BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-8F
         (734 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa...    39  0.026
gi|1171592|emb|CAA64576| (X95276) rps4 [Plasmodium falciparum]         33  2.0
gi|3874607|emb|CAB05685| (Z83218) C31A11.3 [Caenorhabditis elegans]    31  7.6


>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
            Length = 960
            
 Score = 39.5 bits (90), Expect = 0.026
 Identities = 37/117 (31%), Positives = 61/117 (51%), Gaps = 14/117 (11%)

Query: 361  FLKFSYFYVLSL-LYIRXKQDFF*NLIITNYITKKE*IQINNLRIFYYRYK*NILKNSYF 537
            ++K+ Y Y +++ LY      +  N  I N+I  K    I N  +  Y+Y  NIL N+  
Sbjct: 623  YIKYLYKYNININLYFIKNLFYNNNNFIHNHIIYKNNYYIYNNNMNLYQYNKNILINNNL 682

Query: 538  MFS-LYYIYIRHK*VFLKL-----------LIKTNYTIKR**IQI-NNLRIFYYSYKTNI 678
            +++ L+Y YI +    L L           +I  N  IK     I NN+ + +Y    N 
Sbjct: 683  LYNKLFYNYINNNIYNLYLNDITIGLQSINIIFENKNIKDNIFFISNNIYVIFYIKYYNY 742

Query: 679  LKNFIFMLSLC 711
            L N I++ ++C
Sbjct: 743  LNNIIYIYNIC 753



>gi|1171592|emb|CAA64576| (X95276) rps4 [Plasmodium falciparum]
           Length = 208
           
 Score = 33.2 bits (74), Expect = 2.0
 Identities = 37/113 (32%), Positives = 59/113 (51%), Gaps = 20/113 (17%)

Query: 376 YFYVLSLLYIRX-----KQDFF*NLIITNYITKKE*IQINNLRIFYY------------- 501
           YF +L +L +R         FF  ++ + Y  K + I INN+   YY             
Sbjct: 79  YFKLLKILELRLDIFLVNIGFFKTILQSRYYIKYKNIYINNIINKYYNINLKNNDILFFN 138

Query: 502 -RYK*NILKNSYFMFSLY-YIYIRHK*VFLKLLIKTNYTIKR**IQINNLRIFYYSYKTN 675
            + K  ILKN  + +++Y YI   +K  F+K+     Y I    I I N +I   +   N
Sbjct: 139 NKIKYIILKNLIYKYNIYIYISNLYKYNFIKIYSYNKYFI----ICIYNFKIKILNI-NN 193

Query: 676 ILKNFIFMLSLCY 714
           IL N +++ +  Y
Sbjct: 194 ILNNILYIYNDIY 206



>gi|3874607|emb|CAB05685| (Z83218) C31A11.3 [Caenorhabditis elegans]
           Length = 405
           
 Score = 31.3 bits (69), Expect = 7.6
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 448 YITKKE*IQINNL---RIFYYRYK*NILKNSYFMFSLYYIYIRHK*VFLKLLIKTNYTIK 618
           Y+TK   + +  L   RI + R K + +  +   F  Y I+I      L+  +  + +I+
Sbjct: 171 YVTKTLGLMVEALITYRILFGRKKVSPIPGTPLTF--YLIWISSSFGSLRATVALSISIE 228

Query: 619 R**IQINNLRIFYYSYKTNILKNFIFMLSLCYI 717
           R         IFYY+Y+ N+L  F++   +C +
Sbjct: 229 R--AVATLFPIFYYNYRQNLLNCFVWFFIICIV 259


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85135767
Number of Sequences: 369800
Number of extensions: 1272475
Number of successful extensions: 1613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 9
length of query: 244
length of database: 113,023,754
effective HSP length: 53
effective length of query: 191
effective length of database: 93424354
effective search space: 17844051614
effective search space used: 17844051614
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)