BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-38F
         (641 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3845151 (AE001386) hypothetical protein [Plasmodium falciparum]     33  2.2
gi|3914943|sp|O51769|SBCD_BORBU EXONUCLEASE SBCD HOMOLOG >gi|268...    32  4.8
gi|3293496 (AF069182) NADH dehydrogenase 1 [Falciconus pseudopla...    32  4.8
gi|3293530 (AF069199) NADH dehydrogenase 1 [Trioxys betulae]           31  6.3
gi|2496847|sp|Q11095|YWZ5_CAEEL HYPOTHETICAL 49.8 KD PROTEIN C02...    31  6.3


>gi|3845151 (AE001386) hypothetical protein [Plasmodium falciparum]
            Length = 1712
            
 Score = 32.8 bits (73), Expect = 2.2
 Identities = 23/74 (31%), Positives = 37/74 (49%), Gaps = 1/74 (1%)

Query: 594  YNYTLKKYSXKHLVCPGERMXTIIPLSSKXFTINLKRRKARVGYGAQIEIDNTTIMEEQK 415
            Y Y ++KY   H++  G R+  I+    K + +     K R+ Y  +IE      ME+ K
Sbjct: 1118 YEYVIEKYKRVHVLYLG-RLLQIVEKLFKKYILKYSFHKLRIFYEYKIE------MEKLK 1170

Query: 414  KKYLN-LKQISDNRE 373
            K Y++ +  ISD  E
Sbjct: 1171 KNYIHCIYDISDKLE 1185



>gi|3914943|sp|O51769|SBCD_BORBU EXONUCLEASE SBCD HOMOLOG >gi|2688778 (AE001181) exonuclease SbcD
           (sbcD) [Borrelia burgdorferi]
           Length = 413
           
 Score = 31.7 bits (70), Expect = 4.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 210 ISPSKTLILRFNLFIILHKDSNSFICLIFXNSTIIFLXSC 329
           +S +K L+ RFN F+I   DS+  I L+  N  + F+  C
Sbjct: 94  LSINKKLLSRFNFFLITEYDSDEQIVLLKDNGNLKFIVVC 133



>gi|3293496 (AF069182) NADH dehydrogenase 1 [Falciconus pseudoplatani]
           Length = 155
           
 Score = 31.7 bits (70), Expect = 4.8
 Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 6/37 (16%)

Query: 105 YFFNALSPTLLIILSKAIFLI-----SSSNILF-FMIFTCLIS 215
           ++F  LSP L+  L  +++LI     +SSN+ F FM F CL+S
Sbjct: 22  FYFYMLSPMLMFTLILSLYLIYPFFTNSSNMTFNFMFFLCLLS 64



>gi|3293530 (AF069199) NADH dehydrogenase 1 [Trioxys betulae]
           Length = 155
           
 Score = 31.3 bits (69), Expect = 6.3
 Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 6/39 (15%)

Query: 105 YFFNALSPTLLIILSKAIFLI-----SSSNILF-FMIFTCLISPS 221
           ++F  LSP L+ +L  +++LI     +SSN+ F FM F C++S S
Sbjct: 22  FYFYLLSPMLMFLLILSLWLIYPFITNSSNMNFNFMFFLCMLSMS 66



>gi|2496847|sp|Q11095|YWZ5_CAEEL HYPOTHETICAL 49.8 KD PROTEIN C02B8.5 IN CHROMOSOME X >gi|1065523
           (U40421) C02B8.5 gene product [Caenorhabditis elegans]
           Length = 453
           
 Score = 31.3 bits (69), Expect = 6.3
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 117 ALSPTLLIILSKAIFLIS---------SSNILFFMIFTCLISPSKTLILRFNLFIILHKD 269
           A+ P LL+I+     +IS          S+I+  ++  CL      L L  N   +L   
Sbjct: 112 AVGPVLLLIVINTAIVISMRRSSSPNSESDIITLVLVVCLFISCNVLPLTVNFLELLFGI 171

Query: 270 SNSFICLIFXNSTIIFLXSCNF 335
            NS++ +   N  ++   SCNF
Sbjct: 172 INSYL-IDLSNLMVVVNSSCNF 192


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81640495
Number of Sequences: 369800
Number of extensions: 1175082
Number of successful extensions: 3809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3806
Number of HSP's gapped (non-prelim): 7
length of query: 213
length of database: 113,023,754
effective HSP length: 53
effective length of query: 160
effective length of database: 93424354
effective search space: 14947896640
effective search space used: 14947896640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)