BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14-46F
         (460 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|487257 (U09127) envelope glycoprotein [Human immunodeficiency...    32  2.3
gi|924357 (U13477) envelope glycoprotein V1V2 region [Human immu...    32  2.3
gi|1890691 (U51190) envelope glycoprotein [Human immunodeficienc...    32  2.3
gi|924355 (U13476) envelope glycoprotein V1V2 region [Human immu...    32  2.3
gi|924349 (U13473) envelope glycoprotein V1V2 region [Human immu...    32  2.3
gi|531237|dbj|BAA07195| (D37977) sodium channel alpha subunit [F...    31  6.8
gi|2501467|sp|P75124|GALU_MYCPN UTP--GLUCOSE-1-PHOSPHATE URIDYLY...    30  8.9


>gi|487257 (U09127) envelope glycoprotein [Human immunodeficiency virus type
           1] >gi|995577 (U15119) envelope glycoprotein [Human
           immunodeficiency virus type 1]
           Length = 856
           
 Score = 32.1 bits (71), Expect = 2.3
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 132 YNQVNNIRSAISNSSVKVKESLKN 61
           YN  NNI ++I+NSSV ++E +KN
Sbjct: 130 YNITNNITNSITNSSVNMREEIKN 153



>gi|924357 (U13477) envelope glycoprotein V1V2 region [Human immunodeficiency
           virus type 1]
           Length = 96
           
 Score = 32.1 bits (71), Expect = 2.3
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 132 YNQVNNIRSAISNSSVKVKESLKN 61
           YN  NNI S+I+NS+V ++E +KN
Sbjct: 20  YNITNNITSSITNSTVNMREEIKN 43



>gi|1890691 (U51190) envelope glycoprotein [Human immunodeficiency virus type
           1]
           Length = 857
           
 Score = 32.1 bits (71), Expect = 2.3
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 132 YNQVNNIRSAISNSSVKVKESLKN 61
           YN  NNI ++I+NSSV ++E +KN
Sbjct: 132 YNITNNITNSITNSSVNMREEIKN 155



>gi|924355 (U13476) envelope glycoprotein V1V2 region [Human immunodeficiency
           virus type 1]
           Length = 93
           
 Score = 32.1 bits (71), Expect = 2.3
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 132 YNQVNNIRSAISNSSVKVKESLKN 61
           YN  NNI ++I+NSSV ++E +KN
Sbjct: 20  YNITNNITNSITNSSVNMREEIKN 43



>gi|924349 (U13473) envelope glycoprotein V1V2 region [Human immunodeficiency
           virus type 1]
           Length = 95
           
 Score = 32.1 bits (71), Expect = 2.3
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 132 YNQVNNIRSAISNSSVKVKESLKN 61
           YN  NNI S+I+NS+V ++E +KN
Sbjct: 20  YNITNNITSSITNSTVNMREEIKN 43



>gi|531237|dbj|BAA07195| (D37977) sodium channel alpha subunit [Fugu rubripes]
            Length = 1717
            
 Score = 30.5 bits (67), Expect = 6.8
 Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 5/39 (12%)

Query: 116  LFTWLYY*ILSNNLFC-----CIVEDFNNRSKRLFPLVILNNKT 232
            L  WL + I+  NLF      C    FN  S+ +FP+ ++NNKT
Sbjct: 1101 LIFWLIFSIMGVNLFAGKYYFC----FNETSEEMFPVDVVNNKT 1140



>gi|2501467|sp|P75124|GALU_MYCPN UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (UDP-GLUCOSE
           PYROPHOSPHORYLASE) (UDPGP) (ALPHA-D-GLUCOSYL-1-PHOSPHATE
           URIDYLYLTRANSFERASE) (URIDINE DIPHOSPHOGLUCOSE
           PYROPHOSPHORYLASE) >gi|2146691|pir||S73501 UDP-glucose
           pyrophosphorylase gtaB - Mycoplasma pneumoniae (SGC3)
           (ATCC 29342) >gi|1673837 (AE000018) Mycoplasma
           pneumoniae, UDP-glucose pyrophosphorylase; similar to
           Swiss-Prot Accession Number Q05852, from B. subtilis
           [Mycoplasma pneumoniae]
           Length = 291
           
 Score = 30.1 bits (66), Expect = 8.9
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 459 VNKPVVQFTSKAA-----NEILIVLKSXLDNIADKHDYFYDLVLNSKNLQE 322
           VNKP +Q+  + A      EIL+++ S  + I D  D  YD +L +  LQ+
Sbjct: 33  VNKPTIQYIVEEAVASGIKEILVIVSSKKEAIIDHFD--YDFILENALLQK 81


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61043902
Number of Sequences: 369800
Number of extensions: 906337
Number of successful extensions: 2523
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2518
Number of HSP's gapped (non-prelim): 7
length of query: 153
length of database: 113023754
effective HSP length: 52
effective length of query: 100
effective length of database: 93794154
effective search space: 9379415400
effective search space used: 9379415400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)