BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII-57F
(588 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3873644|emb|CAA94865| (Z71177) AC3.1 [Caenorhabditis elegans] 34 1.1
gi|220579|dbj|BAA00448| (D00570) open reading frame (196 AA) [Mu... 33 1.9
gi|111013|pir||A21124 Sxr (Bkm-homolog) sex-determining region p... 32 2.5
gi|3876097|emb|CAA99837| (Z75537) F18E2.4 [Caenorhabditis elegans] 31 5.6
gi|1665787|dbj|BAA13390| (D87449) Similar to a C.elegans protein... 31 5.6
gi|4049878 (AF063866) ORF MSV035 hypothetical protein [Melanoplu... 31 7.3
gi|2384671 (AF012657) putative potassium transporter AtKT2p [Ara... 31 7.3
>gi|3873644|emb|CAA94865| (Z71177) AC3.1 [Caenorhabditis elegans]
Length = 356
Score = 33.6 bits (75), Expect = 1.1
Identities = 29/147 (19%), Positives = 60/147 (40%)
Query: 2 NSIYHLYIYLFAFIPIVISTTIYLTIPMPSYTLLCLSEFLRGITNYLGNVYGPIITTTMI 181
N Y + I+L P++ ++ +YL ++L SE + + + N+ +
Sbjct: 100 NVTYCIVIFLLNIYPVIAASLLYL-------SMLNKSEQVELVKSVYPNLVDKFASLPNY 152
Query: 182 KNKNYKFAAMAAYNMVFFGINKSLAGSIMLYYLWKKENDINNHTTYTNVMNFSKHNITSD 361
+ A+ + +FFG +L + Y K D N + + N++KH T
Sbjct: 153 VVFDSNIWAIVFFAFIFFGCTYTLVLIVTTTYQMFKILDDNR--KHISASNYAKHRATLR 210
Query: 362 TFKSVFITSIIVLTIGILALLIFTVHY 442
+ + F T +++ L L+ + Y
Sbjct: 211 SLLAQFTTCFLIVGPASLFSLLVVIRY 237
>gi|220579|dbj|BAA00448| (D00570) open reading frame (196 AA) [Mus musculus]
Length = 196
Score = 32.8 bits (73), Expect = 1.9
Identities = 32/129 (24%), Positives = 69/129 (52%), Gaps = 11/129 (8%)
Query: 5 SIYHLYIYLFAFIPIVISTTIYLTIPMPSYT---LLCLSEFLRGITNYLGNVYGPIITTT 175
SIYH+ +Y + +I +IYL+I + Y L CL+ +L ++ YL +VY + +
Sbjct: 29 SIYHMSVYHLSIYLSIIYLSIYLSIYLSIYLSIYLSCLTVYLSCLSVYL-SVYHMSVCLS 87
Query: 176 M--------IKNKNYKFAAMAAYNMVFFGINKSLAGSIMLYYLWKKENDINNHTTYTNVM 331
+ I Y ++ Y+M F ++ L+ + Y++ + + +TY +
Sbjct: 88 IYLSYVCLSIYLSIYVSIYLSIYHMSVFHLSVCLSIYLSTYHM-----SVYHPSTYHMLS 142
Query: 332 NFSKHNITSDTFKSVFITSI 391
S ++++ + S++++SI
Sbjct: 143 ISSTYHMS--VYSSIYLSSI 160
>gi|111013|pir||A21124 Sxr (Bkm-homolog) sex-determining region protein - mouse
Length = 55
Score = 32.5 bits (72), Expect = 2.5
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 2 NSIYHLYIYLFAFIPIVISTTIYLTI 79
+SIYHL IYL ++ I +S+ +YL+I
Sbjct: 19 SSIYHLSIYLSIYLSIYVSSVVYLSI 44
>gi|3876097|emb|CAA99837| (Z75537) F18E2.4 [Caenorhabditis elegans]
Length = 350
Score = 31.3 bits (69), Expect = 5.6
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 224 MVFFGINKSLAGSIMLYYLWKKENDINNHTTYTNVMNFSKHN 349
+++ +NK++ + + KK N +NN T+++N MN SK N
Sbjct: 308 IIYLTMNKTIRTEFLKFLKLKKTNKVNNATSFSN-MNTSKSN 348
>gi|1665787|dbj|BAA13390| (D87449) Similar to a C.elegans protein encoded in cosmid C52E12
(U50135) [Homo sapiens]
Length = 383
Score = 31.3 bits (69), Expect = 5.6
Identities = 24/87 (27%), Positives = 42/87 (47%), Gaps = 9/87 (10%)
Query: 74 TIPMPSYTLLCLSEFLRGITNYLGNVYGPIITTTM---IKNKNYKFAAMAAYNMVFF--- 235
T+ + +TL C+ F+ L Y +TTT+ IKN + M F
Sbjct: 281 TLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIGMVFGGDYIFTWT 340
Query: 236 ---GINKSLAGSIMLYYLWKKENDINNHTTYTNVMN 334
G+N S+AGS++ Y+ E ++ + N ++
Sbjct: 341 NFIGLNISIAGSLVYSYITFTEEQLSKQSEANNKLD 376
>gi|4049878 (AF063866) ORF MSV035 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 439
Score = 30.9 bits (68), Expect = 7.3
Identities = 20/69 (28%), Positives = 37/69 (52%)
Query: 218 YNMVFFGINKSLAGSIMLYYLWKKENDINNHTTYTNVMNFSKHNITSDTFKSVFITSIIV 397
Y+ + IN + SI +Y+ + N I NH Y N++N +N +D + ++I +II
Sbjct: 273 YDEIIELINCNNVSSISIYFYF---NSIKNHPIYKNIINEYINN--NDINRLLYIINIIQ 327
Query: 398 LTIGILALL 424
L I + ++
Sbjct: 328 LPINTIYVI 336
>gi|2384671 (AF012657) putative potassium transporter AtKT2p [Arabidopsis
thaliana]
Length = 794
Score = 30.9 bits (68), Expect = 7.3
Identities = 20/73 (27%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 68 YLTIPMPSYTLLCLSEFLRGITNYLGNVYGPIITTTMIKNKNYKFAAMAAYNMVFFG--I 241
Y IP+ + L+CL T+ +G V+ PI+ T ++ + + YN++ + I
Sbjct: 194 YAVIPITCFILVCLFSLQHFGTHRVGFVFAPIVLTWLL-----CISGIGLYNIIQWNPHI 248
Query: 242 NKSLAGSIMLYYLWK 286
K+L+ + M +L K
Sbjct: 249 YKALSPTYMFMFLRK 263
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94221201
Number of Sequences: 368476
Number of extensions: 1704291
Number of successful extensions: 4586
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4580
Number of HSP's gapped (non-prelim): 8
length of query: 196
length of database: 112640273
effective HSP length: 53
effective length of query: 142
effective length of database: 93111045
effective search space: 13221768390
effective search space used: 13221768390
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)