BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII24R
(485 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2128750|pir||E64456 hypothetical protein MJ1254 - Methanococc... 34 0.65
gi|1151158 (U43145) repeat organellar protein [Plasmodium chabaudi] 33 1.1
gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL... 33 1.5
gi|2499178|sp|Q46089|YRO1_CAMJE HYPOTHETICAL 107.7 KD PROTEIN IN... 33 1.5
gi|2447060 (U42580) A559L [Paramecium bursaria Chlorella virus 1] 32 2.5
gi|291486 (L05355) polyprotein [Human rhinovirus 14] 31 4.3
gi|61083|emb|CAA25565| (X01087) polyprotein [Human rhinovirus] 31 4.3
gi|130480|sp|P03303|POLG_HRV14 GENOME POLYPROTEIN [CONTAINS: COA... 31 4.3
gi|330030 (K02121) HRV14 polyprotein precursor [Human rhinovirus] 31 4.3
gi|3764008|emb|CAA15601| (AL008970) predicted using hexExon; MAL... 31 5.7
gi|2194196 (U61158) GdmH [Staphylococcus gallinarum] 31 5.7
gi|2467273|emb|CAB16903| (Z99759) ubiquitin protein ligase [Schi... 30 9.7
gi|3878959|emb|CAA89071| (Z49207) Serine and threonine rich prot... 30 9.7
gi|4582571|emb|CAB40350| (AJ131892) Hyperion protein, 419 kD iso... 30 9.7
>gi|2128750|pir||E64456 hypothetical protein MJ1254 - Methanococcus jannaschii >gi|1591888
(U67566) M. jannaschii predicted coding region MJ1254
[Methanococcus jannaschii]
Length = 469
Score = 34.0 bits (76), Expect = 0.65
Identities = 15/43 (34%), Positives = 29/43 (66%)
Query: 392 VTEYKNIEKKQNVYNGFVEELTHKILEKEKEVNNFTLKIKEID 264
+++ K IE+ +N+ N L +K+ EKE+E+ N +KIK+++
Sbjct: 273 ISKRKIIERTKNIKNELTS-LKNKLKEKEEEIKNLAIKIKDLE 314
>gi|1151158 (U43145) repeat organellar protein [Plasmodium chabaudi]
Length = 1939
Score = 33.2 bits (74), Expect = 1.1
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Query: 422 RKTKTKKVDLVTEY-KNIEKKQNVYNGFVEELTHKILEKEKEVNNFTLKIKEIDVLEQNX 246
+K ++V+ EY + I K + V N + KILEKE E+ K+ V E
Sbjct: 1113 KKQILEEVEKRNEYNEEINKLKIVQNEMKDMNDKKILEKENEIKKLNKKLSNYKVFETKE 1172
Query: 245 NQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFVEVKIEELSSAKENNLKKIS-NTN 69
N Y K +K+ KE N+ I+ N N
Sbjct: 1173 NTYKNSEMVVNENKERIIVDSVCKENISESDVEGKGGNLKMTLSLKKKERNIFSINDNKN 1232
Query: 68 E-------------NVIELFEKEVIIETKNITSL 6
E N IE+++KE+ KNI L
Sbjct: 1233 ESSELVDTIKSAYINKIEMYKKEIEDNGKNIEDL 1266
>gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL3P7.21 (PFC0960c),
Hypothetical protein, len: 1929 aa [Plasmodium
falciparum]
Length = 1928
Score = 32.8 bits (73), Expect = 1.5
Identities = 17/34 (50%), Positives = 26/34 (76%), Gaps = 5/34 (14%)
Query: 374 IEKKQNVYNGF---VEELTHKI--LEKEKEVNNFTLKIK 273
+++KQN+ N +E++ HKI + KEKE N T+KIK
Sbjct: 1700 VDQKQNIINNMKEQIEDVNHKIASINKEKEELNTTIKIK 1738
>gi|2499178|sp|Q46089|YRO1_CAMJE HYPOTHETICAL 107.7 KD PROTEIN IN RPSO 5'REGION (ORF1)
>gi|2120542|pir||I40772 hypothetical protein 1 -
Campylobacter jejuni >gi|633732 (U06951) ORF1
[Campylobacter jejuni]
Length = 941
Score = 32.8 bits (73), Expect = 1.5
Identities = 18/55 (32%), Positives = 31/55 (55%), Gaps = 2/55 (3%)
Query: 419 KTKTKKVDLVTEYKNIEKKQNVYN--GFVEELTHKILEKEKEVNNFTLKIKEIDVLE 255
K +T++ D + E KN++K N++ VEEL H +E N + I+E + L+
Sbjct: 372 KAETEESDKINENKNLDKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLD 428
>gi|2447060 (U42580) A559L [Paramecium bursaria Chlorella virus 1]
Length = 213
Score = 32.1 bits (71), Expect = 2.5
Identities = 20/61 (32%), Positives = 35/61 (56%), Gaps = 2/61 (3%)
Query: 446 KQRDLNF*RKTKTKKVDLVTEYKNIEKKQNVYNGFVEELTHKILEKEK--EVNNFTLKIK 273
K+ +LN + +K VDL+ + + + K +V+ LT I EKEK ++NN +I+
Sbjct: 132 KKNELNAQKSASSKYVDLIKQIEQEKMKASVF------LTGNITEKEKIAKINNIDAEIE 185
Query: 272 EID 264
+D
Sbjct: 186 IVD 188
>gi|291486 (L05355) polyprotein [Human rhinovirus 14]
Length = 2179
Score = 31.3 bits (69), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 398 DLVTEYKNIEKKQNVYNGFVEELTHKILEKEKEVNNFTLKIKEIDVLEQ 252
D K +E N + +E + +K+L + KE F K+K++D+LE+
Sbjct: 1110 DACNAAKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDILER 1158
>gi|61083|emb|CAA25565| (X01087) polyprotein [Human rhinovirus]
Length = 2179
Score = 31.3 bits (69), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 398 DLVTEYKNIEKKQNVYNGFVEELTHKILEKEKEVNNFTLKIKEIDVLEQ 252
D K +E N + +E + +K+L + KE F K+K++D+LE+
Sbjct: 1110 DACNAAKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDILER 1158
>gi|130480|sp|P03303|POLG_HRV14 GENOME POLYPROTEIN [CONTAINS: COAT PROTEINS VP1 TO VP4; CORE PROTEINS
P2A TO P2C, P3A; GENOME-LINKED PROTEIN VPG; PICORNAIN 3C
(PROTEASE 3C) (P3C); RNA-DIRECTED RNA POLYMERASE P3D ]
>gi|74431|pir||GNNYH4 genome polyprotein - human
rhinovirus 14
Length = 2179
Score = 31.3 bits (69), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 398 DLVTEYKNIEKKQNVYNGFVEELTHKILEKEKEVNNFTLKIKEIDVLEQ 252
D K +E N + +E + +K+L + KE F K+K++D+LE+
Sbjct: 1110 DACNAAKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDILER 1158
>gi|330030 (K02121) HRV14 polyprotein precursor [Human rhinovirus]
Length = 2179
Score = 31.3 bits (69), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 398 DLVTEYKNIEKKQNVYNGFVEELTHKILEKEKEVNNFTLKIKEIDVLEQ 252
D K +E N + +E + +K+L + KE F K+K++D+LE+
Sbjct: 1110 DACNAAKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDILER 1158
>gi|3764008|emb|CAA15601| (AL008970) predicted using hexExon; MAL3P4.10 (PFC0515c),
Hypothetical protein, len: 1237 aa [Plasmodium
falciparum]
Length = 1236
Score = 30.9 bits (68), Expect = 5.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 259 NTSISFIFNVKLFTSFSFSNILCVNSSTNPLY 354
N I ++N+ ++T+F F NI+ ++TN Y
Sbjct: 1087 NACIKLVYNLSIYTNFIFKNIIYDQTNTNEYY 1118
>gi|2194196 (U61158) GdmH [Staphylococcus gallinarum]
Length = 330
Score = 30.9 bits (68), Expect = 5.7
Identities = 17/36 (47%), Positives = 22/36 (60%)
Query: 339 NKSIVYILFLFYVFIFSYQIYFFCLCFSLKIQISLF 446
NKS+ +F+ Y+FI S IYF L S I +SLF
Sbjct: 115 NKSLASYIFVVYIFIVSLLIYFLSLFI-LSLF 149
>gi|2467273|emb|CAB16903| (Z99759) ubiquitin protein ligase [Schizosaccharomyces pombe]
Length = 786
Score = 30.1 bits (66), Expect = 9.7
Identities = 21/53 (39%), Positives = 35/53 (65%), Gaps = 6/53 (11%)
Query: 419 KTKTKKVDLVTEY---KNIEKKQNV-YNGFVEELTHKILE--KEKEVNNFTLKIKEIDV 261
+ K K VDLVTE+ K +E++ N Y+GFVE ++ ++ E+E+ I ++DV
Sbjct: 615 ENKKKYVDLVTEWRVSKRVEQQFNAFYSGFVELVSPDLVNVFDERELELLIGGISDVDV 673
>gi|3878959|emb|CAA89071| (Z49207) Serine and threonine rich protein, Carboxyl terminus is
glycine rich; cDNA EST EMBL:C08296 comes from this gene;
cDNA EST yk259b4.5 comes from this gene [Caenorhabditis
elegans]
Length = 927
Score = 30.1 bits (66), Expect = 9.7
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 128 KIEELSSAKENNLKKISNTNENVIELFEKEVIIETKNIT 12
K+EE+ KE L + +V E+FEKEV+I+T +T
Sbjct: 276 KLEEIYK-KEEELVERELAEMSVAEIFEKEVVIKTTKVT 313
>gi|4582571|emb|CAB40350| (AJ131892) Hyperion protein, 419 kD isoform [Gallus gallus]
Length = 3616
Score = 30.1 bits (66), Expect = 9.7
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 410 TKKVDLVTEYKNIEK-KQNVYNGFVEELTHKILEKEKEVNNFTLKIKEIDVLEQNXNQ 240
TK+ LV E ++ +Q++ N EE+T +I E +KE+ + KE LEQ +
Sbjct: 374 TKQNQLVLEISKLKDLQQSIVNSKSEEMTLQIHELQKEIEVLRQEEKEKGTLEQEIQE 431
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48124357
Number of Sequences: 369800
Number of extensions: 647701
Number of successful extensions: 4242
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4230
Number of HSP's gapped (non-prelim): 22
length of query: 161
length of database: 113,023,754
effective HSP length: 52
effective length of query: 109
effective length of database: 93794154
effective search space: 10223562786
effective search space used: 10223562786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)