BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-36F
         (613 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|4049841 (AF063866) ORF MSV119 putative RNA polymerase associa...    32  4.5
gi|2688310 (AE001145) B. burgdorferi predicted coding region BB0...    31  7.8


>gi|4049841 (AF063866) ORF MSV119 putative RNA polymerase associated  vaccinia
           RAP94 homolog (vaccinia H4L), similar to SW:P33067
           [Melanoplus sanguinipes entomopoxvirus]
           Length = 807
           
 Score = 31.7 bits (70), Expect = 4.5
 Identities = 29/108 (26%), Positives = 52/108 (47%), Gaps = 14/108 (12%)

Query: 364 YDLVLNSKNLQEQDKY--------LISFYLTSN-----YTEDKDYSEQRTLKEMVVLLLS 224
           Y + +N+  L  Q++Y        L    LT+N     Y E + + EQR +  M+V++++
Sbjct: 431 YMIHINNNRLMYQEEYKHEIDTSGLFFVRLTNNIFMSEYNEKEQFREQRMINIMIVIIIT 490

Query: 223 ITXXXXXXXXXXXXSTIQENRLFERIQEYNEVNN-IRSAISNSSVKXXXSLKNKLNKIID 47
           +               ++   +F+RI     +N  I   +S   VK    +KN    +I 
Sbjct: 491 LV---LVNNFNELIGIVKRKDMFKRIDFKKGINELIIEIVSEYIVKQGIDIKNLNIPVII 547

Query: 46  NT 41
           NT
Sbjct: 548 NT 549



>gi|2688310 (AE001145) B. burgdorferi predicted coding region BB0398 [Borrelia
           burgdorferi]
           Length = 343
           
 Score = 30.9 bits (68), Expect = 7.8
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 544 YXRYIDVLERIANLSDY-FQIQKEHFRVNKPVVQFTSKAANEI---LIVLKSXLDNI--A 383
           Y R +D      N  DY ++      RV K +V     + ++I     +L   +DN+   
Sbjct: 105 YKRVVD------NFDDYVYENHSMKTRVAKKIVNLNIDSIDKINYYKFILNMGIDNLNNE 158

Query: 382 DKHDYFYDLVLNSKNLQEQDK 320
           +K +YFY+L L+ +++Q+ D+
Sbjct: 159 EKGNYFYNLALSLEDVQDYDE 179


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86104180
Number of Sequences: 369800
Number of extensions: 1370499
Number of successful extensions: 4125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4120
Number of HSP's gapped (non-prelim): 10
length of query: 204
length of database: 113,023,754
effective HSP length: 53
effective length of query: 150
effective length of database: 93424354
effective search space: 14013653100
effective search space used: 14013653100
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)