BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-18F
         (500 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2688460 (AE001156) chemotaxis response regulator (cheY-1) [Bo...    31  7.7


>gi|2688460 (AE001156) chemotaxis response regulator (cheY-1) [Borrelia
           burgdorferi]
           Length = 133
           
 Score = 30.5 bits (67), Expect = 7.7
 Identities = 21/81 (25%), Positives = 40/81 (48%), Gaps = 1/81 (1%)

Query: 144 LKSWKQIKMIDDMLANINTKPKLISQLSYDLFIEYENNITMLETMVIHEG-DIYXLNIIS 320
           L+  K+  + DD L       K++SQL +  F+E E+ I  ++        D+  L+I  
Sbjct: 8   LEESKKALIADDSLFMRKNLIKILSQLGFKEFLEAEDGIQAVKEFEKQNNIDLITLDITM 67

Query: 321 ITVNGLVNTLRKYDLLK*IKNK 386
           + ++G+    R Y++ K +  K
Sbjct: 68  MGMDGITALERMYEINKKLLKK 89


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71434338
Number of Sequences: 368476
Number of extensions: 1071165
Number of successful extensions: 2681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2681
Number of HSP's gapped (non-prelim): 1
length of query: 166
length of database: 112640273
effective HSP length: 52
effective length of query: 114
effective length of database: 93479521
effective search space: 10656665394
effective search space used: 10656665394
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)