BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII32R
(345 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|417042|sp|P28337|GCST_CHICK AMINOMETHYLTRANSFERASE PRECURSOR ... 90 4e-18
gi|769682 (L41522) glycine cleavage T protein [Saccharomyces cer... 88 2e-17
gi|1707880|sp|P48015|GCST_YEAST AMINOMETHYLTRANSFERASE PRECURSOR... 88 2e-17
gi|4502083|oth|NP_000472|PAMT aminomethyltransferase (glycine cl... 85 2e-16
gi|1346122|sp|P48728|GCST_HUMAN AMINOMETHYLTRANSFERASE PRECURSOR... 85 2e-16
gi|1507668|dbj|BAA12709| (D84656) ORF N313 [Schizosaccharomyces ... 85 2e-16
gi|2388965|emb|CAB11698| (Z98979) aminomethyltransferase precurs... 85 2e-16
gi|121084|sp|P25285|GCST_BOVIN AMINOMETHYLTRANSFERASE PRECURSOR ... 83 5e-16
gi|1707879|sp|P54261|GCST_SYNY3 PROBABLE AMINOMETHYLTRANSFERASE ... 82 1e-15
gi|3157944 (AC002131) Very strong similarity to aminomethyltrans... 81 3e-15
gi|3334196|sp|O23936|GCST_FLATR AMINOMETHYLTRANSFERASE PRECURSOR... 80 7e-15
gi|1346121|sp|P49363|GCST_FLAPR AMINOMETHYLTRANSFERASE PRECURSOR... 79 9e-15
gi|3402239|emb|CAA20175| (AL031184) aminomethyltransferase [Stre... 79 9e-15
gi|3334197|sp|O49849|GCST_FLAAN AMINOMETHYLTRANSFERASE PRECURSOR... 79 1e-14
gi|1707878|sp|P54260|GCST_SOLTU AMINOMETHYLTRANSFERASE PRECURSOR... 78 2e-14
gi|3915699|sp|P49364|GCST_PEA AMINOMETHYLTRANSFERASE PRECURSOR (... 77 4e-14
gi|3415128 (AF082220) aminomethyltransferase [Bartonella grahamii] 77 4e-14
gi|541967|pir||S38370 glycine cleavage system protein T precurso... 77 5e-14
gi|3334202|sp|P93256|GCST_MESCR AMINOMETHYLTRANSFERASE PRECURSOR... 75 2e-13
gi|1730258|sp|P54378|GCST_BACSU PROBABLE AMINOMETHYLTRANSFERASE ... 72 1e-12
gi|1458286 (U64842) partial CDS, [Caenorhabditis elegans] 71 2e-12
gi|2342607|emb|CAB11378| (Z98741) aminomethyltransferase [Mycoba... 68 2e-11
gi|2921867 (AF047332) glycine cleavage system T-protein [Drosoph... 65 2e-10
gi|1707877|sp|Q10376|GCST_MYCTU PROBABLE AMINOMETHYLTRANSFERASE ... 64 4e-10
gi|121086|sp|P27248|GCST_ECOLI AMINOMETHYLTRANSFERASE (GLYCINE C... 61 3e-09
gi|3257563|dbj|BAA30246| (AP000005) 401aa long hypothetical amin... 58 2e-08
gi|2498933|sp|Q46337|SOXA_CORSP SARCOSINE OXIDASE ALPHA SUBUNIT ... 47 5e-05
gi|3257564|dbj|BAA30247| (AP000005) 108aa long hypothetical prot... 39 0.011
gi|280630|pir||A60095 larval glue protein Lgp-1 precursor - frui... 35 0.17
gi|4503181|oth|NP_003919|PCXX1 UNKNOWN >gi|2370153|emb|CAA73804|... 35 0.17
gi|2983847 (AE000741) aminomethyltransferase (glycine cleavage s... 34 0.38
gi|134468|sp|P13729|SGS3_DROSI SALIVARY GLUE PROTEIN SGS-3 PRECU... 34 0.38
gi|1143437|emb|CAA88613| (Z48721) salivary gland secretion prote... 33 0.85
gi|3878597|emb|CAB04624| (Z81573) M02G9.2 [Caenorhabditis elegans] 32 1.5
gi|114063|sp|P14417|APOA_MACMU APOLIPOPROTEIN(A) (APO(A)) (LP(A)... 32 1.5
gi|123406|sp|P22810|HMOC_DROME HOMEOTIC PROTEIN ORTHODENTICLE (O... 32 1.9
gi|114062|sp|P08519|APOA_HUMAN APOLIPOPROTEIN(A) PRECURSOR (APO(... 32 1.9
gi|225794|prf||1313352A apolipoprotein a [Homo sapiens] 32 1.9
gi|2244707|dbj|BAA21115| (AB005287) thrombospondin 1 [Bos taurus] 31 2.5
gi|139786|sp|P23507|XA1_XENLA XA-1 PROTEIN PRECURSOR >gi|104237|... 31 4.3
gi|4033395|sp|O33367|GYRB_MYXXA DNA GYRASE SUBUNIT B >gi|2578422... 30 5.6
gi|2808774|emb|CAA16203| (AL021411) hypothetical protein SC7H1.1... 30 5.6
gi|2760117|dbj|BAA24177| (AB000829) alpha-amylase precursor [Str... 30 5.6
gi|2983590 (AE000724) cation transporting ATPase (E1-E2 family) ... 30 7.4
gi|538354 (M25631) thrombospondin [Homo sapiens] 30 7.4
gi|2822406|gb|AAC82912| (AF016485) ORF H1502 [Halobacterium sp. ... 30 7.4
gi|4226144 (AF125461) contains similarity to thrombospondin type... 30 7.4
gi|4503941|oth|NP_001476|PGBX2 gastrulation brain homeo box 2 >g... 30 7.4
gi|130318|sp|P20918|PLMN_MOUSE PLASMINOGEN PRECURSOR >gi|2144495... 30 7.4
gi|2224921 (AF000606) insect intestinal mucin IIM22 [Trichoplusi... 30 7.4
gi|135717|sp|P07996|TSP1_HUMAN THROMBOSPONDIN 1 PRECURSOR >gi|10... 30 7.4
gi|4507485|oth|NP_003237|PTHBS1 thrombospondin 1 >gi|37465|emb|C... 30 7.4
gi|2224919 (AF000605) insect intestinal mucin IIM14 [Trichoplusi... 30 7.4
gi|136880|sp|P28952|UL32_HSVEB MAJOR ENVELOPE GLYCOPROTEIN 300 (... 30 7.4
gi|266801|sp|Q01177|PLMN_RAT PLASMINOGEN >gi|321331|pir||A40522 ... 29 9.7
>gi|417042|sp|P28337|GCST_CHICK AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|345695|pir||A44167 glycine cleavage system
T-protein precursor - chicken >gi|222868|dbj|BAA01937|
(D11162) T-protein [Gallus gallus]
Length = 392
Score = 90.5 bits (221), Expect = 4e-18
Identities = 47/96 (48%), Positives = 58/96 (59%)
Query: 289 EQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLT 110
E L +TPL ALH G RMVPFAG+ +PVQY G + H HTR LFDVSHM Q R+
Sbjct: 20 EGLKQTPLDALHRARGGRMVPFAGWSLPVQYGRGHLESHLHTRRHCSLFDVSHMLQTRVY 79
Query: 109 GANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
G + + LE+LV DI +L G + TN +G I
Sbjct: 80 GRDRVRFLESLVVGDIAELRPGQGTLTLLTNERGDI 115
>gi|769682 (L41522) glycine cleavage T protein [Saccharomyces cerevisiae]
Length = 400
Score = 88.2 bits (215), Expect = 2e-17
Identities = 46/94 (48%), Positives = 58/94 (60%), Gaps = 1/94 (1%)
Query: 283 LSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKE-HQHTREQAGLFDVSHMGQIRLTG 107
L KT LH LH+ LG MVP+AGY MPV Y E H TR AGLFDVSHM Q +L+G
Sbjct: 16 LKKTALHDLHVSLGGTMVPYAGYSMPVLYKGQTHIESHNWTRTNAGLFDVSHMLQSKLSG 75
Query: 106 ANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
++ K L+ + P D LPVG ++ N +GG+
Sbjct: 76 PHSVKFLQRVTPTDFNALPVGSGTLSVLLNPQGGV 110
>gi|1707880|sp|P48015|GCST_YEAST AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|1077127|pir||S54642 glycine cleavage T
protein GCV1 - yeast (Saccharomyces cerevisiae)
>gi|840872|emb|CAA89844| (Z49770) Gcv1p [Saccharomyces
cerevisiae] >gi|1216226|emb|CAA65211| (X95966) glycine
cleavage T protein [Saccharomyces cerevisiae]
>gi|1431446|emb|CAA98840| (Z74315) ORF YDR019c
[Saccharomyces cerevisiae]
Length = 400
Score = 88.2 bits (215), Expect = 2e-17
Identities = 46/94 (48%), Positives = 58/94 (60%), Gaps = 1/94 (1%)
Query: 283 LSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKE-HQHTREQAGLFDVSHMGQIRLTG 107
L KT LH LH+ LG MVP+AGY MPV Y E H TR AGLFDVSHM Q +L+G
Sbjct: 16 LKKTALHDLHVSLGGTMVPYAGYSMPVLYKGQTHIESHNWTRTNAGLFDVSHMLQSKLSG 75
Query: 106 ANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
++ K L+ + P D LPVG ++ N +GG+
Sbjct: 76 PHSVKFLQRVTPTDFNALPVGSGTLSVLLNPQGGV 110
>gi|4502083|oth|NP_000472|PAMT aminomethyltransferase (glycine cleavage system protein T)
>gi|2134748|pir||I54192 aminomethyltransferase (EC
2.1.2.10) - human >gi|994761|dbj|BAA03512| (D14686)
glycine cleavage system T-protein [Homo sapiens]
Length = 403
Score = 85.0 bits (207), Expect = 2e-16
Identities = 42/96 (43%), Positives = 58/96 (59%)
Query: 289 EQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLT 110
E L +TPL+ H+ G +MV FAG+ +PVQY H HTR+ LFDVSHM Q ++
Sbjct: 31 EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKIL 90
Query: 109 GANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
G++ K +E+LV DI +L ++FTN GGI
Sbjct: 91 GSDRCKLMESLVVGDIAELRPNQGTLSLFTNEAGGI 126
>gi|1346122|sp|P48728|GCST_HUMAN AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|484332|pir||JN0485 glycine cleavage system
T-protein precursor - human >gi|391721|dbj|BAA02967|
(D13811) glycine cleavage system T-protein [Homo
sapiens]
Length = 403
Score = 85.0 bits (207), Expect = 2e-16
Identities = 42/96 (43%), Positives = 58/96 (59%)
Query: 289 EQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLT 110
E L +TPL+ H+ G +MV FAG+ +PVQY H HTR+ LFDVSHM Q ++
Sbjct: 31 EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKIL 90
Query: 109 GANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
G++ K +E+LV DI +L ++FTN GGI
Sbjct: 91 GSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGI 126
>gi|1507668|dbj|BAA12709| (D84656) ORF N313 [Schizosaccharomyces pombe]
Length = 313
Score = 84.7 bits (206), Expect = 2e-16
Identities = 44/98 (44%), Positives = 61/98 (61%), Gaps = 1/98 (1%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYP-LGVXKEHQHTREQAGLFDVSHMGQI 119
++ L +TPL+ LH++ GA +VPFAG+ MPVQY + H+ TRE +GLFDVSHM Q
Sbjct: 18 ASSSLKRTPLYDLHLKEGATIVPFAGFSMPVQYKGQTISASHKWTREHSGLFDVSHMVQW 77
Query: 118 RLTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
+ G NA LE++ P + +L + FTN GGI
Sbjct: 78 FVRGENATAYLESITPSSLKELKPFHSTLSAFTNETGGI 116
>gi|2388965|emb|CAB11698| (Z98979) aminomethyltransferase precursor [Schizosaccharomyces
pombe]
Length = 387
Score = 84.7 bits (206), Expect = 2e-16
Identities = 44/98 (44%), Positives = 61/98 (61%), Gaps = 1/98 (1%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYP-LGVXKEHQHTREQAGLFDVSHMGQI 119
++ L +TPL+ LH++ GA +VPFAG+ MPVQY + H+ TRE +GLFDVSHM Q
Sbjct: 18 ASSSLKRTPLYDLHLKEGATIVPFAGFSMPVQYKGQTISASHKWTREHSGLFDVSHMVQW 77
Query: 118 RLTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
+ G NA LE++ P + +L + FTN GGI
Sbjct: 78 FVRGENATAYLESITPSSLKELKPFHSTLSAFTNETGGI 116
>gi|121084|sp|P25285|GCST_BOVIN AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|89579|pir||A23707 glycine cleavage
T-protein precursor - bovine >gi|163771 (M59799)
T-protein [Bos taurus]
Length = 397
Score = 83.5 bits (203), Expect = 5e-16
Identities = 41/94 (43%), Positives = 56/94 (58%)
Query: 283 LSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTGA 104
L +TPL+ H+ G +MV FAG+ +PVQY H HTR+ LFDVSHM Q ++ G
Sbjct: 27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGC 86
Query: 103 NAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
+ K +E+LV DI +L ++FTN GGI
Sbjct: 87 DRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGI 120
>gi|1707879|sp|P54261|GCST_SYNY3 PROBABLE AMINOMETHYLTRANSFERASE (GLYCINE CLEAVAGE SYSTEM T PROTEIN)
>gi|1001434|dbj|BAA10058| (D63999)
aminomethyltransferase [Synechocystis sp.]
Length = 372
Score = 81.9 bits (199), Expect = 1e-15
Identities = 39/92 (42%), Positives = 59/92 (63%)
Query: 277 KTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTGANA 98
+TPL+ L E ++ F G++MPVQ+ G+ +EHQ RE+ G+FD+SHMG+ LTG
Sbjct: 9 RTPLYNLITEQTTKLTTFGGWEMPVQFA-GLKQEHQAVREKVGMFDISHMGKFVLTGQKV 67
Query: 97 AKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
+L++LVP D+ L G +Y + N +GGI
Sbjct: 68 LAALQSLVPSDLDRLTPGKAQYTVLLNAQGGI 99
>gi|3157944 (AC002131) Very strong similarity to aminomethyltransferase
precursor gb|U79769 from Mesembryanthemum crystallinum.
ESTs gb|T43167, gb|T21076, gb|H36999, gb|T22773,
gb|N38038, gb|T13742, gb|Z26545, gb|T20753 and gb|W43123
come from this ge...
Length = 408
Score = 80.8 bits (196), Expect = 3e-15
Identities = 41/97 (42%), Positives = 53/97 (54%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIR 116
S L KT L+ H+ G +MVPFAG+ MP+QY + + RE LFDV+HM +
Sbjct: 32 SEADLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVAHMCGLS 91
Query: 115 LTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
L G + LETLV D+ L G +FTN KGG
Sbjct: 92 LKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGG 128
>gi|3334196|sp|O23936|GCST_FLATR AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|2467117|emb|CAB16917| (Z99769) T-Protein
precursor [Flaveria trinervia]
Length = 407
Score = 79.6 bits (193), Expect = 7e-15
Identities = 41/97 (42%), Positives = 53/97 (54%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIR 116
S L KT L+ H+ G +MVPFAG+ MP+QY + + + RE LFDVSHM +
Sbjct: 31 SEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLS 90
Query: 115 LTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
L G + LE LV D+ L G +FTN KGG
Sbjct: 91 LKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGG 127
>gi|1346121|sp|P49363|GCST_FLAPR AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|542104|pir||S40217 T protein - Flaveria
pringlei >gi|1362139|pir||S56660 glycine decarboxylase T
protein precursor - Flaveria pringlei
>gi|438005|emb|CAA81077| (Z25858) T protein [Flaveria
pringlei]
Length = 407
Score = 79.2 bits (192), Expect = 9e-15
Identities = 41/97 (42%), Positives = 53/97 (54%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIR 116
S L KT L+ H+ G +MVPFAG+ MP+QY + + + RE LFDVSHM +
Sbjct: 31 SEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLS 90
Query: 115 LTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
L G + LE LV D+ L G +FTN KGG
Sbjct: 91 LKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGG 127
>gi|3402239|emb|CAA20175| (AL031184) aminomethyltransferase [Streptomyces coelicolor]
Length = 372
Score = 79.2 bits (192), Expect = 9e-15
Identities = 44/99 (44%), Positives = 59/99 (59%)
Query: 298 MSTEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQI 119
MS+ +L +T L A H LGA M FAG+DMP++Y +EH R +AGLFD+SHMG+I
Sbjct: 1 MSSTELRRTALDATHRALGATMTDFAGWDMPLRYG-SEREEHVAVRTRAGLFDLSHMGEI 59
Query: 118 RLTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
+TG AA+ L + +I + G RY M GGI
Sbjct: 60 TVTGPQAAELLNFALVGNIGTVKPGRARYTMICREDGGI 98
>gi|3334197|sp|O49849|GCST_FLAAN AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|2894400|emb|CAA94902| (Z71184) T-protein
[Flaveria anomala]
Length = 407
Score = 78.8 bits (191), Expect = 1e-14
Identities = 41/97 (42%), Positives = 52/97 (53%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIR 116
S L KT L+ H+ G +MVPFAG+ MP+QY + + RE LFDVSHM +
Sbjct: 31 SEADLKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSHMCGLS 90
Query: 115 LTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
L G + LE LV D+ L G +FTN KGG
Sbjct: 91 LKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGG 127
>gi|1707878|sp|P54260|GCST_SOLTU AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|2129976|pir||S59948 aminomethyltransferase
(EC 2.1.2.10) precursor - potato
>gi|438254|emb|CAA81081| (Z25862) T-protein [Solanum
tuberosum]
Length = 406
Score = 78.0 bits (189), Expect = 2e-14
Identities = 41/97 (42%), Positives = 52/97 (53%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIR 116
S L KT L+ H+ G +MVPFAG+ MP+QY + + RE LFDVSHM +
Sbjct: 31 SDADLKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSHMCGLS 90
Query: 115 LTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
L G + LE LV D+ L G +FTN KGG
Sbjct: 91 LKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGG 127
>gi|3915699|sp|P49364|GCST_PEA AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|541970|pir||S40260 T-protein - garden pea
>gi|1362061|pir||S56661 glycine decarboxylase T protein
precursor - garden pea >gi|438217|emb|CAA81080| (Z25861)
T-protein [Pisum sativum] >gi|3021553|emb|CAA10976|
(AJ222771) T protein [Pisum sativum]
Length = 408
Score = 77.3 bits (187), Expect = 4e-14
Identities = 39/94 (41%), Positives = 52/94 (54%)
Query: 286 QLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTG 107
+L KT L+ H+ G +MVPFAG+ MP+QY + + R+ LFDVSHM + L G
Sbjct: 35 ELKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKG 94
Query: 106 ANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
+ LE LV D+ L G +FTN KGG
Sbjct: 95 KDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGG 128
>gi|3415128 (AF082220) aminomethyltransferase [Bartonella grahamii]
Length = 189
Score = 77.3 bits (187), Expect = 4e-14
Identities = 37/75 (49%), Positives = 46/75 (61%)
Query: 226 FAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTGANAAKSLETLVPVDIIDLPV 47
FA ++MP+ YPLGV KEH HTR AGLFD+SHM I + GA A + L P+D L +
Sbjct: 5 FARWNMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGAQAVEFLSYAFPIDAAALKI 64
Query: 46 GMQRYAMFTNXKGGI 2
G RY N + GI
Sbjct: 65 GHSRYNYLLNGQAGI 79
>gi|541967|pir||S38370 glycine cleavage system protein T precursor - garden pea
>gi|407475|emb|CAA52800| (X74793) T-protein of the
glycine decarboxylase complex [Pisum sativum]
Length = 408
Score = 76.9 bits (186), Expect = 5e-14
Identities = 39/94 (41%), Positives = 52/94 (54%)
Query: 286 QLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTG 107
+L KT L+ H+ G +MVPFAG+ MP+QY + + R+ LFDVSHM + L G
Sbjct: 35 ELKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKG 94
Query: 106 ANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
+ LE LV D+ L G +FTN KGG
Sbjct: 95 KDVISFLEKLVIADVAALANGTGTLTVFTNEKGG 128
>gi|3334202|sp|P93256|GCST_MESCR AMINOMETHYLTRANSFERASE PRECURSOR (GLYCINE CLEAVAGE SYSTEM T
PROTEIN) >gi|1724108 (U79769) aminomethyltransferase
precursor [Mesembryanthemum crystallinum]
Length = 408
Score = 74.9 bits (181), Expect = 2e-13
Identities = 40/97 (41%), Positives = 52/97 (53%)
Query: 295 STEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIR 116
S L KT L+ H+ G +MVPFAG+ MP+QY + + RE LFDV+HM +
Sbjct: 32 SEADLKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVAHMCGLS 91
Query: 115 LTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
L G + LE LV DI L G ++ TN KGG
Sbjct: 92 LKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGG 128
>gi|1730258|sp|P54378|GCST_BACSU PROBABLE AMINOMETHYLTRANSFERASE (GLYCINE CLEAVAGE SYSTEM T PROTEIN)
>gi|1303890|dbj|BAA12546| (D84432) YqhI [Bacillus
subtilis] >gi|2634891|emb|CAB14388| (Z99116) similar to
aminomethyltransferase [Bacillus subtilis]
Length = 362
Score = 72.2 bits (174), Expect = 1e-12
Identities = 35/93 (37%), Positives = 55/93 (58%)
Query: 283 LSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTGA 104
L +TPL L+ E G + + F G+++PVQ+ + KEH+ R AGLFDVSHMG++ ++G
Sbjct: 2 LKRTPLFDLYKEYGGKTIDFGGWELPVQFS-SIKKEHEAVRTAAGLFDVSHMGEVEVSGN 60
Query: 103 NAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGG 5
++ L+ L+ D+ L G +Y GG
Sbjct: 61 DSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGG 93
>gi|1458286 (U64842) partial CDS, [Caenorhabditis elegans]
Length = 402
Score = 71.4 bits (172), Expect = 2e-12
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 301 RMSTEQLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQ-HTREQAGLFDVSHMG 125
R + +T L H + G ++V FAGYDMP QY KE HTR+ LFDVSHM
Sbjct: 19 RTAEASAKQTCLIETHKKHGGKLVEFAGYDMPTQYADFSIKESTIHTRKHVSLFDVSHML 78
Query: 124 QIRLTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
Q +TG + +E+L D+ L ++FTN KGGI
Sbjct: 79 QTYITGKDRVAFIESLTTADVQGLQENSGTLSVFTNEKGGI 119
>gi|2342607|emb|CAB11378| (Z98741) aminomethyltransferase [Mycobacterium leprae]
Length = 367
Score = 68.3 bits (164), Expect = 2e-11
Identities = 36/95 (37%), Positives = 52/95 (53%)
Query: 286 QLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTG 107
+L K PL H ELGA F G+ MPV Y G EH TR GLFDVSH+G+ + G
Sbjct: 6 ELLKGPLEDRHRELGANFAEFGGWLMPVSYA-GTVSEHSATRNAVGLFDVSHLGKALVRG 64
Query: 106 ANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
AA+ + +++ D+ + G +Y + + GG+
Sbjct: 65 PGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGV 99
>gi|2921867 (AF047332) glycine cleavage system T-protein [Drosophila
heteroneura]
Length = 148
Score = 64.8 bits (155), Expect = 2e-10
Identities = 34/92 (36%), Positives = 51/92 (54%), Gaps = 1/92 (1%)
Query: 277 KTPLHALHIELGARMVPFAGYDMPVQYP-LGVXKEHQHTREQAGLFDVSHMGQIRLTGAN 101
+T L+ H ++V F GY +PVQY + H +TR+ +FDVSHM Q + G +
Sbjct: 35 RTALYDFHARKSGKIVNFGGYALPVQYADQSIIASHNYTRQVGSIFDVSHMLQTYVRGND 94
Query: 100 AAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
AA LE++ DI+ + G +FTN +G I
Sbjct: 95 AAACLESISTADILGMLPGAGSLTVFTNEQGCI 127
>gi|1707877|sp|Q10376|GCST_MYCTU PROBABLE AMINOMETHYLTRANSFERASE (GLYCINE CLEAVAGE SYSTEM T PROTEIN)
>gi|1237064|emb|CAA94254| (Z70283) gcvT [Mycobacterium
tuberculosis]
Length = 379
Score = 64.0 bits (153), Expect = 4e-10
Identities = 35/95 (36%), Positives = 49/95 (50%)
Query: 286 QLSKTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTG 107
+L PL H ELGA F G+ MPV Y G EH TR GLFDVSH+G+ + G
Sbjct: 18 ELIHGPLEDRHRELGASFAEFGGWLMPVSYA-GTVSEHNATRTAVGLFDVSHLGKALVRG 76
Query: 106 ANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
AA+ + + + D+ + G +Y + GG+
Sbjct: 77 PGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGV 111
>gi|121086|sp|P27248|GCST_ECOLI AMINOMETHYLTRANSFERASE (GLYCINE CLEAVAGE SYSTEM T PROTEIN)
>gi|1360976|pir||A56689 aminomethyltransferase (EC
2.1.2.10) - Escherichia coli >gi|148040 (M97263)
T-protein [Escherichia coli] >gi|403343|emb|CAA52144|
(X73958) aminomethyltransferase [Escherichia coli]
>gi|882435 (U28377) ORF_f364 [Escherichia coli]
>gi|1789272 (AE000374) aminomethyltransferase (T
protein; tetrahydrofolate-dependent) of glycine cleavage
system [Escherichia coli]
Length = 364
Score = 60.9 bits (145), Expect = 3e-09
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 277 KTPLHALHIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTGANA 98
+TPL+ H GARMV F G+ MP+ Y + EH R AG+FDVSHM + L G+
Sbjct: 4 QTPLYEQHTLCGARMVDFHGWMMPLHYGSQID-EHHAVRTDAGMFDVSHMTIVDLRGSRT 62
Query: 97 AKSLETLVPVDIIDL-PVGMQRYAMFTNXKGGI 2
+ L L+ D+ L G Y+ N GG+
Sbjct: 63 REFLRYLLANDVAKLTKSGKALYSGMLNASGGV 95
>gi|3257563|dbj|BAA30246| (AP000005) 401aa long hypothetical aminomethyltransferase
[Pyrococcus horikoshii]
Length = 401
Score = 58.2 bits (138), Expect = 2e-08
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 256 HIELGARMVPFAGYDMPVQYPLGVXKEHQHTREQAGLFDVSHMGQIRLTGANAAKSLETL 77
H E ++ FAG++MP+ Y + +EH R G+FDVSHMG+I G +A K L+ +
Sbjct: 14 HKEHARKIEEFAGWEMPIWYS-SIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYV 72
Query: 76 VPVDIIDLPVGMQRYAMFTNXKGGI 2
DI P Y + N +G I
Sbjct: 73 TTNDISKPPAISGTYTLVLNERGAI 97
>gi|2498933|sp|Q46337|SOXA_CORSP SARCOSINE OXIDASE ALPHA SUBUNIT >gi|2127435|pir||I40889 sarcosine
oxidase (EC 1.5.3.1) alpha chain - Corynebacterium sp
>gi|927591 (U23955) sarcosine oxidase alpha subunit
[Corynebacterium sp.]
Length = 967
Score = 46.9 bits (109), Expect = 5e-05
Identities = 27/89 (30%), Positives = 43/89 (47%), Gaps = 7/89 (7%)
Query: 274 TPLHALHIELGARMVPFAGYDMPVQYP-------LGVXKEHQHTREQAGLFDVSHMGQIR 116
TP+H+ H+ GA+ + +P V +E RE G+ D + +G+I
Sbjct: 579 TPMHSWHLAQGAKFEDVGQWKRAWYFPQDGEDMDAAVYRECAAVRESVGMLDATTLGKIE 638
Query: 115 LTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKG 8
+ GA+AA+ L + L VGM RY + G
Sbjct: 639 IRGADAAEFLNRIYTNGYTKLKVGMARYGVMCKADG 674
>gi|3257564|dbj|BAA30247| (AP000005) 108aa long hypothetical protein [Pyrococcus horikoshii]
Length = 108
Score = 39.1 bits (89), Expect = 0.011
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 3 IPPLXLVNIA*RCMPTGRSMMSTGTRVSRDLAALAPVRRI*PMCETSNRPACSRVCWCSF 182
I PL L + G ++S R+ A P+ I PMCETSN P CS
Sbjct: 10 IAPLSLRTNVYVPLIAGGLLISFVVTYCRNFKASLPLNTISPMCETSNIPTAFLTARCSS 69
Query: 183 ITPSGYCTGMS*PANGTMRAPSSMC--KAWS 269
Y G+S PAN ++ S+C K W+
Sbjct: 70 FMLE-YHIGISHPANSSIFLACSLCQSKMWT 99
>gi|280630|pir||A60095 larval glue protein Lgp-1 precursor - fruit fly (Drosophila
virilis) >gi|1085175|pir||S50126 glue protein lgp-1 -
fruit fly (Drosophila virilis) >gi|433482|emb|CAA53796|
(X76203) major larval glue protein [Drosophila virilis]
>gi|450903|emb|CAA82672| (Z29565) glue protein
[Drosophila virilis] >gi|1091592|prf||2021274B glue
protein [Drosophila virilis]
Length = 232
Score = 35.2 bits (79), Expect = 0.17
Identities = 23/89 (25%), Positives = 37/89 (40%), Gaps = 2/89 (2%)
Query: 333 PDPETXFSRSHACPPNNCRKPRSTLCTSNSA--PAWCRSPATTCRCSTRSA**KNTSTPV 160
P P T +R+ P R + T+ + P TT +T + + T+TP
Sbjct: 98 PCPTTTTTRTTTTPTTTTRTTTTPTTTTRTTTTPTTTTRTTTTRTTTTPTTTTRTTTTPT 157
Query: 159 SRPACSMSRTWVRSV*PAPMLPSLWKPWCRW 67
+ + ++T AP P+ KPWC W
Sbjct: 158 TTTPTTTTQTTTTR---APPTPTTQKPWCPW 185
>gi|4503181|oth|NP_003919|PCXX1 UNKNOWN >gi|2370153|emb|CAA73804| (Y13374) putative prenylated
protein [Homo sapiens] >gi|2795885 (AF038168) putative
prenylated protein [Homo sapiens] >gi|3360403 (AF052096)
putative prenylated protein [Homo sapiens]
Length = 209
Score = 35.2 bits (79), Expect = 0.17
Identities = 27/78 (34%), Positives = 34/78 (42%), Gaps = 1/78 (1%)
Query: 297 CPPNNCRKPRST-LCTSNSAPAWCRSPATTCRCSTRSA**KNTSTPVSRPACSMSRTWVR 121
CP +C PRS LC+ NSAP C P + + +P S+PA M W
Sbjct: 50 CPLRSCSLPRSACLCSRNSAPGSCCRPWASLWS-------EPPPSPSSQPAPPM-YIWTL 101
Query: 120 SV*PAPMLPSLWKPWCRWT 64
S PA + W P WT
Sbjct: 102 SCAPA----ASWAPVTHWT 116
>gi|2983847 (AE000741) aminomethyltransferase (glycine cleavage system T
protein) [Aquifex aeolicus]
Length = 301
Score = 34.0 bits (76), Expect = 0.38
Identities = 19/49 (38%), Positives = 27/49 (54%)
Query: 148 LFDVSHMGQIRLTGANAAKSLETLVPVDIIDLPVGMQRYAMFTNXKGGI 2
+FD+SHMG RL + K L+ ++ L VG +Y + N KGGI
Sbjct: 1 MFDISHMG--RLLIEDPEKKLQYFTTNNLDKLSVGKVQYNLLPNEKGGI 47
>gi|134468|sp|P13729|SGS3_DROSI SALIVARY GLUE PROTEIN SGS-3 PRECURSOR >gi|85217|pir||S01358
salivary glue protein sgs-3 precursor - fruit fly
(Drosophila simulans)
Length = 217
Score = 34.0 bits (76), Expect = 0.38
Identities = 25/101 (24%), Positives = 37/101 (35%)
Query: 315 FSRSHACPPNNCRKPRSTLCTSNSAPAWCRSPATTCRCSTRSA**KNTSTPVSRPACSMS 136
F+ C C +T C + P + TT +T + T P ++P C +
Sbjct: 17 FANVANCSDCGCPTKATTTCAPPTKPTCKSTSTTTTTTTTTTTTTTTTRAPPTKPTCKST 76
Query: 135 RTWVRSV*PAPMLPSLWKPWCRWTSSTCRWACNAMRCSPTT 13
T + P KP C+ TS+T R PTT
Sbjct: 77 STTTTTTRAPPT-----KPTCKSTSTT----TTTTRAPPTT 108
>gi|1143437|emb|CAA88613| (Z48721) salivary gland secretion protein 4 [Drosophila
melanogaster]
Length = 378
Score = 32.8 bits (73), Expect = 0.85
Identities = 30/107 (28%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 333 PDPETXFSRSHACPPNNCRKPRSTLCTSNSAPAWCRSPATTCRCSTRSA**KNTSTPVSR 154
P ET + PP CR T T P CR+ TCR + K +
Sbjct: 57 PRCETTTPKCETTPPT-CRTEPPTCKTE---PPTCRTEPPTCRTEPPTCKTKPPTCRTEP 112
Query: 153 PACSMSRTWVRSV*PA----PMLPSLWKPWCRWTSSTCRWACNAMRCSPTT 13
P C R+ P P P CR T TC+ R P T
Sbjct: 113 PTCKTKPPTCRTEPPTCRTEPPTCKTKPPTCRTTPPTCKTKPPTCRTEPPT 163
Score = 31.3 bits (69), Expect = 2.5
Identities = 27/94 (28%), Positives = 34/94 (35%), Gaps = 7/94 (7%)
Query: 294 PPNNCRKP---RSTLCTSNSAPAWCRSPATTCRCSTRSA**KNTSTPVSRPACSMSRTWV 124
PP KP R+T T + P CR+ TCR + K + P C
Sbjct: 133 PPTCKTKPPTCRTTPPTCKTKPPTCRTEPPTCRTEPPTCKTKPPTCRTEPPTCKTKPPTC 192
Query: 123 RSV*PA----PMLPSLWKPWCRWTSSTCRWACNAMRCSPTT 13
R+ P P P CR TC+ R P T
Sbjct: 193 RTEPPTCRTEPPTCKTEPPTCRTEPPTCKTEPPTCRTEPPT 233
Score = 29.7 bits (65), Expect = 7.4
Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 330 DPETXFSRSHAC---PPNNCRKP---RSTLCTSNSAPAWCRSPATTCRCSTRSA**KNTS 169
+P T + C PP KP R+ T + P CR+ TCR + K +
Sbjct: 83 EPPTCRTEPPTCRTEPPTCKTKPPTCRTEPPTCKTKPPTCRTEPPTCRTEPPTCKTKPPT 142
Query: 168 TPVSRPACSMSRTWVRSV*PA----PMLPSLWKPWCRWTSSTCRWACNAMRCSPTT 13
+ P C R+ P P P CR TC+ R P T
Sbjct: 143 CRTTPPTCKTKPPTCRTEPPTCRTEPPTCKTKPPTCRTEPPTCKTKPPTCRTEPPT 198
>gi|3878597|emb|CAB04624| (Z81573) M02G9.2 [Caenorhabditis elegans]
Length = 372
Score = 32.1 bits (71), Expect = 1.5
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 174 TSTPVSRPACSMSRTWVRSV*PAPMLPSLWKPW-CRWT-SSTCRWACNA----MRCS 22
T +P P C + VR++ P LP+L+KP+ C T S+C +CN M+CS
Sbjct: 56 TCSPPVPPKCVCTEGNVRNIITGPSLPALFKPYNCVSTCESSCLESCNRLNFNMKCS 112
>gi|114063|sp|P14417|APOA_MACMU APOLIPOPROTEIN(A) (APO(A)) (LP(A)) >gi|105012|pir||A32869
apolipoprotein(a) (EC 3.4.21.-) - rhesus macaque
(fragment) >gi|342073 (J04635) apolipoprotein(a) [Macaca
mulatta]
Length = 1420
Score = 32.1 bits (71), Expect = 1.5
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 TCRCSTRSA**KNTSTPVSRPACSMSRTWVRSV*PAPMLPSLWKPWCRWTSSTCRWA-CN 37
TC+ + ++ TP + P + + + R+ P P+ PWC T + RW CN
Sbjct: 412 TCQAWSSMTPHSHSRTPENYPNAGLVKNYCRN--PDPVAA----PWCYTTDPSVRWEYCN 465
Query: 36 AMRCS 22
RCS
Sbjct: 466 LTRCS 470
Score = 30.1 bits (66), Expect = 5.6
Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
Query: 168 TPVSRPACSMSRTWVRSV*PAPMLPSLWK-PWCRWTSSTCRWA-CNAMRCSPT 16
TP + P ++R + R+ P K PWC T RW CN +CS T
Sbjct: 989 TPENYPNAGLTRNYCRN-------PDSGKHPWCYTTDPCVRWEYCNLTQCSET 1034
>gi|123406|sp|P22810|HMOC_DROME HOMEOTIC PROTEIN ORTHODENTICLE (OCELLILESS PROTEIN)
>gi|103286|pir||A35912 homeotic protein orthodenticle -
fruit fly (Drosophila melanogaster)
>gi|8312|emb|CAA41732| (X58983) orthodenticle
[Drosophila melanogaster]
Length = 671
Score = 31.7 bits (70), Expect = 1.9
Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 333 PDPETXFS--RSHACPPNNCRKPRSTLCTSNSAPAWCRSPATTCRCSTRSA**KNTST-- 166
P P T R CP R T+ TSN R PATT R ST + ++T+T
Sbjct: 464 PSPPTILPPIRPPICPIM-IRITSGTISTSNIRITMPRRPATTHRWSTLAIRIRSTTTWA 522
Query: 165 -PVSRPACSMSRTWVRSV*PAPMLPSLWKPW--CRWTSSTCRW 46
+RP + R S P P PS W CR ST W
Sbjct: 523 IRATRPPILVCRHRHPSRAPCPRRPSPRTAWITCRRRISTRIW 565
>gi|114062|sp|P08519|APOA_HUMAN APOLIPOPROTEIN(A) PRECURSOR (APO(A)) (LP(A)) >gi|86845|pir||S00657
apolipoprotein(a) (EC 3.4.21.-) precursor - human
>gi|28620|emb|CAA29618| (X06290) apolipopreprotein (a)
(AA -19 to 4529) [Homo sapiens]
Length = 4548
Score = 31.7 bits (70), Expect = 1.9
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Query: 213 TCRCSTRSA**KNTSTPVSRPACSMSRTWVRSV*PAPMLPSLWKPWCRWTSSTCRWA-CN 37
TC+ + ++ TP P + + + R+ P P+ PWC T + RW CN
Sbjct: 3468 TCQAWSSMTPHSHSRTPAYYPNAGLIKNYCRN--PDPVAA----PWCYTTDPSVRWEYCN 3521
Query: 36 AMRCS 22
RCS
Sbjct: 3522 LTRCS 3526
>gi|225794|prf||1313352A apolipoprotein a [Homo sapiens]
Length = 4548
Score = 31.7 bits (70), Expect = 1.9
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Query: 213 TCRCSTRSA**KNTSTPVSRPACSMSRTWVRSV*PAPMLPSLWKPWCRWTSSTCRWA-CN 37
TC+ + ++ TP P + + + R+ P P+ PWC T + RW CN
Sbjct: 3468 TCQAWSSMTPHSHSRTPAYYPNAGLIKNYCRN--PDPVAA----PWCYTTDPSVRWEYCN 3521
Query: 36 AMRCS 22
RCS
Sbjct: 3522 LTRCS 3526
>gi|2244707|dbj|BAA21115| (AB005287) thrombospondin 1 [Bos taurus]
Length = 1170
Score = 31.3 bits (69), Expect = 2.5
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 288 NNCRKPRSTLCTSN-----SAPAWCRSPATTCRCSTRSA**KNTSTPVSRPACSMS---- 136
N R+P LC N + W T CRC K S P+ CS +
Sbjct: 310 NELRRP--PLCYHNGVQYRTGDEWTVDSCTECRCQNSVTICKKVSCPIM--PCSNATVPD 365
Query: 135 -----RTWVRSV*PAPMLPSLWKPWCRWTSSTCRWAC 40
R W P+ W PW WTS C C
Sbjct: 366 GECCPRCW-----PSDSADDGWSPWSEWTS--CSVTC 395
>gi|139786|sp|P23507|XA1_XENLA XA-1 PROTEIN PRECURSOR >gi|104237|pir||S14456 XA-1 protein
precursor - African clawed frog >gi|65217|emb|CAA37818|
(X53821) XA-1 product [Xenopus laevis]
Length = 198
Score = 30.5 bits (67), Expect = 4.3
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 266 PRFAHRTRRPHGAVRRLRHAGAVPARRDXRTPAHP*AGRPVRCLAHG 126
P +H RP G R ++P + TP P GRP R L HG
Sbjct: 42 PPVSHDLHRPSGHPEEFRTGASLPPK---ETPNEPRHGRPKRDLHHG 85
>gi|4033395|sp|O33367|GYRB_MYXXA DNA GYRASE SUBUNIT B >gi|2578422|emb|CAA04176| (AJ000543) DNA
gyrase B subunit [Myxococcus xanthus]
Length = 815
Score = 30.1 bits (66), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Query: 258 CTSNSAPAWCRSPATTCR--CSTRSA**KNTSTPVSRPACSMSRTW 127
C + A +WCR+P+TT R CST + + P+C TW
Sbjct: 654 CWAACATSWCRTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTW 699
>gi|2808774|emb|CAA16203| (AL021411) hypothetical protein SC7H1.16 [Streptomyces coelicolor]
Length = 257
Score = 30.1 bits (66), Expect = 5.6
Identities = 21/55 (38%), Positives = 23/55 (41%)
Query: 145 TGRPAHGCAGVLXSRRAGTAPACRSRRTAPCGRRVRCAKRGAGFSTVVRWTCVAP 309
TG P G L S AG A A R RTA G RC G V+ T + P
Sbjct: 55 TGLPVLGPVVALASFLAGAATAGRVLRTAAPGWSSRCGALLGGVGLVLTATALGP 109
>gi|2760117|dbj|BAA24177| (AB000829) alpha-amylase precursor [Streptococcus bovis]
Length = 742
Score = 30.1 bits (66), Expect = 5.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 217 YDMPVQYPLGVXKEHQHTREQAGLF 143
Y PVQYPLGV Q T++ AG F
Sbjct: 672 YGNPVQYPLGVWPGTQMTKDDAGNF 696
>gi|2983590 (AE000724) cation transporting ATPase (E1-E2 family) [Aquifex
aeolicus]
Length = 664
Score = 29.7 bits (65), Expect = 7.4
Identities = 20/69 (28%), Positives = 37/69 (52%), Gaps = 2/69 (2%)
Query: 14 VVGEHRIALHAHRQVDDVHRHQGFQRLGSIGAGQTDLTHV--RDIEQAGLLTGVLVFFXH 187
++ +R+AL + +D V F + G++ G+ +T V +DIE+ L V H
Sbjct: 338 ILVRNRLALEKAKDIDVVV----FDKTGTLTEGKLGVTEVITKDIEEGEFLKFVASVENH 393
Query: 188 AERVLHRHVVA 220
+E V+ R +V+
Sbjct: 394 SEHVIARAIVS 404
>gi|538354 (M25631) thrombospondin [Homo sapiens]
Length = 397
Score = 29.7 bits (65), Expect = 7.4
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 288 NNCRKPRSTLCTSNSAP-----AWCRSPATTCRCSTRSA**KNTSTPVSRPACSMS---- 136
N R+P LC N W T C C K S P+ CS +
Sbjct: 310 NELRRP--PLCYHNGVQYRNNEEWTVDSCTECHCQNSVTICKKVSCPIM--PCSNATVPD 365
Query: 135 -----RTWVRSV*PAPMLPSLWKPWCRWTSSTCRWAC 40
R W P+ W PW WTS C +C
Sbjct: 366 GECCPRCW-----PSDSADDGWSPWSEWTS--CSTSC 395
>gi|2822406|gb|AAC82912| (AF016485) ORF H1502 [Halobacterium sp. NRC-1]
Length = 397
Score = 29.7 bits (65), Expect = 7.4
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 276 KPRSTLCTSNSAP--AWCRSPATTCRCSTRSA**KNTSTPVSRPACSMSRTW-VRSV*PA 106
K S + SN+AP +W R TRS+ T +S S++R W V S A
Sbjct: 121 KTASCVDESNAAPLGSWAR---------TRSS---GTGVTMSASTRSLTRRWAVASSMSA 168
Query: 105 PMLPSLWKPWCRWTSSTCRWACNAMRC 25
P+ + W + S C W+ C
Sbjct: 169 VSTPAASRSWANCSFSNCSWSALVSSC 195
>gi|4226144 (AF125461) contains similarity to thrombospondin type 1 domains
(Pfam:PF00090, Score=1.1 E= 0.49, N=8) [Caenorhabditis
elegans]
Length = 1360
Score = 29.7 bits (65), Expect = 7.4
Identities = 27/104 (25%), Positives = 37/104 (34%)
Query: 321 TXFSRSHACPPNNCRKPRSTLCTSNSAPAWCRSPATTCRCSTRSA**KNTSTPVSRPACS 142
T SR NC ST S APA C P T+C + + T S
Sbjct: 832 TTLSRVCLSQDYNCACSGSTTKQSECAPAPCPFPRTSCCGARKKVIVGRTFECSSADDSD 891
Query: 141 MSRTWVRSV*PAPMLPSLWKPWCRWTSSTCRWACNAMRCSPTTK 10
+ + + +V P W W T +C C + CS T+
Sbjct: 892 AAPSTLCAVDCCPAAGGYWSEWT--TGGSCPTTCGS--CSTVTQ 931
>gi|4503941|oth|NP_001476|PGBX2 gastrulation brain homeo box 2 >gi|2896814 (U31468) homeobox
protein [Homo sapiens] >gi|1588288|prf||2208304A
homeobox protein [Homo sapiens]
Length = 347
Score = 29.7 bits (65), Expect = 7.4
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 300 ACPPNNCRKPRSTLCTSNSAPAW---CRSPATTCRCSTRSA**KNTSTPVSRPACSMSRT 130
AC P+ RS C SAPAW RSP + S ++ + ++ RPA S
Sbjct: 73 ACRPHTLTT-RSPACPQASAPAWRRAWRSPLRSWPRSPAASPRRPSTRRRQRPASSR--- 128
Query: 129 WVRSV*PAPMLPSLWKPWCRWTSSTCR--WACNAMRCSPTTK 10
RS PA + S + CR T T + W A RCSP+ +
Sbjct: 129 --RSRCPA-AVTSTRRRRCRLTRRTAKASWPKRA-RCSPSPR 166
>gi|130318|sp|P20918|PLMN_MOUSE PLASMINOGEN PRECURSOR >gi|2144495|pir||PLMS plasmin (EC 3.4.21.7)
precursor - mouse >gi|200403 (J04766) plasminogen [Mus
musculus]
Length = 812
Score = 29.7 bits (65), Expect = 7.4
Identities = 12/22 (54%), Positives = 13/22 (58%), Gaps = 1/22 (4%)
Query: 81 PWCRWTSSTCRWA-CNAMRCSPT 16
PWC T + RW CN RCS T
Sbjct: 435 PWCYTTDPSVRWEYCNLKRCSET 457
>gi|2224921 (AF000606) insect intestinal mucin IIM22 [Trichoplusia ni]
Length = 807
Score = 29.7 bits (65), Expect = 7.4
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 336 APDPETXFSRSHACPPNNCRKPRSTLC-TSNSAPAWCRSPATTCRCSTRSA**KNTSTPV 160
AP T + P + P +T T+ AP ATT +T +A T+
Sbjct: 160 APTTTTQAPTTTTQAPTTTQAPTTTQAPTTTQAPTTITQAATTPAATTPAA----TTPAA 215
Query: 159 SRPACSMSRTWVRSV*PAPMLPSLWKPWCRWTSSTC 52
+ PA + V PAP +W P C + C
Sbjct: 216 TTPAATTPAATTPGV-PAPTSAPVWPPICELLPNGC 250
>gi|135717|sp|P07996|TSP1_HUMAN THROMBOSPONDIN 1 PRECURSOR >gi|1070640|pir||TSHUP1 thrombospondin 1
precursor - human >gi|37138|emb|CAA28370| (X04665)
precursor polypeptide (AA -18 to 1152) [Homo sapiens]
>gi|225479|prf||1304281A thrombospondin [Homo sapiens]
Length = 1170
Score = 29.7 bits (65), Expect = 7.4
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 288 NNCRKPRSTLCTSNSAP-----AWCRSPATTCRCSTRSA**KNTSTPVSRPACSMS---- 136
N R+P LC N W T C C K S P+ CS +
Sbjct: 310 NELRRP--PLCYHNGVQYRNNEEWTVDSCTECHCQNSVTICKKVSCPIM--PCSNATVPD 365
Query: 135 -----RTWVRSV*PAPMLPSLWKPWCRWTSSTCRWAC 40
R W P+ W PW WTS C +C
Sbjct: 366 GECCPRCW-----PSDSADDGWSPWSEWTS--CSTSC 395
>gi|4507485|oth|NP_003237|PTHBS1 thrombospondin 1 >gi|37465|emb|CAA32889| (X14787) precursor
polypeptide (AA -31 to 1139) [Homo sapiens]
Length = 1170
Score = 29.7 bits (65), Expect = 7.4
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 288 NNCRKPRSTLCTSNSAP-----AWCRSPATTCRCSTRSA**KNTSTPVSRPACSMS---- 136
N R+P LC N W T C C K S P+ CS +
Sbjct: 310 NELRRP--PLCYHNGVQYRNNEEWTVDSCTECHCQNSVTICKKVSCPIM--PCSNATVPD 365
Query: 135 -----RTWVRSV*PAPMLPSLWKPWCRWTSSTCRWAC 40
R W P+ W PW WTS C +C
Sbjct: 366 GECCPRCW-----PSDSADDGWSPWSEWTS--CSTSC 395
>gi|2224919 (AF000605) insect intestinal mucin IIM14 [Trichoplusia ni]
Length = 788
Score = 29.7 bits (65), Expect = 7.4
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 336 APDPETXFSRSHACPPNNCRKPRSTLC-TSNSAPAWCRSPATTCRCSTRSA**KNTSTPV 160
AP T + P + P +T T+ AP ATT +T +A T+
Sbjct: 160 APTTTTQAPTTTTQAPTTTQAPTTTQAPTTTQAPTTITQAATTPAATTPAA----TTPAA 215
Query: 159 SRPACSMSRTWVRSV*PAPMLPSLWKPWCRWTSSTC 52
+ PA + V PAP +W P C + C
Sbjct: 216 TTPAATTPAATTPGV-PAPTSAPVWPPICELLPNGC 250
>gi|136880|sp|P28952|UL32_HSVEB MAJOR ENVELOPE GLYCOPROTEIN 300 (GP300) (G2) >gi|73924|pir||WZBEC1
gene 28 protein - equine herpesvirus 1 (strain Ab4p)
>gi|259585|bbs|117798 glycoprotein 300, gp300 [equine
herpesvirus type 1 EVH-1, Ab-1, Peptide, 620 aa]
>gi|330820 (M86664) virion protein [Equine herpesvirus
1] >gi|330920 (M84239) membrane glycoprotein [Equine
herpesvirus type 1]
Length = 620
Score = 29.7 bits (65), Expect = 7.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 127 PCARHRTGRPAHGCAGVLXSRRAGTAPACRSRRTAPCGRRVRCA 258
P RH GRPA G GV ++ T A S + C + + C+
Sbjct: 252 PHGRHGAGRPADGGGGVFGPKQQSTVAALMSWK--ECAKMIDCS 293
>gi|266801|sp|Q01177|PLMN_RAT PLASMINOGEN >gi|321331|pir||A40522 plasmin (EC 3.4.21.7) precursor
- rat (fragment) >gi|554488 (M62832) plasminogen [Rattus
norvegicus]
Length = 169
Score = 29.3 bits (64), Expect = 9.7
Identities = 12/22 (54%), Positives = 13/22 (58%), Gaps = 1/22 (4%)
Query: 81 PWCRWTSSTCRWA-CNAMRCSPT 16
PWC T + RW CN RCS T
Sbjct: 93 PWCFTTDPSVRWEYCNLKRCSET 115
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78888725
Number of Sequences: 369800
Number of extensions: 1761966
Number of successful extensions: 5639
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5579
Number of HSP's gapped (non-prelim): 71
length of query: 115
length of database: 113,023,754
effective HSP length: 51
effective length of query: 63
effective length of database: 94163954
effective search space: 5932329102
effective search space used: 5932329102
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)