BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII-54F
(705 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3136056|emb|CAA19115| (AL023592) RanBP7/importin-beta/Cse1p s... 63 2e-09
gi|2688609 (AE001168) B. burgdorferi predicted coding region BB0... 34 1.1
gi|3093352|emb|CAA75488| (Y15189) NADH dehydrogenase subunit 4 [... 34 1.4
gi|3877937|emb|CAA88602| (Z48716) similarity to a transmembranou... 33 2.4
gi|2429549 (AF025472) No definition line found [Caenorhabditis e... 32 3.2
gi|453515 (L28677) ORF1 [Tetrahymena pyriformis] 32 3.2
gi|133636|sp|P14240|RRPO_LYCVA RNA POLYMERASE >gi|67126|pir||RRX... 32 4.2
gi|4582459|gb|AAD24843|AC007071_15 (AC007071) putative RanBP7/im... 32 4.2
gi|4493896|emb|CAB39005| (AL034558) predicted using hexExon; MAL... 31 7.2
gi|2688097 (AE001130) B. burgdorferi predicted coding region BB0... 31 7.2
>gi|3136056|emb|CAA19115| (AL023592) RanBP7/importin-beta/Cse1p superfamily protein
[Schizosaccharomyces pombe]
Length = 1029
Score = 62.8 bits (150), Expect = 2e-09
Identities = 51/209 (24%), Positives = 105/209 (49%), Gaps = 14/209 (6%)
Query: 67 NTANGLFSDILEKISND----DFNRIFDFLLSILQEYDNIKTLE-SAKKAYASLFLITNM 231
N+A+ S L K+++ F I F IL +Y E + ++ +L ++ +
Sbjct: 388 NSADVAASRFLVKLASKRKKYTFMGILSFASDILNQYAASPPNEKNPRQKEGALRMVAAV 447
Query: 232 ARQIISLRKD---MLSGFLV-FVINNINSPYQFITSQCCYTLQFFDSKHVSPELNV-NAF 396
+ I+S M+ FLV V+ SP ++ S+ C + F S + + NA+
Sbjct: 448 SNSILSKNSPVAGMMQDFLVAHVMPEFTSPVGYLRSRACEMINRFSEIDWSDKSQLLNAY 507
Query: 397 NTIMALINSGNEIFKVDAALTILFFLDCQQVRLIMDSQIPVIIQTLIYCGNKYDLESCND 576
++ + + ++ AAL + + +V +M + +P+I+Q L++ N+ D+++ +
Sbjct: 508 QAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTAHVPIIMQNLLFLANEVDIDALSS 567
Query: 577 GLETIMDSFPEKI----SQYAPELTATLSKMILENLNEEENYD 693
+E + SF ++ SQ A +L T K++ E ++E D
Sbjct: 568 CMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQETMDESTTVD 610
>gi|2688609 (AE001168) B. burgdorferi predicted coding region BB0675 [Borrelia
burgdorferi]
Length = 287
Score = 34.0 bits (76), Expect = 1.1
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 22 NYIKMKYSYFCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQ--EYDNIKTLESAK 195
NY+K IKN D+++ + + I F+LS ++ +++ +K L S +
Sbjct: 34 NYLKENKKTIATFIKNDFESEIKDLIQYVKDKTDIMITPFVLSGIEAIDFNIVKPLFSKE 93
Query: 196 KAYASLFLITNMARQIISLRKDML-------SGFLVFVINNINSPYQFITSQCCYTLQFF 354
L LI N + SLRK+ +G++ F IN + ++ S Y +Q
Sbjct: 94 LTKNDLNLIFNFVKVNSSLRKEFFYNFNTISNGYITFYINKL---FEGKNSYTIYLIQKE 150
Query: 355 DSKHVSPELNVNAFNTIMAL 414
+ S ++ N ++ L
Sbjct: 151 NKALYSSDIIKNYIKILLLL 170
>gi|3093352|emb|CAA75488| (Y15189) NADH dehydrogenase subunit 4 [Myxine glutinosa]
Length = 458
Score = 33.6 bits (75), Expect = 1.4
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 296 LLITKTKNPESISFLKEIICLAIFVIRNKEAYAFLADSNVFMLSYS*SMLNKKSNILLKS 117
+++T P SI+F+ EI ++ + + + FLA + V +YS SM L K
Sbjct: 362 IILTNLAMPPSINFISEITIMSSLFLWSPLTFPFLALTMVITTTYSMSMFMLAQGKLSKM 421
Query: 116 SFDIFSKISENKPLAVFLML 57
+ I S S + L +FL L
Sbjct: 422 T-KILSPFSTREHLTLFLHL 440
>gi|3877937|emb|CAA88602| (Z48716) similarity to a transmembranous region of
ubiquinol-cytochrome-C reductase (PIR accession number
S38960); cDNA EST EMBL:T00461 comes from this gene; cDNA
EST EMBL:D27071 comes from this gene; cDNA EST
EMBL:D27070 comes... >gi|3881715|emb|CAA88990| (Z49132)
similarity to a transmembranous region of
ubiquinol-cytochrome-C reductase (PIR accession number
S38960); cDNA EST EMBL:T00461 comes from this gene; cDNA
EST EMBL:D27071 comes from this gene; cDNA EST
EMBL:D27070 comes...
Length = 1192
Score = 32.8 bits (73), Expect = 2.4
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 13 YPENYIKMKYSYFCINI--KNTANGLFSDILEKISNDDFNR-IFDFLLSILQEY 165
Y + + +K+ YF ++ KN+ N D+ EK+S +D +R IF F IL +
Sbjct: 1138 YVDETLFLKFMYFLMDFFFKNSNNNTHKDLYEKLSLNDIDRYIFSFFSQILYSF 1191
>gi|2429549 (AF025472) No definition line found [Caenorhabditis elegans]
Length = 832
Score = 32.5 bits (72), Expect = 3.2
Identities = 28/109 (25%), Positives = 47/109 (42%)
Query: 31 KMKYSYFCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNIKTLESAKKAYAS 210
K KY+ + KN + + D+L ++N F D + I ++DN +TLE A + Y
Sbjct: 265 KTKYNKRLVGDKNYIDVVCEDLLHILTNAKFGE--DIEIRIWYDHDNQETLELANRLYEQ 322
Query: 211 LFLITNMARQIISLRKDMLSGFLVFVINNINSPYQFITSQCCYTLQFFD 357
+ + + I +R L I N+ SQ C L +F+
Sbjct: 323 FKIHSQTTKNPIYVRS------LHLQIENL--------SQLCSVLTYFN 357
>gi|453515 (L28677) ORF1 [Tetrahymena pyriformis]
Length = 443
Score = 32.5 bits (72), Expect = 3.2
Identities = 23/72 (31%), Positives = 38/72 (51%)
Query: 22 NYIKMKYSYFCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNIKTLESAKKA 201
+Y MK+ + IN K+ N F ++LE +N + + F+ L+ E+ N E+ KK
Sbjct: 210 DYNIMKFKHNLINYKSYFN--FKNMLEFSNNYFYLKNFNKHLNFNMEFKN-NFFENLKKT 266
Query: 202 YASLFLITNMAR 237
Y+ F TNM +
Sbjct: 267 YSMSFSATNMVK 278
>gi|133636|sp|P14240|RRPO_LYCVA RNA POLYMERASE >gi|67126|pir||RRXPLC RNA-directed RNA polymerase
(EC 2.7.7.48) - lymphocytic choriomeningitis virus
(strain Armstrong 53b) >gi|331369 (J04331) L protein
[Lymphocytic choriomeningitis virus]
Length = 2210
Score = 32.1 bits (71), Expect = 4.2
Identities = 14/43 (32%), Positives = 26/43 (59%)
Query: 337 YTLQFFDSKHVSPELNVNAFNTIMALINSGNEIFKVDAALTIL 465
+T + D +H +P +N+ AF+ +++ N+G IFK + L L
Sbjct: 751 FTSKEIDCQHTTPGVNLEAFSLMVSSFNNGTLIFKGEKKLNSL 793
>gi|4582459|gb|AAD24843|AC007071_15 (AC007071) putative RanBP7/importin protein [Arabidopsis thaliana]
Length = 1037
Score = 32.1 bits (71), Expect = 4.2
Identities = 38/230 (16%), Positives = 96/230 (41%), Gaps = 8/230 (3%)
Query: 4 FENYPENYIKMKYSYF--CINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNIK 177
+E P Y++ Y+ + + + ++++ K ++ + F++ I Y+
Sbjct: 378 WEEDPHEYVRKGYNIIEDLYSPRTASMDFVNELVRKRGKENLPKFVKFVVEIFLSYEKAT 437
Query: 178 TLESAKK----AYASLFLITNMARQIISLRKDMLSGFLVFVINNINSPYQFITSQCCYTL 345
E + A ++ + + +Q + + + + + NSP + ++ +
Sbjct: 438 VEEKPYRQKDGAMLAVGALCDKLKQTDPYKSQLELMLVQHIFPDFNSPVGHLRAKAAWVA 497
Query: 346 QFFDSKHVSPELNVN-AFNTIMALINSGNEIFKVDAALTILFFLD-CQQVRLIMDSQIPV 519
+ + S + N A +++++ + + +VD+ + F++ C++ +M
Sbjct: 498 GQYAHINFSDQNNFRKALHSVVSGLRDPDLPVRVDSVFALRSFVEACKEFFKLM------ 551
Query: 520 IIQTLIYCGNKYDLESCNDGLETIMDSFPEKISQYAPELTATLSKMILENLNEEENYD 693
N+ + E LETI+D F E+++ +A L L+ LN E D
Sbjct: 552 ---------NEVENEDLVFTLETIVDKFGEEMAPFAFGLCQNLAAAFWRCLNTSEAND 600
>gi|4493896|emb|CAB39005| (AL034558) predicted using hexExon; MAL3P2.18 (PFC0245c),
Hypothetical protein, len: 3934 aa [Plasmodium
falciparum]
Length = 3933
Score = 31.3 bits (69), Expect = 7.2
Identities = 42/201 (20%), Positives = 93/201 (45%), Gaps = 24/201 (11%)
Query: 4 FENYPENYIKMKYSYFCIN------IKNTANGLFSDILEKISNDDF--------NRIFDF 141
F N ++ + C+N + + A ++S I +K+ D F + IF+F
Sbjct: 53 FVNVSSKFLLFRRLSQCLNPLLPSGVHSKALIIYSSIFKKVEMDFFINNIHILCSGIFEF 112
Query: 142 LLSILQE-----YDNIKTLESAKK-----AYASLFLITNMARQIISLRKDMLSGFLVFVI 291
+L + NIK++ K+ AYA L + N ++ ++L ++ I
Sbjct: 113 MLHCTINLKTIYFKNIKSILRLKENVYIFAYALLLSLFN----VVDSDNNIL--LYIYSI 166
Query: 292 NNINSPYQFITSQCCYTLQFFDSKHVSPELNVNAFNTIMALINSGNEIFKVDAALTILFF 471
NN F + L+ PE+ N N + A + ++
Sbjct: 167 NNYIGENIFFNNIWLLLLRH-------PEIRTNILNFLEASFSPQ------------IYL 207
Query: 472 LDCQQVRLIMDSQIPVIIQTLIYCGNKYDLESCNDGLETIMDSFP 606
L +++++++ + +++ ++IYC N ++ + L ++++FP
Sbjct: 208 LSKERIKMLLPYKDHLVLSSIIYCLNDKNILNQRITLSLLINNFP 252
>gi|2688097 (AE001130) B. burgdorferi predicted coding region BB0199 [Borrelia
burgdorferi]
Length = 754
Score = 31.3 bits (69), Expect = 7.2
Identities = 30/118 (25%), Positives = 57/118 (47%), Gaps = 5/118 (4%)
Query: 10 NYPENYIKMKYSY-----FCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNI 174
++PE K+K Y I I + L EKI + + D L++I ++
Sbjct: 555 SFPEKINKIKIEYPKDKKHPIQIISNDFNLTLQANEKILKTNIE-VDDELMNI-----DL 608
Query: 175 KTLESAKKAYASLFLITNMARQIISLRKDMLSGFLVFVINNINSPYQFITSQCCYTLQFF 354
K ++ A++A S+ L+T I L S +++ N+PY+ + ++ +TL+
Sbjct: 609 KKIDIAERAVYSIDLVTQKIANQIELHFKNASKLIIY---QSNTPYKILANKIIFTLKNI 665
Query: 355 DSK 363
+SK
Sbjct: 666 NSK 668
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128273845
Number of Sequences: 369800
Number of extensions: 2475490
Number of successful extensions: 6083
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6078
Number of HSP's gapped (non-prelim): 13
length of query: 235
length of database: 113023754
effective HSP length: 53
effective length of query: 181
effective length of database: 93424354
effective search space: 16909808074
effective search space used: 16909808074
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)