BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII-52F
(492 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|129177|sp|P21957|OPI1_YEAST NEGATIVE REGULATOR OF PHOSPHOLIPI... 37 0.10
gi|4493991|emb|CAB39050| (AL034559) predicted using hexExon; MAL... 36 0.13
gi|2128914|pir||F64489 hypothetical protein MJ1519 - Methanococc... 35 0.30
gi|3649755|emb|CAB11104| (Z98547) predicted using hexExon; MAL3P... 34 0.66
gi|2129010|pir||F64508 hypothetical protein MJ1672 - Methanococc... 34 0.87
gi|4538948|emb|CAB39684| (AL049483) putative protein [Arabidopsi... 34 0.87
gi|731766|sp|P38883|YHZ7_YEAST HYPOTHETICAL 86.7 KD PROTEIN IN E... 32 2.0
gi|3875990|emb|CAB02958| (Z81063) similar to Actinin-type actin-... 32 2.6
gi|132383|sp|P13830|RESA_PLAFF RING-INFECTED ERYTHROCYTE SURFACE... 32 2.6
gi|3875983|emb|CAB02951| (Z81063) similar to Actinin-type actin-... 32 2.6
gi|3892157|emb|CAA10033| (AJ012469) DYS-1 protein [Caenorhabditi... 32 2.6
gi|132384|sp|P13831|RESA_PLAFN RING-INFECTED ERYTHROCYTE SURFACE... 32 2.6
gi|3170563 (AF057157) BRCA1-associated RING domain protein; BARD... 32 3.4
gi|4416301|gb|AAD20306| (AF105716) gag protein [Zea mays] 32 3.4
gi|1934970|emb|CAA70130| (Y08926) AARP1 protein [Plasmodium falc... 31 4.4
gi|3647344|emb|CAB10568| (Z97348) predicted using hexExon; MAL3P... 31 5.8
gi|2497072|sp|Q04500|YMJ3_YEAST HYPOTHETICAL 103.0 KD PROTEIN IN... 31 5.8
gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococc... 31 5.8
gi|861376 (U28992) coded for by C. elegans cDNA yk30f6.5; coded ... 31 5.8
gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL... 31 5.8
gi|115562|sp|P21554|CB1R_HUMAN CANNABINOID RECEPTOR 1 (CB1) (CB-... 31 7.5
gi|3319387 (AF077536) No definition line found [Caenorhabditis e... 30 9.9
gi|1709915|sp|P38009|PU92_YEAST PHOSPHORIBOSYLAMINOIMIDAZOLECARB... 30 9.9
gi|3880494|emb|CAB01522| (Z78066) cDNA EST EMBL:D28005 comes fro... 30 9.9
gi|3875321|emb|CAB00024| (Z75710) Weak similarity with yeast reg... 30 9.9
gi|3417422|emb|CAA20310| (AL031261) hypothetical protein [Schizo... 30 9.9
>gi|129177|sp|P21957|OPI1_YEAST NEGATIVE REGULATOR OF PHOSPHOLIPID BIOSYNTHESIS
>gi|83358|pir||S13741 regulatory protein OPI1 - yeast
(Saccharomyces cerevisiae) >gi|172068 (M57383) negative
phospholipid biosynthesis regulator [Saccharomyces
cerevisiae] >gi|2289890 (U11582) No definition line
found [Saccharomyces cerevisiae]
Length = 404
Score = 36.7 bits (83), Expect = 0.10
Identities = 19/58 (32%), Positives = 31/58 (52%), Gaps = 4/58 (6%)
Query: 481 YDDXXFNASKTFKNTRQSETRDLSSNKDNKRQCKTNKNFED----ITCEQKLNPINEWFD 314
+DD +N + F N RQ +R ++ KDN ++ K N + E +TC L N+
Sbjct: 95 HDDYDYNDDEFFTNKRQKLSRAIAKGKDNLKEYKLNMSIESKKRLVTCLHLLKLANKQLS 154
Query: 313 EK 308
+K
Sbjct: 155 DK 156
>gi|4493991|emb|CAB39050| (AL034559) predicted using hexExon; MAL3P7.43 (PFC1060c),
Hypothetical protein, len: 694 aa [Plasmodium
falciparum]
Length = 693
Score = 36.4 bits (82), Expect = 0.13
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 427 ETRDLSSNKDNKRQCKTNKNFEDITCEQK--LNPINEWFDEKDQLNDYIITFLLKNNPID 254
E + S NK NK++ K N N D E + ++ + +D D I+T LK+ I
Sbjct: 119 ENEEQSYNKKNKKKKKKNSNDNDNDNENENFVSKVKVEHKNEDITEDMILT--LKDQNIL 176
Query: 253 NKGQEISLL--EVTNSKAQNICCEKNVT------YVPVDFYSDPE-------ILNAEIKI 119
N QE L+ E+ +++ +K+ Y P+ +Y D N+ +++
Sbjct: 177 NSDQEDCLINEELKKKNMKSLLSKKDDNYWTKNYYDPLSYYDDNNNNNNNNLADNSSMQM 236
Query: 118 LSPKIKEGETARDINVPKRIDDTHTK-KYDSD 26
L PK K+ + + D+NV + T TK K++ D
Sbjct: 237 L-PKYKDEKHSFDVNV--TYEKTQTKYKHEKD 265
>gi|2128914|pir||F64489 hypothetical protein MJ1519 - Methanococcus jannaschii >gi|1500409
(U67593) exodeoxyribonuclease V (recD) [Methanococcus
jannaschii]
Length = 1175
Score = 35.2 bits (79), Expect = 0.30
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 400 DNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYIITFLLKNNPIDNKGQEISLLEV 221
D+K+ + +K F DI E+++ +NE F K+ L D I + +K N I +EI +EV
Sbjct: 745 DSKKIVELSKLFLDIDKEERIKILNEMFKNKETLGDNEI-YRIKEN-IGGIEKEIITIEV 802
Query: 220 TN----SKAQNICCEKNVTYVPVDFYSDPEILNAEIKILSPKIKEGE 92
K+ E + + + D + N +++IL P +GE
Sbjct: 803 VKDGNIKKSLENAIETILKENNTEDFFDFAVFNDKLQILVPTKTKGE 849
>gi|3649755|emb|CAB11104| (Z98547) predicted using hexExon; MAL3P3.3 (PFC0335c), Hypothetical
protein, len: 3725 aa [Plasmodium falciparum]
Length = 3724
Score = 34.0 bits (76), Expect = 0.66
Identities = 35/145 (24%), Positives = 61/145 (41%), Gaps = 6/145 (4%)
Query: 445 KNTRQSETRDLSSNKD--NKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYIITFLL 272
K + D+ D K + N E+ + + N +NE+ + N I +
Sbjct: 1119 KKNDMEKKNDMEKKNDMEKKNDMENENNMENKSDIENENKMNEYKNNMKNENKMIENNTI 1178
Query: 271 KNNPIDNKGQEISLLE---VTNSKAQNICCEKNVTYVPVDFYSDPEILNAEIKILSPKIK 101
+NN I+N E +++E + N+ +N E N+ + + N + KI
Sbjct: 1179 ENNMIENNMIENNMIENNMIENNMIENNMIENNMIENNMIENNTKIAYNMNENKNNIKI- 1237
Query: 100 EGETARDINVPKRIDD-THTKKYDSDLINMI 11
E + INV I + H K +DLIN +
Sbjct: 1238 EDDAKNQINVQNNIQNKVHVKDKKNDLINNV 1268
>gi|2129010|pir||F64508 hypothetical protein MJ1672 - Methanococcus jannaschii >gi|1500575
(U67607) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 800
Score = 33.6 bits (75), Expect = 0.87
Identities = 32/102 (31%), Positives = 46/102 (44%), Gaps = 9/102 (8%)
Query: 403 KDNKRQCKTNKNF-EDITCEQKLNPINEWFDEKDQL--------NDYIITFLLKNNPIDN 251
K+NK++ K K + +D T E+ N N W E L D++ T K
Sbjct: 234 KENKKKNKYAKEYIDDKTLEKLFNNDNGWNKEIFSLIHGDLSGIQDFVFTITTKYATKSL 293
Query: 250 KGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEILNAEIKILSPKIKE 98
KG+ L +T A+ IC E N+ + FY ILS K+ E
Sbjct: 294 KGRSFYLDFLTEYFAKYICKELNLPITNILFYG-----GGHFYILSYKVDE 339
>gi|4538948|emb|CAB39684| (AL049483) putative protein [Arabidopsis thaliana]
Length = 1067
Score = 33.6 bits (75), Expect = 0.87
Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 5/84 (5%)
Query: 427 ETRDLSSNKDNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYIITFLLKNNPIDN- 251
+ R SS K +KR+ K K ED++CE+KL E +DQ++ NNP+ N
Sbjct: 127 DNRKGSSTKKSKRREKKKKK-EDLSCEEKLLDEVEKITSEDQVHP-------PNNPLSNG 178
Query: 250 ----KGQEISLLEVTNSKAQNICCEKNVT 176
+ E++ A IC + N++
Sbjct: 179 MVQERSGELTQDSCEKPGAAQICTDPNLS 207
>gi|731766|sp|P38883|YHZ7_YEAST HYPOTHETICAL 86.7 KD PROTEIN IN EGD2-SUN1 INTERGENIC REGION
>gi|626699|pir||S46678 hypothetical protein YHR197w -
yeast (Saccharomyces cerevisiae) >gi|458930 (U00030)
Yhr197wp [Saccharomyces cerevisiae]
Length = 763
Score = 32.5 bits (72), Expect = 2.0
Identities = 32/97 (32%), Positives = 48/97 (48%), Gaps = 4/97 (4%)
Query: 448 FKNTRQSETRDLSSNKDNKRQCKTNKNFEDITCEQKL----NPINEWFDEKDQLNDYIIT 281
FKN R+S + + K +KR F DI +L N +N WF+E +ND+ IT
Sbjct: 478 FKN-RKSIMKQQTKTKQSKRSKSAEGAFSDIYTHPELFVCKNSMN-WFNE---INDFFIT 532
Query: 280 FLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVDF 158
L NN I I +L+ S Q++ ++ Y+P F
Sbjct: 533 AL--NNWILPSTPHIQILKY--SITQSLRLKERFGYIPESF 569
>gi|3875990|emb|CAB02958| (Z81063) similar to Actinin-type actin-binding domain, Spectrin
repeat (4 domains) [Caenorhabditis elegans]
Length = 2261
Score = 32.1 bits (71), Expect = 2.6
Identities = 24/91 (26%), Positives = 42/91 (45%), Gaps = 6/91 (6%)
Query: 316 DEKDQLNDYIITFLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEIL 137
DE +++ + I P + E+S E+ ++ E+ V VPVD Y + +
Sbjct: 1892 DETEKVIETIPAARPSAGPSEGTVAEVSTSEILKARPAQESIERTVREVPVDEYEETANI 1951
Query: 136 NAEIKILSPKI------KEGETARDINVPKRIDDTHT 44
++ ++ KI E E A V I+D+HT
Sbjct: 1952 SSGDELQDHKISSAVPDSESEIASMFEVLDSIEDSHT 1988
>gi|132383|sp|P13830|RESA_PLAFF RING-INFECTED ERYTHROCYTE SURFACE ANTIGEN PRECURSOR
>gi|84244|pir||A25526 ring-infected erythrocyte surface
antigen precursor - Plasmodium falciparum (strain
FC27/Papua New Guinea)
Length = 1073
Score = 32.1 bits (71), Expect = 2.6
Identities = 29/122 (23%), Positives = 60/122 (48%), Gaps = 4/122 (3%)
Query: 448 FKNTRQSETRDLSSNKDNKRQCKTNKNFEDITC--EQKLNPINEWFDEKDQLNDYIITFL 275
FK+ ++ + SS K Q +T N +++ ++ + E+ +Q+N F
Sbjct: 705 FKHVAKTHLKK-SSKSAKKLQQRTQANKQELANINNNLMSTLKEYLGSSEQMNSITYNFE 763
Query: 274 LKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTY-VPVDFYS-DPEILNAEIKILSPKIK 101
N+ +DN Q ++ +++ + + I EK V+Y V + Y + LNA ++LS
Sbjct: 764 NINSNVDNGNQSKNISDLSYTDQKEI-LEKIVSYIVDISLYDIENTALNAAEQLLSDNSV 822
Query: 100 EGETAR 83
+ +T +
Sbjct: 823 DEKTLK 828
>gi|3875983|emb|CAB02951| (Z81063) similar to Actinin-type actin-binding domain containing
proteins [Caenorhabditis elegans]
Length = 2241
Score = 32.1 bits (71), Expect = 2.6
Identities = 24/91 (26%), Positives = 42/91 (45%), Gaps = 6/91 (6%)
Query: 316 DEKDQLNDYIITFLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEIL 137
DE +++ + I P + E+S E+ ++ E+ V VPVD Y + +
Sbjct: 1872 DETEKVIETIPAARPSAGPSEGTVAEVSTSEILKARPAQESIERTVREVPVDEYEETANI 1931
Query: 136 NAEIKILSPKI------KEGETARDINVPKRIDDTHT 44
++ ++ KI E E A V I+D+HT
Sbjct: 1932 SSGDELQDHKISSAVPDSESEIASMFEVLDSIEDSHT 1968
>gi|3892157|emb|CAA10033| (AJ012469) DYS-1 protein [Caenorhabditis elegans]
Length = 3674
Score = 32.1 bits (71), Expect = 2.6
Identities = 24/91 (26%), Positives = 42/91 (45%), Gaps = 6/91 (6%)
Query: 316 DEKDQLNDYIITFLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEIL 137
DE +++ + I P + E+S E+ ++ E+ V VPVD Y + +
Sbjct: 1903 DETEKVIETIPAARPSAGPSEGTVAEVSTSEILKARPAQESIERTVREVPVDEYEETANI 1962
Query: 136 NAEIKILSPKI------KEGETARDINVPKRIDDTHT 44
++ ++ KI E E A V I+D+HT
Sbjct: 1963 SSGDELQDHKISSAVPDSESEIASMFEVLDSIEDSHT 1999
>gi|132384|sp|P13831|RESA_PLAFN RING-INFECTED ERYTHROCYTE SURFACE ANTIGEN >gi|1335719|emb|CAA28816|
(X05181) RESA NF7 Ag13 [Plasmodium falciparum]
Length = 760
Score = 32.1 bits (71), Expect = 2.6
Identities = 29/122 (23%), Positives = 60/122 (48%), Gaps = 4/122 (3%)
Query: 448 FKNTRQSETRDLSSNKDNKRQCKTNKNFEDITC--EQKLNPINEWFDEKDQLNDYIITFL 275
FK+ ++ + SS K Q +T N +++ ++ + E+ +Q+N F
Sbjct: 491 FKHVAKTHLKK-SSKSAKKLQQRTQANKQELANINNNLMSTLKEYLGSSEQMNSITYNFE 549
Query: 274 LKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTY-VPVDFYS-DPEILNAEIKILSPKIK 101
N+ +DN Q ++ +++ + + I EK V+Y V + Y + LNA ++LS
Sbjct: 550 NINSNVDNGNQSKNISDLSYTDQKEI-LEKIVSYIVDISLYDIENTALNAAEQLLSDNSV 608
Query: 100 EGETAR 83
+ +T +
Sbjct: 609 DEKTLK 614
>gi|3170563 (AF057157) BRCA1-associated RING domain protein; BARD1 [Mus
musculus]
Length = 765
Score = 31.7 bits (70), Expect = 3.4
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 415 LSSNKDNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYIITFL-LKNNP---IDNK 248
L NKD+K F D E+K N I WF + + Y++T + ++ P D+K
Sbjct: 109 LHDNKDSKDNTSRASLFGD--AERKKNSIKMWFSPRSKKVRYVVTKVSVQTQPQKAKDDK 166
Query: 247 GQEISLLEVTNS 212
QE S+ E ++
Sbjct: 167 AQEASMYEFVSA 178
>gi|4416301|gb|AAD20306| (AF105716) gag protein [Zea mays]
Length = 892
Score = 31.7 bits (70), Expect = 3.4
Identities = 28/99 (28%), Positives = 41/99 (41%)
Query: 457 SKTFKNTRQSETRDLSSNKDNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYIITF 278
SK+ S D + +DN R N N E ++KLN + EKD L D F
Sbjct: 492 SKSSTKYETSSDEDDKNEEDNLRILFANLNMEQ---KEKLNELISAIHEKDDLLDSQEDF 548
Query: 277 LLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVD 161
L+K N K + LE K + + E + + +D
Sbjct: 549 LIKENKKHVKVKNAYALE--REKCEKLSSELSTCHEILD 585
>gi|1934970|emb|CAA70130| (Y08926) AARP1 protein [Plasmodium falciparum]
Length = 3844
Score = 31.3 bits (69), Expect = 4.4
Identities = 32/120 (26%), Positives = 44/120 (36%)
Query: 478 DDXXFNASKTFKNTRQSETRDLSSNKDNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQL 299
DD + + + D +N D+ + N +D + + N+ DE L
Sbjct: 1244 DDDNNDDDNNDDDNNDDDNNDDDNNDDDNND--DDNNDDDNNDDDNNDDDNDDNDEDSNL 1301
Query: 298 NDYIITFLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEILNAEIKI 119
+ L N DN VTNS N N TY+ VD D E L AEI I
Sbjct: 1302 HGSSSNMLNIINSRDNNS-------VTNSSNINTARNNNSTYIIVDQNGDNETLFAEILI 1354
>gi|3647344|emb|CAB10568| (Z97348) predicted using hexExon; MAL3P1.1 (PFC0195w),
Serine/threonine protein kinase, len: 1339 aa; Three
regions of significant similarity with serine kinases.
Human serine kinase (TR:Q12890) BLAST score: 967 Sum
P(3) = 1....
Length = 1338
Score = 30.9 bits (68), Expect = 5.8
Identities = 30/115 (26%), Positives = 49/115 (42%)
Query: 412 SSNKDNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYIITFLLKNNPIDNKGQEIS 233
+ NKDN QC+ N C K N I + + +ND N ++ K S
Sbjct: 404 NKNKDNHNQCEDN---SINICNNKNNNI-----QTNNIND---------NTVNEKINNTS 446
Query: 232 LLEVTNSKAQNICCEKNVTYVPVDFYSDPEILNAEIKILSPKIKEGETARDINVP 68
++ N+ N EKN D + +++N + IL K K+ + ++IN P
Sbjct: 447 KKDMLNNTQNNNDSEKN------DVVIEQQLVNED--ILKKKNKQTKKKKNINEP 493
>gi|2497072|sp|Q04500|YMJ3_YEAST HYPOTHETICAL 103.0 KD PROTEIN IN RAD10-PRS4 INTERGENIC REGION
>gi|1077293|pir||S49634 hypothetical protein YML093w -
yeast (Saccharomyces cerevisiae)
>gi|575710|emb|CAA86645| (Z46660) unknown orf, len: 899,
CAI: 0.24 [Saccharomyces cerevisiae]
Length = 899
Score = 30.9 bits (68), Expect = 5.8
Identities = 38/142 (26%), Positives = 64/142 (44%), Gaps = 21/142 (14%)
Query: 436 RQSETRDLSSNKDNKRQCKTNKNFEDI----TCEQKLNPIN---------------EWFD 314
+ E R+ +NK+ RQ + +N +DI + E++ N N E
Sbjct: 531 KNGEAREREANKETLRQLRAVENGDDIKLFESDEEETNGENIQINKGRRIYTPGSLESNK 590
Query: 313 EKDQLNDYIITFLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEILN 134
+ ++LND+ K N +D + L NS + V+ SD E L
Sbjct: 591 DMNELNDH----TRKENKVDESRSLENRLRAKNSGQSKNARTNAEGAIIVEEESDGEPLQ 646
Query: 133 AEIKILSPKIKEGETARDIN--VPKRIDDTHTKKYDSDLINMI 11
++ E A+D+N + D+ HT K S +N+I
Sbjct: 647 D-----GQNNQQDEEAKDVNPWLANESDEEHTVKKQSSKVNVI 684
>gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococcus jannaschii >gi|1591962
(U67572) purine NTPase [Methanococcus jannaschii]
Length = 1005
Score = 30.9 bits (68), Expect = 5.8
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 463 NASKTFKNTR-QSETRDLSSNKDNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYI 287
N K KN Q E ++ + N + K K FEDI +KL NEW ++K +I
Sbjct: 191 NYEKELKNKMSQLEEKNKKLMEINDKLNKIKKEFEDI---EKL--FNEWENKKLLYEKFI 245
Query: 286 ITFLLKNNPIDNKGQEISLLE 224
+ ++ K QE+ +LE
Sbjct: 246 NKLEERKRALELKNQELKILE 266
>gi|861376 (U28992) coded for by C. elegans cDNA yk30f6.5; coded for by C.
elegans cDNA yk34f10.5 [Caenorhabditis elegans]
Length = 949
Score = 30.9 bits (68), Expect = 5.8
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 490 CNYYDDXXFNASKTFKNTRQSETRDLSSN 404
CN++DD F +S T NT +S+T D +
Sbjct: 894 CNFFDDRSFASSSTRANTFESDTLDFDKD 922
>gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL3P7.21 (PFC0960c),
Hypothetical protein, len: 1929 aa [Plasmodium
falciparum]
Length = 1928
Score = 30.9 bits (68), Expect = 5.8
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 481 YDDXXFNASKTFKNTRQSETRDLSSNKDNKRQ--CKTNKNFE---DITCEQKLNPINEWF 317
Y+ N + + ++ ++ N++N + C+ + + + + E+K N NE
Sbjct: 489 YEKFTLNLNNQMDDNNNNKVNQINFNENNNKNDMCQEKEKRQLHYETSQEEKKNMSNEII 548
Query: 316 D------------EKDQLNDYIITFLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTY 173
+ +KD +N +I + NN I N QE+ + + NI C KN
Sbjct: 549 NNDNSTNQQVHGKKKDLINTHIYSSKNNNNHIHNSDQELIIFK------NNINCVKNNEV 602
Query: 172 VPVDFYSDPEILN 134
+ +D ++ I N
Sbjct: 603 IIMDDKNNCHINN 615
Score = 30.9 bits (68), Expect = 5.8
Identities = 42/162 (25%), Positives = 70/162 (42%), Gaps = 1/162 (0%)
Query: 487 NYYDDXXFNASKTFKNTRQSETRDLSSNKDNKRQCKTNK-NFEDITCEQKLNPINEWFDE 311
N ++ + + N ++ RD + NK+N R NK N+ D + N N +
Sbjct: 1009 NVLENFTIDKQPSDNNHNKNNYRDNNRNKNNYRDNNRNKNNYRD----KNHNSNNNKNNN 1064
Query: 310 KDQLNDYIITFLLKNNPIDNKGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEILNA 131
K++ N+Y + ++N N I++LE N KA N K V Y+
Sbjct: 1065 KNKNNNY---YYYQHN---NNLSHITVLEKKN-KALN----KQVKYL------------- 1100
Query: 130 EIKILSPKIKEGETARDINVPKRIDDTHTKKYDSDLINMIAEF 2
E KIL K KE ++ K+ + +Y+ L N+I +F
Sbjct: 1101 ENKILVQKKKEMSFCKNKEKYKKKKISLINEYEKKLDNIIIDF 1143
>gi|115562|sp|P21554|CB1R_HUMAN CANNABINOID RECEPTOR 1 (CB1) (CB-R) (CANN6) >gi|105535|pir||S17595
cannabinoid receptor CB1 - human >gi|29915|emb|CAA38699|
(X54937) cannabinoid receptor [Homo sapiens]
>gi|736237|emb|CAA57018| (X81120) central cannabinoid
receptor [Homo sapiens] >gi|1657841 (U73304) CB1
cannabinoid receptor [Homo sapiens]
>gi|4502927|ref|NP_001831.1|pCNR1| brain cannabinoid
receptor 1
Length = 472
Score = 30.5 bits (67), Expect = 7.5
Identities = 14/37 (37%), Positives = 20/37 (53%)
Query: 442 NTRQSETRDLSSNKDNKRQCKTNKNFEDITCEQKLNP 332
N + + LSS K+N+ + +NF DI C LNP
Sbjct: 77 NITEFYNKSLSSFKENEENIQCGENFMDIECFMVLNP 113
>gi|3319387 (AF077536) No definition line found [Caenorhabditis elegans]
Length = 626
Score = 30.1 bits (66), Expect = 9.9
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 8/73 (10%)
Query: 475 DXXFNASKTFKNTRQSETRDLSSNKDNKRQCKTNKNFEDITCEQKLNPINEWF------- 317
D N K F + + R +S ++ + +C E C++ N I WF
Sbjct: 274 DLIANLFKAFTLLAEGKDRAISEYEEGEDECFRRYRAEYTKCDEFPNEIGFWFNDYMVIH 333
Query: 316 -DEKDQLNDYIITFLLKNNPI 257
D K N + I+ + +NPI
Sbjct: 334 ADAKKTENKFNISAKMNSNPI 354
>gi|1709915|sp|P38009|PU92_YEAST PHOSPHORIBOSYLAMINOIMIDAZOLECARBOXAMIDE FORMYLTRANSFERASE 2 (AICAR
TRANSFORMYLASE) / IMP CYCLOHYDROLASE (INOSINICASE) (IMP
SYNTHETASE) (ATIC) >gi|1084913|pir||S54489 hypothetical
protein YMR120c - yeast (Saccharomyces cerevisiae)
>gi|809579|emb|CAA89269| (Z49273) unknown [Saccharomyces
cerevisiae]
Length = 592
Score = 30.1 bits (66), Expect = 9.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 148 PEILNAEIKILSPKIKEGETARDINV-PKRIDDTHTKKYDSDLINM 14
PE+L +K L P + G ARDI+ K + + H +K D + N+
Sbjct: 59 PEMLGGRVKTLHPAVHGGILARDIDSDEKDLKEQHIEKVDYVVCNL 104
>gi|3880494|emb|CAB01522| (Z78066) cDNA EST EMBL:D28005 comes from this gene; cDNA EST
EMBL:D28004 comes from this gene; cDNA EST CEMSF72FB
comes from this gene; cDNA EST EMBL:T02156 comes from
this gene; cDNA EST CEESR42FB comes from this gene; cDNA
ES...
Length = 2277
Score = 30.1 bits (66), Expect = 9.9
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 430 SETRDLSSNKDNKRQCKTNKNFEDITCEQKLNPINEWFDEKDQLNDYIITFLLKN----- 266
+E+ + S D ++ N+ ED+ E +PI +W DE D I LK+
Sbjct: 1108 TESSEESQKADGNQE---NQEEEDVVAELNFHPIRQWRDE-----DVISLQSLKSLVAEV 1159
Query: 265 ---NPID----NKGQEISLLEVTNSKAQNICCEKNVTYVPVDFYSDPEILNAEIKILSP 110
+D N+ E S L++ + + +DF +DP++++ I ++ P
Sbjct: 1160 GCITDVDASDVNEQDEESTLKILK------VVPSEPSLLELDFTNDPKVIHVPIPLMEP 1212
>gi|3875321|emb|CAB00024| (Z75710) Weak similarity with yeast regulatory protein NGR1 (Swiss
Prot accession number P32831) [Caenorhabditis elegans]
Length = 741
Score = 30.1 bits (66), Expect = 9.9
Identities = 12/61 (19%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 445 KNTRQSETRDLSSNKDNKRQCKTNKNFEDITCEQ-KLNPINEWFDEKDQLNDYIITFLLK 269
+N+ + ++++N R +N N+ ++ ++ K++ +NE + NDY + ++
Sbjct: 616 QNSSDPNSPNVNTNPSKNRNTTSNSNYIELPIDEGKIDEVNEALSYPEDSNDYFLKSMMA 675
Query: 268 NN 263
N
Sbjct: 676 KN 677
>gi|3417422|emb|CAA20310| (AL031261) hypothetical protein [Schizosaccharomyces pombe]
Length = 406
Score = 30.1 bits (66), Expect = 9.9
Identities = 25/78 (32%), Positives = 39/78 (49%), Gaps = 6/78 (7%)
Query: 478 DDXXFNASKTFKNTRQSETRDLS----SNKDNK--RQCKTNKNFEDITCEQKLNPINEWF 317
D+ N+SK+ N R S T + S +N DNK + KT N + E+ + I + F
Sbjct: 33 DELNSNSSKSLNNDRISRTIENSLQKETNSDNKIKKLSKTKSNPTNPKSEEDPSQICQSF 92
Query: 316 DEKDQLNDYIITFLLKNNPIDNKG 245
DE + + F L + N+G
Sbjct: 93 DESNIITPSKYLFPLSKDYSPNEG 116
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71411643
Number of Sequences: 368476
Number of extensions: 1170822
Number of successful extensions: 4928
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4918
Number of HSP's gapped (non-prelim): 31
length of query: 164
length of database: 112640273
effective HSP length: 52
effective length of query: 111
effective length of database: 93479521
effective search space: 10376226831
effective search space used: 10376226831
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)