BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-51F
         (504 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3122567|sp|Q37373|NUAM_ACACA NADH DEHYDROGENASE, SUBUNIT 11 (...    33  1.6
gi|1076195|pir||S49604 hypothetical protein 126 - euglenid (Asta...    32  3.5
gi|3647350|emb|CAB10574| (Z97348) predicted using hexExon; MAL3P...    31  7.8


>gi|3122567|sp|Q37373|NUAM_ACACA NADH DEHYDROGENASE, SUBUNIT 11 (NADH DEHYDROGENASE (UBIQUINONE))
           (UBIQUINONE REDUCTASE) (TYPE I DEHYDROGENASE) (COMPLEX I
           DEHYDROGENASE) >gi|1078740|pir||S53832 NADH
           dehydrogenase chain 11 - Acanthamoeba castellanii
           mitochondrion (SGC6) >gi|562036 (U12386) NADH
           dehydrogenase, subunit 11 [Acanthamoeba castellanii]
           Length = 675
           
 Score = 32.8 bits (73), Expect = 1.6
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 3   NSFSSYSFHTQWRFYTFYQ-SFTFKCYPFFFTLITHFYH 116
           NSF   SF ++   +  Y+ SF+FKC+ F+  L+ HF++
Sbjct: 601 NSFDLVSFLSESTPFILYKRSFSFKCFGFYEQLVYHFFN 639



>gi|1076195|pir||S49604 hypothetical protein 126 - euglenid (Astasia longa)
           >gi|1334340|emb|CAA57951| (X82630) ata start [Astasia
           longa]
           Length = 125
           
 Score = 31.7 bits (70), Expect = 3.5
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 256 KYINYIIFNLIHH*YMF*TSLSLSFICNIFYILK 155
           KYI Y IF+++ + Y F  S+ LS I NIF  +K
Sbjct: 83  KYIFYFIFDILCYIYWFIFSIFLSLIFNIFIYVK 116



>gi|3647350|emb|CAB10574| (Z97348) predicted using hexExon; MAL3P1.9 (PFC0135c), Chromosome
            region maintenance protein, len: 1203 aa; Similarity with
            eukaryotic chromosome maintenance protein. Human
            chromosome region maintenance protein (TR:Q99433). B...
            Length = 1203
            
 Score = 30.5 bits (67), Expect = 7.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 3    NSFSSYSFHTQWRFYTFYQSFTFKCYPFFFTLITHFYHS 119
            N FSSY  H + +FY F  +    C+ + FTL +  +++
Sbjct: 1013 NDFSSYPEHRE-KFYNFLDACVRHCFDYLFTLDSEIFNT 1050


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53013192
Number of Sequences: 369800
Number of extensions: 725434
Number of successful extensions: 2538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2536
Number of HSP's gapped (non-prelim): 3
length of query: 168
length of database: 113023754
effective HSP length: 52
effective length of query: 115
effective length of database: 93794154
effective search space: 10786327710
effective search space used: 10786327710
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)