BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII31R
(694 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3845326 (AE001430) hypothetical protein [Plasmodium falciparum] 34 0.81
gi|2688426 (AE001153) B. burgdorferi predicted coding region BB0... 34 0.81
gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P... 34 1.4
gi|3256966|dbj|BAA29649| (AP000002) 641aa long hypothetical prot... 33 2.4
gi|3647346|emb|CAB10570| (Z97348) predicted using hexExon; MAL3P... 32 3.1
gi|3875981|emb|CAB02949| (Z81062) similar to 7TM receptor [Caeno... 32 5.3
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 31 9.2
>gi|3845326 (AE001430) hypothetical protein [Plasmodium falciparum]
Length = 302
Score = 34.4 bits (77), Expect = 0.81
Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 9/183 (4%)
Query: 606 DKQKHEKFLHFKNKIFKAYFFEDLLFNVKNVVMRENVLQSVNGLQSLNQKMKNFVNFIKT 427
+K + + + NKI ++ E+ N++ N ++ N ++ N N + T
Sbjct: 72 NKIEEQNIIEESNKIEESNKIEE-----PNIIEESNEIEESNKIEESNIIEPNIIEESNT 126
Query: 426 YGQMLKNHEMN----NIIEEMRTIGXXXXXXXXXLVNDRHILFVPLNMKPLSKYKKVRRN 259
+ K E N NIIEE TI ++ + + + ++ +++ K RN
Sbjct: 127 IEESNKIEESNIIEPNIIEESNTIEESNKIEESNIIEESNTIEEQNKIEKVNQTKSPLRN 186
Query: 258 IFFYSDKYATKIFI-----ESLYRXXXXXXXXXXXXNKESLLCKCIGSNEIFMYKRGESK 94
+ KI E L R + E + + G + ++Y ESK
Sbjct: 187 HQIQINNTIDKIIQNSNGDEKLQRLKSTSWLINNMESSEEVKQRLRGLAQSYIYNPDESK 246
Query: 93 ITKMLEYIDKFS 58
K+++ I K+S
Sbjct: 247 KRKIIKEIYKYS 258
>gi|2688426 (AE001153) B. burgdorferi predicted coding region BB0512 [Borrelia
burgdorferi]
Length = 2166
Score = 34.4 bits (77), Expect = 0.81
Identities = 43/190 (22%), Positives = 90/190 (46%), Gaps = 21/190 (11%)
Query: 630 KEIEIAIDDKQKH--EKFLHFKNKIFKAYFFEDLLFNVKNVVMRENVLQSVNGLQSLNQK 457
KE++ +I+ + + EK F+N+ A + ++LL ++ N +E N +
Sbjct: 910 KELKFSIESLESYYLEKIDEFRNQ--GAIYSDELLQDIMNHFNKETRELEENLSKKFAAV 967
Query: 456 MKNFVNFIKTYGQMLKNHEMNNIIEEMRTIGXXXXXXXXXLVNDRHILFVPLNMKPLSKY 277
+ N F+K E+++++++ RT ++ ++ F +N + KY
Sbjct: 968 LNNSEEFVK---------EVDSLLQDKRTDIASFQANIDITLDSLNVKFNDINKEINGKY 1018
Query: 276 KKVRRNIFFYSDKYATKI------FIESLYRXXXXXXXXXXXXNKESLLCKCIGSNEIFM 115
+V N YS+ ++K+ IE+L R E+L K S ++
Sbjct: 1019 NEVISNYRGYSENISSKLENEIMHEIENLSRRLTDRIDSLSKGMDENLQ-KLKESFDVSK 1077
Query: 114 YK-------------RGESKITKMLEYIDKF 61
Y+ GE+KI K+++ I+++
Sbjct: 1078 YQVEKFELKVKDLTDDGEAKINKLVKEIEQY 1108
>gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P6.11 (PFC0760c), Hypothetical
protein, len: 3395 aa [Plasmodium falciparum]
Length = 3394
Score = 33.6 bits (75), Expect = 1.4
Identities = 30/92 (32%), Positives = 51/92 (54%), Gaps = 6/92 (6%)
Query: 642 KRCKKEI----EIAIDDKQKHEKFLHF-KNKIFKAYFFEDLLFNVKNVVMRENVLQSV-N 481
K K+EI EI + +KH++FL K+ K + LL + K+ + V++ + N
Sbjct: 1631 KNSKEEISRLKEICKEQLEKHKEFLLINKSNEDKLKYINSLLCDEKDKY--DIVVKDIKN 1688
Query: 480 GLQSLNQKMKNFVNFIKTYGQMLKNHEMNNIIEEMRTI 367
+++ K+ N +N K+Y L HE NN+I EM +
Sbjct: 1689 NMRNEIDKLNNDINE-KSYEIKLLKHENNNLINEMNIL 1725
>gi|3256966|dbj|BAA29649| (AP000002) 641aa long hypothetical protein [Pyrococcus horikoshii]
Length = 641
Score = 32.8 bits (73), Expect = 2.4
Identities = 16/71 (22%), Positives = 42/71 (58%)
Query: 32 PSKEEQIAKLNLSIYSSIFVILDSPLLYINISFEPIHLHNKLSLFNRTFKLGRRIFNLYN 211
P +EE++ + + + +F + ++P++Y+N++F P +L N++ K+GR + + +
Sbjct: 66 PGEEEKVGDVKVKV-EKVF-LGENPMVYLNVTFPP-------ALINQSIKVGRYVIRVKD 116
Query: 212 DSINIFVAYLS 244
+++ F +S
Sbjct: 117 VTVDSFEVTVS 127
>gi|3647346|emb|CAB10570| (Z97348) predicted using hexExon; MAL3P1.7 (PFC0125w), ABC
transporter, len: 1365; Three regions of moderate
similarity to ABC transporters, especially those from
compositionally biased genomes such as Dictyostelium and
P.fal...
Length = 1365
Score = 32.5 bits (72), Expect = 3.1
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 618 IAIDDKQKHEKFLHFKNKIFKAYFFEDLLFNVKNVVMRENVLQSVNGLQSLNQKMKNFVN 439
++I DK+ K + NK L +N ++ QK KNF+N
Sbjct: 743 LSIKDKKSILKMSNITNKTIYIILLTFLFYNYSKFYYKK-------------QKKKNFIN 789
Query: 438 FIKTYGQMLKNHE 400
FI+ +MLKN++
Sbjct: 790 FIEKKNKMLKNNQ 802
>gi|3875981|emb|CAB02949| (Z81062) similar to 7TM receptor [Caenorhabditis elegans]
Length = 331
Score = 31.7 bits (70), Expect = 5.3
Identities = 22/58 (37%), Positives = 30/58 (50%), Gaps = 2/58 (3%)
Query: 512 TTFLTLNSRSSKKYALKILFLKCRNCLSSIAI--SISFLHLLAASFKSFFKDISFY 685
TT LTL+S S ILF F C S+ + IS L ++ S + +FKD SF+
Sbjct: 3 TTNLTLDSESICDPNYDILFENAIYFVTACYLSVGLFCHISLLKIILISDRKYFKDNSFF 62
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 30.9 bits (68), Expect = 9.2
Identities = 31/125 (24%), Positives = 55/125 (43%), Gaps = 5/125 (4%)
Query: 588 KFLHFKNKIFKAYFFEDLLFN----VKNVVMRENVLQSVNGLQSLNQKMKN-FVNFIKTY 424
K+L+ N YF ++L +N + N ++ +N N +L Q KN +N Y
Sbjct: 625 KYLYKYNININLYFIKNLFYNNNNFIHNHIIYKNNYYIYNNNMNLYQYNKNILINNNLLY 684
Query: 423 GQMLKNHEMNNIIEEMRTIGXXXXXXXXXLVNDRHILFVPLNMKPLSKYKKVRRNIFFYS 244
++ N+ NNI +ND I +N+ + + K ++ NIFF S
Sbjct: 685 NKLFYNYINNNIYN--------------LYLNDITIGLQSINI--IFENKNIKDNIFFIS 728
Query: 243 DKYATKIFIE 214
+ +I+
Sbjct: 729 NNIYVIFYIK 738
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98476205
Number of Sequences: 369800
Number of extensions: 1716663
Number of successful extensions: 5030
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5028
Number of HSP's gapped (non-prelim): 11
length of query: 231
length of database: 113023754
effective HSP length: 53
effective length of query: 177
effective length of database: 93424354
effective search space: 16536110658
effective search space used: 16536110658
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)