAQCPLCRQ 129
>gi|483212|pir||D48560 immediate-early protein IE110 - human herpesvirus 1 (strain HFEM)
(fragment)
Length = 315
Score = 35.2 bits (79), Expect = 0.52
Identities = 13/42 (30%), Positives = 22/42 (51%), Gaps = 3/42 (7%)
Query: 207 CPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C +C +++ + C H F + C+K W + + CPLC L
Sbjct: 97 CAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNAKL 141
>gi|124134|sp|P08393|ICP0_HSV11 TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0 (IMMEDIATE-EARLY PROTEIN
IE110) (VMW110) (ALPHA-0 PROTEIN) >gi|73649|pir||EDBE11
immediate-early protein IE110 - human herpesvirus 1
(strain 17) >gi|59500|emb|CAA32336| (X14112) RL2 [human
herpesvirus 1] >gi|59557|emb|CAA32293| (X14112)
immediate early protein; modulator of cell state and
gene expression [human herpesvirus 1]
>gi|59833|emb|CAA28285| (X04614) IE110 [human
herpesvirus 1] >gi|2626941|dbj|BAA23426| (D00374)
immediate early transcriptional activator IE110 [human
herpesvirus 1]
Length = 775
Score = 35.2 bits (79), Expect = 0.52
Identities = 13/42 (30%), Positives = 22/42 (51%), Gaps = 3/42 (7%)
Query: 207 CPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVCPLCRRSL 82
C +C +++ + C H F + C+K W + + CPLC L
Sbjct: 116 CAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNAKL 160
>gi|1655930 (U66564) RUSH-1alpha [Oryctolagus cuniculus]
Length = 1005
Score = 35.2 bits (79), Expect = 0.52
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 312 LVNTIKNLGKSIKNL------KAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHS 151
L NT+ + G S + K K++K L S D C IC + + + C H
Sbjct: 719 LTNTVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDE---ECAICLDSLTVPVITHCAHV 775
Query: 150 FHVECLKRWAEQQQ---VCPLCRRSLFED 73
F C+ + + +Q CPLCR + D
Sbjct: 776 FCKPCICQCIQNEQPHAKCPLCRNDIHGD 804
>gi|3193334 (AF069299) contains similarity to Lotus japonicus RING-finger
protein (GB:Z36750) [Arabidopsis thaliana]
Length = 200
Score = 35.2 bits (79), Expect = 0.52
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 321 FRELVNTIKNLGKSIKNLKAFKEIKNFLDSC---------EDVMEGTCPICAEDMELGX- 172
+ +L+ N+G +KA +D C + + + C IC + +
Sbjct: 123 YEQLLQLCNNMGYENSGVKASN-----IDRCLRNTKPSEFQSLADKICCICQDGFQKRAG 177
Query: 171 --KIICGHSFHVECLKRW 124
K+ CGH+FHV C+K W
Sbjct: 178 VGKLNCGHNFHVNCVKPW 195
>gi|4337205|gb|AAD18119| (AC006403) hypothetical protein [Arabidopsis thaliana]
Length = 198
Score = 35.2 bits (79), Expect = 0.52
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 210 TCPICAEDMELGXKII----CGHSFHVECLKRWA-EQQQVCPLCRR 88
TC IC E+M C H +H C+ +W CPLCR+
Sbjct: 149 TCAICLENMSRSENYCQMPYCKHCYHEGCVTKWVIGHNNSCPLCRK 194
>gi|3850134|emb|CAA21935| (AL033391) zinc finger protein [Candida albicans]
Length = 378
Score = 35.2 bits (79), Expect = 0.52
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
C IC + + + C H++ +C++ + + CPLC+ +FE
Sbjct: 29 CYICKDLLNAPVRTQCDHTYCSQCIREFLLRDNRCPLCKTEVFE 72
>gi|3152606 (AC004482) putative ring zinc finger protein [Arabidopsis thaliana]
Length = 227
Score = 35.2 bits (79), Expect = 0.52
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWA---EQQQVCPLCRRSLFEDQ 70
C IC E + +CGH F CL RW Q CP+C+ + +D+
Sbjct: 28 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDK 76
>gi|3928084 (AC005770) retrotransposon-like protein [Arabidopsis thaliana]
Length = 689
Score = 35.2 bits (79), Expect = 0.52
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 210 TCPICAEDMELGX-----KIICGHSFHVECLKRWAEQ-QQVCPLCR 91
TC IC M+ G C HSFH C+ + QVCP+CR
Sbjct: 68 TCSICLNKMKEGGGHALFTAECSHSFHFHCIASNVKHGNQVCPVCR 113
>gi|480989|pir||S37583 finger protein rfp - mouse (fragment) >gi|406748|emb|CAA53092|
(X75343) zinc finger protein [Mus musculus]
Length = 506
Score = 35.2 bits (79), Expect = 0.52
Identities = 18/44 (40%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKR-W--AEQQQVCPLCRRS 85
E TCP+C + + CGH+ CL R W AE CP CR +
Sbjct: 6 ETTCPVCLQYFVEPMMLDCGHNICCACLARCWGAAETNVSCPQCRET 52
>gi|2131424|pir||S61199 hypothetical protein YDR313c - yeast (Saccharomyces cerevisiae)
>gi|849227 (U28374) YDR313C gene product [Saccharomyces
cerevisiae]
Length = 286
Score = 35.2 bits (79), Expect = 0.52
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 306 NTIKNLGKSIKNLKAFKE---IKNFLDSCEDVMEGTCPICAEDMELGXKI---ICGHSFH 145
NT S+K AF+ + + D CPIC E+ME G K+ C FH
Sbjct: 189 NTSDAADDSVKESPAFQNRMLVYKISPNTTDNAIKECPICFENMEPGEKVGRLECLCVFH 248
Query: 144 VECLKRW 124
+C+K W
Sbjct: 249 YKCIKNW 255
>gi|731505|sp|P40072|YEU6_YEAST HYPOTHETICAL 30.8 KD PROTEIN IN SPR6-RPL17B INTERGENIC REGION
>gi|1077698|pir||S50619 hypothetical protein YER116c -
yeast (Saccharomyces cerevisiae) >gi|603355 (U18916)
Yer116cp [Saccharomyces cerevisiae]
Length = 274
Score = 35.2 bits (79), Expect = 0.52
Identities = 18/43 (41%), Positives = 21/43 (47%), Gaps = 6/43 (13%)
Query: 207 CPICAEDMELGXKIICGHSFHVECL------KRWAEQQQVCPLCRRSLF 79
CPIC E E +CGH F CL R Q C LCR ++
Sbjct: 206 CPICFEPPETALMTLCGHVFCCPCLFQMVNSSRTCRQFGHCALCRSKVY 254
>gi|1655932 (U66565) RUSH-1beta [Oryctolagus cuniculus]
Length = 836
Score = 35.2 bits (79), Expect = 0.52
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 312 LVNTIKNLGKSIKNL------KAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHS 151
L NT+ + G S + K K++K L S D C IC + + + C H
Sbjct: 719 LTNTVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDE---ECAICLDSLTVPVITHCAHV 775
Query: 150 FHVECLKRWAEQQQ---VCPLCRRSLFED 73
F C+ + + +Q CPLCR + D
Sbjct: 776 FCKPCICQCIQNEQPHAKCPLCRNDIHGD 804
>gi|3513737 (AF080118) contains similarity to C3HC4-type zinc fingers
(Pfam:zf-C3HC4.hmm, score: 34.87) [Arabidopsis thaliana]
Length = 118
Score = 35.2 bits (79), Expect = 0.52
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 207 CPICAEDM-ELGXKIICGHSFHVECLKRWAEQQQVCPLCRR 88
C IC + + + G C H F EC+ W+ +CPLC+R
Sbjct: 31 CGICMDIIIDRGVLDCCQHWFCFECIDNWSTIMNLCPLCQR 71
>gi|3764009|emb|CAA15602| (AL008970) predicted using hexExon; MAL3P4.11 (PFC0510w),
Zinc-finger (C3HC4) protein, len: 837 aa [Plasmodium
falciparum]
Length = 836
Score = 35.2 bits (79), Expect = 0.52
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKIICG----HSFHVECLKRWAEQQQVCPLCRRSL 82
C IC D+ L C H FH +CL++W + + CP CR L
Sbjct: 787 CVICMYDIVLKPNKYCVTPCYHIFHEKCLQQWMDIKLECPTCRGPL 832
>gi|2501724|sp|Q62158|RFP_MOUSE ZINC-FINGER PROTEIN RFP (RET FINGER PROTEIN) >gi|1161122 (L46855)
ret finger protein [Mus musculus]
Length = 522
Score = 35.2 bits (79), Expect = 0.52
Identities = 18/44 (40%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKR-W--AEQQQVCPLCRRS 85
E TCP+C + + CGH+ CL R W AE CP CR +
Sbjct: 22 ETTCPVCLQYFVEPMMLDCGHNICCACLARCWGAAETNVSCPQCRET 68
>gi|115855|sp|P22681|CBL_HUMAN PROTO-ONCOGENE C-CBL >gi|280867|pir||A43817 transforming protein
(cbl) - human >gi|29731|emb|CAA40393| (X57110) c-cbl
protein [Homo sapiens]
Length = 906
Score = 34.8 bits (78), Expect = 0.68
Identities = 17/39 (43%), Positives = 20/39 (50%), Gaps = 1/39 (2%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQ-QVCPLCR 91
C ICAE+ + CGH CL W E + Q CP CR
Sbjct: 381 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 420
>gi|3702333 (AC005397) hypothetical protein [Arabidopsis thaliana]
Length = 214
Score = 34.8 bits (78), Expect = 0.68
Identities = 18/42 (42%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Query: 210 TCPICA----EDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRS 85
TC IC E L C H FH+ CL W + CP+CR S
Sbjct: 137 TCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNS 182
>gi|280641|pir||A28009 43K postsynaptic membrane protein - Pacific electric ray
Length = 405
Score = 34.8 bits (78), Expect = 0.68
Identities = 18/49 (36%), Positives = 27/49 (54%), Gaps = 4/49 (8%)
Query: 231 CEDVMEGTCPICAEDM----ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRS 85
C + ME TC +C E + + C H FH++CL+ + CP C+RS
Sbjct: 348 CMEDMELTCGLCGESIGDQNSQLQALPCSHLFHLKCLQ--TNGNRGCPNCKRS 398
>gi|1658307|emb|CAA86572| (Z46606) helicase-like transcription factor [Homo sapiens]
Length = 887
Score = 34.4 bits (77), Expect = 0.90
Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Query: 267 KAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQV---CPL 97
K +++K L S D C IC + + + C H F C+ + + +Q CPL
Sbjct: 621 KLIRKMKLILSSGSDE---ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPL 677
Query: 96 CRRSLFED 73
CR + ED
Sbjct: 678 CRNDIHED 685
>gi|4090943 (AF029984) COP1 homolog [Lycopersicon esculentum]
Length = 677
Score = 34.4 bits (77), Expect = 0.90
Identities = 15/46 (32%), Positives = 20/46 (42%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFEDQ 70
CPIC + ++ CGHSF C+ + CP C L Q
Sbjct: 51 CPICMQIIKDAFLTACGHSFCYMCIVTHLHNKSDCPCCSHYLTTSQ 96
>gi|1946989 (AF000193) short region of weak similarity to rat SH3 domain
binging protein (GB:U25281) [Caenorhabditis elegans]
Length = 715
Score = 34.4 bits (77), Expect = 0.90
Identities = 17/35 (48%), Positives = 25/35 (70%)
Query: 318 RELVNTIKNLGKSIKNLKAFKEIKNFLDSCEDVME 214
RE +N++KNL KSIK+L FKE++ F+ S + E
Sbjct: 369 RESLNSLKNLSKSIKSL--FKEVEQFIGSVNGLKE 401
>gi|1082441|pir||A56095 HIP116 protein - human >gi|531196 (L34673) ATPase [Homo sapiens]
>gi|4507071|ref|NP_003062.1|pSMARCA3| SWI/SNF related,
matrix associated, actin dependent regulator of
chromatin, subfamily a, member 3
Length = 1009
Score = 34.4 bits (77), Expect = 0.90
Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Query: 267 KAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQV---CPL 97
K +++K L S D C IC + + + C H F C+ + + +Q CPL
Sbjct: 743 KLIRKMKLILSSGSDE---ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPL 799
Query: 96 CRRSLFED 73
CR + ED
Sbjct: 800 CRNDIHED 807
>gi|1082438|pir||S49618 helicase-like transcription factor - human >gi|575251|emb|CAA86571|
(Z46606) helicase-like transcription factor [Homo
sapiens]
Length = 1009
Score = 34.4 bits (77), Expect = 0.90
Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Query: 267 KAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQV---CPL 97
K +++K L S D C IC + + + C H F C+ + + +Q CPL
Sbjct: 743 KLIRKMKLILSSGSDE---ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPL 799
Query: 96 CRRSLFED 73
CR + ED
Sbjct: 800 CRNDIHED 807
>gi|1730767|sp|P53924|YNL6_YEAST HYPOTHETICAL 57.6 KD PROTEIN IN MLS1-RPC19 INTERGENIC REGION
>gi|2131891|pir||S63057 hypothetical protein YNL116w -
yeast (Saccharomyces cerevisiae)
>gi|1183957|emb|CAA93391| (Z69382) Similar to gene HR5
from yeast chromosome VIII [Saccharomyces cerevisiae]
>gi|1302041|emb|CAA95996| (Z71392) ORF YNL116w
[Saccharomyces cerevisiae]
Length = 522
Score = 34.4 bits (77), Expect = 0.90
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 273 NLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII---CGHSFHVECLKR---WAEQQ 112
N +A + ++N + E C IC ++ I C HS+H C++R + Q
Sbjct: 411 NKEALQRLQNLQKLTTGIEEEDCSICLCKIKPCQAIFISPCAHSWHFRCVRRLVMLSYPQ 470
Query: 111 QVCPLCRRS 85
VCP CR S
Sbjct: 471 FVCPNCRSS 479
>gi|4567308|gb|AAD23719|AC005956_8 (AC005956) putative zinc finger protein [Arabidopsis thaliana]
Length = 236
Score = 34.4 bits (77), Expect = 0.90
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 162 CGHSFHVECLKRWAEQQQVCPLCR 91
C H FHV+C+ W CP+CR
Sbjct: 127 CKHIFHVDCVDTWLTTCSTCPVCR 150
>gi|4204282 (AC004146) Hypothetical protein [Arabidopsis thaliana]
Length = 453
Score = 34.4 bits (77), Expect = 0.90
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
Query: 210 TCPICAEDMELGXKII-CGHSFHVECLKRWAE------QQQVCPLCR 91
+C IC + I+ CGH F C+++WA+ ++ CPLC+
Sbjct: 299 SCIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCK 345
>gi|2781353 (AC003113) F24O1.9 [Arabidopsis thaliana]
Length = 204
Score = 34.4 bits (77), Expect = 0.90
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 237 DSCEDVME--GTCPICAEDM--ELGXKII-CGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
D C+ G P+C M E G I CGH++ C + + CPLC RS+F+
Sbjct: 141 DGCDSTTTWLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFD 199
>gi|2997696 (AF053958) unknown [Drosophila heteroneura]
Length = 131
Score = 34.4 bits (77), Expect = 0.90
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRW---AEQQQVCPLCRRSLFEDQ 70
C IC + + +CGH F CL +W +++CP+C+ ++ +D+
Sbjct: 7 CNICLDTAKDAVVSMCGHLFCWPCLHQWLLTRPNRKLCPVCKAAVDKDK 55
>gi|3123206|sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN >gi|2832850|emb|CAA16809| (AL021726) EG:171E4.1
[Drosophila melanogaster]
Length = 1002
Score = 34.0 bits (76), Expect = 1.2
Identities = 23/77 (29%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Query: 318 RELVNTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXK----IICGHS 151
RE+ T + ++ L+ ++ ++S + TC IC +M L K ICGH
Sbjct: 853 REMAETTEQTDRATAELQQLRQHSLTVES-----QDTCEIC--EMMLLVKPFFIFICGHK 905
Query: 150 FHVECLKRWAEQQQVCPLCRR 88
FH +CL++ CRR
Sbjct: 906 FHSDCLEKHVVPLLTKEQCRR 926
>gi|862409 (U26711) cbl-b truncated form 1 [Homo sapiens]
Length = 810
Score = 34.0 bits (76), Expect = 1.2
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQ-QVCPLCR 91
C ICAE+ + CGH CL W E Q CP CR
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 412
>gi|862411 (U26712) cbl-b truncated form 2 [Homo sapiens]
Length = 770
Score = 34.0 bits (76), Expect = 1.2
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQ-QVCPLCR 91
C ICAE+ + CGH CL W E Q CP CR
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 412
>gi|2132852|pir||S66835 probable membrane protein YOL138c - yeast (Saccharomyces cerevisiae)
>gi|1420032|emb|CAA99159| (Z74880) ORF YOL138c
[Saccharomyces cerevisiae]
Length = 1341
Score = 34.0 bits (76), Expect = 1.2
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Query: 243 FLDSCEDVMEGTCPICAEDMELGXKII--CGHSFHVECLKRW--AEQQQVCP 100
+ DSC+ +C +C ++ +I CGH H +C++ W E +Q CP
Sbjct: 1282 YCDSCKK-KNTSCVLCERPLKKLTMVILPCGHEGHFQCIQEWFLDENEQECP 1332
>gi|1628438|emb|CAA64732| (X95465) ORF [Saccharomyces cerevisiae]
Length = 1342
Score = 34.0 bits (76), Expect = 1.2
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Query: 243 FLDSCEDVMEGTCPICAEDMELGXKII--CGHSFHVECLKRW--AEQQQVCP 100
+ DSC+ +C +C ++ +I CGH H +C++ W E +Q CP
Sbjct: 1283 YCDSCKK-KNTSCVLCERPLKKLTMVILPCGHEGHFQCIQEWFLDENEQECP 1333
>gi|2119386|pir||I56333 apolipoprotein B - rat (fragment) >gi|623549 (M27440)
apolipoprotein B [Rattus norvegicus]
Length = 989
Score = 34.0 bits (76), Expect = 1.2
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 510 EFFIVTMAAKKNLVLFLLNGM--------DEGDKKTICKFIVEIIFGTIRLVSYLCFFIV 355
E + + M K L+ L NG+ D+ +K + I +++ C F
Sbjct: 643 ELYTIAMRETKKLLSQLFNGLGHLFSYVQDQVEKSRV-----------INDITFKCPFSP 691
Query: 354 TAVKFRVPFNIFRELVNTIKNLGKSIKNLKA-FKEIKNFLDSCEDVME 214
T K + IFRE +N + NLG+ N + ++FL+ D++E
Sbjct: 692 TPCKLKDVLLIFREDLNILSNLGQQDINFTTILSDFQSFLERLLDIIE 739
>gi|862407 (U26710) cbl-b [Homo sapiens]
Length = 982
Score = 34.0 bits (76), Expect = 1.2
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQ-QVCPLCR 91
C ICAE+ + CGH CL W E Q CP CR
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 412
>gi|542812|pir||A49656 estrogen-responsive finger protein, efp (RING finger, coiled-coil
domains) - human >gi|458726|dbj|BAA04747| (D21205)
estrogen responsive finger protein (efp) [Homo sapiens]
Length = 630
Score = 33.6 bits (75), Expect = 1.5
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Query: 231 CEDVMEGTCPICAEDMELGXKIICGHSFHVECL-KRWAEQ--QQVCPLCR 91
C E +C IC E + CGH+F CL + WA Q +CP CR
Sbjct: 5 CPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCR 54
>gi|131780|sp|P10862|RA18_YEAST DNA REPAIR PROTEIN RAD18 >gi|73257|pir||DDBY18 DNA repair protein
RAD18 - yeast (Saccharomyces cerevisiae)
>gi|4267|emb|CAA31101| (X12588) RAD18 gene product (AA 1
- 487) [Saccharomyces cerevisiae] >gi|172322 (M36405)
DNA repair protein (RAD18) [Saccharomyces cerevisiae]
>gi|1907206|emb|CAA42281| (X59720) YCR066w, len:487
[Saccharomyces cerevisiae] >gi|226104|prf||1410314A
RAD18 gene [Saccharomyces cerevisiae]
Length = 487
Score = 33.6 bits (75), Expect = 1.5
Identities = 16/44 (36%), Positives = 23/44 (51%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
C IC + +++ CGH+F C++ Q CPLC LFE
Sbjct: 28 CHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPNCPLC---LFE 68
>gi|2496896|sp|Q09251|YQ55_CAEEL HYPOTHETICAL 47.6 KD PROTEIN C16C10.5 IN CHROMOSOME III
>gi|3874383|emb|CAA86743| (Z46787) similar to
Glutaredoxin, Zinc finger, C3HC4 type (RING finger)
[Caenorhabditis elegans]
Length = 409
Score = 33.6 bits (75), Expect = 1.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 240 LDSCEDVMEG----TCPICAEDMELGXKIICGHSFHVECLKRW--AEQQQVCPLCR 91
LD E V + T + ++ E K+ CGH FH C++ W + Q CP C+
Sbjct: 303 LDDSEHVHDADAVVTTKMVEDEDEKLYKLSCGHVFHEFCIRGWVVVGKLQTCPYCK 358
>gi|3560212|emb|CAA20765| (AL031536) hypothetical zinc finger protein [Schizosaccharomyces
pombe]
Length = 1610
Score = 33.6 bits (75), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 162 CGHSFHVECLKRW--AEQQQVCPLCRRS 85
C H FH CL +W + CPLCR S
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLCRSS 1606
>gi|2136310|pir||A57041 transcription regulator Staf-50 - human >gi|899300|emb|CAA57684|
(X82200) gpStaf50 [Homo sapiens]
Length = 442
Score = 33.6 bits (75), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQV-------CPLCR 91
E TCPIC E + + CGHSF C+ ++ + CP+C+
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQ 60
>gi|2104419|emb|CAB08748| (Z95395) Zinc finger, C3HC4 type [Schizosaccharomyces pombe]
Length = 309
Score = 33.6 bits (75), Expect = 1.5
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 237 DSC--EDVMEGTCPICAEDM---ELGXKIICGHSFHVECLKRWAEQQQV-CPLCRRSLFE 76
DSC ED E C IC D ++ + C H FH +C+ W + CPLC ++
Sbjct: 194 DSCLLEDE-EDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDYYK 252
>gi|1001957 (U19106) ZNF127 [Mus musculus]
Length = 544
Score = 33.6 bits (75), Expect = 1.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 16/45 (35%)
Query: 219 MEGTCPICAE---------DMELGXKIICGHSFHVECLKRWAEQQQV-------CPLCRR 88
M+ C IC E D G C H++ + C++RW Q CP CR
Sbjct: 343 MDKVCGICMEVVYEKADPTDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCPQCRV 402
Query: 87 S 85
S
Sbjct: 403 S 403
>gi|1947117 (AF000261) weakly similar to myosin heavy chain A [Caenorhabditis
elegans]
Length = 313
Score = 33.6 bits (75), Expect = 1.5
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 282 SIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDME----LGXKIICGHS---FHVECLKRW 124
S K L+ +++I F C IC +E L + C + +V+C K W
Sbjct: 234 SEKILEEYEKISKFYKLPTQSSAKDCAICINGIEPLEFLDSTLKCQNCTQMLNVDCAKLW 293
Query: 123 AEQQQVCPLCRR 88
+Q +CP C++
Sbjct: 294 LPKQSICPTCKK 305
>gi|1255835 (U53337) similar to Tektin A1 - sea urchin (PIR:A46170) and
trans-acting transcriptional factor [Caenorhabditis
elegans]
Length = 639
Score = 33.2 bits (74), Expect = 2.0
Identities = 19/51 (37%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Query: 228 EDVMEGTCPICAE-DMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
EDV C IC + + E + C HS C RW VCP+CR + E
Sbjct: 22 EDVQ---CHICFQVNHEPVTFLTCKHSICAGCAGRWLSSCSVCPMCRTRVRE 70
>gi|2145348|emb|CAA70794| (Y09598) hypothetical protein [avian adenovirus EDS]
Length = 346
Score = 33.2 bits (74), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQV-CPLCRRSL 82
CP+C + + ++CGH+ CL + CP+CR S+
Sbjct: 18 CPVCLDLFRVPITLMCGHTCCKHCLNGIVKSDNARCPVCRGSM 60
>gi|731703|sp|P38823|YHR5_YEAST HYPOTHETICAL 46.1 KD PROTEIN IN ERP5-ORC6 INTERGENIC REGION
>gi|630130|pir||S48957 hypothetical protein YHR115c -
yeast (Saccharomyces cerevisiae) >gi|529132 (U00059)
Yhr115cp [Saccharomyces cerevisiae]
Length = 416
Score = 33.2 bits (74), Expect = 2.0
Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 6/61 (9%)
Query: 273 NLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKII---CGHSFHVECLKRWA---EQQ 112
N +A IKN + + C IC ++ I C HS+H C++R Q
Sbjct: 305 NKEALSRIKNLQKLTTGLEQEDCSICLNKIKPCQAIFISPCAHSWHFHCVRRLVIMNYPQ 364
Query: 111 QVCPLCR 91
+CP CR
Sbjct: 365 FMCPNCR 371
>gi|1363837|pir||S59296 probable finger protein YOL054w - yeast (Saccharomyces cerevisiae)
>gi|984189|emb|CAA62533| (X91067) Zn-finger (C3HC4)
protein [Saccharomyces cerevisiae]
>gi|1419863|emb|CAA99062| (Z74796) ORF YOL054w
[Saccharomyces cerevisiae]
Length = 406
Score = 33.2 bits (74), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRW----AEQQQVCPLCRRSL 82
C IC + M + CGH++ CL W +++ CP CR +
Sbjct: 30 CSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRSDI 75
>gi|2213555|emb|CAB09767| (Z97052) hypothetical protein [Schizosaccharomyces pombe]
Length = 821
Score = 33.2 bits (74), Expect = 2.0
Identities = 22/78 (28%), Positives = 36/78 (45%), Gaps = 11/78 (14%)
Query: 324 IFRELVNTIKNLGKSIKNLKAFKEIKN------FLDSCEDVMEGTCPICAEDMELGXKI- 166
++ +L+ LG + K + + +++K + D +C IC E G
Sbjct: 721 MYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAYFDDASLSSADSCLICLETYTNGDICR 780
Query: 165 ---ICGHSFHVECLKRW-AEQQQVCPLCR 91
C H FH C+ +W CPLCR
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>gi|3121867|sp|P93471|COP1_PEA COP1 REGULATORY PROTEIN >gi|1694900|emb|CAA70768| (Y09579) Cop1
protein [Pisum sativum]
Length = 672
Score = 32.8 bits (73), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLC 94
CPIC + ++ CGHSF C+ + CP C
Sbjct: 47 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCC 84
>gi|1079063|pir||S54252 deep orange protein - fruit fly (Drosophila melanogaster)
>gi|798832|emb|CAA60382| (X86683) deep orange (dor)
[Drosophila melanogaster]
Length = 1002
Score = 32.8 bits (73), Expect = 2.6
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 4/77 (5%)
Query: 318 RELVNTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXK----IICGHS 151
RE+ T + + L+ ++ ++S + TC IC +M L K ICGH
Sbjct: 853 REMAETTEQTDRVTAELQQLRQHSLTVES-----QDTCEIC--EMMLLVKPFFIFICGHK 905
Query: 150 FHVECLKRWAEQQQVCPLCRR 88
FH +CL++ CRR
Sbjct: 906 FHSDCLEKHVVPLLTKEQCRR 926
>gi|639775 (L36930) glycoprotein precursor [Bayou virus]
Length = 1141
Score = 32.8 bits (73), Expect = 2.6
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 414 IVEIIFGTIRLVSYLCFFIVTAVKFRVPFNIFRELVNTIKNLGKSIKNL-----KAFKEI 250
+ +I T+RL++Y C T KF++ + V K +G + ++ + KE+
Sbjct: 507 VTMVILKTLRLLTYSCSHYSTESKFKIILE--KVKVEYQKTMGSMVCDICHHECETAKEL 564
Query: 249 KNFLDSCEDVMEGTCPICAEDMELGXKIICGH-------SFHVECLKRWAEQQQVCPLCR 91
+ SC EG CP C E + H E LK+ ++ +V C
Sbjct: 565 EGHKKSC---AEGQCPYCMTLTEATESALQAHYAVCKLTGRFQEALKKSLKKPEVKRGCY 621
Query: 90 RSL 82
R+L
Sbjct: 622 RTL 624
>gi|2244792|emb|CAB10215| (Z97336) ankyrin homolog [Arabidopsis thaliana]
Length = 936
Score = 32.8 bits (73), Expect = 2.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 216 EGTCPICAEDMELGXKIICGH-SFHVECLKRWAEQQQVCPLCRRSL 82
+G C IC + + CGH + + CLK ++ CP+CR ++
Sbjct: 286 DGLCVICVDAPSEAVCVPCGHVAGCISCLKEIENKKMGCPVCRANI 331
>gi|2039304 (U77845) hTRIP [Homo sapiens]
Length = 469
Score = 32.8 bits (73), Expect = 2.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 207 CPICAEDMELGXKII---CGHSFHVECLKRWAE--QQQVCPLCR 91
C IC++ + + CGH+FH++CL + E + CP CR
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHLQCLIQSFETAPSRTCPQCR 50
>gi|4008410|emb|CAB07413| (Z92839) predicted using Genefinder; similar to Zinc finger, C3HC4
type (RING finger) [Caenorhabditis elegans]
Length = 76
Score = 32.8 bits (73), Expect = 2.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 219 MEGTCPICAEDMELGXKI----ICGHSFHVECLKR 127
M+ TC IC E+ + I ICGHSF + C+++
Sbjct: 22 MKPTCSICMEEFDANSHIPKVLICGHSFCIICIEK 56
>gi|2499962|sp|Q13702|PS43_HUMAN 43 KD POSTSYNAPTIC PROTEIN (ACETYLCHOLINE RECEPTOR-ASSOCIATED 43 KD
PROTEIN) (RAPSYN) >gi|631056|pir||S45064 nicotinic
acetylcholine receptor-associated 43K protein - human
>gi|512485|emb|CAA83954| (Z33905) 43kD Acetylcholine
receptor-associated protein (Rapsyn) [Homo sapiens]
Length = 412
Score = 32.8 bits (73), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
Query: 231 CEDVMEGTCPICAEDMELGXK------IICGHSFHVECLKRWAEQQQVCPLCRRS 85
C + E C +C E +G K + C H FH+ CL+ + CP CRRS
Sbjct: 355 CVEETELYCALCGES--IGEKNSRLQALPCSHIFHLRCLQN--NGTRSCPNCRRS 405
>gi|2257844 (AF000138) rapsyn [Gallus gallus]
Length = 412
Score = 32.8 bits (73), Expect = 2.6
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 6/48 (12%)
Query: 231 CEDVMEGTCPICAEDMELGXK------IICGHSFHVECLKRWAEQQQVCPLCRR 88
C + ME C +C E +G K + C H FH++CL+ + CP CRR
Sbjct: 355 CVEEMELYCGMCGES--IGEKNNQLQALPCSHFFHLKCLQ--TNGTRGCPNCRR 404
>gi|3024571|sp|Q62191|RO52_MOUSE 52 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN (SS-A))
(RO(SS-A)) (RO52) >gi|625146 (L27990) Ro protein [Mus
musculus]
Length = 470
Score = 32.5 bits (72), Expect = 3.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKRWAEQ-QQVCPLCRR 88
E TC IC + M I CGH F EC+ + CP CR+
Sbjct: 17 EVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQ 60
>gi|3116149|emb|CAA18897| (AL023290) putative serine-rich zinc-finger protein
[Schizosaccharomyces pombe]
Length = 556
Score = 32.5 bits (72), Expect = 3.5
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 207 CPIC----AEDMELGXKIICGHSFHVECLKRW-AEQQQVCPLCRRSL 82
C IC +E+ L ++ C H FH C+ + + +CPLC++S+
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSV 544
>gi|3880871|emb|CAA21635| (AL032639) similar to Zinc finger, C3HC4 type (RING finger); cDNA
EST EMBL:C08103 comes from this gene; cDNA EST
EMBL:D65556 comes from this gene; cDNA EST EMBL:D69037
comes from this gene [Caenorhabditis elegans]
Length = 283
Score = 32.5 bits (72), Expect = 3.5
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 6/43 (13%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQV------CPLCRRSLF 79
CPIC + CGH F EC+ ++ +Q + C +CR + +
Sbjct: 105 CPICLANASFPVLTDCGHIFCCECIIQYWQQSKAIVTPCDCAMCRSTFY 153
>gi|3560235|emb|CAA20703| (AL031530) hypothetical zinc finger protein [Schizosaccharomyces
pombe]
Length = 680
Score = 32.5 bits (72), Expect = 3.5
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 258 KEIKNFLDSCEDVMEGTCPICAEDMELGXKI-ICGHSFHVECL-KRWAEQQQVCPLCRR 88
+E+K F C+ C +C + I +CGH F +C+ KR +Q+ CP+C R
Sbjct: 616 EELKTFRAMCK------CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICGR 668
>gi|1869881|emb|CAB06705| (Z86099) RL2 [human herpesvirus 2]
Length = 826
Score = 32.5 bits (72), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 207 CPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVCPLC 94
C +C +++ + C H F + C+K W + CPLC
Sbjct: 126 CAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIPLRNTCPLC 166
>gi|124135|sp|P28284|ICP0_HSV2H TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0 (VMW118 PROTEIN)
>gi|73650|pir||EDBEXD immediate-early protein RL2 -
human herpesvirus 2 (strain HG52)
>gi|1869822|emb|CAB06760| (Z86099) RL2 [human
herpesvirus 2] >gi|2626942|dbj|BAA23427| (D10471)
Vmw118(ICP0) [human herpesvirus 2]
Length = 825
Score = 32.5 bits (72), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 207 CPICAEDMELGXK---IICGHSFHVECLKRWAEQQQVCPLC 94
C +C +++ + C H F + C+K W + CPLC
Sbjct: 126 CAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIPLRNTCPLC 166
>gi|1353157|sp|Q09600|YRM2_CAEEL HYPOTHETICAL 108.5 KD PROTEIN R06F6.2 IN CHROMOSOME II
>gi|3878900|emb|CAA86774| (Z46794) similar to vacuolar
biogenesis protein (pep5); cDNA EST EMBL:D27614 comes
from this gene; cDNA EST EMBL:D34974 comes from this
gene [Caenorhabditis elegans]
Length = 950
Score = 32.5 bits (72), Expect = 3.5
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 324 IFRELVNTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGX-KIICGHSF 148
I E NTIK K++ L E F V + C C ++L +C H++
Sbjct: 736 IIEEDRNTIKENNKAMGELDGTVESLKFNAQIMQVTK--CSACDTPLQLPTVHFLCKHAY 793
Query: 147 HVECLKRW-AEQQQVCPLCR 91
HV C + + + CP C+
Sbjct: 794 HVHCFESYNMDGSDKCPACQ 813
>gi|91257|pir||A30891 regulatory protein rpt-1 - mouse
Length = 365
Score = 32.1 bits (71), Expect = 4.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECL------KRWAEQQQVCPLCR 91
E TCPIC E ++ C HSF C+ R + + CP+CR
Sbjct: 24 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 71
>gi|3882149|dbj|BAA34434| (AB018257) KIAA0714 protein [Homo sapiens]
Length = 1112
Score = 32.1 bits (71), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 2/28 (7%)
Query: 162 CGHSFHVECLKRW--AEQQQVCPLCRRSLF 79
C FH CL +W + + CPLCR + F
Sbjct: 1083 CKKKFHSACLYKWFTSSNKSTCPLCRETFF 1112
>gi|321074|pir||S28418 probable zinc-binding protein - Iberian ribbed newt
Length = 624
Score = 32.1 bits (71), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 237 DSCEDVMEGTCPICAEDMELGXKIICGHSFHVECL-KRWAEQQQV-CPLCRRSLFE 76
D ED+ TCP+C + + CGH+F C+ K W CP C+ L E
Sbjct: 155 DFTEDL---TCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTE 207
>gi|584704|sp|Q02084|A33_PLEWA ZINC-BINDING PROTEIN A33 >gi|213868 (L04190) Zn-binding protein
[Pleurodeles waltlii]
Length = 624
Score = 32.1 bits (71), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 237 DSCEDVMEGTCPICAEDMELGXKIICGHSFHVECL-KRWAEQQQV-CPLCRRSLFE 76
D ED+ TCP+C + + CGH+F C+ K W CP C+ L E
Sbjct: 155 DFTEDL---TCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTE 207
>gi|133482|sp|P15533|RPT1_MOUSE DOWN REGULATORY PROTEIN OF INTERLEUKIN 2 RECEPTOR >gi|200802
(J03776) rpt-1r [Mus musculus]
Length = 353
Score = 32.1 bits (71), Expect = 4.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECL------KRWAEQQQVCPLCR 91
E TCPIC E ++ C HSF C+ R + + CP+CR
Sbjct: 12 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 59
>gi|131129|sp|P09108|PS43_TORCA 43 KD POSTSYNAPTIC PROTEIN (ACETYLCHOLINE RECEPTOR-ASSOCIATED 43 KD
PROTEIN)
Length = 412
Score = 32.1 bits (71), Expect = 4.5
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 4/49 (8%)
Query: 231 CEDVMEGTCPICAEDM----ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRS 85
C + ME C +C E + + C H FH++CL+ + CP C+RS
Sbjct: 355 CMEDMELYCGLCGESIGDQNSQLQALPCSHLFHLKCLQ--TNGNRGCPNCKRS 405
>gi|280546|pir||S28275 hypothetical protein F54G8.4 - Caenorhabditis elegans (fragment)
Length = 574
Score = 32.1 bits (71), Expect = 4.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 246 NFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAE---QQQVCPLCR 91
N L+ E ++ TCPIC + + + C H+F CL+ A+ + CP CR
Sbjct: 32 NPLEKIEQLL--TCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECR 84
>gi|563127 (U09825) acid finger protein [Homo sapiens]
>gi|4508005|ref|NP_003440.1|pZNF173| zinc finger protein
173
Length = 539
Score = 32.1 bits (71), Expect = 4.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVEC---LKRWAEQQQVCPLCRR 88
E TC IC + + I CGH F C ++ + + VCPLC++
Sbjct: 13 EVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKK 58
>gi|465914|sp|Q03601|YMB4_CAEEL HYPOTHETICAL 104.4 KD PROTEIN F54G8.4 IN CHROMOSOME III
Length = 932
Score = 32.1 bits (71), Expect = 4.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 246 NFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAE---QQQVCPLCR 91
N L+ E ++ TCPIC + + + C H+F CL+ A+ + CP CR
Sbjct: 32 NPLEKIEQLL--TCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECR 84
>gi|3256109|emb|CAA19658| (AL024454) 1-evidence=predicted by motif;
1-match_accession=PROSITE:PS00339;
1-match_description=Aminoacyl-transfer RNA synthetases
class-II signature 2.; 1-method=ppsearch;;
1-evidence_end; 2-evidence=predicted by motif; 2-mat...
Length = 263
Score = 32.1 bits (71), Expect = 4.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 546 FIFSGMCILFSFEFFIVTMAAKKNLVLFLLNGM 448
+ FS CILF FF+ + A L+ FL GM
Sbjct: 119 YAFSAFCILFQVSFFLSSYVAPLTLICFLYMGM 151
>gi|3877606|emb|CAA79562| (Z19155) similarity to zinc finger region of ret tyrosine kinase;
cDNA EST EMBL:M75881 comes from this gene; cDNA EST
EMBL:D67687 comes from this gene; cDNA EST yk238b9.5
comes from this gene; cDNA EST yk272c8.3 comes from
this... >gi|3881692|emb|CAA80152| (Z22177) similarity to
zinc finger region of ret tyrosine kinase; cDNA EST
EMBL:M75881 comes from this gene; cDNA EST EMBL:D67687
comes from this gene; cDNA EST yk238b9.5 comes from this
gene; cDNA EST yk272c8.3 comes from this...
Length = 974
Score = 32.1 bits (71), Expect = 4.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 246 NFLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAE---QQQVCPLCR 91
N L+ E ++ TCPIC + + + C H+F CL+ A+ + CP CR
Sbjct: 32 NPLEKIEQLL--TCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECR 84
>gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococcus jannaschii >gi|1591962
(U67572) purine NTPase [Methanococcus jannaschii]
Length = 1005
Score = 31.7 bits (70), Expect = 5.9
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 345 KFRVPFNIFRELVNTIKNLGKSIKNLKAFKEIKNFLDSCEDVMEGTCPICAEDMELGXKI 166
K +V N+ +E + K LG+ +K K+I LD ++V EG CP+C ++ K+
Sbjct: 460 KKKVLENLQKEKIELNKKLGEINSEIKRLKKI---LDELKEV-EGKCPLCKTPIDENKKM 515
Query: 165 ICGHSFHVECLKRWAEQQQV 106
+ + ++ E +++
Sbjct: 516 ELINQHKTQLNNKYTELEEI 535
>gi|1362576|pir||S57722 sli-1 protein - Caenorhabditis elegans >gi|895767|emb|CAA61507|
(X89223) sli-1 [Caenorhabditis elegans]
Length = 582
Score = 31.7 bits (70), Expect = 5.9
Identities = 17/39 (43%), Positives = 20/39 (50%), Gaps = 4/39 (10%)
Query: 207 CPICAEDMELGXKII-CGHSFHVECLKRWAEQQ---QVCPLCR 91
C IC +D E KI CGH +CL W + CP CR
Sbjct: 390 CKIC-DDNEKNIKIEPCGHLLCAKCLANWQDSDGGGNTCPFCR 431
>gi|3738284 (AC005309) unknown protein [Arabidopsis thaliana]
Length = 324
Score = 31.7 bits (70), Expect = 5.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 219 MEGTCPICAEDM-----ELGXKIICGHSFHVECLKRWAEQQ--QVCPLCR 91
+E +C IC E + K+ CGH FH++C+ + CP CR
Sbjct: 34 VEVSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQCPNCR 83
>gi|1326275 (U58730) similar to the proto-oncogene C-CBL [Caenorhabditis
elegans]
Length = 585
Score = 31.7 bits (70), Expect = 5.9
Identities = 17/39 (43%), Positives = 20/39 (50%), Gaps = 4/39 (10%)
Query: 207 CPICAEDMELGXKII-CGHSFHVECLKRWAEQQ---QVCPLCR 91
C IC +D E KI CGH +CL W + CP CR
Sbjct: 390 CKIC-DDNEKNIKIEPCGHLLCAKCLANWQDSDGGGNTCPFCR 431
>gi|91146|pir||A31995 nicotinic acetylcholine receptor-associated 46K protein - mouse
>gi|200653 (J03962) acetylcholine receptor-associated
protein [Mus musculus]
Length = 412
Score = 31.7 bits (70), Expect = 5.9
Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 4/49 (8%)
Query: 231 CEDVMEGTCPICAEDM-ELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRS 85
C + E C +C E + E ++ C H FH+ CL+ + CP CRRS
Sbjct: 355 CVEETELYCGLCGESIGERNSRLQALPCSHIFHLRCLQN--NGTRSCPNCRRS 405
>gi|131128|sp|P12672|PS43_MOUSE 43 KD POSTSYNAPTIC PROTEIN (ACETYLCHOLINE RECEPTOR-ASSOCIATED 43 KD
PROTEIN) (RAPSYN) >gi|91188|pir||S04488 postsynaptic
membrane 43K protein - mouse >gi|53805|emb|CAA33789|
(X15788) postsynaptic 43kD protein (AA 1-412) [Mus
musculus]
Length = 412
Score = 31.7 bits (70), Expect = 5.9
Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 4/49 (8%)
Query: 231 CEDVMEGTCPICAEDM-ELGXKII---CGHSFHVECLKRWAEQQQVCPLCRRS 85
C + E C +C E + E ++ C H FH+ CL+ + CP CRRS
Sbjct: 355 CVEETELYCGLCGESIGERNSRLQALPCSHIFHLRCLQN--NGTRSCPNCRRS 405
>gi|281007|pir||B43817 transforming protein (cbl) - mouse
Length = 896
Score = 31.7 bits (70), Expect = 5.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 201 ICAEDMELGXKIICGHSFHVECLKRWAEQQ-QVCPLCR 91
ICAE+ + CGH CL W E + Q CP CR
Sbjct: 364 ICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 401
>gi|115857|sp|P22682|CBL_MOUSE PROTO-ONCOGENE C-CBL >gi|50315|emb|CAA40394| (X57111) c-cbl protein
[Mus musculus]
Length = 896
Score = 31.7 bits (70), Expect = 5.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 201 ICAEDMELGXKIICGHSFHVECLKRWAEQQ-QVCPLCR 91
ICAE+ + CGH CL W E + Q CP CR
Sbjct: 364 ICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 401
>gi|2832675|emb|CAA16775| (AL021712) hypothetical protein [Arabidopsis thaliana]
Length = 202
Score = 31.3 bits (69), Expect = 7.8
Identities = 14/47 (29%), Positives = 21/47 (43%)
Query: 216 EGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
+ C +C + I CGH+F C + + CPLC R + E
Sbjct: 151 DSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIE 197
>gi|2495970|sp|Q57862|Y419_METJA HYPOTHETICAL PROTEIN MJ0419 >gi|2128310|pir||C64352 hypothetical
protein MJ0419 - Methanococcus jannaschii >gi|1591122
(U67494) M. jannaschii predicted coding region MJ0419
[Methanococcus jannaschii]
Length = 354
Score = 31.3 bits (69), Expect = 7.8
Identities = 19/64 (29%), Positives = 33/64 (50%)
Query: 621 DNLGVLQVISLVLSASAFLIAFCHTFIFSGMCILFSFEFFIVTMAAKKNLVLFLLNGMDE 442
DN+G +++ + + S + F I S + LFS FF ++ A K L+ L G+D+
Sbjct: 7 DNMGKIELHHVFVMLSCIYLIFSDISINSAVVFLFSSIFFYISFTAGKR--LYYLIGIDK 64
Query: 441 GDKK 430
+ K
Sbjct: 65 ENLK 68
>gi|3377941|emb|CAA17526| (AL021960) putative protein (fragment) [Arabidopsis thaliana]
Length = 1331
Score = 31.3 bits (69), Expect = 7.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
CPIC + C H F C+ + + CP+C+
Sbjct: 381 CPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCK 419
>gi|3319370 (AF077409) contains similarity to C3HC4-type zinc fingers (Pfam:
zf-C3HC4.hmm, score: 32.94) [Arabidopsis thaliana]
Length = 233
Score = 31.3 bits (69), Expect = 7.8
Identities = 28/109 (25%), Positives = 43/109 (38%), Gaps = 7/109 (6%)
Query: 402 IFGTIRLVSYLCFFIV-------TAVKFRVPFNIFRELVNTIKNLGKSIKNLKAFKEIKN 244
+ G +R + C + A K R+ F EL + I NL + + K N
Sbjct: 122 LVGCVRKIQRWCLSSIFDEYQRFAAAKARISDQRFMELFD-ISNLKHTPLSFSCSKRGVN 180
Query: 243 FLDSCEDVMEGTCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
+ C +C + I CGH+F C + + CPLC R + E
Sbjct: 181 --------NDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIE 228
>gi|2738454 (AF003534) putative apoptosis inhibitor [Chilo iridescent virus]
Length = 208
Score = 31.3 bits (69), Expect = 7.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 210 TCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSLFE 76
TC IC + I CGHS EC+ + Q CP+C+ + +
Sbjct: 162 TCKICFTNKITKVLIPCGHSSCYECVFK----LQTCPICKNNFIK 202
>gi|1353180|sp|P47732|ZFP_IRV6 ZINC FINGER PROTEIN
Length = 239
Score = 31.3 bits (69), Expect = 7.8
Identities = 16/43 (37%), Positives = 22/43 (50%)
Query: 210 TCPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
TC IC + I CGHS EC+ + Q CP+C+ +L
Sbjct: 162 TCKICFTNKITKVLIPCGHSSCYECVFK----LQTCPICKITL 200
>gi|3164222|dbj|BAA28598| (AB008518) RMA1 [Arabidopsis thaliana] >gi|4206205 (AF071527) RMA1
RING zinc finger protein [Arabidopsis thaliana]
Length = 249
Score = 31.3 bits (69), Expect = 7.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 11/39 (28%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQ-----------QVCPLCR 91
C IC + ++ +CGH F C+ +W + Q + CP+C+
Sbjct: 48 CNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97
>gi|4510401|gb|AAD21488| (AC006587) putative general negative regulator of transcription
[Arabidopsis thaliana]
Length = 236
Score = 31.3 bits (69), Expect = 7.8
Identities = 18/42 (42%), Positives = 27/42 (63%), Gaps = 10/42 (23%)
Query: 216 EGTCPICAEDMELGXKII----CGHSFHVEC---LKRWAEQQQV---CPLCR 91
E TCP+C E+M+L + + CG+ V C + AE+ + CP CR
Sbjct: 6 EKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACR 57
>gi|2408068|emb|CAB16270| (Z99165) hypothetical protein [Schizosaccharomyces pombe]
Length = 425
Score = 31.3 bits (69), Expect = 7.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 207 CPICAEDM----ELGXKIICGHSFHVECLKRWAEQQQVCPLCRRSL 82
CPIC E M E + C H H C + + CP C +++
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTI 316
>gi|3861164|emb|CAA15064| (AJ235272) unknown [Rickettsia prowazekii]
Length = 253
Score = 31.3 bits (69), Expect = 7.8
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 594 SLVLSASAFLIAFCHTFIFSGM--CILFSFEFFIVTMAAKKNLVLFLLNGMDEGDKKTIC 421
S L+AS +IA I+SG+ ILFSF F ++KN V+ L++ I
Sbjct: 37 SSFLAASISIIAH-FPLIYSGIIVAILFSFFVFFFKNNSEKNAVINLISSFMLAVALIIN 95
Query: 420 KF------IVEIIFGTIRLVSY-----LCFFIVTAVKFRVPF 328
F IV ++FG I VS+ L ++T + F V F
Sbjct: 96 YFTSLQNNIVHLLFGDILSVSFNDLIILVVVLITIISFVVYF 137
>gi|4376830|gb|AAD18680| (AE001638) polymorphic membrane protein B Family [Chlamydia
pneumoniae]
Length = 1723
Score = 31.3 bits (69), Expect = 7.8
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 83 NDLLHNGQTCCCSAHLFKHST*KE*PHIIFXPNSISS------AHIGHV-PSITSSHESK 241
N H+G CCS L T +IF N ++ A I ++ +I ++E+
Sbjct: 1077 NSSKHDGSAICCSTAL----TLAPNSQLIFENNKVTETTATTKASINNLGAAIYGNNETS 1132
Query: 242 KFLISLNAXXXXXXXXXXXXXXTNSLKILKGTLNFTAVTIKKHKYETKRIVPNIISTINL 421
ISL+A TN + G + FTA+ K + +N+
Sbjct: 1133 DVTISLSAENGSIFFKNNLCTATNKYCSIAGNVKFTAIEASAGK------AISFYDAVNV 1186
Query: 422 HIVFLSPSSIPFNKNKTRFFFAAIVTIKNSNENKIHIPENI 544
+ + N+ T I+ +ENK +IP+ +
Sbjct: 1187 STKETNAQELKLNEKATS--TGTILFSGELHENKSYIPQKV 1225
>gi|465016|sp|P33288|UVS2_NEUCR UVS-2 PROTEIN >gi|479590|pir||S34825 uvs2 protein - Neurospora
crassa >gi|303714|dbj|BAA02015| (D11458) UVS-2 protein
[Neurospora crassa] >gi|447143|prf||1913426A uvs-2 gene
[Neurospora crassa]
Length = 501
Score = 31.3 bits (69), Expect = 7.8
Identities = 12/39 (30%), Positives = 18/39 (45%)
Query: 207 CPICAEDMELGXKIICGHSFHVECLKRWAEQQQVCPLCR 91
C +C + + C H+F C++R CPLCR
Sbjct: 34 CHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCR 72
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139423614
Number of Sequences: 368476
Number of extensions: 2885933
Number of successful extensions: 8511
Number of sequences better than 10.0: 562
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 8299
Number of HSP's gapped (non-prelim): 321
length of query: 251
length of database: 112640273
effective HSP length: 53
effective length of query: 197
effective length of database: 93111045
effective search space: 18342875865
effective search space used: 18342875865
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)