BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-43F
         (283 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2131520|pir||S69646 hypothetical protein YDR479c - yeast (Sac...    30  5.1
gi|4507525|oth|NP_003253|PTLOC1 translocation protein 1 >gi|1817...    29  8.7


>gi|2131520|pir||S69646 hypothetical protein YDR479c - yeast (Saccharomyces cerevisiae)
           >gi|927746 (U33050) Ydr479cp; CAI: 0.11 [Saccharomyces
           cerevisiae]
           Length = 554
           
 Score = 29.7 bits (65), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 178 RILNWYSPVYXIQQFIKYKIHILTPFKV 95
           +ILNW +P Y +     Y + IL PF++
Sbjct: 145 KILNWTNPAYTVSIMFLYTLIILKPFQM 172



>gi|4507525|oth|NP_003253|PTLOC1 translocation protein 1 >gi|1817552|dbj|BAA13254| (D87127)
           translocation protein-1 [Homo sapiens] >gi|1928973
           (U93239) Sec62 [Homo sapiens]
           Length = 399
           
 Score = 29.0 bits (63), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (55%)

Query: 18  FPIPIKSVRENCRYLDIGLLIFLANLTLNGVRMCILYLM 134
           FP+    +R    YL +G   F+A++ L  V  CIL+L+
Sbjct: 213 FPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLI 251


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42970326
Number of Sequences: 369800
Number of extensions: 717976
Number of successful extensions: 1346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1344
Number of HSP's gapped (non-prelim): 2
length of query: 94
length of database: 113023754
effective HSP length: 50
effective length of query: 43
effective length of database: 94533754
effective search space: 4064951422
effective search space used: 4064951422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 63 (29.0 bits)