BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14VII-42F
(816 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|130808|sp|P19736|PR09_YEAST PRE-MRNA SPLICING FACTOR PRP9 >gi... 42 0.004
gi|1082798|pir||A55749 spliceosome-associated protein SAP 61 - h... 41 0.010
gi|1082801|pir||S53583 splicing factor SF3a60 - human >gi|551450... 41 0.010
gi|3879813|emb|CAA91420| (Z66524) Similarity at the 3' end with ... 40 0.022
gi|2832435|emb|CAA11045| (AJ223042) noisette [Drosophila melanog... 40 0.022
gi|2314015|gb|AAD07928| (AE000597) H. pylori predicted coding re... 32 3.8
gi|3764015|emb|CAA15608| (AL008970) predicted using hexExon; MAL... 32 5.0
gi|3135996|emb|CAA19057| (AL023589) splicesome-associated protei... 32 6.5
>gi|130808|sp|P19736|PR09_YEAST PRE-MRNA SPLICING FACTOR PRP9 >gi|83435|pir||S12320 PRP9 protein -
yeast (Saccharomyces cerevisiae) (strain S288C)
>gi|4241|emb|CAA37560| (X53466) PRP9 protein
[Saccharomyces cerevisiae] >gi|1279686|emb|CAA96459|
(Z71781) unknown [Saccharomyces cerevisiae]
>gi|1431008|emb|CAA98589| (Z74078) ORF YDL030w
[Saccharomyces cerevisiae]
Length = 530
Score = 42.2 bits (97), Expect = 0.004
Identities = 25/52 (48%), Positives = 38/52 (73%), Gaps = 19/52 (36%)
Query: 806 FFGILKLKEIEELQRNIEDREE-------------------NELYQEEVEDEQGNIYDKK 684
F GI K+KE +EL +N++ + + EL EE EDE+GN+ KK
Sbjct: 461 FKGITKIKEAQELWKNMQGQSQLTSIAAVPPKPNPSQLKVPTELELEE-EDEEGNVMSKK 519
Query: 683 TYEELKRLGML 651
Y+ELK+ G++
Sbjct: 520 VYDELKKQGLV 530
>gi|1082798|pir||A55749 spliceosome-associated protein SAP 61 - human >gi|508723 (U08815)
SAP 61 [Homo sapiens]
Length = 501
Score = 41.0 bits (94), Expect = 0.010
Identities = 20/52 (38%), Positives = 35/52 (66%), Gaps = 4/52 (7%)
Query: 806 FFGILKLKEIEELQRNIEDREENELYQ----EEVEDEQGNIYDKKTYEELKRLGML 651
F + ++++ L ++ ++ +E +Q EE ED GN+ +KKTYE+LKR G+L
Sbjct: 446 FANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501
>gi|1082801|pir||S53583 splicing factor SF3a60 - human >gi|551450|emb|CAA57388| (X81789)
splicing factor SF3a60 [Homo sapiens]
Length = 501
Score = 41.0 bits (94), Expect = 0.010
Identities = 20/52 (38%), Positives = 35/52 (66%), Gaps = 4/52 (7%)
Query: 806 FFGILKLKEIEELQRNIEDREENELYQ----EEVEDEQGNIYDKKTYEELKRLGML 651
F + ++++ L ++ ++ +E +Q EE ED GN+ +KKTYE+LKR G+L
Sbjct: 446 FANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501
>gi|3879813|emb|CAA91420| (Z66524) Similarity at the 3' end with the Yeast pre-mRNA splicing
factor PRP9 (PIR Acc. No. S12320); cDNA EST EMBL:C08800
comes from this gene; cDNA EST EMBL:C07438 comes from
this gene; cDNA EST yk494b4.3 comes from this gene...
Length = 835
Score = 39.9 bits (91), Expect = 0.022
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 806 FFGILKLKEIEELQRNIEDREE----NELYQEEVEDEQGNIYDKKTYEELKRLGML 651
F I K+K+ +L ++ +E N EE ED GN+ +K YE+LKR G+L
Sbjct: 780 FANITKIKDALDLWNKLKTEKEMAKWNPDIDEEYEDSSGNVVTRKMYEDLKRQGLL 835
>gi|2832435|emb|CAA11045| (AJ223042) noisette [Drosophila melanogaster]
Length = 503
Score = 39.9 bits (91), Expect = 0.022
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 791 KLKEIEELQRNIEDREENELYQEEVEDEQGNIYDKKTYEELKRLGML 651
KLK ++ +R + D+EE E ED GN+ ++KT+E+LKR G+L
Sbjct: 463 KLKSQKQSERWVADQEE------EFEDSLGNVVNRKTFEDLKRQGLL 503
>gi|2314015|gb|AAD07928| (AE000597) H. pylori predicted coding region HP0880 [Helicobacter
pylori 26695]
Length = 140
Score = 32.5 bits (72), Expect = 3.8
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 785 KEIEELQRNIEDREEN--ELYQEEVEDEQGNIYDKKTYEE 672
K++E++Q+++E+ EE EL++E DE+ +KKT +E
Sbjct: 74 KDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQE 113
>gi|3764015|emb|CAA15608| (AL008970) predicted using hexExon; MAL3P4.18 (PFC0475c),
Hypothetical protein, len: 482 aa [Plasmodium
falciparum]
Length = 481
Score = 32.1 bits (71), Expect = 5.0
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 800 GILKLKE-IEELQRNIEDREENELYQEEVEDEQGNIYD---KKTYEELKRL 660
GI K E I +++ N+ D EE E +EE E+E+ + YD KK +KR+
Sbjct: 347 GINKENEMINQVKNNLNDDEEEEEEEEEEEEEENDDYDVTFKKPSGTIKRI 397
>gi|3135996|emb|CAA19057| (AL023589) splicesome-associated protein [Schizosaccharomyces
pombe]
Length = 492
Score = 31.7 bits (70), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 749 REENELYQEEVEDEQGNIYDKKTYEELKRLGML 651
RE E+ED++GN+ +K Y +LK G+L
Sbjct: 460 RETTMASLNEMEDDEGNVMSEKVYNDLKAQGLL 492
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116994678
Number of Sequences: 368476
Number of extensions: 1901464
Number of successful extensions: 7468
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7460
Number of HSP's gapped (non-prelim): 8
length of query: 272
length of database: 112640273
effective HSP length: 54
effective length of query: 217
effective length of database: 92742569
effective search space: 20125137473
effective search space used: 20125137473
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)