BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII-56F
(716 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3256608|dbj|BAA29291| (AP000001) 235aa long hypothetical prot... 50 8e-08
gi|1545805|dbj|BAA10929| (D64052) cytochrome P450 like_TBP [Nico... 47 1e-04
gi|2995384|emb|CAA06156| (AJ004810) cytochrome P450 monooxygenas... 46 3e-04
gi|3560521 (AF033212) major surface glycoprotein [Pneumocystis c... 32 3.3
gi|3560517 (AF033210) major surface glycoprotein [Pneumocystis c... 32 5.6
gi|3560519 (AF033211) major surface glycoprotein [Pneumocystis c... 32 5.6
gi|3560515 (AF033209) major surface glycoprotein [Pneumocystis c... 31 7.3
>gi|3256608|dbj|BAA29291| (AP000001) 235aa long hypothetical protein [Pyrococcus horikoshii]
Length = 235
Score = 49.6 bits (116), Expect(2) = 8e-08
Identities = 24/41 (58%), Positives = 27/41 (65%)
Query: 269 GQWESRHSIHARHHLNDEAFGYLKRVIVTPAVNPCFLEFPP 147
GQ R++IHA HL D+ F YLKRVIVTPAV CF P
Sbjct: 25 GQRGPRYAIHAGRHLTDKEFRYLKRVIVTPAVYRCFTRLYP 65
Score = 27.8 bits (60), Expect(2) = 8e-08
Identities = 16/31 (51%), Positives = 19/31 (60%), Gaps = 3/31 (9%)
Query: 93 VFTKXSDSPCHNEFTI---EPILLPKLRIHFAEF 1
VF K S P H + + + LLPKLR FAEF
Sbjct: 89 VFIKQSGPPSHCDLRVTHPQAPLLPKLRGQFAEF 122
>gi|1545805|dbj|BAA10929| (D64052) cytochrome P450 like_TBP [Nicotiana tabacum]
Length = 530
Score = 46.9 bits (109), Expect = 1e-04
Identities = 34/76 (44%), Positives = 40/76 (51%)
Query: 394 TFLHRLNRHNLATLESSSTGSSFPAGRPGPFPWKWVR*STCRDSGNLVIPFMRVTI*MTR 215
T+ L + LESSSTGSSFPA P P V + +DSG + + VT MTR
Sbjct: 56 TYTTPLKSFHKVGLESSSTGSSFPADSAKPVPLVVVSLDSRQDSG-ISLSIHAVTNKMTR 114
Query: 214 RLATLRES*LLPPLTR 167
LATLRES P R
Sbjct: 115 HLATLRESCYSPVYPR 130
Score = 42.6 bits (98), Expect = 0.003
Identities = 56/148 (37%), Positives = 76/148 (50%), Gaps = 40/148 (27%)
Query: 488 RPSQTPHLAFVLEQVCRDD--------------HG-------AVVFHFXCALHLPTSP-- 378
RPSQTPHL ++ HG VVFHF + T+P
Sbjct: 3 RPSQTPHLTMSSARIGLQASLGSKKRGSAPLPIHGISKITLKVVVFHFRLSAPTYTTPLK 62
Query: 377 -------QSSQLGHSRVKLNRVFFPRWPSRPVPLEMGSLVYM*GQWESRH------SIHA 237
+SS G S FP ++PVPL + SL +SR SIHA
Sbjct: 63 SFHKVGLESSSTGSS--------FPADSAKPVPLVVVSL-------DSRQDSGISLSIHA 107
Query: 236 RHHLNDEAFGYLKRVIVTPAVNPCFLEFPPCHDRAPGRTHLISLHE----AMFLLNSQIP 69
+ L+ +P V P +EF ++ GR L ++ A+F LNS+IP
Sbjct: 108 VTNKMTRHLATLRESCYSP-VYPRLVEFLHFDIQSTGRITLRNIRRDHRNALFKLNSRIP 166
Query: 68 LVTMSSQL 45
LV SS+L
Sbjct: 167 LVRTSSEL 174
>gi|2995384|emb|CAA06156| (AJ004810) cytochrome P450 monooxygenase [Zea mays]
Length = 270
Score = 46.1 bits (107), Expect = 3e-04
Identities = 30/55 (54%), Positives = 34/55 (61%)
Query: 355 LESSSTGSSFPAGRPGPFPWKWVR*STCRDSGNLVIPFMRVTI*MTRRLATLRES 191
LESSSTGSSFPA P P V + +DSG + + VT MTR LATLRES
Sbjct: 70 LESSSTGSSFPADSAKPVPLAVVSLDSRQDSG-ISLSIHAVTNKMTRHLATLRES 123
Score = 30.9 bits (68), Expect = 9.6
Identities = 55/147 (37%), Positives = 69/147 (46%), Gaps = 43/147 (29%)
Query: 488 RPSQTPHLAFVLEQV--CRDDHGA--------------------VVFHFXCALHLPTSP- 378
RPSQTPHL ++ R GA VVFH PT P
Sbjct: 3 RPSQTPHLTMSSARIGPARPGLGAKRRGGAPLPTHGISKITLKVVVFHLRP--EAPTYPT 60
Query: 377 ----------QSSQLGHSRVKLNRVFFPRWPSRPVPLEMGSLVYM*GQWESRH------S 246
+SS G S FP ++PVPL + SL +SR S
Sbjct: 61 PLKSFHKVGLESSSTGSS--------FPADSAKPVPLAVVSL-------DSRQDSGISLS 105
Query: 245 IHARHHLNDEAFGYLKRVIVTPAVNPCFLEFP----PCHDRAPGRTHLISLHEAMFLLNS 78
IHA + L+ + V P +EF R R H A+F LNS
Sbjct: 106 IHAVTNKMTRHLATLRESCYS-RVYPRLVEFLHFDIQSTKRITLRQHPRDRRNALFKLNS 164
Query: 77 QIPLVTMSSQ 48
+IPLV SS+
Sbjct: 165 RIPLVRTSSE 174
>gi|3560521 (AF033212) major surface glycoprotein [Pneumocystis carinii f. sp.
hominis]
Length = 1008
Score = 32.5 bits (72), Expect = 3.3
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 381 RCRKVESAXEVKDHCAMIITTHLFKDKGQMGSLAGA--------VRPHNQNVVDRSTHSE 536
RC K+ES VK+ C + +G G + G V+PH +T +
Sbjct: 882 RCNKLESDCRVKEDCKDL--------EGVCGKIQGVCSKLKPLKVKPHETVTESTTTTTT 933
Query: 537 TRTLV*SIRTKECLSVSTT 593
T T V + EC S+ TT
Sbjct: 934 TTTTVTDPKATECKSLQTT 952
>gi|3560517 (AF033210) major surface glycoprotein [Pneumocystis carinii f. sp.
hominis]
Length = 1017
Score = 31.7 bits (70), Expect = 5.6
Identities = 24/86 (27%), Positives = 34/86 (38%)
Query: 381 RCRKVESAXEVKDHCAMIITTHLFKDKGQMGSLAGAVRPHNQNVVDRSTHSETRTLV*SI 560
RC K+ES +K+ C + +K V+PH +T + T T V
Sbjct: 874 RCNKLESDCRIKEDCKDLEEVCKKINKACRNLKPLEVKPHETVTESTTTTTTTTTTVADP 933
Query: 561 RTKECLSVSTTACMRGNLVPSDPTHT 638
+ EC S+ TT V THT
Sbjct: 934 KATECKSLQTT----DTWVTQTSTHT 955
Score = 31.3 bits (69), Expect = 7.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 83 LVKT*LHEERLSEFCPVLGRDTEEIPE 163
L KT HE++L E CPVL R++ E+ +
Sbjct: 157 LNKTETHEKKLKEICPVLQRESNELTD 183
>gi|3560519 (AF033211) major surface glycoprotein [Pneumocystis carinii f. sp.
hominis]
Length = 1022
Score = 31.7 bits (70), Expect = 5.6
Identities = 24/86 (27%), Positives = 34/86 (38%)
Query: 381 RCRKVESAXEVKDHCAMIITTHLFKDKGQMGSLAGAVRPHNQNVVDRSTHSETRTLV*SI 560
RC K+ES +K+ C + +K V+PH +T + T T V
Sbjct: 877 RCNKLESDCRIKEDCKDLEEVCKKINKACRNLKPLEVKPHETVTESTTTTTTTTTTVADP 936
Query: 561 RTKECLSVSTTACMRGNLVPSDPTHT 638
+ EC S+ TT V THT
Sbjct: 937 KATECKSLQTT----DTWVTQTSTHT 958
>gi|3560515 (AF033209) major surface glycoprotein [Pneumocystis carinii f. sp.
hominis]
Length = 1026
Score = 31.3 bits (69), Expect = 7.3
Identities = 24/86 (27%), Positives = 34/86 (38%)
Query: 381 RCRKVESAXEVKDHCAMIITTHLFKDKGQMGSLAGAVRPHNQNVVDRSTHSETRTLV*SI 560
RC K+ES +K+ C + +K V+PH +T + T T V
Sbjct: 883 RCNKLESDCRIKEDCKDLEEVCKKINKACRNLKPLEVKPHETVTEGTTTTTTTTTTVADP 942
Query: 561 RTKECLSVSTTACMRGNLVPSDPTHT 638
+ EC S+ TT V THT
Sbjct: 943 KATECKSLQTT----DTWVTQTSTHT 964
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161157686
Number of Sequences: 369800
Number of extensions: 3426577
Number of successful extensions: 8094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8080
Number of HSP's gapped (non-prelim): 14
length of query: 238
length of database: 113,023,754
effective HSP length: 53
effective length of query: 185
effective length of database: 93424354
effective search space: 17283505490
effective search space used: 17283505490
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)