BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14-33F
(664 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3047117 (AF058919) similar to ATP-dependent RNA helicases [Ar... 163 1e-39
gi|3775993|emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis th... 161 5e-39
gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICA... 161 5e-39
gi|3386613 (AC004665) putative ATP-dependent RNA helicase [Arabi... 161 6e-39
gi|1174456|sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELIC... 160 1e-38
gi|4493972|emb|CAB39031| (AL034559) predicted using hexExon; MAL... 158 3e-38
gi|3776001|emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis th... 157 5e-38
gi|126938|sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICA... 153 1e-36
gi|103314|pir||A39157 probable helicase (EC 3.6.1.-) - fruit fly... 153 1e-36
gi|1709533|sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 >... 148 4e-35
gi|2745894|gb|AAB94769| (AF038995) putative RNA helicase RCK [Mu... 146 1e-34
gi|2136088|pir||I52691 RCK - human >gi|458727|dbj|BAA04482| (D17... 146 1e-34
gi|1709532|sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT RNA HELIC... 146 1e-34
gi|129376|sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICA... 146 1e-34
gi|2500523|sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A ... 85 3e-16
gi|3775991|emb|CAA09198| (AJ010459) RNA helicase [Arabidopsis th... 85 4e-16
gi|124217|sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A (... 83 2e-15
gi|124218|sp|P10081|IF4A_YEAST EUKARYOTIC INITIATION FACTOR 4A (... 80 1e-14
gi|3002483|gb|AAC24685| (AE001274) EIF-4A; L3162.6 [Leishmania m... 78 4e-14
gi|2500514|sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION F... 78 4e-14
gi|1708418|sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A ... 76 2e-13
gi|3776005|emb|CAA09205| (AJ010466) RNA helicase [Arabidopsis th... 75 6e-13
gi|2500533|sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELIC... 72 3e-12
gi|4490565|emb|CAB38640| (Y17288) RNA helicase [Plasmodium falci... 71 6e-12
gi|1177010|sp|P42305|YXIN_BACSU PROBABLE RNA HELICASE IN WAPA-LI... 71 9e-12
gi|2370591|emb|CAA73167| (Y12590) translation initiation factor ... 70 2e-11
gi|1352438|sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A-... 70 2e-11
gi|90965|pir||S00986 translation initiation factor eIF-4A I - mouse 69 2e-11
gi|72888|pir||FIMS4A translation initiation factor eIF-4A - mous... 69 2e-11
gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC INITIATION FACTOR 4A-I... 69 2e-11
gi|50815|emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) [... 69 2e-11
gi|90964|pir||JS0039 translation initiation factor eIF-4A - mous... 69 2e-11
gi|266336|sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I... 69 2e-11
gi|2408027|emb|CAB16225| (Z99162) atp-dependent rna helicase [Sc... 69 3e-11
gi|1749748|dbj|BAA13931| (D89270) similar to Saccharomyces cerev... 69 3e-11
gi|2370593|emb|CAA73168| (Y12591) translation initiation factor ... 69 3e-11
gi|2500524|sp|Q12099|FAL1_YEAST PROBABLE ATP-DEPENDENT RNA HELIC... 69 4e-11
gi|2507330|sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A-... 68 8e-11
gi|50823|emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - 4... 68 8e-11
gi|673433|emb|CAA40268| (X56953) protein synthesis initiation fa... 68 8e-11
gi|2500540|sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELIC... 67 1e-10
gi|1688326 (U78759) IfdA [Dictyostelium discoideum] 67 1e-10
gi|2150025 (AF001211) translation initiation factor [Cryptospori... 67 1e-10
gi|2773184 (AF039720) similar to the "DEAD" box family of helica... 67 1e-10
gi|532817 (U13876) highly similar to eukaryotic initiation facto... 66 2e-10
gi|1170507|sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A-... 66 2e-10
gi|476338 (U08102) putative RNA helicase [Caenorhabditis elegans] 66 2e-10
gi|462401|sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A (... 66 2e-10
gi|2500513|sp|Q14240|IF42_HUMAN EUKARYOTIC INITIATION FACTOR 4A-... 66 3e-10
gi|3775985|emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis th... 66 3e-10
gi|729821|sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-L... 65 5e-10
gi|1905998 (U90426) nuclear RNA helicase [Homo sapiens] 64 7e-10
gi|2500530|sp|Q29024|HE47_PIG PROBABLE ATP-DEPENDENT RNA HELICAS... 64 7e-10
gi|3132829 (AF063447) nuclear RNA helicase [Rattus norvegicus] 64 7e-10
gi|2104219|dbj|BAA04879| (D21853) KIAA0111 [Homo sapiens] 64 7e-10
gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase [Plas... 64 7e-10
gi|2500521|sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 64 7e-10
gi|3776021|emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis th... 64 7e-10
gi|2500529|sp|Q13838|HE47_HUMAN PROBABLE ATP-DEPENDENT RNA HELIC... 64 9e-10
gi|4235116 (AF118128) nuclear RNA helicase Bat1 [Mus musculus] 64 9e-10
gi|2739119 (AF029061) BAT1 [Homo sapiens] 64 9e-10
gi|3712663 (AF029062) DEAD-box protein [Homo sapiens] 64 9e-10
gi|2500534|sp|Q07478|HE47_YEAST PROBABLE ATP-DEPENDENT RNA HELIC... 64 9e-10
gi|2443810 (AF020432) eukaryotic translation initiation factor X... 64 9e-10
gi|446778|prf||1912301A initiation factor eIF-4A [Drosophila mel... 64 1e-09
gi|1170506|sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-... 63 2e-09
gi|1170508|sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 63 2e-09
gi|2500517|sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 63 2e-09
gi|2119932|pir||S52017 translation initiation factor eIF-4A.9 - ... 63 2e-09
gi|2119935|pir||S52020 translation initiation factor eIF-4A.15 -... 63 2e-09
gi|2500515|sp|Q40469|IF46_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 63 2e-09
gi|2119936|pir||S52021 translation initiation factor eIF-4A.6 - ... 63 2e-09
gi|2500518|sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 63 2e-09
gi|2119933|pir||S52018 translation initiation factor eIF-4A.11 -... 63 2e-09
gi|2500532|sp|Q27268|HE47_DROME PROBABLE ATP-DEPENDENT RNA HELIC... 62 3e-09
gi|2119937|pir||S52022 translation initiation factor eIF-4A.13 -... 62 4e-09
gi|1170503|sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-... 62 4e-09
gi|2341061 (U73459) translational initiation factor eIF-4A [Zea ... 62 4e-09
gi|2119934|pir||S52019 translation initiation factor eIF-4A.7 - ... 62 5e-09
gi|2500522|sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A ... 62 5e-09
gi|2500531|sp|Q63413|HE47_RAT PROBABLE ATP-DEPENDENT RNA HELICAS... 62 5e-09
gi|539961|pir||A42811 translation initiation factor eIF-4A homol... 62 5e-09
gi|2286151 (AF007580) translation initiation factor [Zea mays] 62 5e-09
gi|4490561|emb|CAB38638| (Y17289) RNA helicase [Plasmodium cynom... 62 5e-09
gi|2119938|pir||S52023 translation initiation factor eIF-4A.14 -... 61 6e-09
gi|1170511|sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 61 8e-09
gi|1170505|sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-... 61 8e-09
gi|2500519|sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 61 8e-09
gi|2500516|sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 61 1e-08
gi|1944405|dbj|BAA19572| (D86601) DEAD family RNA helicase; germ... 61 1e-08
gi|1170509|sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A ... 61 1e-08
gi|2500520|sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-... 60 1e-08
gi|95749|pir||S12698 probable RNA helicase - Escherichia coli >g... 60 2e-08
gi|3165536 (AF067608) similar to DEAD-box helicases (Pfam: DEAD.... 60 2e-08
gi|416881|sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA >... 60 2e-08
gi|3845295 (AE001421) RNA helicase [Plasmodium falciparum] 59 3e-08
gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A family ... 59 4e-08
gi|2500537|sp|Q03532|HAS1_YEAST PROBABLE ATP-DEPENDENT RNA HELIC... 58 5e-08
gi|547712|sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A (... 58 7e-08
gi|1764094 (U81597) ATP-dependent RNA helicase [Leishmania amazo... 57 2e-07
gi|1351666|sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELIC... 55 5e-07
gi|1881268|dbj|BAA19295| (AB001488) ATP-DEPENDENT RNA HELICASE D... 55 5e-07
gi|2134051|pir||I51235 DEAD box protein - African clawed frog (f... 54 1e-06
gi|548730|sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICA... 53 2e-06
gi|226021|prf||1406327A growth regulated nuclear 68 protein [Hom... 53 2e-06
gi|465975|sp|P34580|YN21_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICA... 53 2e-06
gi|2500527|sp|Q61656|DDX5_MOUSE PROBABLE RNA-DEPENDENT HELICASE ... 53 2e-06
gi|129383|sp|P17844|DDX5_HUMAN PROBABLE RNA-DEPENDENT HELICASE P... 53 2e-06
gi|134787|sp|P25808|SPB4_YEAST ATP-DEPENDENT RRNA HELICASE SPB4 ... 53 2e-06
gi|3775997|emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis th... 53 2e-06
gi|1731006|sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SO... 53 2e-06
gi|1706338|sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD ... 51 9e-06
gi|3877954|emb|CAB04518| (Z81555) similar to ATP-dependent helic... 50 1e-05
gi|1175426|sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELIC... 50 1e-05
gi|84895|pir||A31922 ATP-dependent RNA helicase homolog - fruit ... 50 2e-05
gi|2231116|emb|CAA65745| (X97017) heat resistant RNA dependent A... 50 2e-05
gi|3986287|dbj|BAA34994| (AB017003) DjVLGB [Dugesia japonica] 50 2e-05
gi|1708151|sp|P20447|DBP3_YEAST PROBABLE ATP-DEPENDENT RNA HELIC... 50 2e-05
gi|4454799|gb|AAD20980| (AF079782) translation initiation factor... 50 2e-05
gi|1001719|dbj|BAA10556| (D64004) ATP-dependent RNA helicase Dea... 49 3e-05
gi|4409804|gb|AAD20136| (AF091502) autoaggregation-mediating pro... 49 3e-05
gi|3122595|sp|Q92841|P72_HUMAN PROBABLE RNA-DEPENDENT HELICASE P... 49 3e-05
gi|1658275 (U74626) ATP dependent RNA helicase [Neurospora crassa] 48 5e-05
gi|2443870 (AC002985) R27090_2 [Homo sapiens] 48 5e-05
gi|1352826|sp|P09052|VASA_DROME VASA PROTEIN >gi|1054723|emb|CAA... 48 6e-05
gi|2558535|emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Danio... 48 6e-05
gi|3288677|dbj|BAA31233| (D89592) rhlE [Vibrio alginolyticus] 48 6e-05
gi|4126714|dbj|BAA36710| (AB016603) DEAD-Box Protein [Ciona inte... 48 8e-05
gi|4126716|dbj|BAA36711| (AB016604) DEAD-Box Protein [Ciona inte... 48 8e-05
gi|3149952|dbj|BAA28347| (AB010259) DRH1 [Arabidopsis thaliana] 47 1e-04
gi|3776029|emb|CAA09215| (AJ010476) RNA helicase [Arabidopsis th... 47 1e-04
gi|407992 (L25125) RNA helicase [Mus musculus] 47 1e-04
gi|133134|sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELICA... 47 1e-04
gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-family (d... 47 1e-04
gi|1173121|sp|P45818|ROK1_YEAST ATP-DEPENDENT RNA HELICASE ROK1 ... 47 1e-04
gi|2463519|dbj|BAA22535| (AB005147) vas [Danio rerio] 46 2e-04
gi|2500525|sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLOG... 46 2e-04
gi|1707017 (U78721) RNA helicase isolog [Arabidopsis thaliana] 46 2e-04
gi|2088766 (AF003145) strong similarity to the 'DEAD' box family... 46 2e-04
gi|1706311|sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT RNA HELIC... 46 2e-04
gi|3641|emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae] 46 2e-04
gi|118284|sp|P24783|DBP2_YEAST P68-LIKE PROTEIN >gi|83509|pir||S... 46 3e-04
gi|3775995|emb|CAA09200| (AJ010461) RNA helicase [Arabidopsis th... 46 3e-04
gi|1399945 (U60194) RNA helicase GLH-2 [Caenorhabditis elegans] ... 46 3e-04
gi|3335268 (L19948) RNA helicase [Caenorhabditis elegans] 45 4e-04
gi|2558968 (AF025536) suppressor of uncontrolled mitosis [Schizo... 45 4e-04
gi|2992158|dbj|BAA25324| (AB012389) Moc2 RNA helicase [Schizosac... 45 4e-04
gi|462179|sp|P34689|GLH1_CAEEL ATP-DEPENDENT RNA HELICASE GLH-1 ... 45 4e-04
gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema pall... 45 4e-04
gi|3108197 (AF005239) DEAD-box helicase [Drosophila melanogaster] 45 4e-04
gi|3776031|emb|CAA09216| (AJ010477) RNA helicase [Arabidopsis th... 45 5e-04
gi|1169228|sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 >... 45 5e-04
gi|4559339|gb|AAD23001|AC007087_20 (AC007087) putative ATP-depen... 45 7e-04
gi|2558533|emb|CAA73349| (Y12819) putative RNA helicase (DEAD bo... 45 7e-04
gi|1438969 (U62772) RNA helicase [Caenorhabditis elegans] 44 9e-04
gi|1947009 (AF000197) C. elegans ATP-dependent RNA helicase GLH-... 44 9e-04
gi|3775989|emb|CAA09197| (AJ010458) RNA helicase [Arabidopsis th... 44 0.001
gi|4490563|emb|CAB38639| (Y17287) RNA helicase [Plasmodium falci... 44 0.001
gi|2500526|sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG) ... 44 0.001
gi|134878|sp|P21507|SRMB_ECOLI ATP-DEPENDENT RNA HELICASE SRMB >... 44 0.001
gi|2313340|gb|AAD07315| (AE000544) ATP-dependent RNA helicase, D... 43 0.002
gi|4493977|emb|CAB39036| (AL034559) predicted using hexExon; MAL... 43 0.002
gi|227525|prf||1705301A ATP dependent RNA helicase [Xenopus laevis] 43 0.002
gi|1183961|emb|CAA93395| (Z69382) RNA elicase [Saccharomyces cer... 43 0.002
gi|3986285|dbj|BAA34993| (AB017002) DjVLGA [Dugesia japonica] 43 0.002
gi|3097266|emb|CAA76677| (Y17186) translation initiation factor ... 43 0.002
gi|586550|sp|P38112|MAK5_YEAST ATP-DEPENDENT RNA HELICASE MAK5 >... 43 0.003
gi|3023628|sp|O00571|DDX3_HUMAN DEAD BOX PROTEIN 3 (HELICASE-LIK... 42 0.003
gi|2580550 (AF000982) dead box, X isoform [Homo sapiens] >gi|258... 42 0.003
gi|113825|sp|P24346|AN3_XENLA PUTATIVE ATP-DEPENDENT RNA HELICAS... 42 0.003
gi|4539604|emb|CAB40015| (AL049522) u5 snrnp-like RNA helicase s... 42 0.004
gi|3776025|emb|CAA09213| (AJ010474) RNA helicase [Arabidopsis th... 42 0.004
gi|731740|sp|P38719|DBP8_YEAST PROBABLE ATP-DEPENDENT RNA HELICA... 42 0.004
gi|3775987|emb|CAA09196| (AJ010457) RNA helicase [Arabidopsis th... 42 0.004
gi|3047077 (AF058914) contains similarity to the conserved C-ter... 42 0.004
gi|84894|pir||S01676 ATP-dependent RNA helicase homolog - fruit ... 42 0.004
gi|130256|sp|P16381|PL10_MOUSE PUTATIVE ATP-DEPENDENT RNA HELICA... 42 0.004
gi|3879543|emb|CAA90406| (Z50071) similar to ATP-dependent helic... 42 0.004
gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 42 0.004
gi|3879544|emb|CAA90407| (Z50071) similar to ATP-dependent helic... 42 0.004
gi|118411|sp|P06634|DED1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICA... 42 0.004
gi|227524|prf||1705300A ATP dependent RNA helicase [Saccharomyce... 42 0.004
gi|3879545|emb|CAA90408| (Z50071) similar to ATP-dependent helic... 42 0.004
gi|1076832|pir||S53814 DEAD box protein - slime mold (Dictyostel... 41 0.006
gi|2072674|emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculosis] 41 0.006
gi|2500528|sp|Q62167|DDX3_MOUSE DEAD BOX PROTEIN 3 (DEAD-BOX RNA... 41 0.008
gi|1363226|pir||S56112 RNA helicase (ERH) - mouse 41 0.008
gi|421132|pir||S30675 mmrA protein - Escherichia coli >gi|148184... 40 0.013
gi|132530|sp|P24229|RHLB_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICA... 40 0.013
gi|280089|pir||S23696 probable ATP-dependent RNA helicase - Esch... 40 0.013
gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces pombe] ... 40 0.013
gi|118283|sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|82829|pir||S... 40 0.013
gi|554262 (L25337) RNA helicase [Mus musculus] 40 0.013
gi|1708152|sp|P20449|DBP5_YEAST PROBABLE ATP-DEPENDENT RNA HELIC... 40 0.013
gi|3790186|emb|CAA07483| (AJ007376) DBY protein [Mus musculus] 40 0.013
gi|1172596|sp|P23394|PR28_YEAST PRE-MRNA SPLICING FACTOR RNA HEL... 39 0.023
gi|226183|prf||1413329A gene vasa [Drosophila melanogaster] 39 0.039
gi|3776023|emb|CAA09212| (AJ010473) RNA helicase [Arabidopsis th... 39 0.039
gi|1175447|sp|Q09775|YA88_SCHPO PUTATIVE ATP-DEPENDENT RNA HELIC... 38 0.051
gi|3800886 (AF099926) contains similarity to DEAD-box helicases ... 38 0.051
gi|4104820|gb|AAD02177| (AF040045) DEAD box RNA helicase homolog... 38 0.051
gi|1172924|sp|P44922|RHLB_HAEIN ATP-DEPENDENT RNA HELICASE RHLB ... 38 0.067
gi|2580554 (AF000984) dead box, Y isoform [Homo sapiens] >gi|258... 38 0.067
gi|171656 (L00683) ATP-dependent RNA helicase [Saccharomyces cer... 38 0.067
gi|1706521|sp|P32892|DRS1_YEAST PUTATIVE ATP-DEPENDENT RNA HELIC... 38 0.067
gi|96321|pir||A42357 probable ATP-dependent RNA helicase deaD - ... 38 0.088
gi|3646126|emb|CAA09374| (AJ010840) ATP-dependent RNA helicase [... 38 0.088
gi|461923|sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD 38 0.088
gi|606102 (U18997) two frameshifts relative to ECODEAD [Escheric... 38 0.088
gi|2655202 (AF026402) U5 snRNP 100 kD protein [Homo sapiens] 37 0.11
gi|3122189|sp|Q26696|HE64_TRYBB PUTATIVE DEAD BOX RNA HELICASE H... 37 0.11
gi|1351656|sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELIC... 37 0.11
gi|3687476|emb|CAA21146| (AL031786) putative atp dependent rna h... 37 0.15
gi|461924|sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD >... 36 0.20
gi|226216|prf||1501351A eIF 4A-like protein [Escherichia coli] 36 0.20
gi|78328|pir||S06451 ATP-dependent RNA helicase homolog - Escher... 36 0.20
gi|731667|sp|P38712|RRP3_YEAST ATP-DEPENDENT RRNA HELICASE RRP3 ... 36 0.20
gi|1174440|sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB ... 36 0.20
gi|1723147|sp|P52271|Y308_MYCGE PROBABLE RNA HELICASE MG308 >gi|... 36 0.26
gi|4008414|emb|CAB07418| (Z92839) predicted using Genefinder; si... 36 0.34
gi|3184061|emb|CAA19304| (AL023776) atp dependent helicase [Schi... 36 0.34
gi|3337394 (AC004531) Gene with similaity to DEAD box helicases ... 35 0.44
gi|2367402 (U86382) mitochondrial DEAD box protein [Trypanosoma ... 35 0.58
gi|544270|sp|P35599|EXP9_STRPN EXPORTED PROTEIN 9 >gi|398101 (L2... 34 0.76
gi|130806|sp|P21372|PR05_YEAST PRE-MRNA PROCESSING RNA HELICASE ... 34 0.76
gi|3861207|emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA H... 34 1.00
gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase [Arabid... 34 1.00
gi|3116113|emb|CAA18864| (AL023286) probable atp-dependent rna h... 34 1.00
gi|1401206 (U58510) pre-mRNA splicing factor PRP 6 homolog [Chlo... 34 1.00
gi|3874996|emb|CAB03765| (Z81449) similar to ATP-dependent RNA h... 34 1.3
gi|4493986|emb|CAB39045| (AL034559) predicted using hexExon; MAL... 34 1.3
gi|529704 (U13070) similar to RNA helicases [Caenorhabditis eleg... 34 1.3
gi|4493987|emb|CAB39046| (AL034559) predicted using hexExon; MAL... 34 1.3
gi|2773233 (AF039718) similar to "DEAD" box helicases [Caenorhab... 33 1.7
gi|3386540 (AF079508) germline RNA helicase-4 [Caenorhabditis el... 33 1.7
gi|1536826|dbj|BAA11901| (D83386) UORF6 [Shewanella sp. DSS12] 33 1.7
gi|4490304|emb|CAB38795| (AL035678) putative protein [Arabidopsi... 33 1.7
gi|2500535|sp|Q12389|YD31_YEAST PUTATIVE ATP-DEPENDENT RNA HELIC... 33 2.2
gi|1169261|sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD ... 33 2.2
gi|2833565|sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PREC... 33 2.2
gi|2245018|emb|CAB10438| (Z97341) unnamed protein product [Arabi... 33 2.2
gi|3581903|emb|CAA20842| (AL031545) DEAD box ATP-dependent RNA h... 33 2.2
gi|3776027|emb|CAA09214| (AJ010475) RNA helicase [Arabidopsis th... 33 2.2
gi|1488521|emb|CAA68194| (X99938) RNA helicase [Arabidopsis thal... 32 2.9
gi|1076837|pir||S53813 probable RNA helicase - slime mold (Dicty... 32 2.9
gi|4538903|emb|CAB39640| (AL049482) putative protein [Arabidopsi... 32 2.9
gi|4832|emb|CAA41110| (X58099) eIF4a [Saccharomyces cerevisiae] 32 3.8
gi|1175401|sp|Q09719|YA47_SCHPO PUTATIVE ATP-DEPENDENT RNA HELIC... 32 3.8
gi|3758843|emb|CAB11128| (Z98551) predicted using hexExon; MAL3P... 32 3.8
gi|1488647|emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea] 32 3.8
gi|887563|emb|CAA80490| (Z22868) serine/threonine-protein kinase... 32 3.8
gi|1127775 (U40244) RNA helicase [unidentified archaeon 4B7] 32 3.8
gi|3024353|sp|P56255|PCRA_BACST ATP-DEPENDENT HELICASE PCRA >gi|... 32 5.0
gi|4049854 (AF063866) ORF MSV069 putative rifampicin resistance ... 32 5.0
gi|3776003|emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis th... 32 5.0
gi|3878881|emb|CAA99891| (Z75546) similar to ATP dependent RNA h... 32 5.0
gi|3845138 (AE001383) RAD2 endonuclease [Plasmodium falciparum] 32 5.0
gi|3845280 (AE001418) hypothetical protein [Plasmodium falciparum] 31 6.6
gi|3845222 (AE001404) hypothetical protein [Plasmodium falciparum] 31 8.6
gi|1723271|sp|Q10202|YAXB_SCHPO PUTATIVE ATP-DEPENDENT RNA HELIC... 31 8.6
>gi|3047117 (AF058919) similar to ATP-dependent RNA helicases [Arabidopsis
thaliana]
Length = 499
Score = 163 bits (408), Expect = 1e-39
Identities = 89/220 (40%), Positives = 126/220 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS EF ++++LI L +++ + ++SATFP VKDF ++ N I
Sbjct: 271 LVMDEADKLLSQEFQPSVEHLISFLPESRQ----ILMFSATFPVTVKDFKDRFLTNPYVI 326
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM EL+L GI QFYA V+ ++K+HCL TL +K++ Q IIFCN+VN VELLA K+T++G
Sbjct: 327 NLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG 386
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM Q+ RN+VFH+F
Sbjct: 387 YIHAKMLQDHRNRVFHDFRNG----------------------------------- 411
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 412 ------------ACRNLVCTDLFTRGIDIQAVNVVINFDF 439
>gi|3775993|emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis thaliana]
Length = 505
Score = 161 bits (403), Expect = 5e-39
Identities = 89/220 (40%), Positives = 125/220 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS EF ++++LI L +++ + ++SATFP VKDF ++ N I
Sbjct: 277 LVMDEADKLLSQEFQPSVEHLISFLPESRQ----ILMFSATFPVTVKDFKDRFLTNPYVI 332
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM EL+L GI QFYA V+ ++K+HCL TL +K++ Q IIFCN+VN VELLA K+T++G
Sbjct: 333 NLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG 392
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ YIH+KM Q+ RN+VFH+F
Sbjct: 393 YSCSYIHAKMLQDHRNRVFHDFRNG----------------------------------- 417
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 418 ------------ACRNLVCTDLFTRGIDIQAVNVVINFDF 445
>gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICASE DHH1 >gi|320822|pir||S31229
probable RNA helicase DHH1 - yeast (Saccharomyces
cerevisiae) >gi|4353|emb|CAA46853| (X66057) RNA-helicase
of the DEAD-BOX family [Saccharomyces cerevisiae]
>gi|1061279|emb|CAA91586| (Z67750) putative RNA helicase
[Saccharomyces cerevisiae] >gi|1431254|emb|CAA98734|
(Z74208) ORF YDL160c [Saccharomyces cerevisiae]
Length = 506
Score = 161 bits (403), Expect = 5e-39
Identities = 92/219 (42%), Positives = 124/219 (56%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
+ DEADKMLS +F I+ ++ L + L+SATFP VK+F+ ++H I
Sbjct: 193 IMDEADKMLSRDFKTIIEQILSFLPPTHQSL----LFSATFPLTVKEFMVKHLHKPYEIN 248
Query: 478 LMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGF 299
LM+EL+L GI Q+YA V+ ++KLHCL TL +K++ Q IIFCN+ N VELLA K+TD+G+
Sbjct: 249 LMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGY 308
Query: 298 PSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXXX 119
YY H++MKQ+ERNKVFH F + VRT
Sbjct: 309 SCYYSHARMKQQERNKVFHEFRQ------------GKVRT-------------------- 336
Query: 118 XXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
LVCSDL+TRGID + VN+VINF+F
Sbjct: 337 ---------------LVCSDLLTRGIDIQAVNVVINFDF 360
>gi|3386613 (AC004665) putative ATP-dependent RNA helicase [Arabidopsis
thaliana]
Length = 528
Score = 161 bits (402), Expect = 6e-39
Identities = 87/220 (39%), Positives = 126/220 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LSVEF +I+ LI+ L +++ + ++SATFP VK F Y+ I
Sbjct: 300 LVMDEADKLLSVEFQPSIEELIQFLPESRQ----ILMFSATFPVTVKSFKDRYLKKPYII 355
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM +L+L+G+ Q+YA V+ ++K+HCL TL +K++ Q IIFCN+VN VELLA K+T++G
Sbjct: 356 NLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG 415
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM Q+ RN+VFH+F
Sbjct: 416 YIHAKMVQDHRNRVFHDFRNG----------------------------------- 440
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 441 ------------ACRNLVCTDLFTRGIDIQAVNVVINFDF 468
>gi|1174456|sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE STE13 >gi|1076910|pir||S46654
probable RNA helicase - fission yeast
(Schizosaccharomyces pombe) >gi|703066|dbj|BAA06178|
(D29795) RNA helicase [Schizosaccharomyces pombe]
>gi|4176526|emb|CAA22882| (AL035263) putative
atp-dependent rna helicase ste13p [Schizosaccharomyces
pombe]
Length = 485
Score = 160 bits (400), Expect = 1e-38
Identities = 90/219 (41%), Positives = 124/219 (56%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEADK+LS EF I+ L+ N++ + LYSATFP +VK+F+ +++ I
Sbjct: 191 VMDEADKLLSPEFTPIIEQLLSYFPKNRQ----ISLYSATFPLIVKNFMDKHLNKPYEIN 246
Query: 478 LMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGF 299
LM EL+L G+ Q+YA VD +K+HCL TL +K++ Q IIFCN+ N VELLA K+T++G+
Sbjct: 247 LMDELTLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGY 306
Query: 298 PSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXXX 119
+Y H+KM Q RN+VFHNF +GV
Sbjct: 307YSHAKMLQSHRNRVFHNFR-------------NGV---------------------- 331
Query: 118 XXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVCSDL+TRGID + VN+VINF+F
Sbjct: 332 ------------CRNLVCSDLLTRGIDIQAVNVVINFDF 358
>gi|4493972|emb|CAB39031| (AL034559) predicted using hexExon; MAL3P7.12 (PFC0915w),
ATP-dependent RNA Helicase, len: 434 aa; Similarity to
ATP-dependent RNA helicase. A.thaliana ATP-dependent RNA
helicase (TR:O80838) BLAST Score: 1552, sum P(1) =
1.5e...
Length = 433
Score = 158 bits (396), Expect = 3e-38
Identities = 91/220 (41%), Positives = 125/220 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
MV DEADK+LS EF ++ L++ L KEK IL +YSATFP VK+F ++Y+ + I
Sbjct: 206 MVMDEADKLLSPEFQPIVEELMKFLP---KEKQIL-MYSATFPVTVKEFRAIYLSDAHEI 261
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM EL+L GI Q+YA V ++K+HCL TL K++ Q IIFCN++ VELLA K+T++G
Sbjct: 262 NLMDELTLKGITQYYAFVKERQKVHCLNTLFAKLQINQAIIFCNSITRVELLAKKITELG 321
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ S+YIH++M Q RN+VFH+F
Sbjct: 322 YSSFYIHARMSQTHRNRVFHDFRNG----------------------------------- 346
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LV SDL TRGID ++VN+VINF+F
Sbjct: 347 ------------ACRCLVSSDLFTRGIDIQSVNVVINFDF 374
>gi|3776001|emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis thaliana]
Length = 498
Score = 157 bits (394), Expect = 5e-38
Identities = 85/220 (38%), Positives = 123/220 (55%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS EF +++ LI+ L N++ ++SATFP VK F ++ I
Sbjct: 270 LVMDEADKLLSAEFQPSLEELIQFLPQNRQ----FLMFSATFPVTVKAFKDRHLRKPYVI 325
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM +L+L+G+ Q+YA V+ ++K+HCL TL +K++ Q IIFCN+VN VELLA K+T++G
Sbjct: 326 NLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG 385
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM Q+ RN+VFH F
Sbjct: 386 YIHAKMVQDHRNRVFHEFRNG----------------------------------- 410
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 411 ------------ACRNLVCTDLFTRGIDIQAVNVVINFDF 438
>gi|126938|sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE >gi|157594 (M59926) RNA
helicase [Drosophila melanogaster]
Length = 459
Score = 153 bits (383), Expect = 1e-36
Identities = 86/220 (39%), Positives = 124/220 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS++F + ++I L + K +I+L +SATFP VK+F+ ++ I
Sbjct: 204 LVLDEADKLLSLDFQGMLDHVI--LKLPKDPQILL--FSATFPLTVKNFMEKHLREPYEI 259
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM+EL+L G+ Q+YA V ++K+HCL TL +K++ Q IIFCN+ VELLA K+T++G
Sbjct: 260 NLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELG 319
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ YYIH+KM Q RN+VFH+F +
Sbjct: 320 YCCYYIHAKMAQAHRNRVFHDFRQGL---------------------------------- 345
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVCSDL TRGID + VN+VINF+F
Sbjct: 346 -------------CRNLVCSDLFTRGIDVQAVNVVINFDF 372
>gi|103314|pir||A39157 probable helicase (EC 3.6.1.-) - fruit fly (Drosophila
melanogaster) (fragment)
Length = 369
Score = 153 bits (383), Expect = 1e-36
Identities = 86/220 (39%), Positives = 124/220 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS++F + ++I L + K +I+L +SATFP VK+F+ ++ I
Sbjct: 142 LVLDEADKLLSLDFQGMLDHVI--LKLPKDPQILL--FSATFPLTVKNFMEKHLREPYEI 197
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM+EL+L G+ Q+YA V ++K+HCL TL +K++ Q IIFCN+ VELLA K+T++G
Sbjct: 198 NLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELG 257
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ YYIH+KM Q RN+VFH+F +
Sbjct: 258 YCCYYIHAKMAQAHRNRVFHDFRQGL---------------------------------- 283
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVCSDL TRGID + VN+VINF+F
Sbjct: 284 -------------CRNLVCSDLFTRGIDVQAVNVVINFDF 310
>gi|1709533|sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 >gi|1044938|emb|CAA63149| (X92421)
RNA helicase p54 [Xenopus laevis]
Length = 481
Score = 148 bits (369), Expect = 4e-35
Identities = 82/220 (37%), Positives = 123/220 (55%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS +F ++ +I L N++ + LYSATFP V+ F+++++ I
Sbjct: 242 IVLDEADKLLSQDFMQIMEDIIMTLPKNRQ----ILLYSATFPLSVQKFMTLHLQKPYEI 297
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM+EL+L G+ Q+YA V ++K+HCL TL ++++ Q IIFCN+ VELLA K++ +G
Sbjct: 298 NLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLG 357
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM+QE RN+VFH+F
Sbjct: 358 YIHAKMRQEHRNRVFHDFRNGL---------------------------------- 383
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 384 -------------CRNLVCTDLFTRGIDIQAVNVVINFDF 410
>gi|2745894|gb|AAB94769| (AF038995) putative RNA helicase RCK [Mus musculus]
Length = 453
Score = 146 bits (366), Expect = 1e-34
Identities = 82/220 (37%), Positives = 122/220 (55%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS +F ++ +I L N++ + LYSATFP V+ F++ ++ I
Sbjct: 218 IVLDEADKLLSQDFVQIMEDIILTLPKNRQ----ILLYSATFPLSVQKFMNSHLQKPYEI 273
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM+EL+L G+ Q+YA V ++K+HCL TL ++++ Q IIFCN+ VELLA K++ +G
Sbjct: 274 NLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLG 333
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM+QE RN+VFH+F
Sbjct: 334 YIHAKMRQEHRNRVFHDFENGL---------------------------------- 359
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 360 -------------CRNLVCTDLFTRGIDIQAVNVVINFDF 386
>gi|2136088|pir||I52691 RCK - human >gi|458727|dbj|BAA04482| (D17532) RCK [Homo sapiens]
Length = 472
Score = 146 bits (365), Expect = 1e-34
Identities = 82/220 (37%), Positives = 122/220 (55%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS +F ++ +I L N++ + LYSATFP V+ F++ ++ I
Sbjct: 232 IVLDEADKLLSQDFVQIMEDIILTLPKNRQ----ILLYSATFPLSVQKFMNSHLQKPYEI 287
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM+EL+L G+ Q+YA V ++K+HCL TL ++++ Q IIFCN+ VELLA K++ +G
Sbjct: 288 NLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLG 347
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM+QE RN+VFH+F
Sbjct: 348 YIHAKMRQEHRNRVFHDFRNGL---------------------------------- 373
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 374 -------------CRNLVCTDLFTRGIDIQAVNVVINFDF 400
>gi|1709532|sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT RNA HELICASE P54 (ONCOGENE RCK HOMOLOG)
(DEAD BOX PROTEIN 6) >gi|940408|dbj|BAA09088| (D50494)
RCK [Mus musculus]
Length = 483
Score = 146 bits (365), Expect = 1e-34
Identities = 82/220 (37%), Positives = 122/220 (55%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS +F ++ +I L N++ + LYSATFP V+ F++ ++ I
Sbjct: 243 IVLDEADKLLSQDFVQIMEDIILTLPKNRQ----ILLYSATFPLSVQKFMNSHLQKPYEI 298
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM+EL+L G+ Q+YA V ++K+HCL TL ++++ Q IIFCN+ VELLA K++ +G
Sbjct: 299 NLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLG 358
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM+QE RN+VFH+F
Sbjct: 359 YIHAKMRQEHRNRVFHDFRNGL---------------------------------- 384
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 385 -------------CRNLVCTDLFTRGIDIQAVNVVINFDF 411
>gi|129376|sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P54 (ONCOGENE RCK) (DEAD BOX
PROTEIN 6) >gi|106335|pir||S22651 hypothetical protein -
human
Length = 483
Score = 146 bits (365), Expect = 1e-34
Identities = 82/220 (37%), Positives = 122/220 (55%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADK+LS +F ++ +I L N++ + LYSATFP V+ F++ ++ I
Sbjct: 243 IVLDEADKLLSQDFVQIMEDIILTLPKNRQ----ILLYSATFPLSVQKFMNSHLEKPYEI 298
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
LM+EL+L G+ Q+YA V ++K+HCL TL ++++ Q IIFCN+ VELLA K++ +G
Sbjct: 299 NLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLG 358
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +YIH+KM+QE RN+VFH+F
Sbjct: 359 YIHAKMRQEHRNRVFHDFRNGL---------------------------------- 384
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C+ LVC+DL TRGID + VN+VINF+F
Sbjct: 385 -------------CRNLVCTDLFTRGIDIQAVNVVINFDF 411
>gi|2500523|sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|2190248|dbj|BAA20371|
(D84472) translation initiation factor [Candida
albicans]
Length = 397
Score = 85.4 bits (208), Expect = 3e-16
Identities = 66/218 (30%), Positives = 97/218 (44%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
+ DEAD+MLS F I + RLL E + L SAT P V + + +M+N I
Sbjct: 170 ILDEADEMLSSGFKEQIYNIFRLLP----ETTQIVLLSATMPQDVLEVTTKFMNNPVRIL 225
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V++++ K CL L + I Q +IFCN + VE L K+ +
Sbjct: 226 VKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQ 285
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F IH+ + Q ER+ + F
Sbjct: 286 HFTVSAIHADLPQAERDTIMKEFRSG---------------------------------- 311
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+IL+ +DL+ RGID + V+LVIN++
Sbjct: 312 -------------SSRILISTDLLARGIDVQQVSLVINYD 338
>gi|3775991|emb|CAA09198| (AJ010459) RNA helicase [Arabidopsis thaliana]
Length = 145
Score = 85.0 bits (207), Expect = 4e-16
Identities = 47/130 (36%), Positives = 65/130 (49%)
Query: 391 LNKIEFKQCIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQ 212
L +++ Q IIFCN+VN VELLA K+T++G+ +YIH+KM Q+ RN+VFH+F
Sbjct: 3 LLQLQINQSIIFCNSVNRVELLAKKITELGYIHAKMVQDHRNRVFHDFRNG----- 57
Query: 211 NNNNIVSGVRTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNK 32
C+ LVC+DL TRGID +
Sbjct: 58 ------------------------------------------ACRNLVCTDLFTRGIDIQ 75
Query: 31 NVNLVINFEF 2
VN+VINF+F
Sbjct: 76 AVNVVINFDF 85
>gi|124217|sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|283547|pir||S26281
translation initiation factor eIF-4A homolog -
Caenorhabditis elegans >gi|6700|emb|CAA78102| (Z12116)
unnamed protein product [Caenorhabditis elegans]
>gi|532818 (U13876) C. elegans eukaryotic initiation
factor 4a (EMBL:Z12116) [Caenorhabditis elegans]
Length = 402
Score = 83.1 bits (202), Expect = 2e-15
Identities = 67/218 (30%), Positives = 95/218 (42%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + R SM + +++L SAT PS V D + +M N I
Sbjct: 176 VLDEADEMLSRGFKDQIYEVFR--SMPQDVQVVL--LSATMPSEVLDVTNRFMRNPIRIL 231
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V E K CL L N + Q +IFCN V+ L K+T+
Sbjct: 232 VKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTEN 291
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q ER+ + F
Sbjct: 292 QFTVSCLHGDMDQAERDTIMREFRSG---------------------------------- 317
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +D++ RGID + V+LVIN++
Sbjct: 318 -------------SSRVLITTDILARGIDVQQVSLVINYD 344
>gi|124218|sp|P10081|IF4A_YEAST EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (STIMULATOR FACTOR I 37 KD
COMPONENT) (P37) >gi|72889|pir||FIBY1 translation
initiation factor eIF-4A - yeast (Saccharomyces
cerevisiae) >gi|4621|emb|CAA31301| (X12813) TIF1 gene
product (AA 1 - 395) [Saccharomyces cerevisiae]
>gi|4623|emb|CAA31302| (X12814) TIF2 gene product (AA 1
- 395) [Saccharomyces cerevisiae]
>gi|486521|emb|CAA82138| (Z28284) ORF YKR059w
[Saccharomyces cerevisiae] >gi|854559|emb|CAA60817|
(X87371) translation initiation factor [Saccharomyces
cerevisiae] >gi|1015544|emb|CAA89433| (Z49413) ORF
YJL138c [Saccharomyces cerevisiae]
Length = 395
Score = 80.0 bits (194), Expect = 1e-14
Identities = 65/218 (29%), Positives = 95/218 (42%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
+ DEAD+MLS F I + LL + + L SAT P+ V + + +M N I
Sbjct: 168 ILDEADEMLSSGFKEQIYQIFTLLPPTTQ----VVLLSATMPNDVLEVTTKFMRNPVRIL 223
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E K CL L + I Q +IFCN VE L K+ +
Sbjct: 224 VKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND 283
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F I+S + Q+ER+ + F
Sbjct: 284 KFTVSAIYSDLPQQERDTIMKEFRSG---------------------------------- 309
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+IL+ +DL+ RGID + V+LVIN++
Sbjct: 310 -------------SSRILISTDLLARGIDVQQVSLVINYD 336
>gi|3002483|gb|AAC24685| (AE001274) EIF-4A; L3162.6 [Leishmania major]
>gi|3002484|gb|AAC24684.1| (AE001274) EIF-4A; L3162.5
[Leishmania major]
Length = 403
Score = 78.4 bits (190), Expect = 4e-14
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+MLS F I + R L + I + L+SAT P V + +M + I
Sbjct: 175 LVLDEADEMLSQGFADQIYEIFRFLPKD----IQVALFSATMPEEVLELTKKFMRDPVRI 230
Query: 481 XLMKE-LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ +E L+L GI QF+ V+ + KL L L + Q +IF N V+ +A K+
Sbjct: 231 LVKRESLTLEGIKQFFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQS 290
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
+H++M + +R +V + F
Sbjct: 291 NHTVSSMHAEMPKSDRERVMNTFRSG---------------------------------- 316
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++LV +DLV RGID +VN+VINF+
Sbjct: 317 -------------SSRVLVTTDLVARGIDVHHVNIVINFD 343
>gi|2500514|sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|643070
(U19888) ribosomal DEAD box protein [Leishmania
braziliensis]
Length = 403
Score = 78.4 bits (190), Expect = 4e-14
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+MLS F I + R L + I + L+SAT P V + +M + I
Sbjct: 175 LVLDEADEMLSQGFADQIYEIFRFLPKD----IQVALFSATMPEEVLELTKKFMRDPVRI 230
Query: 481 XLMKE-LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ +E L+L GI QF+ V+ + KL L L + Q +IF N V+ +A K+
Sbjct: 231 LVKRESLTLEGIKQFFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQS 290
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
+H++M + +R +V + F
Sbjct: 291 NHTVSSMHAEMPKSDRERVMNTFRSG---------------------------------- 316
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++LV +DLV RGID +VN+VINF+
Sbjct: 317 -------------SSRVLVTTDLVARGIDVHHVNIVINFD 343
>gi|1708418|sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|1321961|emb|CAA56772|
(X80796) translation initiation factor eIF-4A
[Schizosaccharomyces pombe] >gi|2222814 (L40627) cell
cycle control protein eIF-4A [Schizosaccharomyces pombe]
Length = 392
Score = 76.1 bits (184), Expect = 2e-13
Identities = 65/218 (29%), Positives = 96/218 (43%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL + + L SAT P V + + +M + I
Sbjct: 166 VLDEADEMLSRGFKDQIYDIFQLLPPTAQ----VVLLSATMPQDVLEVTTKFMRDPIRIL 221
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IFCN V+ L ++T+
Sbjct: 222 VKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTER 281
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q +R+ + H F RT
Sbjct: 282 DFTVSSMHGDMDQAQRDTLMHEF-----------------RTGSS--------------- 309
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+IL+ +DL+ RGID + V+LVIN++
Sbjct: 310 ---------------RILITTDLLARGIDVQQVSLVINYD 334
>gi|3776005|emb|CAA09205| (AJ010466) RNA helicase [Arabidopsis thaliana]
Length = 451
Score = 74.5 bits (180), Expect = 6e-13
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 3/218 (1%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML S++ +++ + ++ +K+ + ++SAT ++ +M + I
Sbjct: 219 ILDECDKMLESLDMRRDVQEIFKMTPHDKQ----VMMFSATLSKEIRPVCKKFMQDPMEI 274
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q Y + EK L LL+ ++F Q +IF +V+ + L +
Sbjct: 275 YVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRADELNKLLVG 334
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FPS IHS M QEER + +F E +K
Sbjct: 335 CHFPSICIHSGMSQEERLTRYKSFKEGHK------------------------------- 363
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV +DLV RGID + VN+VIN++
Sbjct: 364 ----------------RILVATDLVGRGIDIERVNIVINYD 388
>gi|2500533|sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG
>gi|3874509|emb|CAA91120| (Z54327) similar to
translation initiation factor eIF-4A; cDNA EST
EMBL:Z14797 comes from this gene; cDNA EST EMBL:T01553
comes from this gene; cDNA EST EMBL:T00043 comes from
this gene; cDNA EST CEESF23F comes from this gene; ...
Length = 425
Score = 72.2 bits (174), Expect = 3e-12
Identities = 56/218 (25%), Positives = 93/218 (41%), Gaps = 3/218 (1%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNIC-- 488
V DE DKM+ + +++ ++++ K+ + ++SAT P ++ +M +
Sbjct: 190 VLDECDKMIGDADMRRDVQEIVKMTPQQKQ----VMMFSATLPKELRTVCKRFMQDPMEV 245
Query: 487 YIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
Y+ +L+L G+ Q Y + EK L LL+ +EF Q +IF V E L +T+
Sbjct: 246 YVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTE 305
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FPS IH +M QEER + F + K
Sbjct: 306 QNFPSIAIHRQMAQEERLSRYQAFKDFQK------------------------------- 334
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV +DL RG+D + VN+V N++
Sbjct: 335 ----------------RILVATDLFGRGMDIERVNIVFNYD 359
>gi|4490565|emb|CAB38640| (Y17288) RNA helicase [Plasmodium falciparum]
Length = 182
Score = 71.4 bits (172), Expect = 6e-12
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L + I + L+SAT P + + + +M + I
Sbjct: 1 VLDEADEMLSRGFKAQIYEVFKKLVPD----IQVALFSATMPQEILELTTRFMRDPKTIL 56
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q II+CN V++L ++ +
Sbjct: 57 VKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNR 116
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q++R+ + F
Sbjct: 117 LFTVSCMHGDMDQKDRDLIMREFRSG---------------------------------- 142
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++LV +DL+ RGID + V+LVIN++
Sbjct: 143 -------------STRVLVTTDLLARGIDVQQVSLVINYD 169
>gi|1177010|sp|P42305|YXIN_BACSU PROBABLE RNA HELICASE IN WAPA-LICT INTERGENIC REGION
>gi|665989|dbj|BAA11693| (D83026) homologous to ATP
dependent RNA helicase DeaD of E. coli; hypothetical
[Bacillus subtilis] >gi|2636457|emb|CAB15947| (Z99124)
ATP-dependent RNA helicase [Bacillus subtilis]
Length = 479
Score = 70.6 bits (170), Expect = 9e-12
Identities = 59/219 (26%), Positives = 94/219 (41%), Gaps = 3/219 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML++ F ++ +I+ L + L+SAT P ++ YM N +I
Sbjct: 148 LVIDEADEMLNMGFIEQVEAIIKHLPTERTTM----LFSATLPQDIEKLSRQYMQNPEHI 203
Query: 481 XLMKELSLIGIYQFYALVDIKE--KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ K L +A++ ++E K LK +L CIIFC +V L ++ D
Sbjct: 204 EV-KAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDD 262
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE-SYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXX 131
+G+P IH M QE+R V + F Y+Y
Sbjct: 263 LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRY----------------------------- 293
Query: 130 XXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
LV +D+ RGID +N++LVIN++
Sbjct: 294 -------------------LVATDVAARGIDIENISLVINYD 316
>gi|2370591|emb|CAA73167| (Y12590) translation initiation factor eIF4A I [Xenopus laevis]
Length = 406
Score = 69.9 bits (168), Expect = 2e-11
Identities = 62/218 (28%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + LS N + + L SAT P+ V + +M + I
Sbjct: 180 VLDEADEMLSRGFKDQIYDIFQKLSSNAQ----VVLLSATMPADVLEVTKKFMRDPIRIL 235
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 236 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 295
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 296 DFTVSALHGDMDQKERDVIMREFRSG---------------------------------- 321
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 322 -------------SSRVLITTDLLARGIDVQQVSLVINYD 348
>gi|1352438|sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A-LIKE PROTEIN C1F5.10
>gi|1103737|emb|CAA92238| (Z68136) unknown
[Schizosaccharomyces pombe]
Length = 394
Score = 69.9 bits (168), Expect = 2e-11
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DEAD++L+ F I + R L + ++ SAT P V + + + N I
Sbjct: 167 LILDEADELLNQGFKEQIYDIYRYLPPGTQVVVV----SATLPQDVLEMTNKFTTNPVRI 222
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + EL+L G+ Q++ V+ +E K L L + + Q +IFCN+ V+ L K+ +
Sbjct: 223 LVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
F +H +M Q+ER+ + +F Q N+
Sbjct: 283 ANFTVTSMHGEMPQKERDAIMQDF------RQGNS------------------------- 311
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+C+D+ RGID + V+LVIN++
Sbjct: 312 ----------------RVLICTDIWARGIDVQQVSLVINYD 336
>gi|90965|pir||S00986 translation initiation factor eIF-4A I - mouse
Length = 407
Score = 69.5 bits (167), Expect = 2e-11
Identities = 62/218 (28%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ N + + L SAT PS V + +M + I
Sbjct: 181 VLDEADEMLSRGFKDQIYDIFQKLNSNTQ----VVLLSATMPSDVLEVTKKFMRDPIRIL 236
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 237 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 296
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 297 DFTVSAMHGDMDQKERDVIMREFRSG---------------------------------- 322
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 323 -------------SSRVLITTDLLARGIDVQQVSLVINYD 349
>gi|72888|pir||FIMS4A translation initiation factor eIF-4A - mouse
>gi|50814|emb|CAA26842| (X03039) put. eIF-4A (aa 1-390)
[Mus musculus] >gi|50819|emb|CAA26845| (X03040) put.
eIF-4A (aa 1-390) [Mus musculus]
Length = 390
Score = 69.5 bits (167), Expect = 2e-11
Identities = 62/218 (28%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ N + + L SAT PS V + +M + I
Sbjct: 164 VLDEADEMLSRGFKDQIYDIFQKLNSNTQ----VVLLSATMPSDVLEVTKKFMRDPIRIL 219
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 220 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 279
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 280 DFTVSAMHGDMDQKERDVIMREFRSG---------------------------------- 305
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 306 -------------SSRVLITTDLLARGIDVQQVSLVINYD 332
>gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I) >gi|422959|pir||S33681
translation initiation factor eIF-4A.I - human
>gi|219403|dbj|BAA02897| (D13748) eukaryotic initiation
factor 4AI [Homo sapiens] >gi|2943740|dbj|BAA25075|
(AB011595) eIF4A [Mus musculus] >gi|227238|prf||1617105B
initiation factor 4AI [Oryctolagus cuniculus]
>gi|4503529|ref|NP_001407.1|pEIF4A1| eukaryotic
translation initiation factor 4A, isoform 1
Length = 406
Score = 69.5 bits (167), Expect = 2e-11
Identities = 62/218 (28%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ N + + L SAT PS V + +M + I
Sbjct: 180 VLDEADEMLSRGFKDQIYDIFQKLNSNTQ----VVLLSATMPSDVLEVTKKFMRDPIRIL 235
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 236 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 295
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 296 DFTVSAMHGDMDQKERDVIMREFRSG---------------------------------- 321
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 322 -------------SSRVLITTDLLARGIDVQQVSLVINYD 348
>gi|50815|emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) [Mus musculus]
>gi|50820|emb|CAA26846| (X03040) put. altern. eIF-4A (aa
1-370) [Mus musculus]
Length = 370
Score = 69.5 bits (167), Expect = 2e-11
Identities = 62/218 (28%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ N + + L SAT PS V + +M + I
Sbjct: 144 VLDEADEMLSRGFKDQIYDIFQKLNSNTQ----VVLLSATMPSDVLEVTKKFMRDPIRIL 199
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 200 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 259
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 260 DFTVSAMHGDMDQKERDVIMREFRSG---------------------------------- 285
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 286 -------------SSRVLITTDLLARGIDVQQVSLVINYD 312
>gi|90964|pir||JS0039 translation initiation factor eIF-4A - mouse >gi|556308 (L36611)
protein synthesis initiation factor 4A [Mus musculus]
Length = 406
Score = 69.5 bits (167), Expect = 2e-11
Identities = 62/218 (28%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ N + + L SAT PS V + +M + I
Sbjct: 180 VLDEADEMLSRGFKDQIYDIFQKLNSNTQ----VVLLSATMPSDVLEVTKKFMRDPIRIL 235
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 236 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 295
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 296 DFTVCAMHGDMDQKERDVIMREFRSG---------------------------------- 321
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 322 -------------SSRVLITTDLLARGIDVQQVSLVINYD 348
>gi|266336|sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I) >gi|109295|pir||S13269
initiation factor eIF-4A - rabbit
Length = 394
Score = 69.5 bits (167), Expect = 2e-11
Identities = 62/218 (28%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ N + + L SAT PS V + +M + I
Sbjct: 168 VLDEADEMLSRGFKDQIYDIFQKLNSNTQ----VVLLSATMPSDVLEVTKKFMRDPIRIL 223
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 224 VKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 283
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 284 DFTVSAMHGDMDQKERDVIMREFRSG---------------------------------- 309
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 310 -------------SSRVLITTDLLARGIDVQQVSLVINYD 336
>gi|2408027|emb|CAB16225| (Z99162) atp-dependent rna helicase [Schizosaccharomyces pombe]
Length = 434
Score = 69.1 bits (166), Expect = 3e-11
Identities = 58/218 (26%), Positives = 94/218 (42%), Gaps = 3/218 (1%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DE DK+L SV+ +I+ + R K+ + ++SAT + ++ +M N I
Sbjct: 202 VLDECDKLLESVDMRRDIQEVFRATPPQKQ----VMMFSATLSNEIRPICKKFMQNPLEI 257
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q Y ++ K K + LL+ +EF Q +IF +V+ L + +
Sbjct: 258 YVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRE 317
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FPS IH + QEER K + F + K
Sbjct: 318 CNFPSICIHGGLPQEERIKRYKAFKDFDK------------------------------- 346
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+I V +D+ RGID + VN+VIN++
Sbjct: 347 ----------------RICVATDVFGRGIDIERVNIVINYD 371
>gi|1749748|dbj|BAA13931| (D89270) similar to Saccharomyces cerevisiae eukaryotic initiation
factor 4A (EIF-4), SWISS-PROT Accession Number P10081
[Schizosaccharomyces pombe]
Length = 339
Score = 69.1 bits (166), Expect = 3e-11
Identities = 58/218 (26%), Positives = 94/218 (42%), Gaps = 3/218 (1%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DE DK+L SV+ +I+ + R K+ + ++SAT + ++ +M N I
Sbjct: 107 VLDECDKLLESVDMRRDIQEVFRATPPQKQ----VMMFSATLSNEIRPICKKFMQNPLEI 162
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q Y ++ K K + LL+ +EF Q +IF +V+ L + +
Sbjct: 163 YVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRE 222
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FPS IH + QEER K + F + K
Sbjct: 223 CNFPSICIHGGLPQEERIKRYKAFKDFDK------------------------------- 251
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+I V +D+ RGID + VN+VIN++
Sbjct: 252 ----------------RICVATDVFGRGIDIERVNIVINYD 276
>gi|2370593|emb|CAA73168| (Y12591) translation initiation factor eIF4A II [Xenopus laevis]
Length = 413
Score = 69.1 bits (166), Expect = 3e-11
Identities = 63/218 (28%), Positives = 94/218 (42%), Gaps = 3/218 (1%)
Query: 658 VFDEADKMLSVEFXXNIKYLI-RLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DEAD+MLS F I + ++LSMN + + L SAT P+ V + +M + I
Sbjct: 186 VLDEADEMLSRGFKDQIYDIFQKVLSMNAQ----VVLLSATMPADVLEVTKKFMRDPIRI 241
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 242 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 301
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
F +H M Q+ER+ + F
Sbjct: 302 RDFTVSALHGDMDQKERDVIMREFRSG--------------------------------- 328
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 --------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2500524|sp|Q12099|FAL1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE FAL1 >gi|1078511|pir||S54644
hypothetical protein YDR021w - yeast (Saccharomyces
cerevisiae) >gi|840874|emb|CAA89846| (Z49770) unknown
[Saccharomyces cerevisiae] >gi|1216228|emb|CAA65213|
(X95966) orf:PZC399 [Saccharomyces cerevisiae]
>gi|1431450|emb|CAA98842| (Z74317) ORF YDR021w
[Saccharomyces cerevisiae]
Length = 399
Score = 68.7 bits (165), Expect = 4e-11
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 4/219 (1%)
Query: 661 MVFDEADKMLS--VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNIC 488
+V DEAD++LS + F I + L N + ++ SAT + + +M++
Sbjct: 170 LVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV----SATMNKDILEVTRKFMNDPV 225
Query: 487 YIXLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
I + + E+SL GI Q+ VD +E K L + + + QC+IFCN V+ L+ ++
Sbjct: 226 KILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRL 285
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
F +H MKQEER+KV ++F +
Sbjct: 286 IQSNFAVVSMHGDMKQEERDKVMNDFRTGHS----------------------------- 316
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +D+ RGID + V+LVIN++
Sbjct: 317 ------------------RVLISTDVWARGIDVQQVSLVINYD 341
>gi|2507330|sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II)
>gi|90966|pir||S00985 translation initiation factor
eIF-4A II - mouse >gi|673434|emb|CAA40269| (X56953)
protein synthesis initiation factor 4A [Mus musculus]
>gi|227239|prf||1617105C initiation factor 4AII
[Oryctolagus cuniculus]
Length = 407
Score = 67.5 bits (162), Expect = 8e-11
Identities = 61/218 (27%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ + I + L SAT P+ V + +M + I
Sbjct: 181 VLDEADEMLSRGFKDQIYEIFQKLNTS----IQVVLLSATMPTDVLEVTKKFMRDPIRIL 236
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 237 VKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHAR 296
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 297 DFTVSALHGDMDQKERDVIMREFRSG---------------------------------- 322
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 323 -------------SSRVLITTDLLARGIDVQQVSLVINYD 349
>gi|50823|emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - 407) [Mus musculus]
Length = 407
Score = 67.5 bits (162), Expect = 8e-11
Identities = 61/218 (27%), Positives = 93/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I ++ L+ + I + L SAT P+ V + +M + I
Sbjct: 181 VLDEADEMLSRGFKDQIYERVQKLNTS----IQVVLLSATMPTDVLEVTKKFMRDPIRIL 236
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+ +
Sbjct: 237 VKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMQAI 296
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 297 YFTVSALHGDMDQKERDVIMREFRSG---------------------------------- 322
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 323 -------------SSRVLITTDLLARGIDVQQVSLVINYD 349
>gi|673433|emb|CAA40268| (X56953) protein synthesis initiation factor 4A [Mus musculus]
Length = 408
Score = 67.5 bits (162), Expect = 8e-11
Identities = 61/218 (27%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ + I + L SAT P+ V + +M + I
Sbjct: 182 VLDEADEMLSRGFKDQIYEIFQKLNTS----IQVVLLSATMPTDVLEVTKKFMRDPIRIL 237
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 238 VKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHAR 297
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 298 DFTVSALHGDMDQKERDVIMREFRSG---------------------------------- 323
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 324 -------------SSRVLITTDLLARGIDVQQVSLVINYD 350
>gi|2500540|sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669 >gi|2127878|pir||E64383
eIF-4A family probable ATP-dependent RNA helicase
homolog - Methanococcus jannaschii >gi|1591383 (U67514)
ATP-dependent RNA helicase, DEAD-family (deaD)
[Methanococcus jannaschii]
Length = 367
Score = 67.1 bits (161), Expect = 1e-10
Identities = 58/217 (26%), Positives = 93/217 (42%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
+ DEAD+ML++ F IK + ++L+ K+K IL L+SAT P + + YM + +I
Sbjct: 152 ILDEADEMLNMGF---IKDVEKILNACNKDKRIL-LFSATMPREILNLAKKYMGDYSFI- 206
Query: 478 LMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGF 299
K I Q Y V+ E+ L LL EF ++FC + + LA + D+GF
Sbjct: 207 --KAKINANIEQSYVEVNENERFEALCRLLKNKEFYG-LVFCKTKRDTKELASMLRDIGF 263
Query: 298 PSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXXX 119
+ IH + Q +R KV F +
Sbjct: 264 KAGAIHGDLSQSQREKVIRLFKQK------------------------------------ 287
Query: 118 XXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINF 8
+IL+ +D+++RGID ++N VIN+
Sbjct: 288 -----------KIRILIATDVMSRGIDVNDLNCVINY 313
>gi|1688326 (U78759) IfdA [Dictyostelium discoideum]
Length = 395
Score = 67.1 bits (161), Expect = 1e-10
Identities = 60/216 (27%), Positives = 88/216 (39%), Gaps = 2/216 (0%)
Query: 652 DEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIXLM 473
DEAD+MLS F I + R L + I + L+SAT S +M N I +
Sbjct: 173 DEADEMLSRGFKDQIYEIFRFLP----KTIQVGLFSATMTDETLGITSKFMQNPVSILVK 228
Query: 472 K-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGF 299
K EL+L GI QFY V +++ K L L + Q +IFCN V+ L K+T+ F
Sbjct: 229 KDELTLEGIRQFYVNVGVEQGKFEVLTDLYETLSITQSVIFCNTRRKVDWLTSKMTEQKF 288
Query: 298 PSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXXX 119
H Q++R+ + F
Sbjct: 289 TVSSTHG--DQKDRDGILQAFRSG------------------------------------ 310
Query: 118 XXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVINF+
Sbjct: 311 -----------ATRVLITTDLLARGIDVQQVSLVINFD 337
>gi|2150025 (AF001211) translation initiation factor [Cryptosporidium parvum]
>gi|2155304 (AF001378) translation initiation factor
[Cryptosporidium parvum]
Length = 405
Score = 67.1 bits (161), Expect = 1e-10
Identities = 55/218 (25%), Positives = 92/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
+ DEAD+MLS F I + + L + + + L+SAT P+ + + +M + I
Sbjct: 178 ILDEADEMLSRGFKVQIHDIFKKL----PQDVQVALFSATMPNEILHLTTQFMRDPKRIL 233
Query: 478 L-MKELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ +EL+L GI QFY V+ E K+ L L + Q II+CN V+ L ++ +
Sbjct: 234 VKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTIVQAIIYCNTRRRVDQLTKQMRER 293
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q++R + F
Sbjct: 294 DFTCSSMHGDMDQKDREVIMRQFRSG---------------------------------- 319
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 320 -------------SSRVLITTDLLARGIDVQQVSLVINYD 346
>gi|2773184 (AF039720) similar to the "DEAD" box family of helicases; most
similar to eukaryotic initiation factor 4A
[Caenorhabditis elegans]
Length = 399
Score = 66.7 bits (160), Expect = 1e-10
Identities = 45/142 (31%), Positives = 74/142 (51%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML+ F + + R L + + L SAT P + + S +M + I
Sbjct: 172 LVLDEADEMLNKGFKEQLYDIYRYLPPGAQ----VVLLSATLPHEILEMTSKFMTDPIRI 227
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + EL+L GI QF+ VD +E K L L + + Q ++FCN V+ L K+ +
Sbjct: 228 LVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKE 287
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
F +H M+Q++R++V F
Sbjct: 288 ANFTVSSMHGDMEQKDRDEVMKEF 311
>gi|532817 (U13876) highly similar to eukaryotic initiation factor 4a (EIF-4A)
[Caenorhabditis elegans]
Length = 363
Score = 66.3 bits (159), Expect = 2e-10
Identities = 51/142 (35%), Positives = 71/142 (49%), Gaps = 2/142 (1%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + R SM + +++L SAT PS V D + +M + I
Sbjct: 135 VLDEADEMLSKGFKDQIYEVFR--SMPQDVQVVL--LSATMPSEVLDVTNRFMRDPIRIL 190
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V E K +CL LL Q +IFCN V L ++ +
Sbjct: 191 VKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQALIFCNTRRRVTQLTEQLMSI 250
Query: 304 GFPSYYIHSKMKQEERNKVFHNFS 233
H M+ ER + +F+
Sbjct: 251 PIKHGNMEHNEREDMVKDFN 274
>gi|1170507|sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A-3 (EIF-4A-3) >gi|100276|pir||S22579
translation initiation factor eIF-4A - curled-leaved
tobacco >gi|19699|emb|CAA43514| (X61206) nicotiana
eukaryotic translation initiation factor 4A [Nicotiana
plumbaginifolia]
Length = 391
Score = 66.3 bits (159), Expect = 2e-10
Identities = 45/142 (31%), Positives = 74/142 (51%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DE+D+MLS F I + R L ++ + L SAT P+ + + S +M + I
Sbjct: 164 LILDESDEMLSRGFKDQIYDVYRYLP----PELQVVLISATLPNEILEITSKFMTDPVRI 219
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + EL+L GI QF+ V+ +E K L L + + Q +IFCN V+ L K+ +
Sbjct: 220 LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRE 279
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
F +H M Q+ER+ + F
Sbjct: 280 NNFTVSSMHGDMPQKERDAIMAEF 303
>gi|476338 (U08102) putative RNA helicase [Caenorhabditis elegans]
Length = 417
Score = 66.0 bits (158), Expect = 2e-10
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 3/218 (1%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNIC-- 488
V DE DKM+ + +++ + +++ ++SAT P ++ +M +
Sbjct: 189 VLDECDKMIGDADMRRDVQEIKQVM-----------MFSATLPKELRTVCKRFMQDPMEV 237
Query: 487 YIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
Y+ +L+L G+ Q Y + EK L LL+ +EF Q +IF V E L +T+
Sbjct: 238 YVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTE 297
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FPS IH +M QEER + F + K
Sbjct: 298 QNFPSIAIHRQMAQEERLSRYQAFKDFQK------------------------------- 326
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV +DL RG+D + VN+V N++
Sbjct: 327 ----------------RILVATDLFGRGMDIERVNIVFNYD 351
>gi|462401|sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|418925|pir||S30278
translation initiation factor eIF-4A - fruit fly
(Drosophila melanogaster) >gi|311997|emb|CAA48790|
(X69045) eukaryotic translation initiation factor 4A
(eIF-4A) [Drosophila melanogaster]
Length = 402
Score = 66.0 bits (158), Expect = 2e-10
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 4/218 (1%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I+ + ++L + + + L SAT P V + +M + I
Sbjct: 176 VLDEADEMLSRGFKDQIQDVFKMLPPD----VQVILLSATMPPDVLEVSRCFMRDPVSIL 231
Query: 478 LMKE-LSLIGIYQFYALVDIKE---KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
+ KE L+L GI QFY V++K+ KL L L + + Q +IFCN V+ L +++
Sbjct: 232 VKKEELTLEGIKQFY--VNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMS 289
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXX 131
F +H M+Q +R + F
Sbjct: 290 IHNFTVSAMHGDMEQRDREVIMKQFRSG-------------------------------- 317
Query: 130 XXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 318 ---------------SSRVLITTDLLARGIDVQQVSLVINYD 344
>gi|2500513|sp|Q14240|IF42_HUMAN EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II)
>gi|485388|dbj|BAA06336| (D30655) eukaryotic initiation
factor 4AII [Homo sapiens] >gi|1195610|bbs|172671
(S79942) protein synthesis initiation factor 4A-II
homolog=EIF4A2 [human, fetal lung tissue, Peptide, 407
aa] [Homo sapiens] >gi|4503531|ref|NP_001958.1|pEIF4A2|
eukaryotic translation initiation factor 4A, isoform 2
Length = 407
Score = 65.6 bits (157), Expect = 3e-10
Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + + L+ + I + SAT P+ V + +M + I
Sbjct: 181 VLDEADEMLSRGFKDQIYEIFQKLNTS----IQVVFASATMPTDVLEVTKKFMRDPIRIL 236
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 237 VKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHAR 296
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
F +H M Q+ER+ + F
Sbjct: 297 DFTVSALHGDMDQKERDVIMREFRSG---------------------------------- 322
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 323 -------------SSRVLITTDLLARGIDVQQVSLVINYD 349
>gi|3775985|emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis thaliana]
Length = 391
Score = 65.6 bits (157), Expect = 3e-10
Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DE+D+MLS F I + R L + + ++ SAT P + + S +M I
Sbjct: 164 LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLV----SATLPHEILEMTSKFMTEPVKI 219
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + EL+L GI QF+ V+ +E K L L + + Q +IFCN V+ L+ K+
Sbjct: 220 LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRS 279
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
F +H M Q+ER+ + + F
Sbjct: 280 HNFTVSSMHGDMPQKERDAIMNEFRSG--------------------------------- 306
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +D+ RGID + V+LVIN++
Sbjct: 307 --------------DSRVLITTDVWARGIDVQQVSLVINYD 333
>gi|729821|sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-LIKE NUK-34 (HA0659)
>gi|631472|pir||S45142 translation initiation factor
eIF-4A2 homolog - human >gi|496902|emb|CAA56074|
(X79538) translation initiation factor [Homo sapiens]
Length = 411
Score = 64.8 bits (155), Expect = 5e-10
Identities = 45/142 (31%), Positives = 71/142 (49%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML+ F I + R L + +I SAT P + + + +M + I
Sbjct: 184 LVLDEADEMLNKGFKEQIYDVYRYLPSATQVVLI----SATLPHEILEMTNKFMTDPIRI 239
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + EL+L GI QF+ V+ +E K L L + + Q +IFCN V+ L K+ +
Sbjct: 240 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE 299
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
F +H M Q+ER + F
Sbjct: 300 ANFTVSSMHGDMPQKERESIMKEF 323
>gi|1905998 (U90426) nuclear RNA helicase [Homo sapiens]
Length = 427
Score = 64.4 bits (154), Expect = 7e-10
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 3/218 (1%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DE DKML ++ +++ + RL K+ ++SAT ++ +M + +
Sbjct: 193 VLDECDKMLEQLDMRRDVQEIFRLTPHEKQ----CMMFSATLSKDIRPVCRKFMQDPMEV 248
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q IIF +V LA + +
Sbjct: 249 FVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVE 308
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FP+ IH M QEER + F + +
Sbjct: 309 QNFPAIAIHRGMAQEERLSRYQQFKDFQR------------------------------- 337
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV ++L RG+D + VN+V N++
Sbjct: 338 ----------------RILVATNLFGRGMDIERVNIVFNYD 362
>gi|2500530|sp|Q29024|HE47_PIG PROBABLE ATP-DEPENDENT RNA HELICASE P47 >gi|2136589|pir||I47126
nuclear RNA helicase (DEAD family) BAT1 - pig
>gi|509403|emb|CAA84355| (Z34846) BAT1 [Sus scrofa]
Length = 427
Score = 64.4 bits (154), Expect = 7e-10
Identities = 45/143 (31%), Positives = 73/143 (50%), Gaps = 3/143 (2%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML ++ +++ + R M EK ++ ++SAT V+ +M + I
Sbjct: 193 ILDECDKMLEQLDMRRDVQEIFR---MTPHEKQVM-MFSATLSKEVRPVCRKFMQDPMEI 248
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 249 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 308
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
FP+ IH M QEER + F +
Sbjct: 309 QNFPAIAIHRGMPQEERLSRYQQFKD 334
>gi|3132829 (AF063447) nuclear RNA helicase [Rattus norvegicus]
Length = 427
Score = 64.4 bits (154), Expect = 7e-10
Identities = 54/218 (24%), Positives = 91/218 (40%), Gaps = 3/218 (1%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DE DKML ++ +++ + RL K+ ++SAT ++ +M + +
Sbjct: 193 VLDECDKMLEQLDMRRDVQEIFRLTPHEKQ----CMMFSATLSKEIRPVCRKFMQDPMEV 248
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 249 FVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVE 308
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FP+ IH M QEER + F + +
Sbjct: 309 QNFPAIAIHRGMAQEERLSRYQQFKDFQR------------------------------- 337
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV ++L RG+D + VN+V N++
Sbjct: 338 ----------------RILVATNLFGRGMDIERVNIVFNYD 362
>gi|2104219|dbj|BAA04879| (D21853) KIAA0111 [Homo sapiens]
Length = 411
Score = 64.4 bits (154), Expect = 7e-10
Identities = 45/142 (31%), Positives = 71/142 (49%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML+ F I + R L + +I SAT P + + + +M + I
Sbjct: 184 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI----SATLPHEILEMTNKFMTDPIRI 239
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + EL+L GI QF+ V+ +E K L L + + Q +IFCN V+ L K+ +
Sbjct: 240 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE 299
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
F +H M Q+ER + F
Sbjct: 300 ANFTVSSMHGDMPQKERESIMKEF 323
>gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase [Plasmodium
falciparum]
Length = 457
Score = 64.4 bits (154), Expect = 7e-10
Identities = 56/218 (25%), Positives = 94/218 (42%), Gaps = 3/218 (1%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DE DK L ++ +++ + +S K++++ +SAT ++D ++ N I
Sbjct: 225 VLDECDKCLEKLDMRSDVQKIF--ISTPLKKQVMF--FSATMAKEMRDVCKKFLQNPVEI 280
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L L G+ Q Y + K+K L +L+ +EF Q IIF +V L +T+
Sbjct: 281 FIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTE 340
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FPS IH ++Q+ER + + F +
Sbjct: 341 CNFPSIAIHGGLEQQERIERYDKFKKFEN------------------------------- 369
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV +DL RGID + VN+VIN++
Sbjct: 370 ----------------RILVSTDLFGRGIDIERVNIVINYD 394
>gi|2500521|sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15 (EIF-4A-15)
>gi|485945|emb|CAA55739| (X79138) NeIF-4A15 [Nicotiana
tabacum]
Length = 413
Score = 64.4 bits (154), Expect = 7e-10
Identities = 60/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVINF+
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINFD 355
>gi|3776021|emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis thaliana]
Length = 441
Score = 64.4 bits (154), Expect = 7e-10
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL K+ + ++SAT P + +M+ I
Sbjct: 215 VLDEADEMLSRGFKDQIYDIFQLL----PSKVQVGVFSATMPPEALEITRKFMNKPVRIL 270
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 271 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 330
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 331 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 356
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVINF+
Sbjct: 357 -------------SSRVLITTDLLARGIDVQQVSLVINFD 383
>gi|2500529|sp|Q13838|HE47_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P47 >gi|2135840|pir||I37201
nuclear RNA helicase (DEAD family) BAT1 - human
>gi|587146|emb|CAA85523| (Z37166) nuclear RNA helicase
(DEAD family) [Homo sapiens]
Length = 428
Score = 64.0 bits (153), Expect = 9e-10
Identities = 44/143 (30%), Positives = 73/143 (50%), Gaps = 3/143 (2%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML ++ +++ + R M EK ++ ++SAT ++ +M + I
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFR---MTPHEKQVM-MFSATLSKEIRPVCRKFMQDPMEI 249
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 250 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 309
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
FP+ IH M QEER + F +
Sbjct: 310 QNFPAIAIHRGMPQEERLSRYQQFKD 335
>gi|4235116 (AF118128) nuclear RNA helicase Bat1 [Mus musculus]
Length = 428
Score = 64.0 bits (153), Expect = 9e-10
Identities = 44/143 (30%), Positives = 73/143 (50%), Gaps = 3/143 (2%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML ++ +++ + R M EK ++ ++SAT ++ +M + I
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFR---MTPHEKQVM-MFSATLSKEIRPVCRKFMQDPMEI 249
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 250 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 309
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
FP+ IH M QEER + F +
Sbjct: 310 QNFPAIAIHRGMPQEERLSRYQQFKD 335
>gi|2739119 (AF029061) BAT1 [Homo sapiens]
Length = 284
Score = 64.0 bits (153), Expect = 9e-10
Identities = 44/143 (30%), Positives = 73/143 (50%), Gaps = 3/143 (2%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML ++ +++ + R M EK ++ ++SAT ++ +M + I
Sbjct: 50 ILDECDKMLEQLDMRRDVQEIFR---MTPHEKQVM-MFSATLSKEIRPVCRKFMQDPMEI 105
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 106 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 165
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
FP+ IH M QEER + F +
Sbjct: 166 QNFPAIAIHRGMPQEERLSRYQQFKD 191
>gi|3712663 (AF029062) DEAD-box protein [Homo sapiens]
Length = 284
Score = 64.0 bits (153), Expect = 9e-10
Identities = 42/143 (29%), Positives = 72/143 (49%), Gaps = 3/143 (2%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML ++ +++ + R+ K+ + ++SAT ++ +M + I
Sbjct: 50 ILDECDKMLEQLDMRRDVQEIFRMTPXEKQ----VMMFSATLSKEIRPVCRKFMQDPMEI 105
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 106 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 165
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
FP+ IH M QEER + F +
Sbjct: 166 QNFPAIAIHRGMPQEERLSRYQQFKD 191
>gi|2500534|sp|Q07478|HE47_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG
>gi|2131326|pir||S67620 hypothetical protein YDL084w -
yeast (Saccharomyces cerevisiae)
>gi|1431108|emb|CAA98650| (Z74132) ORF YDL084w
[Saccharomyces cerevisiae]
Length = 446
Score = 64.0 bits (153), Expect = 9e-10
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 3/218 (1%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DE DK+L ++ +++ + R +K+ + ++SAT ++ ++ N I
Sbjct: 213 VIDECDKVLEELDMRRDVQEIFRATPRDKQ----VMMFSATLSQEIRPICRRFLQNPLEI 268
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y ++ +EK L LL+ +EF Q IIF + L +
Sbjct: 269 FVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNA 328
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
FP+ +H MKQEER + F + K
Sbjct: 329 SNFPAITVHGHMKQEERIARYKAFKDFEK------------------------------- 357
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+I V +D+ RGID + +NL IN++
Sbjct: 358 ----------------RICVSTDVFGRGIDIERINLAINYD 382
>gi|2443810 (AF020432) eukaryotic translation initiation factor XeIF-4AIII
[Xenopus laevis]
Length = 414
Score = 64.0 bits (153), Expect = 9e-10
Identities = 45/142 (31%), Positives = 71/142 (49%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML+ F I + R L + +I SAT P + + + +M + I
Sbjct: 187 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLI----SATLPHEILEMTNKFMTDPIRI 242
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + EL+L GI QF+ V+ +E K L L + + Q +IFCN V+ L K+ +
Sbjct: 243 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE 302
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
F +H M Q+ER + F
Sbjct: 303 ANFTVSSMHGDMPQKERESIMKEF 326
>gi|446778|prf||1912301A initiation factor eIF-4A [Drosophila melanogaster]
Length = 402
Score = 63.6 bits (152), Expect = 1e-09
Identities = 58/218 (26%), Positives = 94/218 (42%), Gaps = 4/218 (1%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I+ + ++L + + + L SAT P V + +M + I
Sbjct: 176 VLDEADEMLSRGFKDQIQDVFKMLPPD----VQVILLSATMPPDVLEVSRCFMRDPVSIL 231
Query: 478 LMK-ELSLIGIYQFYALVDIKE---KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
+ K EL+L GI QFY V++K+ KL L L + + Q +IFC V+ L +++
Sbjct: 232 VKKEELTLEGIKQFY--VNVKQENWKLGTLCDLYDTLSITQSVIFCTTRRKVDQLTQEMS 289
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXX 131
F +H M+Q +R + F
Sbjct: 290 IHNFTVSAMHGDMEQRDREVIMKQFRSG-------------------------------- 317
Query: 130 XXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 318 ---------------SSRVLITTDLLARGIDVQQVSLVINYD 344
>gi|1170506|sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) >gi|100275|pir||S22578
translation initiation factor eIF-4A - curled-leaved
tobacco >gi|19697|emb|CAA43513| (X61205) nicotiana
eukaryotic translation initiation factor 4A [Nicotiana
plumbaginifolia]
Length = 413
Score = 63.2 bits (151), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|1170508|sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A-8 (EIF-4A-8)
>gi|2119931|pir||S60244 translation initiation factor
eIF-4A.8, anther-specific - common tobacco
>gi|475219|emb|CAA55639| (X79004) translation initiation
factor (eIF-4A) [Nicotiana tabacum]
>gi|475221|emb|CAA55640| (X79005) translation initiation
factor (eIF-4A) [Nicotiana tabacum]
Length = 413
Score = 63.2 bits (151), Expect = 2e-09
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + ++L K+ + ++SAT P D +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQML----PTKVQVGVFSATMPPEALDITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2500517|sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-9 (EIF-4A-9)
>gi|485951|emb|CAA55736| (X79135) NeIF-4A9 [Nicotiana
tabacum]
Length = 413
Score = 63.2 bits (151), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2119932|pir||S52017 translation initiation factor eIF-4A.9 - common tobacco
Length = 413
Score = 63.2 bits (151), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2119935|pir||S52020 translation initiation factor eIF-4A.15 - common tobacco
Length = 413
Score = 63.2 bits (151), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2500515|sp|Q40469|IF46_TOBAC EUKARYOTIC INITIATION FACTOR 4A-6 (EIF-4A-6)
>gi|485947|emb|CAA55740| (X79139) NeIF-4A6 [Nicotiana
tabacum]
Length = 253
Score = 63.2 bits (151), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 28 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGIFSATMPPEALEITRKFMNKPVRIL 83
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 84 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGR 143
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 144 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 169
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 170 -------------SSRVLITTDLLARGIDVQQVSLVINYD 196
>gi|2119936|pir||S52021 translation initiation factor eIF-4A.6 - common tobacco (fragment)
Length = 254
Score = 62.8 bits (150), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 28 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 83
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 84 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGR 143
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 144 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 169
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 170 -------------SSRVLITTDLLARGIDVQQVSLVINYD 196
>gi|2500518|sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-11 (EIF-4A-11)
>gi|485987|emb|CAA55737| (X79136) NeIF-4A11 [Nicotiana
tabacum]
Length = 413
Score = 62.8 bits (150), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2119933|pir||S52018 translation initiation factor eIF-4A.11 - common tobacco
Length = 413
Score = 62.8 bits (150), Expect = 2e-09
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2500532|sp|Q27268|HE47_DROME PROBABLE ATP-DEPENDENT RNA HELICASE WM6 >gi|1079062|pir||S51601
DEAD-box RNA helicase WM6 - fruit fly (Drosophila
melanogaster) >gi|158313 (L06018) DECD family putative
RNA helicase [Drosophila melanogaster]
>gi|505583|emb|CAA56197| (X79802) WM6 [Drosophila
melanogaster]
Length = 424
Score = 62.5 bits (149), Expect = 3e-09
Identities = 55/218 (25%), Positives = 87/218 (39%), Gaps = 1/218 (0%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DE DKML ++ +++ + R K+ + S V K F+ M Y+
Sbjct: 191 VLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPME--VYV 248
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
+L+L G+ Q Y + EK L LL+ +EF Q +IF +V L+ +T+
Sbjct: 249 DDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQN 308
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
FP+ IH M QEER + F + K
Sbjct: 309 FPAIGIHRGMTQEERLNRYQQFKDFQK--------------------------------- 335
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV ++L RG+D + VN+V N++
Sbjct: 336 --------------RILVATNLFGRGMDIERVNIVFNYD 360
>gi|2119937|pir||S52022 translation initiation factor eIF-4A.13 - common tobacco (fragment)
Length = 355
Score = 62.1 bits (148), Expect = 4e-09
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNQPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + E++L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|1170503|sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1) >gi|322503|pir||JC1452
translation initiation factor eIF-4A1 - Arabidopsis
thaliana >gi|16554|emb|CAA46188| (X65052) eukaryotic
translation initiation factor 4A-1 [Arabidopsis
thaliana]
Length = 412
Score = 62.1 bits (148), Expect = 4e-09
Identities = 59/218 (27%), Positives = 86/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M I
Sbjct: 186 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMSKPVRIL 241
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 242 VKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 301
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 302 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 327
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVINF+
Sbjct: 328 -------------SSRVLITTDLLARGIDVQQVSLVINFD 354
>gi|2341061 (U73459) translational initiation factor eIF-4A [Zea mays]
Length = 414
Score = 62.1 bits (148), Expect = 4e-09
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 188 VLDEADEMLSRGFKDQIYDIFQLL----PSKIQVGVFSATMPPEALEITRKFMNKPVRIL 243
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD ++ KL L L + Q +IF N V+ L K+
Sbjct: 244 VKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 303
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 304 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 329
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 330 -------------SSRVLITTDLLARGIDVQQVSLVINYD 356
>gi|2119934|pir||S52019 translation initiation factor eIF-4A.7 - common tobacco
Length = 413
Score = 61.7 bits (147), Expect = 5e-09
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + E++L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2500522|sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|603190 (U17979)
translation initiation factor eIF-4A [Zea mays]
Length = 410
Score = 61.7 bits (147), Expect = 5e-09
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 184 VLDEADEMLSRGFKDQIYDIFQLL----PSKIQVGVFSATMPPEALEITRKFMNKPVRIL 239
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY +D ++ KL L L + Q +IF N V+ L K+
Sbjct: 240 VKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 299
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 300 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 325
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 326 -------------SSRVLITTDLLARGIDVQQVSLVINYD 352
>gi|2500531|sp|Q63413|HE47_RAT PROBABLE ATP-DEPENDENT RNA HELICASE P47
Length = 428
Score = 61.7 bits (147), Expect = 5e-09
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML ++ +++ + R M EK ++ ++SAT ++ +M + I
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFR---MTPHEKQVM-MFSATLSKEIRPVCRKFMQDPMEI 249
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 250 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 309
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
P+ IH M QEER + F +
Sbjct: 310 QNLPAIAIHRGMPQEERLSRYQQFKD 335
>gi|539961|pir||A42811 translation initiation factor eIF-4A homolog - rat >gi|205942
(M75168) liver nuclear protein p47 [Rattus norvegicus]
Length = 399
Score = 61.7 bits (147), Expect = 5e-09
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 658 VFDEADKMLS-VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DE DKML ++ +++ + R M EK ++ ++SAT ++ +M + I
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFR---MTPHEKQVM-MFSATLSKEIRPVCRKFMQDPMEI 249
Query: 481 XLMKE--LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ E L+L G+ Q+Y + EK L LL+ +EF Q +IF +V LA + +
Sbjct: 250 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 309
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
P+ IH M QEER + F +
Sbjct: 310 QNLPAIAIHRGMPQEERLSRYQQFKD 335
>gi|2286151 (AF007580) translation initiation factor [Zea mays]
Length = 414
Score = 61.7 bits (147), Expect = 5e-09
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 188 VLDEADEMLSRGFKDQIYDIFQLL----PAKIQVGVFSATMPPEALEITRKFMNKPVRIL 243
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY VD ++ KL L L + Q +IF N V+ L K+
Sbjct: 244 VKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 303
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 304 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 329
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 330 -------------SSRVLITTDLLARGIDVQQVSLVINYD 356
>gi|4490561|emb|CAB38638| (Y17289) RNA helicase [Plasmodium cynomolgi]
Length = 182
Score = 61.7 bits (147), Expect = 5e-09
Identities = 45/141 (31%), Positives = 68/141 (47%), Gaps = 2/141 (1%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYM-HNICYI 482
V DEAD+ML+ F I + R L + + L SAT P + + + +M H I +
Sbjct: 1 VLDEADEMLNRGFKEQIYDVYRYLPPATQ----VVLVSATLPHEILEMTNKFMTHPIRIL 56
Query: 481 XLMKELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
EL+L GI QF+ V+ +E K L L + + Q +IFC V+ L K+ +
Sbjct: 57 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREA 116
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
F +H M Q+ER + F
Sbjct: 117 NFTVSSMHGDMPQKERESIMKEF 139
>gi|2119938|pir||S52023 translation initiation factor eIF-4A.14 - common tobacco
Length = 413
Score = 61.3 bits (146), Expect = 6e-09
Identities = 58/218 (26%), Positives = 86/218 (38%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMSKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + E++L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|1170511|sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-10 (EIF-4A-10)
>gi|1362118|pir||S55898 translation initiation factor
eIF-4A.10 - common tobacco >gi|475213|emb|CAA55642|
(X79009) translation initiation factor (eIF-4A)
[Nicotiana tabacum] >gi|475216|emb|CAA55641| (X79008)
translation initiation factor (eIF-4A) [Nicotiana
tabacum]
Length = 413
Score = 60.9 bits (145), Expect = 8e-09
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + +++L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|1170505|sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) >gi|322504|pir||JC1453
translation initiation factor eIF-4A2 - Arabidopsis
thaliana >gi|16556|emb|CAA46189| (X65053) eukaryotic
translation initiation factor 4A-2 [Arabidopsis
thaliana]
Length = 412
Score = 60.9 bits (145), Expect = 8e-09
Identities = 58/218 (26%), Positives = 86/218 (38%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M I
Sbjct: 186 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMSKPVRIL 241
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY V+ ++ KL L L + Q +IF N V+ L K+
Sbjct: 242 VKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 301
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 302 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 327
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVINF+
Sbjct: 328 -------------SSRVLITTDLLARGIDVQQVSLVINFD 354
>gi|2500519|sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A-13 (EIF-4A-13)
>gi|485941|emb|CAA55741| (X79140) NeIF-4A13 [Nicotiana
tabacum]
Length = 355
Score = 60.9 bits (145), Expect = 8e-09
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNQPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + +++L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|2500516|sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-7 (EIF-4A-7)
>gi|485949|emb|CAA55738| (X79137) NeIF-4A7 [Nicotiana
tabacum]
Length = 413
Score = 60.5 bits (144), Expect = 1e-08
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMNKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + +++L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|1944405|dbj|BAA19572| (D86601) DEAD family RNA helicase; germ cell specific in Bombyx 5th
instar larva, a material factor [Bombyx mori]
Length = 601
Score = 60.5 bits (144), Expect = 1e-08
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 5/219 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +I+ ++ +M + K ++SATFP ++ +++N ++
Sbjct: 335 VVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFV 394
Query: 481 XLMKELSLIG-----IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
+ ++G + Q + V EK + LK L+ + + K+ ++F N + +A
Sbjct: 395 A----VGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAM 450
Query: 316 VTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXX 137
+++ + IH Q ER + NF SG
Sbjct: 451 LSEQQLLTSSIHGDRMQREREEALQNFK-------------SGKHC-------------- 483
Query: 136 XXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
ILV + + RG+D KNV++V+N++
Sbjct: 484 --------------------ILVATAVAARGLDIKNVDIVVNYD 507
>gi|1170509|sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|478306|pir||JN0839
translation initiation factor eIF-4A - wheat
Length = 414
Score = 60.5 bits (144), Expect = 1e-08
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 188 VLDEADEMLSRGFKDQIYDIFQLL----PGKIQVGVFSATMPPEALEITRKFMNKPVRIL 243
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 244 VKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGR 303
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 304 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 329
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 330 -------------SSRVLITTDLLARGIDVQQVSLVINYD 356
>gi|2500520|sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-14 (EIF-4A-14)
>gi|485943|emb|CAA55742| (X79141) NeIF-4A14 [Nicotiana
tabacum]
Length = 413
Score = 60.1 bits (143), Expect = 1e-08
Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M I
Sbjct: 187 VLDEADEMLSRGFKDQIYDIFQLL----PPKIQVGVFSATMPPEALEITRKFMSKPVRIL 242
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + +++L GI QFY VD +E KL L L + Q +IF N V+ L K+
Sbjct: 243 VKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|95749|pir||S12698 probable RNA helicase - Escherichia coli >gi|41248|emb|CAA36872|
(X52647) DEAD box protein (AA 1-432) [Escherichia coli]
Length = 432
Score = 59.7 bits (142), Expect = 2e-08
Identities = 46/219 (21%), Positives = 88/219 (40%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I +IR +++ L+SAT+P + + I
Sbjct: 125 LVMDEADRMLDMGFSDAIDDVIRFAPASRQTL----LFSATWPEAIAAISGRVQRDPLAI 180
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
+ +L I Q + K K+ L+ LL+ + C++FCN + + + + ++G
Sbjct: 181 EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVG 240
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +H ++Q +R++ F+
Sbjct: 241 QSALSLHGDLEQRDRDQTLVRFANG----------------------------------- 265
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++LV +D+ RG+D K++ LV+NFE
Sbjct: 266 ------------SARVLVATDVAARGLDIKSLELVVNFE 292
>gi|3165536 (AF067608) similar to DEAD-box helicases (Pfam: DEAD.hmm, score:
262.89) (Pfam: helicase_C.hmm, score: 76.21)
[Caenorhabditis elegans]
Length = 571
Score = 59.7 bits (142), Expect = 2e-08
Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHN---- 494
++ DEAD++L + F ++ ++R L ++ L+SAT V + V + +H+
Sbjct: 219 LIIDEADRILDIGFEIEMQQVLRHLPKQRQSM----LFSATHSPKVDELVKLALHSNPVR 274
Query: 493 ICYIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
+ +E ++ G+ Q Y + ++L L T L K + K+ ++F ++ N+V+ +
Sbjct: 275 VSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSCNSVKFHHELL 334
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSES 227
+ P IH K KQ++R F F ++
Sbjct: 335 NYIDIPCMSIHGKQKQQKRTTTFFQFCQA 363
>gi|416881|sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA >gi|1742212|dbj|BAA14946| (D90773)
ATP-dependent RNA helicase DbpA. [Escherichia coli]
>gi|1787605 (AE000232) ATP-dependent RNA helicase
[Escherichia coli]
Length = 457
Score = 59.7 bits (142), Expect = 2e-08
Identities = 46/219 (21%), Positives = 88/219 (40%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I +IR +++ L+SAT+P + + I
Sbjct: 150 LVMDEADRMLDMGFSDAIDDVIRFAPASRQTL----LFSATWPEAIAAISGRVQRDPLAI 205
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
+ +L I Q + K K+ L+ LL+ + C++FCN + + + + ++G
Sbjct: 206 EIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVG 265
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXXX 122
+ +H ++Q +R++ F+
Sbjct: 266 QSALSLHGDLEQRDRDQTLVRFANG----------------------------------- 290
Query: 121 XXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++LV +D+ RG+D K++ LV+NFE
Sbjct: 291 ------------SARVLVATDVAARGLDIKSLELVVNFE 317
>gi|3845295 (AE001421) RNA helicase [Plasmodium falciparum]
Length = 562
Score = 58.9 bits (140), Expect = 3e-08
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+VFDEADK+LS +F +I L+ +L N+ I L+SAT V + N +
Sbjct: 303 LVFDEADKLLSQDFESSINKLLLILPPNR----ITFLFSATMTKNVAKLKKACLKNPVKV 358
Query: 481 XLMKELSLIG-IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + S + + + Y + +K K L +L + + IIF N + L ++
Sbjct: 359 EVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNL 418
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYN 215
G S +H K+ Q +R ++F + KYN
Sbjct: 419 GLKSICLHGKLTQNQRLSSLNSFKVN-KYN 447
>gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A family
[Methanobacterium thermoautotrophicum]
Length = 425
Score = 58.6 bits (139), Expect = 4e-08
Identities = 42/142 (29%), Positives = 72/142 (50%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML++ F +I+ R+LS + E+ L+SAT + YM N +
Sbjct: 149 VVLDEADEMLNMGFIDDIE---RILS-HVPERRQTMLFSATVSKPILRIARKYMRNPQVM 204
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
+ K+ S I +FY ++K+ L +L+ + +IFCN V+ L ++ MG
Sbjct: 205 RVEKKHSP-KIDEFYFKTREEDKVELLDWILSSNNIRMGLIFCNTKRRVQRLRRQLNRMG 263
Query: 301 FPSYYIHSKMKQEERNKVFHNF 236
+ + IH + Q +R +V F
Sbjct: 264 YSADEIHGDLSQSKRERVMERF 285
>gi|2500537|sp|Q03532|HAS1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE HAS1 >gi|626265|pir||S47451
hypothetical protein YMR290c - yeast (Saccharomyces
cerevisiae) >gi|530347|emb|CAA56799| (X80836) RNA
helicase [Saccharomyces cerevisiae]
Length = 505
Score = 58.2 bits (138), Expect = 5e-08
Identities = 36/142 (25%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMH-NICY 485
++ DEAD++L + F ++ +I++L ++ + L+SAT + V+D + + +
Sbjct: 193 LIIDEADRILEIGFEDEMRQIIKILPNEDRQSM---LFSATQTTKVEDLARISLRPGPLF 249
Query: 484 IXLMKEL---SLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
I ++ E + G+ Q Y + D ++ L + L + + K+ I+F ++ N+V+ A +
Sbjct: 250 INVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELL 309
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNF 236
+ P +H K KQ++R F F
Sbjct: 310 NYIDLPVLELHGKQKQQKRTNTFFEF 335
>gi|547712|sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|542153|pir||S38358
translation initiation factor eIF-4A - rice
>gi|303844|dbj|BAA02152| (D12627) eukaryotic initiation
factor 4A [Oryza sativa]
Length = 413
Score = 57.8 bits (137), Expect = 7e-08
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS F I + +LL KI + ++SAT P + +M+ I
Sbjct: 188 VLDEADEMLSRGFKDQIYDIFQLL----PSKIQVGVFSATMPPEALEITRKFMNKPVRIL 243
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + EL+L GI QFY V+ +E KL L L + Q +IF N V+ L K+
Sbjct: 244 VKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFV-NTRKVDWLTDKMRGR 302
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
H M Q R+ + F
Sbjct: 303 DHTVSATHGDMDQNTRDIIMREFRSG---------------------------------- 328
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++L+ +DL+ RGID + V+LVIN++
Sbjct: 329 -------------SSRVLITTDLLARGIDVQQVSLVINYD 355
>gi|1764094 (U81597) ATP-dependent RNA helicase [Leishmania amazonensis]
Length = 855
Score = 56.6 bits (134), Expect = 2e-07
Identities = 44/144 (30%), Positives = 72/144 (49%), Gaps = 9/144 (6%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD++ + I +++ L E L+SAT P+V+ +F S ++HN I
Sbjct: 172 LVLDEADRLFELGLQPQIGAIMQKLP----ESCQRALFSATMPTVLAEFTSAWLHNPVVI 227
Query: 481 XLMKELSLIG-IYQFYALVDIKEKLHCLKTLLNKI--------EFKQCIIFCNNVNNVEL 329
L E+ L + Q LV EK+ L LL ++ Q +IF + +VE
Sbjct: 228 RLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVLHVGEAAANNAQALIFVESKFHVEF 287
Query: 328 LAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSE 230
L M +T + +H +M QE R +F++
Sbjct: 288 LLMILTAYSISTSAVHGQMDQEARRLAVRSFAK 320
>gi|1351666|sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C1F7.02C
>gi|2130294|pir||S62574 hypothetical protein SPAC1F7.02c
- fission yeast (Schizosaccharomyces pombe)
>gi|1067204|emb|CAA91949| (Z67998) unknown
[Schizosaccharomyces pombe]
Length = 578
Score = 55.0 bits (130), Expect = 5e-07
Identities = 38/147 (25%), Positives = 77/147 (51%), Gaps = 4/147 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMH-NICY 485
+V DEAD++L + F ++ ++++L ++ + L+SAT + V+D + + Y
Sbjct: 240 LVIDEADRILEIGFEDEMRQIMKILPSENRQTL---LFSATQTTKVEDLARISLKPGPLY 296
Query: 484 IXLM--KELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
+ + K S + G+ Q Y +VD ++ L + L + K+ I+F ++ +V+ +A +
Sbjct: 297 VNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELL 356
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ P +H K KQ+ R F F + K
Sbjct: 357 NYIDLPVLDLHGKQKQQRRTNTFFEFCNAEK 387
>gi|1881268|dbj|BAA19295| (AB001488) ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG. [Bacillus
subtilis] >gi|2632758|emb|CAB12265| (Z99106) similar to
ATP-dependent RNA helicase [Bacillus subtilis]
Length = 511
Score = 55.0 bits (130), Expect = 5e-07
Identities = 43/144 (29%), Positives = 71/144 (48%), Gaps = 1/144 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML++ F +I+ +LS E L L+SAT P+ +K +M ++
Sbjct: 166 VVMDEADEMLNMGFIDDIE---SILSNVPSEHQTL-LFSATMPAPIKRIAERFMTEPEHV 221
Query: 481 XLM-KELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ KE+++ I QFY V ++K L LL+ + I+F V+ LA +
Sbjct: 222 KVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLR 281
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSE 230
G+ + IH + Q +R F E
Sbjct: 282 GYAAEGIHGDLTQAKRMVALRKFKE 306
>gi|2134051|pir||I51235 DEAD box protein - African clawed frog (fragment) >gi|2896107
(AF046043) DEAD box protein [Xenopus laevis]
Length = 700
Score = 53.9 bits (127), Expect = 1e-06
Identities = 52/219 (23%), Positives = 87/219 (38%), Gaps = 5/219 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ L+ M KEK ++SAT+P ++ S Y+ +
Sbjct: 429 LVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKS---E 485
Query: 481 XLMKELSLIG-----IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
L + L+G + Q + K+ L +L E ++ +IF N + +A
Sbjct: 486 HLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLEILKSSEKERTMIFVNTKKKADFIAGY 545
Query: 316 VTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXX 137
+ F S IH +Q +R +F RT
Sbjct: 546 LCQEKFSSTSIHGDREQYQRESALWDF-----------------RTGK------------ 576
Query: 136 XXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
C ++VC+ + RG+D +NV VIN++
Sbjct: 577 ------------------CTVIVCTAVAARGLDIENVQHVINYD 602
>gi|548730|sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE >gi|560801 (L02123)
ATP-dependent RNA helicase [Escherichia coli]
>gi|1651360|dbj|BAA35463| (D90717) Putative
ATP-dependent RNA helicase RhlE. [Escherichia coli]
>gi|1787016 (AE000182) putative ATP-dependent RNA
helicase [Escherichia coli] >gi|4062355|dbj|BAA35457|
(D90716) Putative ATP-dependent RNA helicase RhlE.
[Escherichia coli]
Length = 454
Score = 53.1 bits (125), Expect = 2e-06
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +I+ ++ L ++ L+SATF +K +HN I
Sbjct: 153 LVLDEADRMLDMGFIHDIRRVLTKLPAKRQNL----LFSATFSDDIKALAEKLLHNPLEI 208
Query: 481 XLMKELSLIG-IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + + + Q VD K K L ++ K ++Q ++F + LA ++
Sbjct: 209 EVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKD 268
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
G S IH Q R + +F
Sbjct: 269 GIRSAAIHGNKSQGARTRALADF 291
>gi|226021|prf||1406327A growth regulated nuclear 68 protein [Homo sapiens]
Length = 594
Score = 53.1 bits (125), Expect = 2e-06
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVK----DFVSMYMH- 497
+V DEAD+ML + F I+ ++ + +++ ++SAT+P V+ DF+ Y+H
Sbjct: 225 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL----MWSATWPKEVRQLAEDFLKDYIHI 280
Query: 496 NICYIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
NI + L +++ I V+ EKL L + + + I+F + L K
Sbjct: 281 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 340
Query: 316 VTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXX 137
+ G+P+ IH Q+ER+ V + F
Sbjct: 341 MRRDGWPAMGIHGDKSQQERDWVLNEFKHG------------------------------ 370
Query: 136 XXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
IL+ +D+ +RG+D ++V VIN+++
Sbjct: 371 -----------------KAPILIATDVASRGLDVEDVKFVINYDY 398
>gi|465975|sp|P34580|YN21_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICASE T26G10.1 IN CHROMOSOME III
>gi|482102|pir||S40731 ATP-dependent RNA helicase
homolog T26G10.1 - Caenorhabditis elegans
>gi|3880293|emb|CAA82362| (Z29115) similar to RNA
helicases, deleted exon 1397-1495 which introduced stop
codon at 3' splice; 5' splice looks v. good; ?possible
alternate final exon.; cDNA EST yk368a4.3 comes from
this gene; cDNA EST yk368a4.5 comes fr...
Length = 489
Score = 53.1 bits (125), Expect = 2e-06
Identities = 43/219 (19%), Positives = 86/219 (38%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DEAD++L+++F + +++++ ++ L+SAT V + + +
Sbjct: 191 LIMDEADRILNMDFEVELDKILKVIPRERRTY----LFSATMTKKVSKLERASLRDPARV 246
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + + Q Y V K K L LLN+ I+FC +A+ + +
Sbjct: 247 SVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQL 306
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
G + +H +M QE+R + F +
Sbjct: 307 GMQAVPLHGQMSQEKRLGSLNKFKSKAR-------------------------------- 334
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILVC+D+ RG+D +V++VIN++
Sbjct: 335 ---------------EILVCTDVAARGLDIPHVDMVINYD 359
>gi|2500527|sp|Q61656|DDX5_MOUSE PROBABLE RNA-DEPENDENT HELICASE P68 (DEAD-BOX PROTEIN P68) (DEAD
BOX PROTEIN 5) >gi|2137742|pir||I48385 RNA helicase TNZ2
- mouse >gi|51263|emb|CAA46581| (X65627) p68 RNA
helicase [Mus musculus]
Length = 614
Score = 53.1 bits (125), Expect = 2e-06
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVK----DFVSMYMH- 497
+V DEAD+ML + F I+ ++ + +++ ++SAT+P V+ DF+ Y+H
Sbjct: 245 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL----MWSATWPKEVRQLAEDFLKDYIHI 300
Query: 496 NICYIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
NI + L +++ I V+ EKL L + + + I+F + L K
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 316 VTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXX 137
+ G+P+ IH Q+ER+ V + F
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHG------------------------------ 390
Query: 136 XXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
IL+ +D+ +RG+D ++V VIN+++
Sbjct: 391 -----------------KAPILIATDVASRGLDVEDVKFVINYDY 418
>gi|129383|sp|P17844|DDX5_HUMAN PROBABLE RNA-DEPENDENT HELICASE P68 (DEAD-BOX PROTEIN P68) (DEAD
BOX PROTEIN 5) >gi|1085350|pir||JC1087 RNA helicase,
ATP-dependent - human >gi|35220|emb|CAA36324| (X52104)
p68 protein (AA 1-614) [Homo sapiens]
>gi|38318|emb|CAA33751| (X15729) protein p68 (AA 1-614)
[Homo sapiens] >gi|2599360 (AF015812) RNA helicase p68
[Homo sapiens]
Length = 614
Score = 53.1 bits (125), Expect = 2e-06
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVK----DFVSMYMH- 497
+V DEAD+ML + F I+ ++ + +++ ++SAT+P V+ DF+ Y+H
Sbjct: 245 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL----MWSATWPKEVRQLAEDFLKDYIHI 300
Query: 496 NICYIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
NI + L +++ I V+ EKL L + + + I+F + L K
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 316 VTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXX 137
+ G+P+ IH Q+ER+ V + F
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHG------------------------------ 390
Query: 136 XXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
IL+ +D+ +RG+D ++V VIN+++
Sbjct: 391 -----------------KAPILIATDVASRGLDVEDVKFVINYDY 418
>gi|134787|sp|P25808|SPB4_YEAST ATP-DEPENDENT RRNA HELICASE SPB4 >gi|83511|pir||S14942 RNA helicase
SPB4 - yeast (Saccharomyces cerevisiae)
>gi|4522|emb|CAA34272| (X16147) spb4 protein product (AA
1-606) [Saccharomyces cerevisiae]
>gi|836754|dbj|BAA09238| (D50617) rRNA helicase
[Saccharomyces cerevisiae] >gi|870818|dbj|BAA08033|
(D44600) PUTATIVE RRNA HELICASE SPB4 [Saccharomyces
cerevisiae]
Length = 606
Score = 53.1 bits (125), Expect = 2e-06
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD++L + F + + ++RLL ++ L+SAT S D + N I
Sbjct: 169 VVMDEADRLLDMSFIKDTEKILRLLPKQRRTG----LFSATMRSAGSDIFKTGLRNPVRI 224
Query: 481 XL-MKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K + + Y +V+ EKL L ++LN +FK+CI++ +V + +
Sbjct: 225 TVNSKNQAPSSLKLNYCVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYL 284
Query: 304 G--------FPSYYIHSKMKQEERNKVFHNFSES 227
G + +H K++ R K F++S
Sbjct: 285 GKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDS 318
>gi|3775997|emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis thaliana]
Length = 376
Score = 52.7 bits (124), Expect = 2e-06
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD++L+ +F ++ ++ + + +K L+SAT V+ + N I
Sbjct: 88 LVLDEADRLLNEDFEKSLNQILEEIPLERKTF----LFSATMTKKVRKLQRACLRNPVKI 143
Query: 481 XLMKELSLIG-IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ S + + Q Y V K K L +L+++ +IF + LA+ + +
Sbjct: 144 EAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSL 203
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
GF + I +M Q +R + F
Sbjct: 204 GFRAIPISGQMTQSKRLGALNKFKAGE--------------------------------- 230
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
C ILVC+D+ +RG+D +V++VIN++
Sbjct: 231 --------------CNILVCTDVASRGLDIPSVDVVINYD 256
>gi|1731006|sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SODA INTERGENIC REGION
>gi|1303839|dbj|BAA12495| (D84432) YqfR [Bacillus
subtilis] >gi|2634947|emb|CAB14444| (Z99116) similar to
ATP-dependent RNA helicase [Bacillus subtilis]
Length = 438
Score = 52.7 bits (124), Expect = 2e-06
Identities = 49/219 (22%), Positives = 84/219 (37%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD ML + F ++ Y+ E + + ++SAT P +K F+ YM N Y
Sbjct: 153 LVIDEADLMLDMGFLADVDYI----GSRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYA 208
Query: 481 XL-MKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K+++ I ++K L +++ + I+F N N + +A +T
Sbjct: 209 HVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGK 268
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSE-SYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
G +H + ER KV ++ + Y
Sbjct: 269 GMKIGLLHGGLTPRERKKVMKQINDLEFTY------------------------------ 298
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
++ +DL RGID K V+ VIN+E
Sbjct: 299 ------------------IIATDLAARGIDIKGVSHVINYE 321
>gi|1706338|sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG >gi|1480333|emb|CAB00899|
(Z77137) deaD [Mycobacterium tuberculosis]
Length = 563
Score = 50.8 bits (119), Expect = 9e-06
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML++ F +++ R+LS + K + L+SAT P ++ + Y+H+ +
Sbjct: 160 LVLDEADEMLTMGFADDVE---RILSETPEYKQV-ALFSATMPPAIRKLSAKYLHDPFEV 215
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ ++ I Q Y + + K+ L +L F+ I+F E +A K+
Sbjct: 216 TCKAKTAVAENISQSY--IQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRAR 273
Query: 304 GFPSYYIHSKMKQEERNK 251
GF + I + Q +R +
Sbjct: 274 GFSAAAISGDVPQAQRER 291
>gi|3877954|emb|CAB04518| (Z81555) similar to ATP-dependent helicase (DEAD box); cDNA EST
yk436c8.5 comes from this gene; cDNA EST EMBL:D35872
comes from this gene; cDNA EST EMBL:D67566 comes from
this gene; cDNA EST EMBL:D73766 comes from this gene;
cD...
Length = 561
Score = 50.4 bits (118), Expect = 1e-05
Identities = 44/142 (30%), Positives = 69/142 (47%), Gaps = 6/142 (4%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F IK +I + +++ ++SAT+P V+ S + + ++
Sbjct: 280 LVLDEADRMLDMGFEPQIKKIIGQIRPDRQTL----MFSATWPKEVRALASDFQKDAAFL 335
Query: 481 XLMKELSLIGIYQFYALVDIKE---KLHCLKTLLNKI-EFKQC--IIFCNNVNNVELLAM 320
+ L L + +VDI E K L LLN I K+C IIF + L
Sbjct: 336 N-VGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTR 394
Query: 319 KVTDMGFPSYYIHSKMKQEERNKVFHNF 236
+ G+P+ IH Q ER+ V F
Sbjct: 395 AMRRDGWPTLCIHGDKNQGERDWVLQEF 422
>gi|1175426|sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C12C2.06
>gi|984214|emb|CAA90819| (Z54140) probable ATP-dependent
RNA helicase [Schizosaccharomyces pombe]
Length = 503
Score = 50.4 bits (118), Expect = 1e-05
Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD ML + + I+ L + + +I+L +SATF V+ + + N I
Sbjct: 259 VLDEADNMLDQQGLGDQSMRIKHL-LPRNTQIVL--FSATFSERVEKYAERFAPNANEIR 315
Query: 478 LM-KELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
L +ELS+ GI Q Y +E K + L L + Q IIFC + E +A ++T
Sbjct: 316 LKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD 375
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
G + ++ +R+ + +F
Sbjct: 376 GHTVACLTGNLEGAQRDAIMDSFRVGTS-------------------------------- 403
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K+LV ++++ RGID VNLV+N++
Sbjct: 404 ---------------KVLVTTNVIARGIDVSQVNLVVNYD 428
>gi|84895|pir||A31922 ATP-dependent RNA helicase homolog - fruit fly (Drosophila
melanogaster) >gi|158796 (M23560) Mab4611 antigen (vasa)
[Drosophila melanogaster]
Length = 648
Score = 50.0 bits (117), Expect = 2e-05
Identities = 43/219 (19%), Positives = 93/219 (41%), Gaps = 8/219 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ ++M + + ++ +SATFP ++ ++ N ++
Sbjct: 383 VVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLM--FSATFPEEIQRMAGEFLKNYVFV 440
Query: 481 XLMKELSLIGIYQFYALVDIKEKLH-----CLKTLLNKIEFKQC---IIFCNNVNNVELL 326
+ ++G A D+K+ ++ ++ L +I +Q I+F + L
Sbjct: 441 AI----GIVG----GACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFL 492
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXX 146
A +++ FP+ IH Q +R + +F
Sbjct: 493 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--------------------------- 525
Query: 145 XXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K+L+ + + +RG+D KN+ VIN++
Sbjct: 526 --------------------SMKVLIATSVASRGLDIKNIKHVINYD 552
>gi|2231116|emb|CAA65745| (X97017) heat resistant RNA dependent ATPase [Thermus thermophilus]
Length = 510
Score = 50.0 bits (117), Expect = 2e-05
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+MLS+ F ++ L+ +++ L+SAT PS K YM N I
Sbjct: 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTL----LFSATLPSWAKRLAERYMKNPVLIN 204
Query: 478 LMKELSLIGIYQFYAL-VDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
++K+ + Y+ A+ ++ +L L LL + ++F E +A + +G
Sbjct: 205 VIKDEPV--TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG 262
Query: 301 FPSYYIHSKMKQEERNKVFHNFSE 230
+ +H + Q ER +V F +
Sbjct: 263 HLAQALHGDLSQGERERVLGAFRQ 286
>gi|3986287|dbj|BAA34994| (AB017003) DjVLGB [Dugesia japonica]
Length = 781
Score = 49.6 bits (116), Expect = 2e-05
Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ +I +M ++SATFP ++ + +++N ++
Sbjct: 339 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 398
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCI-IFCNNVNNVELLAMKVTD 308
+ + S I Q + EKL+ LK + N I IF + LA +
Sbjct: 399 TVGRVGSTSDSIKQEIIYMTDVEKLNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLS 458
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
G+P IH Q ER F
Sbjct: 459 KGYPVSSIHGDRSQVEREAALSMFRNGQ-------------------------------- 486
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
C ILV + + RG+D NV VIN++
Sbjct: 487 ---------------CPILVATAVAARGLDIPNVKHVINYD 512
>gi|1708151|sp|P20447|DBP3_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP3 (HELICASE CA3)
>gi|320699|pir||S30805 probable RNA helicase CA3 - yeast
(Saccharomyces cerevisiae) >gi|172582 (M80437)
[Saccharomyces cerevisiae gene, complete cds.], gene
product [Saccharomyces cerevisiae]
>gi|1322595|emb|CAA96783| (Z72600) ORF YGL078c
[Saccharomyces cerevisiae]
Length = 523
Score = 49.6 bits (116), Expect = 2e-05
Identities = 38/142 (26%), Positives = 70/142 (48%), Gaps = 8/142 (5%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML F +IK +IR +K++ + +++AT+P V++ S +M+N +
Sbjct: 259 LVLDEADRMLEKGFEEDIKNIIRETDASKRQTL---MFTATWPKEVRELASTFMNNPIKV 315
Query: 481 XLMKELSLIG---IYQFYALVDIKEKLHCLKTLLNKI-----EFKQCIIFCNNVNNVELL 326
+ L I Q +VD + K L LL K + ++ +IF +
Sbjct: 316 SIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARV 375
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNF 236
+ G+ IH + Q++R + + F
Sbjct: 376 ERNLKYNGYNVAAIHGDLSQQQRTQALNEF 405
>gi|4454799|gb|AAD20980| (AF079782) translation initiation factor 4A2 [Zea mays]
Length = 215
Score = 49.6 bits (116), Expect = 2e-05
Identities = 46/188 (24%), Positives = 72/188 (37%), Gaps = 2/188 (1%)
Query: 568 KIILELYSATFPSVVKDFVSMYMHNICYIXLMK-ELSLIGIYQFYALVDIKE-KLHCLKT 395
KI + ++SAT P + +M+ I + + EL+L GI QFY VD ++ KL L
Sbjct: 15 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCD 74
Query: 394 LLNKIEFKQCIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYN 215
L + Q +IF N V+ L K+ H M Q R+ + F
Sbjct: 75 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG---- 130
Query: 214 QNNNNIVSGVRTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDN 35
++L+ +DL+ RGID
Sbjct: 131 -------------------------------------------SSRVLITTDLLARGIDV 147
Query: 34 KNVNLVINFE 5
+ V+LVIN++
Sbjct: 148 QQVSLVINYD 157
>gi|1001719|dbj|BAA10556| (D64004) ATP-dependent RNA helicase DeaD [Synechocystis sp.]
Length = 492
Score = 49.2 bits (115), Expect = 3e-05
Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+MLS+ F ++K ++R ++ +SAT P +K+ V+ ++++ +
Sbjct: 152 VVLDEADEMLSMGFIDDVKTILRKTPPTRQ----TACFSATMPREIKELVNQFLNDPALV 207
Query: 481 XLMKELSLIG--IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + S Q Y + K L+ +L + + IIF L ++ +
Sbjct: 208 TVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDPESAIIFVRTKQTAADLTSRLQE 267
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
G H + Q +R ++ H F +
Sbjct: 268 AGHSVDEYHGNLSQSQRERLVHRFRDG--------------------------------- 294
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K++V +D+ RG+D N++ V+NF+
Sbjct: 295 --------------KIKLVVATDIAARGLDVNNLSHVVNFD 321
>gi|4409804|gb|AAD20136| (AF091502) autoaggregation-mediating protein [Lactobacillus
reuteri]
Length = 497
Score = 49.2 bits (115), Expect = 3e-05
Identities = 36/145 (24%), Positives = 72/145 (48%), Gaps = 1/145 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML++ F +I+ +I+ +++ L+SAT P +K +M + +
Sbjct: 147 LVLDEADEMLNMGFLEDIESIIKETPDDRQTL----LFSATMPPEIKRIGVQFMSDPETV 202
Query: 481 XLM-KELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ KEL+ + Q+Y EK + L++ + I+F V+ L+ +
Sbjct: 203 RIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIAR 262
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSES 227
G+ + IH + Q++R+K+ F +
Sbjct: 263 GYNAAGIHGDLTQDKRSKIMWKFKNN 288
>gi|3122595|sp|Q92841|P72_HUMAN PROBABLE RNA-DEPENDENT HELICASE P72 (DEAD-BOX PROTEIN P72)
>gi|1592565 (U59321) DEAD-box protein p72 [Homo sapiens]
>gi|2832596|emb|CAB09792| (Z97056) dJ434P1.3 [Homo
sapiens]
Length = 650
Score = 48.8 bits (114), Expect = 3e-05
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 6/220 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ + +++ ++SAT+P V+ ++ + I
Sbjct: 243 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL----MWSATWPKEVRQLAEDFLRDYTQI 298
Query: 481 XLMKELSLIGIYQFYALVDI---KEKLHCLKTLLNKI---EFKQCIIFCNNVNNVELLAM 320
+ L L + +VD+ EK H L L+ +I + + IIF + L
Sbjct: 299 N-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTR 357
Query: 319 KVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXX 140
++ G+P+ IH Q ER+ V + F
Sbjct: 358 RMRRDGWPAMCIHGDKSQPERDWVLNEFRSG----------------------------- 388
Query: 139 XXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
IL+ +D+ +RG+D ++V VIN+++
Sbjct: 389 ------------------KAPILIATDVASRGLDVEDVKFVINYDY 416
>gi|1658275 (U74626) ATP dependent RNA helicase [Neurospora crassa]
Length = 92
Score = 48.4 bits (113), Expect = 5e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 469 ELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGFPSY 290
+L+L G+ Q+Y ++ +EK L LL++++F Q IIF + L + + FPS
Sbjct: 9 KLTLHGLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTLRATELDKLLRECNFPSI 68
Query: 289 YIHSKMKQEER 257
+HS + QEER
Sbjct: 69 AVHSGVSQEER 79
>gi|2443870 (AC002985) R27090_2 [Homo sapiens]
Length = 483
Score = 48.4 bits (113), Expect = 5e-05
Identities = 37/145 (25%), Positives = 70/145 (47%), Gaps = 8/145 (5%)
Query: 661 MVFDEADKMLS---VEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNI 491
+V DEAD++L +F +++ ++ + ++ L+SAT +++ + +
Sbjct: 149 LVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTL----LFSATLTDTLRELQGLATNQP 204
Query: 490 CYIXLMKELSLIG-IYQFYALVDIKEK----LHCLKTLLNKIEFKQCIIFCNNVNNVELL 326
+ +S + + Q Y LV K K +H ++ ++ E IIF N ++L
Sbjct: 205 FFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQIL 264
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSES 227
M + FP+ +HS MKQ+ER F S
Sbjct: 265 CMMLRKFSFPTVALHSMMKQKERFAALAKFKSS 297
>gi|1352826|sp|P09052|VASA_DROME VASA PROTEIN >gi|1054723|emb|CAA31405| (X12945) vasa [Drosophila
melanogaster]
Length = 661
Score = 48.0 bits (112), Expect = 6e-05
Identities = 43/219 (19%), Positives = 92/219 (41%), Gaps = 8/219 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ ++M + + ++ +SATFP ++ ++ N +
Sbjct: 396 VVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLM--FSATFPEEIQRMAGEFLKNYVSV 453
Query: 481 XLMKELSLIGIYQFYALVDIKEKLH-----CLKTLLNKIEFKQC---IIFCNNVNNVELL 326
+ ++G A D+K+ ++ ++ L +I +Q I+F + L
Sbjct: 454 AI----GIVG----GACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFL 505
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXX 146
A +++ FP+ IH Q +R + +F
Sbjct: 506 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--------------------------- 538
Query: 145 XXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K+L+ + + +RG+D KN+ VIN++
Sbjct: 539 --------------------SMKVLIATSVASRGLDIKNIKHVINYD 565
>gi|2558535|emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Danio rerio]
Length = 700
Score = 48.0 bits (112), Expect = 6e-05
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F ++ L+ M KEK ++SAT+P ++ + ++ + YI
Sbjct: 416 LVLDEADRMLDMGFEPEMRKLVASPGMPSKEKRQTLMFSATYPEDIQRMAADFL-KVDYI 474
Query: 481 XLMKELSLIG-----IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
L + ++G + Q VD K L LL ++ ++F + + +A
Sbjct: 475 FL--AVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATF 532
Query: 316 VTDMGFPSYYIHSKMKQEERNKVFHNF 236
+ + IH +Q ER K +F
Sbjct: 533 LCQEKISTTSIHGDREQREREKALSDF 559
>gi|3288677|dbj|BAA31233| (D89592) rhlE [Vibrio alginolyticus]
Length = 411
Score = 48.0 bits (112), Expect = 6e-05
Identities = 39/142 (27%), Positives = 63/142 (43%), Gaps = 1/142 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEADKML + F +I +I + E + L+SAT + V+D + + I
Sbjct: 151 LVLDEADKMLDMGFIDSIDKIIDCMP----EDVQSLLFSATLSNPVRDLAKNAIVDPEEI 206
Query: 481 XLMKE-LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ K S I Q+ VD K L +LN+ ++ Q +IF + L ++
Sbjct: 207 TIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQVLIFIETKHGAAKLVSQLEKR 266
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
G + HS Q R ++ F
Sbjct: 267 GIVAEAFHSGRNQRVRQELIEKF 289
>gi|4126714|dbj|BAA36710| (AB016603) DEAD-Box Protein [Ciona intestinalis]
Length = 669
Score = 47.6 bits (111), Expect = 8e-05
Identities = 33/142 (23%), Positives = 64/142 (44%), Gaps = 4/142 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DEAD+ML + F I+ L+ L M +K ++SATFP ++ ++
Sbjct: 368 IILDEADRMLDMGFESEIRKLVSLPGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLF 427
Query: 481 XLMKEL--SLIGIYQFYALVDIKEKLHCLKTLLNKIE--FKQCIIFCNNVNNVELLAMKV 314
+ + + + Q V+ K+K L L+ + + ++F + LA +
Sbjct: 428 LTVGRVGGACSDVTQTVISVEWKDKRSKLLELIADVNETKSRTLVFVETKRGADFLACVL 487
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNF 236
FP+ IH Q++R + +F
Sbjct: 488 CQEDFPTTSIHGDRLQQDREQALRDF 513
>gi|4126716|dbj|BAA36711| (AB016604) DEAD-Box Protein [Ciona intestinalis]
Length = 659
Score = 47.6 bits (111), Expect = 8e-05
Identities = 33/142 (23%), Positives = 64/142 (44%), Gaps = 4/142 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DEAD+ML + F I+ L+ L M +K ++SATFP ++ ++
Sbjct: 358 IILDEADRMLDMGFESEIRKLVSLPGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLF 417
Query: 481 XLMKEL--SLIGIYQFYALVDIKEKLHCLKTLLNKIE--FKQCIIFCNNVNNVELLAMKV 314
+ + + + Q V+ K+K L L+ + + ++F + LA +
Sbjct: 418 LTVGRVGGACSDVTQTVISVEWKDKRSKLLELIADVNETKSRTLVFVETKRGADFLACVL 477
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNF 236
FP+ IH Q++R + +F
Sbjct: 478 CQEDFPTTSIHGDRLQQDREQALRDF 503
>gi|3149952|dbj|BAA28347| (AB010259) DRH1 [Arabidopsis thaliana]
Length = 619
Score = 47.3 bits (110), Expect = 1e-04
Identities = 50/220 (22%), Positives = 88/220 (39%), Gaps = 4/220 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ +++ + ++ +Y+AT+P V+ + + N +
Sbjct: 308 LVLDEADRMLDMGFEPQIRKIVKEIPTKRQTL----MYTATWPKGVRKIAADLLVNPAQV 363
Query: 481 XLMKELSLI---GIYQFYALVDIKEKLHCLKTLLNKIE-FKQCIIFCNNVNNVELLAMKV 314
+ L+ I Q +V EK L+ +L E + IIFC+ + L +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNL 423
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
T F + IH Q ER+ V + F RT
Sbjct: 424 TRQ-FGAAAIHGDKSQPERDNVLNQFRSG--------------RT--------------- 453
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
+LV +D+ RG+D K++ V+N++F
Sbjct: 454 ------------------PVLVATDVAARGLDVKDIRAVVNYDF 479
>gi|3776029|emb|CAA09215| (AJ010476) RNA helicase [Arabidopsis thaliana]
Length = 263
Score = 47.3 bits (110), Expect = 1e-04
Identities = 46/220 (20%), Positives = 88/220 (39%), Gaps = 4/220 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ + +++ L+SAT+P V+ ++ + Y
Sbjct: 60 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL----LWSATWPREVETLARQFLRDP-YK 114
Query: 481 XLMKELSLIG---IYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKV 314
++ L I Q +V EK + L TLL ++ + + +IF + + ++
Sbjct: 115 AIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQL 174
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
G+P+ IH Q ER++V F
Sbjct: 175 RMDGWPALAIHGDKTQSERDRVLAEFKSGRS----------------------------- 205
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
I+ +D+ RG+D K++ V+N++F
Sbjct: 206 ------------------PIMTATDVAARGLDVKDIKCVVNYDF 231
>gi|407992 (L25125) RNA helicase [Mus musculus]
Length = 478
Score = 47.3 bits (110), Expect = 1e-04
Identities = 51/218 (23%), Positives = 84/218 (38%), Gaps = 2/218 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD M++ + + I+ + + + L+SATF V F + + I
Sbjct: 239 VLDEADVMIATQGHQDQSIRIQRIVPRNCQML---LFSATFEDSVWKFAQKVVPDPNIIK 295
Query: 478 LMKELSLIG-IYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
L +E + I Q+Y L + +E K L L I Q +IFC+ LA +++
Sbjct: 296 LKREEETLDTIKQYYVLCNNREEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE 355
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
G + +M E+R V F E +
Sbjct: 356 GHQVALLSGEMMVEQRAAVIERFREGKE-------------------------------- 383
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K+LV +++ RGID + V++VINF+
Sbjct: 384 ---------------KVLVTTNVCARGIDVEQVSVVINFD 408
>gi|133134|sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE P62 >gi|103357|pir||S11485 RNA
helicase - fruit fly (Drosophila melanogaster)
>gi|8444|emb|CAA37037| (X52846) RNA helicase [Drosophila
melanogaster]
Length = 575
Score = 47.3 bits (110), Expect = 1e-04
Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 8/220 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ + +++ ++SAT+P VK ++ N I
Sbjct: 288 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL----MWSATWPKEVKQLAEDFLGNYIQI 343
Query: 481 XLMKELSLIGIYQFYALVDIKE---KLHCLKTLLNKI-----EFKQCIIFCNNVNNVELL 326
+ L L + +VD+ + K LKTLL+ I + IIF V+ L
Sbjct: 344 NI-GSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNL 402
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXX 146
+ G IH Q ER+ V F S K N
Sbjct: 403 VRFIRSFGVRCGAIHGDKSQSERDFVLREF-RSGKSN----------------------- 438
Query: 145 XXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
ILV +D+ RG+D + VINF++
Sbjct: 439 -----------------------ILVATDVAARGLDVDGIKYVINFDY 463
>gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-family (deaD)
[Archaeoglobus fulgidus]
Length = 368
Score = 46.9 bits (109), Expect = 1e-04
Identities = 31/145 (21%), Positives = 67/145 (45%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+ML + F +I+ ++R ++ + ++SAT P V YM + +
Sbjct: 155 VLDEADRMLDMGFIDDIERILRHAGAERR----VLMFSATMPPEVLRLARRYMRDYEVVR 210
Query: 478 LMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGF 299
+ +++ + V+ +++ L +L++ F I+FC L ++ G+
Sbjct: 211 VHSKITPENVEHRCLKVNPEKRFEHLCRILDENNF-YGIVFCQTKKETRELGRRLRARGY 269
Query: 298 PSYYIHSKMKQEERNKVFHNFSESY 224
+ ++ + Q +R + NF + Y
Sbjct: 270 KADALNGDIPQHKRESILRNFRKGY 294
>gi|1173121|sp|P45818|ROK1_YEAST ATP-DEPENDENT RNA HELICASE ROK1 >gi|2131186|pir||S59649
ATP-dependent RNA helicase ROK1 - yeast (Saccharomyces
cerevisiae) >gi|607182|emb|CAA84384| (Z34901)
ATP-dependent RNA helicase [Saccharomyces cerevisiae]
>gi|971382|emb|CAA59758| (X85757) putative ATP dependent
RNA helicase [Saccharomyces cerevisiae]
>gi|1322774|emb|CAA96883| (Z72693) ORF YGL171w
[Saccharomyces cerevisiae]
Length = 564
Score = 46.9 bits (109), Expect = 1e-04
Identities = 51/219 (23%), Positives = 90/219 (40%), Gaps = 3/219 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFV-SMYMHNICY 485
++FDEADK+ F ++ +LS ++ + ++SAT PS V++ S+ M +
Sbjct: 277 LIFDEADKLFDKTF---VEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMMDPVRV 333
Query: 484 IXLMKELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFK-QCIIFCNNVNNVELLAMKVT 311
I KE + I Q +E KL ++ L+ + EFK IIF ++ + L ++
Sbjct: 334 IIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKALYHELM 393
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXX 131
IH++ +R+++ F +
Sbjct: 394 YDRINVDVIHAERTALQRDRIIERFKTGELW----------------------------- 424
Query: 130 XXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
L+C+D++ RGID K VNLVIN++
Sbjct: 425 ------------------CLICTDVLARGIDFKGVNLVINYD 448
>gi|2463519|dbj|BAA22535| (AB005147) vas [Danio rerio]
Length = 716
Score = 46.5 bits (108), Expect = 2e-04
Identities = 36/142 (25%), Positives = 67/142 (46%), Gaps = 5/142 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F ++ L+ M KE+ ++SAT+P ++ + ++ + YI
Sbjct: 432 LVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFL-KVDYI 490
Query: 481 XLMKELSLIG-----IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
L + ++G + Q VD K L LL ++ ++F + + +A
Sbjct: 491 FL--AVGVVGGACSDVEQTVVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATF 548
Query: 316 VTDMGFPSYYIHSKMKQEERNKVFHNF 236
+ + IH +Q ER K +F
Sbjct: 549 LCQEKISTTSIHGDREQREREKALSDF 575
>gi|2500525|sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLOG) (MVH) >gi|2137271|pir||I49638
Drosophila vasa homologue - mouse (fragment)
>gi|286075|dbj|BAA03584| (D14859) Drosophila vasa
homologue [Mus musculus]
Length = 637
Score = 46.1 bits (107), Expect = 2e-04
Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD ML + F IK LI M KE+ L+SATFP ++ ++ +
Sbjct: 357 LVLDEADSMLDMGFAPEIKKLISCPGMPSKEQHQTLLFSATFPEEIQRLAGDFLKSNYLF 416
Query: 481 XLMKEL--SLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ ++ + + Q V +K L I ++ ++F + +A +
Sbjct: 417 VAVGQVGGACRDVQQTILQVGQYQKEKSLLRFYENIGDERTMVFVETKKKADFIATFLCQ 476
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
S IH +Q ER + +F
Sbjct: 477 EKISSTSIHGDREQREREQALGDF------------------------------------ 500
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
C +LV + + RG+D +NV VINF+
Sbjct: 501 -----------RCGKCPVLVATSVAARGLDIENVQHVINFD 530
>gi|1707017 (U78721) RNA helicase isolog [Arabidopsis thaliana]
Length = 733
Score = 46.1 bits (107), Expect = 2e-04
Identities = 40/149 (26%), Positives = 72/149 (47%), Gaps = 16/149 (10%)
Query: 661 MVFDEADKMLSVEFXXNIKYLI------RLLSMNKKEKI-------ILELYSATFPSVVK 521
+V DEAD+M+ + F + ++ L N++E++ ++SAT P V+
Sbjct: 467 VVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVE 526
Query: 520 DFVSMYMHNICYIXLM---KELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCN 350
Y+ N + + K LI Q ++ EK L+ LL+++ K I+F N
Sbjct: 527 RLARKYLRNPVVVTIGTAGKTTDLIS--QHVIMMKESEKFFRLQKLLDELGEKTAIVFVN 584
Query: 349 NVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYN 215
N + +A + G+ +H QE+R F + +YN
Sbjct: 585 TKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGF-RAKRYN 628
>gi|2088766 (AF003145) strong similarity to the 'DEAD' box family of helicases
[Caenorhabditis elegans] >gi|3386542 (AF079509) germline
RNA helicase-3 [Caenorhabditis elegans]
Length = 720
Score = 46.1 bits (107), Expect = 2e-04
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 661 MVFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICY 485
+V DEAD+M+ S+ F I+ +I +M K +K ++SATFPS V++ +
Sbjct: 453 LVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYT 512
Query: 484 IXLMKELSLIG--IYQFYALVDIKEKLHCLKTLL------------NKIEFKQCIIFCNN 347
+ + ++ + Q + L D K+ L LL + + K+ I+F
Sbjct: 513 MITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQ 572
Query: 346 VNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ LA ++ P+ IH +Q+ER+ F K
Sbjct: 573 QKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAK 614
>gi|1706311|sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP1 (HELICASE CA1)
>gi|2132404|pir||S62003 probable ATP-dependent RNA
helicase DBP1 - yeast (Saccharomyces cerevisiae)
>gi|1163095 (U43503) Dbp1p,Lph8p [Saccharomyces
cerevisiae]
Length = 617
Score = 46.1 bits (107), Expect = 2e-04
Identities = 36/142 (25%), Positives = 60/142 (41%), Gaps = 1/142 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I++++ M E ++SATFP ++ ++ N ++
Sbjct: 315 LVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFL 374
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + S I Q VD +K L LL+ +IF + L +
Sbjct: 375 SVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQ 434
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
F + IH Q ER + F
Sbjct: 435 NFKATAIHGDRTQAERERALSAF 457
>gi|3641|emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae]
Length = 618
Score = 46.1 bits (107), Expect = 2e-04
Identities = 36/142 (25%), Positives = 60/142 (41%), Gaps = 1/142 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I++++ M E ++SATFP ++ ++ N ++
Sbjct: 316 LVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFL 375
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + S I Q VD +K L LL+ +IF + L +
Sbjct: 376 SVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQ 435
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
F + IH Q ER + F
Sbjct: 436 NFKATAIHGDRTQAERERALSAF 458
>gi|118284|sp|P24783|DBP2_YEAST P68-LIKE PROTEIN >gi|83509|pir||S13757 RNA helicase DBP2 - yeast
(Saccharomyces cerevisiae) >gi|5272|emb|CAA36874|
(X52649) p68 protein [Saccharomyces cerevisiae]
>gi|1302034|emb|CAA95991| (Z71388) ORF YNL112w
[Saccharomyces cerevisiae]
Length = 546
Score = 45.7 bits (106), Expect = 3e-04
Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 7/219 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ + +++ ++SAT+P VK + Y+++ +
Sbjct: 264 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL----MWSATWPKEVKQLAADYLNDPIQV 319
Query: 481 XLMKELSLIGIYQFYALVDI------KEKLH-CLKTLLNKIEFKQCIIFCNNVNNVELLA 323
+ L L + +V++ +++L+ L+T E+K +IF + + +
Sbjct: 320 Q-VGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYK-TLIFASTKRMCDDIT 377
Query: 322 MKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXX 143
+ + G+P+ IH Q ER+ V F
Sbjct: 378 KYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS-------------------------- 411
Query: 142 XXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
I+V +D+ RGID K +N VIN++
Sbjct: 412 ---------------------PIMVATDVAARGIDVKGINYVINYD 436
>gi|3775995|emb|CAA09200| (AJ010461) RNA helicase [Arabidopsis thaliana]
Length = 363
Score = 45.7 bits (106), Expect = 3e-04
Identities = 45/219 (20%), Positives = 86/219 (38%), Gaps = 4/219 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML V F +++ +++ L ++ ++SAT PS ++ Y++N I
Sbjct: 19 VVLDEADQMLQVGFAEDVEIILQKLPAKRQSM----MFSATMPSWIRSLTKKYLNNPLTI 74
Query: 481 XLMKELS---LIGIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKV 314
L+ + GI + D + + L+ + + +CI+F + + LA +
Sbjct: 75 DLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGL 134
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
+ +H + Q +R + F +
Sbjct: 135 A-KSYKCEALHGDISQAQRERTLAGFRDG------------------------------- 162
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
ILV +D+ RG+D NV+LVI++E
Sbjct: 163 ----------------NFSILVATDVAARGLDVPNVDLVIHYE 189
>gi|1399945 (U60194) RNA helicase GLH-2 [Caenorhabditis elegans] >gi|1405387
(U60449) GLH-2 [Caenorhabditis elegans]
Length = 974
Score = 45.7 bits (106), Expect = 3e-04
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DEAD+M+ ++ F +I ++ SM KKE ++SATFP V++ ++ +
Sbjct: 708 VLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIM 767
Query: 481 XLMKELSLIG--IYQFYALVDIKEKLHCLKTLL------------NKIEFKQCIIFCNNV 344
+ ++ + Q + D EK L +L +++ K+ I+F +
Sbjct: 768 LAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQR 827
Query: 343 NNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ LA ++ P+ IH +Q ER++ F K
Sbjct: 828 AMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSK 868
>gi|3335268 (L19948) RNA helicase [Caenorhabditis elegans]
Length = 763
Score = 45.3 bits (105), Expect = 4e-04
Identities = 36/146 (24%), Positives = 72/146 (48%), Gaps = 15/146 (10%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DEAD+M+ ++ F +I+ ++ SM +KE ++SATFP V++ ++ +
Sbjct: 497 VLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVM 556
Query: 481 XLMKELSLIG--IYQFYALVDIKEKLHCLKTLLN------------KIEFKQCIIFCNNV 344
+ ++ + Q + + EK L LL ++ K+ ++F +
Sbjct: 557 IAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQR 616
Query: 343 NNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
++LA ++ P+ IH +Q ER++ F K
Sbjct: 617 AMADILASILSSAQVPAITIHGAREQRERSEALRQFRNGSK 657
>gi|2558968 (AF025536) suppressor of uncontrolled mitosis [Schizosaccharomyces
pombe] >gi|3080516|emb|CAA18646| (AL022598) suppressor
of uncontrolled mitosis [Schizosaccharomyces pombe]
>gi|3514095 (AF084222) putative DEAD box RNA helicase
Dep1 [Schizosaccharomyces pombe]
Length = 636
Score = 45.3 bits (105), Expect = 4e-04
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I++++ M E+ ++SATFP ++ ++ + ++
Sbjct: 333 LVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFL 392
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFK-QCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ EK L +L+ + + +IF + L + +
Sbjct: 393 SVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLN 452
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
FP+ IH Q ER + F
Sbjct: 453 SNFPATSIHGDRTQRERERALELF 476
>gi|2992158|dbj|BAA25324| (AB012389) Moc2 RNA helicase [Schizosaccharomyces pombe]
Length = 636
Score = 45.3 bits (105), Expect = 4e-04
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I++++ M E+ ++SATFP ++ ++ + ++
Sbjct: 333 LVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFL 392
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFK-QCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ EK L +L+ + + +IF + L + +
Sbjct: 393 SVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLN 452
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
FP+ IH Q ER + F
Sbjct: 453 SNFPATSIHGDRTQRERERALELF 476
>gi|462179|sp|P34689|GLH1_CAEEL ATP-DEPENDENT RNA HELICASE GLH-1 >gi|539422|pir||A48686 probable
RNA helicase glh-1 - Caenorhabditis elegans
Length = 707
Score = 45.3 bits (105), Expect = 4e-04
Identities = 36/146 (24%), Positives = 72/146 (48%), Gaps = 15/146 (10%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DEAD+M+ ++ F +I+ ++ SM +KE ++SATFP V++ ++ +
Sbjct: 441 VLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVM 500
Query: 481 XLMKELSLIG--IYQFYALVDIKEKLHCLKTLLN------------KIEFKQCIIFCNNV 344
+ ++ + Q + + EK L LL ++ K+ ++F +
Sbjct: 501 IAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQR 560
Query: 343 NNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
++LA ++ P+ IH +Q ER++ F K
Sbjct: 561 AMADILASILSSAQVPAITIHGAREQRERSEALRQFRNGSK 601
>gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema pallidum]
Length = 649
Score = 45.3 bits (105), Expect = 4e-04
Identities = 32/141 (22%), Positives = 68/141 (47%), Gaps = 1/141 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI- 482
+ DEAD+ML++ F +I+ + NK +++ ++SAT P + S +M + +
Sbjct: 194 ILDEADEMLNMGFVEDIESIFS--HANKDARVL--MFSATMPRQILSIASTFMGSYEVVE 249
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
+ E + I QF +V +K+ L L++ + ++FC + + +A + +
Sbjct: 250 EVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADTVAKSLDERH 309
Query: 301 FPSYYIHSKMKQEERNKVFHNF 236
+ +H + Q +R K+ F
Sbjct: 310 YHVAALHGDIPQSQREKILERF 331
>gi|3108197 (AF005239) DEAD-box helicase [Drosophila melanogaster]
Length = 460
Score = 45.3 bits (105), Expect = 4e-04
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 2/156 (1%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD M++ + + IR+ M +L +SAT+ V DF + + + I
Sbjct: 221 VLDEADVMIATQGHHD--QCIRIHKMLNPHCQML-FFSATYGKEVMDFARLIVADPTIIR 277
Query: 478 LMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
LM+ E SL I Q+Y +E K + ++ + I Q IIFC+ LA K+T
Sbjct: 278 LMREEESLENIKQYYVKCKNEEGKYNAIQNIYGCISVGQAIIFCHTKRTAAWLAAKMTSD 337
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVS 191
G + + +R V F + NI+S
Sbjct: 338 GHSVAVLTGDLTVVQRLDVLDRFRSGLEKVLITTNILS 375
>gi|3776031|emb|CAA09216| (AJ010477) RNA helicase [Arabidopsis thaliana]
Length = 295
Score = 44.9 bits (104), Expect = 5e-04
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 17/145 (11%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD +L + F +I+ R++S KE+ L+SAT P V+ IC +
Sbjct: 82 LVLDEADHLLDMGFRKDIE---RIISAVPKERQTF-LFSATVPEEVRQ--------ICLV 129
Query: 481 XLMKELSLIG------------IYQFYALVDIKEKLHCLKTLLNK-----IEFKQCIIFC 353
L ++ + + Q + + + L TLL + +++K I+FC
Sbjct: 130 ALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYK-VIVFC 188
Query: 352 NNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSES 227
+L+A + ++ IHS+ Q R +V + F +S
Sbjct: 189 TTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKS 230
>gi|1169228|sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 >gi|1084413|pir||S42639
helicase-like protein - Wood tobacco
>gi|563986|dbj|BAA03763| (D16247) RNA helicase like
protein DB10 [Nicotiana sylvestris]
Length = 607
Score = 44.9 bits (104), Expect = 5e-04
Identities = 48/220 (21%), Positives = 89/220 (39%), Gaps = 4/220 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ +++ + + ++ +Y+AT+P V+ + + N +
Sbjct: 295 LVLDEADRMLDMGFEPQIRKIVKEVPVQRQTL----MYTATWPKGVRKIAADLLVNSVQV 350
Query: 481 XLMKELSLI---GIYQFYALVDIKEKLHCLKTLL-NKIEFKQCIIFCNNVNNVELLAMKV 314
+ L+ I Q +V EK ++ +L +K + IIFC+ + L+ +
Sbjct: 351 NIGNVDELVANKSITQHIEVVLPMEKQRRVEQILRSKEPGSKIIIFCSTKKMCDQLSRNL 410
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
T F + IH Q ER+ V F
Sbjct: 411 T-RNFGAAAIHGDKSQGERDYVLSQFRAGRS----------------------------- 440
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
+LV +D+ RG+D K++ +VIN++F
Sbjct: 441 ------------------PVLVATDVAARGLDIKDIRVVINYDF 466
>gi|4559339|gb|AAD23001|AC007087_20 (AC007087) putative ATP-dependent RNA helicase [Arabidopsis
thaliana]
Length = 633
Score = 44.5 bits (103), Expect = 7e-04
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DEAD+ML + F I+ ++ + M + L+SATFP ++ + ++ N ++
Sbjct: 315 LALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFL 374
Query: 481 XLMKELSL--IGIYQFYALVDIKEKLHCLKTL----LNKIEFKQC--IIFCNNVNNVELL 326
+ + S + + + ++D ++ H + L N I+ KQ ++F + L
Sbjct: 375 AVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSL 434
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNF 236
+ GFP+ IH Q+ER F
Sbjct: 435 ENWLCINGFPATSIHGDRTQQEREVALKAF 464
>gi|2558533|emb|CAA73349| (Y12819) putative RNA helicase (DEAD box) [Danio rerio]
Length = 688
Score = 44.5 bits (103), Expect = 7e-04
Identities = 47/219 (21%), Positives = 79/219 (35%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ + ++
Sbjct: 376 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFL 435
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 436 AVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYR 495
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
G+ IH Q +R + H F
Sbjct: 496 EGYACTSIHGDRSQRDREEALHQFRSG--------------------------------- 522
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
C ILV + + RG+D NV VINF+
Sbjct: 523 --------------RCPILVATAVAARGLDISNVKHVINFD 549
>gi|1438969 (U62772) RNA helicase [Caenorhabditis elegans]
Length = 763
Score = 44.1 bits (102), Expect = 9e-04
Identities = 36/146 (24%), Positives = 71/146 (47%), Gaps = 15/146 (10%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DEAD+M+ ++ F +I+ ++ SM +KE ++SATFP V++ ++ +
Sbjct: 497 VLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVM 556
Query: 481 XLMKELSLIG--IYQFYALVDIKEKLHCLKTLLN------------KIEFKQCIIFCNNV 344
+ ++ + Q + + EK L LL ++ K+ ++F +
Sbjct: 557 IAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQR 616
Query: 343 NNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ LA ++ P+ IH +Q ER++ F K
Sbjct: 617 AMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSK 657
>gi|1947009 (AF000197) C. elegans ATP-dependent RNA helicase GLH-1 (SP:P34689,
NID:g976162); partial CDS, this gene begins in the
neighboring clone [Caenorhabditis elegans]
Length = 604
Score = 44.1 bits (102), Expect = 9e-04
Identities = 36/146 (24%), Positives = 71/146 (47%), Gaps = 15/146 (10%)
Query: 658 VFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
V DEAD+M+ ++ F +I+ ++ SM +KE ++SATFP V++ ++ +
Sbjct: 338 VLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVM 397
Query: 481 XLMKELSLIG--IYQFYALVDIKEKLHCLKTLLN------------KIEFKQCIIFCNNV 344
+ ++ + Q + + EK L LL ++ K+ ++F +
Sbjct: 398 IAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQR 457
Query: 343 NNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ LA ++ P+ IH +Q ER++ F K
Sbjct: 458 AMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSK 498
>gi|3775989|emb|CAA09197| (AJ010458) RNA helicase [Arabidopsis thaliana]
Length = 411
Score = 43.8 bits (101), Expect = 0.001
Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 6/220 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F ++++ L + NK +++ ++SAT+P V +M
Sbjct: 143 VVLDEADRMLDMGFEEPVRFI--LSNTNKVRQMV--MFSATWPLDVHKLAQEFMDPNPIK 198
Query: 481 XLMKELSLIGIYQFYALVDI------KEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAM 320
++ + L + ++++ ++L L +K + + ++F E L
Sbjct: 199 VIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLER 258
Query: 319 KVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXX 140
+ G+ + IH Q ER + F E
Sbjct: 259 FLQQRGWKAVSIHGNKAQSERTRSLSLFKEG----------------------------- 289
Query: 139 XXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C +LV +D+ RG+D +V +VIN+ F
Sbjct: 290 ------------------SCPLLVATDVAARGLDIPDVEVVINYTF 317
>gi|4490563|emb|CAB38639| (Y17287) RNA helicase [Plasmodium falciparum]
Length = 180
Score = 43.8 bits (101), Expect = 0.001
Identities = 37/146 (25%), Positives = 69/146 (46%), Gaps = 1/146 (0%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD+++ + F ++ + S N+++ + L+SAT P +++F + N I
Sbjct: 1 VLDEADRLIDLGFEEEVRNTLDHFS-NQRQTL---LFSATMPKKIQEFAKSTLVNPIIIN 56
Query: 478 LMKE-LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMG 302
+ + + + + Q V + KL L +L K +IFC N +V+ + + G
Sbjct: 57 VGRAGAANLDVIQEVEYVKEEFKLSYLLEVLQKTG-PPVLIFCENKKDVDDVHEYLLLKG 115
Query: 301 FPSYYIHSKMKQEERNKVFHNFSESYK 221
+ IH + Q ER + + F E K
Sbjct: 116 VNAVAIHGNLGQSERQEAINLFREGKK 142
>gi|2500526|sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG) (RVLG) >gi|1083795|pir||JC2534
RVLG protein - rat >gi|806464|bbs|159938 (S75275)
vasa-like gene protein, RVLG protein=putative DEAD box
protein [rats, Wistar-Imanishi, testis, Peptide, 713 aa]
[Rattus sp.]
Length = 713
Score = 43.8 bits (101), Expect = 0.001
Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 2/218 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +K LI M KE+ L+SATFP ++ ++ +
Sbjct: 428 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLF 487
Query: 481 XLMKEL--SLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ ++ + + Q V K L +L I ++ ++F + +A +
Sbjct: 488 VAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQ 547
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
+ IH +Q ER + +F
Sbjct: 548 EKISTTSIHGDREQREREQALGDF------------------------------------ 571
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINF 8
C +LV + + RG+D +NV VINF
Sbjct: 572 -----------RCGKCPVLVATSVAARGLDIENVQHVINF 600
>gi|134878|sp|P21507|SRMB_ECOLI ATP-DEPENDENT RNA HELICASE SRMB >gi|42996|emb|CAA32364| (X14152)
SrmB protein [Escherichia coli] >gi|285777|dbj|BAA02447|
(D13169) putative ATP dependent RNA helicase
[Escherichia coli] >gi|987650|dbj|BAA10922| (D64044)
putative ATP dependent RNA helicase [Escherichia coli]
>gi|1788930 (AE000344) ATP-dependent RNA helicase
[Escherichia coli]
Length = 444
Score = 43.8 bits (101), Expect = 0.001
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPS-VVKDFVSMYMHNICY 485
++ DEAD+ML + F +I+++ K+ L+SAT ++DF + +
Sbjct: 154 LILDEADRMLDMGFAQDIEHIAGETRWRKQTL----LFSATLEGDAIQDFAERLLEDPVE 209
Query: 484 IXL---MKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
+ +E I + +Y D++ K L LL + E + I+F V LA +
Sbjct: 210 VSANPSTRERKKIHQW-YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWL 268
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSE 230
+ G + Y+ +M Q +RN+ +E
Sbjct: 269 REAGINNCYLEGEMVQGKRNEAIKRLTE 296
>gi|2313340|gb|AAD07315| (AE000544) ATP-dependent RNA helicase, DEAD-box family (deaD)
[Helicobacter pylori 26695]
Length = 492
Score = 43.4 bits (100), Expect = 0.002
Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DE+D+ML + F +I+ + L + + L+SAT P +K + N I
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLPSEAQ----ILLFSATMPEPIKRLADKILENPIKI 220
Query: 481 XLM-KELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ ++ I Q + +++ E+ + LL+ K+ I+F + L +
Sbjct: 221 HIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASK 280
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSES 227
+ S +H M Q +R F ++
Sbjct: 281 NYKSTALHGDMDQRDRRSSIMAFKKN 306
>gi|4493977|emb|CAB39036| (AL034559) predicted using hexExon; MAL3P7.20 (PFC0955c),
ATP-dependent RNA Helicase, len: 647 aa; Similarity to
ATP-dependent RNA helicases. C.elegans ATP-dependent RNA
helicase (TR:Q93382) BLAST Score: 282, sum P(2) =
4.9e-...
Length = 646
Score = 43.4 bits (100), Expect = 0.002
Identities = 54/219 (24%), Positives = 89/219 (39%), Gaps = 5/219 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DE D + S +F +L+ + N + I ++S+ + V Y+ N YI
Sbjct: 426 VIVDEFDLLFSKQFV----HLVTSVLKNIRTDSIKGMFSSMVSEPMYGLVKTYL-NKKYI 480
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFK-QCIIFCNNVNNVELLAMKVTDM 305
L E IY+ + +++ K + L + K K Q IFCN+ NV LL K+
Sbjct: 481 TLKIENKYSMIYEKFYILEECSKYNYLIDNIKKCSDKGQGFIFCNSKKNVMLLYDKLKKE 540
Query: 304 GFPSY----YIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXX 137
+Y +I+ + Q ER YKY + N +
Sbjct: 541 RSFNYISFDFIYGDLLQNER---------IYKYEKLKNKKTN------------------ 573
Query: 136 XXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
IL+ +DL++RGID N+N VIN++
Sbjct: 574 --------------------ILITTDLMSRGIDLINLNFVINYD 597
>gi|227525|prf||1705301A ATP dependent RNA helicase [Xenopus laevis]
Length = 697
Score = 43.4 bits (100), Expect = 0.002
Identities = 34/142 (23%), Positives = 62/142 (42%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 385 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFL 444
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L + +
Sbjct: 445 AVGRVGSTSENITQKVVWVEEMDKRDFLLDLLNATGKDSLTLVFVETKKGADALEDFLYE 504
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 505 EGYACTSIHGDRSQRDREEALHQF 528
>gi|1183961|emb|CAA93395| (Z69382) RNA elicase [Saccharomyces cerevisiae]
Length = 547
Score = 43.4 bits (100), Expect = 0.002
Identities = 35/142 (24%), Positives = 73/142 (50%), Gaps = 7/142 (4%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ + +++ ++SAT+P VK + Y+++ +
Sbjct: 264 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL----MWSATWPKEVKQLAADYLNDPIQV 319
Query: 481 XLMKELSLIGIYQFYALVDI------KEKLH-CLKTLLNKIEFKQCIIFCNNVNNVELLA 323
+ L L + +V++ +++L+ L+T E+K +IF + + +
Sbjct: 320 Q-VGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYK-TLIFASTKRMCDDIT 377
Query: 322 MKVTDMGFPSYYIHSKMKQEERNKVFHNF 236
+ + G+P+ IH Q ER+ V F
Sbjct: 378 KYLREDGWPALAIHGDKDQRERDWVLQEF 406
>gi|3986285|dbj|BAA34993| (AB017002) DjVLGA [Dugesia japonica]
Length = 726
Score = 43.0 bits (99), Expect = 0.002
Identities = 37/144 (25%), Positives = 62/144 (42%), Gaps = 2/144 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M + ++SATFP ++ S ++ + ++
Sbjct: 369 LVLDEADRMLDMGFEPQIRKIVEQTNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFL 428
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCI-IFCNNVNNVELLAMKVTD 308
+ K S I Q VD EK L +L I+ I +F + L +
Sbjct: 429 RVGKVGSTSQNITQRIVYVDENEKRDHLLDILTDIDSDSLILVFVETKRGADALEGFLHT 488
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
G IH Q +R +F E
Sbjct: 489 EGSCVASIHGDRSQSDRELALQSFRE 514
>gi|3097266|emb|CAA76677| (Y17186) translation initiation factor [Pisum sativum]
Length = 407
Score = 43.0 bits (99), Expect = 0.002
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DE+D+MLS F I + R L + + +I S T P + + + +M + I
Sbjct: 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLI----SRTLPHEILEMTNKFMTDPVRI 234
Query: 481 XLMK-ELSLIGIYQFYALV---DIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
+ + EL+L GI QF+ V D K C+ ++ K + N V+ L K+
Sbjct: 235 LVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMILSPSLK-LLYSVNTKRKVDWLTEKM 293
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNF 236
+ F +H M Q+ER+ + F
Sbjct: 294 RNNNFTVSSMHGDMPQKERDAIMGEF 319
>gi|586550|sp|P38112|MAK5_YEAST ATP-DEPENDENT RNA HELICASE MAK5 >gi|626824|pir||S46011 probable
pre-mRNA-splicing RNA helicase - yeast (Saccharomyces
cerevisiae) >gi|536442|emb|CAA85100| (Z36011) ORF
YBR142w [Saccharomyces cerevisiae]
>gi|547578|emb|CAA55539| (X78937) DEAD box helicase (S)
[Saccharomyces cerevisiae]
Length = 773
Score = 42.6 bits (98), Expect = 0.003
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 364 IIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNF-SESYKYNQNNNNIVSG 188
+IFCN +++V+ L + + ++G P++ IHS M Q+ R K F +S K N++
Sbjct: 467 LIFCNAIDSVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDS 526
Query: 187 VRTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINF 8
V+ +L+ SD+ RG+D V VI++
Sbjct: 527 VQLST--------------------------------VLIASDVAARGLDIPGVQHVIHY 554
>gi|3023628|sp|O00571|DDX3_HUMAN DEAD BOX PROTEIN 3 (HELICASE-LIKE PROTEIN 2) (HLP2) >gi|2148924
(U50553) helicase like protein 2 [Homo sapiens]
>gi|3523150 (AF061337) DEAD box RNA helicase DDX3 [Homo
sapiens] >gi|4503295|ref|NP_001347.1|pDDX3| DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 3
Length = 662
Score = 42.2 bits (97), Expect = 0.003
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 403
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 404 AVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH 463
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 464 EGYACTSIHGDRSQRDREEALHQF 487
>gi|2580550 (AF000982) dead box, X isoform [Homo sapiens] >gi|2580552
(AF000983) dead box, X isoform [Homo sapiens]
Length = 662
Score = 42.2 bits (97), Expect = 0.003
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 403
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 404 AVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH 463
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 464 EGYACTSIHGDRSQRDREEALHQF 487
>gi|113825|sp|P24346|AN3_XENLA PUTATIVE ATP-DEPENDENT RNA HELICASE AN3 >gi|103989|pir||S13654
ATP-dependent RNA helicase - African clawed frog
>gi|65060|emb|CAA40605| (X57328) ATP dependent RNA
helicase [Xenopus laevis]
Length = 697
Score = 42.2 bits (97), Expect = 0.003
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 385 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFL 444
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 445 AVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYH 504
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 505 EGYACTSIHGDRSQRDREEALHQF 528
>gi|4539604|emb|CAB40015| (AL049522) u5 snrnp-like RNA helicase subunit [Schizosaccharomyces
pombe]
Length = 662
Score = 41.8 bits (96), Expect = 0.004
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 22/218 (10%)
Query: 661 MVFDEADKMLSVEFXXNI-KYLIRLLSMNKKEK--IILE------------LYSATFPSV 527
+V DEAD+ML + F ++ K L L S N EK IL ++SAT P
Sbjct: 403 VVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPR 462
Query: 526 VKDFVSMYMHNICYIXLMKELSLIG-----IYQFYALV-DIKEKLHCLKTLLNKIEFKQ- 368
V + Y+ +M + IG + Q ++ D +K ++ +L F
Sbjct: 463 VANLAKSYLIE----PVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPP 518
Query: 367 CIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSG 188
IIF N N+E +A ++ +G+ + +H QE+R +
Sbjct: 519 IIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK------------- 565
Query: 187 VRTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINF 8
ILV +D+ RGID NV+LV+N+
Sbjct: 566 ----------------------------------TADILVATDIAGRGIDIPNVSLVLNY 591
>gi|3776025|emb|CAA09213| (AJ010474) RNA helicase [Arabidopsis thaliana]
Length = 595
Score = 41.8 bits (96), Expect = 0.004
Identities = 37/138 (26%), Positives = 65/138 (46%), Gaps = 17/138 (12%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD +L + F +I+ +I + ++ L+SAT P V+ IC++
Sbjct: 452 LVLDEADHLLDMGFRRDIERIIAAVPKQRQTF----LFSATVPEEVRQ--------ICHV 499
Query: 481 XLMKELSLIG------------IYQFYALVDIKEKLHCLKTLLNK-----IEFKQCIIFC 353
L ++ I + Q Y + + L LL + +++K IIFC
Sbjct: 500 ALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYK-VIIFC 558
Query: 352 NNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKV 248
L+A ++ + IHS+ Q R +V
Sbjct: 559 TTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRV 593
>gi|731740|sp|P38719|DBP8_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP8 >gi|626175|pir||S48908
helicase homolog - yeast (Saccharomyces cerevisiae)
>gi|458901 (U00027) Yhr169wp [Saccharomyces cerevisiae]
Length = 431
Score = 41.8 bits (96), Expect = 0.004
Identities = 45/219 (20%), Positives = 80/219 (35%), Gaps = 9/219 (4%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVS--------- 509
+V DEAD +L+ F ++ I L K + +L ++AT VK +
Sbjct: 152 LVLDEADILLTSTFADHLATCISALPPKDKRQTLL--FTATITDQVKSLQNAPVQKGKPP 209
Query: 508 MYMHNICYIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVEL 329
++ + + + + S + I +KE + E K IIF N E+
Sbjct: 210 LFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEI 269
Query: 328 LAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXX 149
L + + +HS+M Q+ER H F +
Sbjct: 270 LRRTLKQLEVRVASLHSQMPQQERTNSLHRFRAN-------------------------- 303
Query: 148 XXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+IL+ +D+ +RG+D V LV+N++
Sbjct: 304 ---------------------AARILIATDVASRGLDIPTVELVVNYD 330
>gi|3775987|emb|CAA09196| (AJ010457) RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 41.8 bits (96), Expect = 0.004
Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 4/219 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML+V F ++ ++ L ++ L+SAT P+ VK Y+ N I
Sbjct: 256 LVLDEADQMLAVGFEEAVESILENLPTKRQSM----LFSATMPTWVKKLARKYLDNPLNI 311
Query: 481 XLM--KELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFK--QCIIFCNNVNNVELLAMKV 314
L+ ++ L + YA+ + + L + K + I+F + + +++ +
Sbjct: 312 DLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 371
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
++ + +H + Q +R + + F + K+
Sbjct: 372 SN-SIATEALHGDISQHQRERTLNAFRQG-KFT--------------------------- 402
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+LV +D+ +RG+D NV+LVI++E
Sbjct: 403 -------------------VLVATDVASRGLDIPNVDLVIHYE 426
>gi|3047077 (AF058914) contains similarity to the conserved C-terminal domain
of helicases (Pfam: helicase_C.hmm, score: 90.11),
similar to DEAD-box helicases [Arabidopsis thaliana]
Length = 477
Score = 41.8 bits (96), Expect = 0.004
Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 4/219 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML+V F ++ ++ L ++ L+SAT P+ VK Y+ N I
Sbjct: 258 LVLDEADQMLAVGFEEAVESILENLPTKRQSM----LFSATMPTWVKKLARKYLDNPLNI 313
Query: 481 XLM--KELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFK--QCIIFCNNVNNVELLAMKV 314
L+ ++ L + YA+ + + L + K + I+F + + +++ +
Sbjct: 314 DLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL 373
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
++ + +H + Q +R + + F + K+
Sbjct: 374 SN-SIATEALHGDISQHQRERTLNAFRQG-KFT--------------------------- 404
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+LV +D+ +RG+D NV+LVI++E
Sbjct: 405 -------------------VLVATDVASRGLDIPNVDLVIHYE 428
>gi|84894|pir||S01676 ATP-dependent RNA helicase homolog - fruit fly (Drosophila
melanogaster)
Length = 660
Score = 41.8 bits (96), Expect = 0.004
Identities = 41/219 (18%), Positives = 92/219 (41%), Gaps = 8/219 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ ++M + + ++ +SATFP ++ ++ + ++
Sbjct: 396 VVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLM--FSATFPEEIQRMAGEFL-KLRFV 452
Query: 481 XLMKELSLIGIYQFYALVDIKEKLH-----CLKTLLNKIEFKQC---IIFCNNVNNVELL 326
+ ++G D+K+ ++ ++ L +I +Q I+F + L
Sbjct: 453 AI----GIVG----GRCSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFL 504
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXX 146
A +++ FP+ IH Q +R + +F
Sbjct: 505 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--------------------------- 537
Query: 145 XXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K+L+ + + +RG+D KN+ VIN++
Sbjct: 538 --------------------SMKVLIATSVASRGLDIKNIKHVINYD 564
>gi|130256|sp|P16381|PL10_MOUSE PUTATIVE ATP-DEPENDENT RNA HELICASE PL10 >gi|110038|pir||A32378
probable ATP-dependent RNA helicase - mouse >gi|200389
(J04847) PL10 protein [Mus musculus]
Length = 660
Score = 41.8 bits (96), Expect = 0.004
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 402
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 403 AVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYH 462
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 463 EGYACTSIHGDRSQRDREEALHQF 486
>gi|3879543|emb|CAA90406| (Z50071) similar to ATP-dependent helicase; cDNA EST EMBL:D73826
comes from this gene [Caenorhabditis elegans]
Length = 638
Score = 41.8 bits (96), Expect = 0.004
Identities = 38/159 (23%), Positives = 68/159 (41%), Gaps = 3/159 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD M+ + +I I + + + + L+SAT+ V +F + + N +
Sbjct: 383 LVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVV 442
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
L + E +L I QFY ++ K + L + + +IFC+ +V L +
Sbjct: 443 MLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRA 502
Query: 307 MGFPSYYIHSKMKQEER-NKVFHNFSESYKYNQNNNNIVSGV 185
G +H M ER + + H +K N G+
Sbjct: 503 RGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGI 544
>gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori
J99]
Length = 491
Score = 41.8 bits (96), Expect = 0.004
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DE+D+ML + F +I+ + L + + L+SAT P +K + N I
Sbjct: 165 VVLDESDEMLDMGFLDDIEEIFDYLPSEAQ----ILLFSATMPEPIKRLADKILENPIKI 220
Query: 481 XLM-KELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ ++ I Q + +++ E+ + LL+ ++ I+F + L +
Sbjct: 221 HIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASK 280
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSES 227
+ S +H M Q +R F ++
Sbjct: 281 NYKSTALHGDMDQRDRRSSIMAFKKN 306
>gi|3879544|emb|CAA90407| (Z50071) similar to ATP-dependent helicase (DEAD box); cDNA EST
EMBL:D27789 comes from this gene; cDNA EST EMBL:D27790
comes from this gene [Caenorhabditis elegans]
Length = 613
Score = 41.8 bits (96), Expect = 0.004
Identities = 38/159 (23%), Positives = 68/159 (41%), Gaps = 3/159 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD M+ + +I I + + + + L+SAT+ V +F + + N +
Sbjct: 358 LVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVV 417
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
L + E +L I QFY ++ K + L + + +IFC+ +V L +
Sbjct: 418 MLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRA 477
Query: 307 MGFPSYYIHSKMKQEER-NKVFHNFSESYKYNQNNNNIVSGV 185
G +H M ER + + H +K N G+
Sbjct: 478 RGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGI 519
>gi|118411|sp|P06634|DED1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICASE DED1 >gi|82908|pir||S13653
ATP-dependent RNA helicase DED1 - yeast (Saccharomyces
cerevisiae) >gi|3647|emb|CAA40546| (X57278) Ded1p
(Spp81p) [Saccharomyces cerevisiae]
>gi|1420479|emb|CAA99419| (Z75110) ORF YOR204w
[Saccharomyces cerevisiae]
Length = 604
Score = 41.8 bits (96), Expect = 0.004
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I++++ M + ++SATFP+ ++ ++ + ++
Sbjct: 303 LVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFL 362
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + S I Q V+ ++K L LL+ +IF + L +
Sbjct: 363 SVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQ 422
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
F + IH Q ER + F
Sbjct: 423 NFRATAIHGDRTQSERERALAAF 445
>gi|227524|prf||1705300A ATP dependent RNA helicase [Saccharomyces cerevisiae]
Length = 604
Score = 41.8 bits (96), Expect = 0.004
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I++++ M + ++SATFP+ ++ ++ + ++
Sbjct: 303 LVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFL 362
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + S I Q V+ ++K L LL+ +IF + L +
Sbjct: 363 SVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQ 422
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
F + IH Q ER + F
Sbjct: 423 NFRATAIHGDRTQSERERALAAF 445
>gi|3879545|emb|CAA90408| (Z50071) similar to ATP-dependent helicase; cDNA EST EMBL:D37707
comes from this gene; cDNA EST EMBL:D35867 comes from
this gene; cDNA EST EMBL:D37271 comes from this gene;
cDNA EST EMBL:D70447 comes from this gene; cDNA EST EM...
Length = 1022
Score = 41.8 bits (96), Expect = 0.004
Identities = 38/159 (23%), Positives = 68/159 (41%), Gaps = 3/159 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD M+ + +I I + + + + L+SAT+ V +F + + N +
Sbjct: 767 LVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVV 826
Query: 481 XLMK-ELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
L + E +L I QFY ++ K + L + + +IFC+ +V L +
Sbjct: 827 MLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRA 886
Query: 307 MGFPSYYIHSKMKQEER-NKVFHNFSESYKYNQNNNNIVSGV 185
G +H M ER + + H +K N G+
Sbjct: 887 RGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGI 928
>gi|1076832|pir||S53814 DEAD box protein - slime mold (Dictyostelium discoideum) (fragment)
>gi|550329|emb|CAA57417| (X81823) putative RNA helicase
[Dictyostelium discoideum]
Length = 582
Score = 41.4 bits (95), Expect = 0.006
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 2/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHN-ICY 485
+V DEAD+M + F I ++ + +++ ++SATFP V++ ++ +
Sbjct: 176 LVLDEADRMFDMGFGPQINCIVDSIRPDRQ----TIMFSATFPPKVENVAKKILNKPLEI 231
Query: 484 IXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFK-QCIIFCNNVNNVELLAMKVTD 308
I + + I QF + + + L LL+ K Q +IF N + L ++++
Sbjct: 232 IAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSN 291
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
+ +H Q +R++ +F K
Sbjct: 292 SQYQCLSLHGSKDQTDRDETISDFKNKVK------------------------------- 320
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
IL+ + L +RG+D K++NLV+NF+
Sbjct: 321 ----------------TILIATPLASRGLDIKDLNLVVNFD 345
>gi|2072674|emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculosis]
Length = 527
Score = 41.4 bits (95), Expect = 0.006
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 7/219 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +I+ ++R + +++ L+SAT P + +M +I
Sbjct: 176 LVLDEADEMLDLGFLPDIERILRQIPADRQSM----LFSATMPDPIITLARTFMVRPTHI 231
Query: 481 -------XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLA 323
+ + + +Y+ +AL +K+ + +L + +IF + +A
Sbjct: 232 RAEAPHSSAVHDATEQFVYRAHAL----DKVELVSRVLQARDRGATMIFTRTKRTAQKVA 287
Query: 322 MKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXX 143
++T+ GF +H + Q R K F
Sbjct: 288 DELTERGFAVGAVHGDLGQLAREKALKAF------------------------------- 316
Query: 142 XXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
G +LV +D+ RGID +V VIN++
Sbjct: 317 ----------------RTGGIDVLVATDVAARGIDIDDVTHVINYQ 346
>gi|2500528|sp|Q62167|DDX3_MOUSE DEAD BOX PROTEIN 3 (DEAD-BOX RNA HELICASE DEAD2) (EMBRYONIC RNA
HELICASE) >gi|407996 (L25126) RNA helicase [Mus
musculus] >gi|1835122|emb|CAA86261| (Z38117) dead-box
RNA helicase [Mus musculus] >gi|1098036|prf||2115205A
RNA helicase [Mus musculus]
Length = 662
Score = 41.0 bits (94), Expect = 0.008
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 403
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 404 AVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH 463
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 464 EGYACTSIHGDRSQRDREEALHQF 487
>gi|1363226|pir||S56112 RNA helicase (ERH) - mouse
Length = 662
Score = 41.0 bits (94), Expect = 0.008
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 403
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 404 AVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH 463
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 464 EGYACTSIHGDRSQRDREEALHQF 487
>gi|421132|pir||S30675 mmrA protein - Escherichia coli >gi|148184 (M87049) member of DEAD
helicase family [Escherichia coli]
Length = 421
Score = 40.2 bits (92), Expect = 0.013
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+M + F +I++L R M + + L+SAT V++ M+N YI
Sbjct: 162 VVLDEADRMYDLGFIKDIRWLFR--RMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYI 219
Query: 481 XLMKELSL---IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
+ E I FY +EK+ L+TL+ + + IIF N + E + +
Sbjct: 220 EVEPEQKTGHRIKEELFYP--SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA 277
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFS 233
G + + Q++R ++ F+
Sbjct: 278 ADGHRVGLLTGDVAQKKRLRILDEFT 303
>gi|132530|sp|P24229|RHLB_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE RHLB >gi|1790214 (AE000454)
putative ATP-dependent RNA helicase [Escherichia coli]
Length = 421
Score = 40.2 bits (92), Expect = 0.013
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+M + F +I++L R M + + L+SAT V++ M+N YI
Sbjct: 162 VVLDEADRMYDLGFIKDIRWLFR--RMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYI 219
Query: 481 XLMKELSL---IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
+ E I FY +EK+ L+TL+ + + IIF N + E + +
Sbjct: 220 EVEPEQKTGHRIKEELFYP--SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA 277
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFS 233
G + + Q++R ++ F+
Sbjct: 278 ADGHRVGLLTGDVAQKKRLRILDEFT 303
>gi|280089|pir||S23696 probable ATP-dependent RNA helicase - Escherichia coli
Length = 421
Score = 40.2 bits (92), Expect = 0.013
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+M + F +I++L R M + + L+SAT V++ M+N YI
Sbjct: 162 VVLDEADRMYDLGFIKDIRWLFR--RMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYI 219
Query: 481 XLMKELSL---IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
+ E I FY +EK+ L+TL+ + + IIF N + E + +
Sbjct: 220 EVEPEQKTGHRIKEELFYP--SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA 277
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFS 233
G + + Q++R ++ F+
Sbjct: 278 ADGHRVGLLTGDVAQKKRLRILDEFT 303
>gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces pombe]
>gi|3810840|emb|CAA21801| (AL032684) p68-like protein.
[Schizosaccharomyces pombe]
Length = 550
Score = 40.2 bits (92), Expect = 0.013
Identities = 45/220 (20%), Positives = 86/220 (38%), Gaps = 6/220 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ + +++ ++SAT+P V+ Y+++ +
Sbjct: 273 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQ----TVMFSATWPKEVQRLARDYLNDYIQV 328
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIE------FKQCIIFCNNVNNVELLAM 320
+ L L + +V++ + L IE + +IF + +
Sbjct: 329 T-VGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITR 387
Query: 319 KVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXX 140
+ G+P+ IH Q+ER+ V + F RT
Sbjct: 388 FLRQDGWPALAIHGDKAQDERDWVLNEF-----------------RTGKS---------- 420
Query: 139 XXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
I+V +D+ +RGID K + V N++F
Sbjct: 421 --------------------PIMVATDVASRGIDVKGITHVFNYDF 446
>gi|118283|sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|82829|pir||S14048 RNA helicase dbp2 - fission
yeast (Schizosaccharomyces pombe) >gi|5270|emb|CAA36873|
(X52648) p68 protein [Schizosaccharomyces pombe]
Length = 550
Score = 40.2 bits (92), Expect = 0.013
Identities = 45/220 (20%), Positives = 86/220 (38%), Gaps = 6/220 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ + +++ ++SAT+P V+ Y+++ +
Sbjct: 273 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQ----TVMFSATWPKEVQRLARDYLNDYIQV 328
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIE------FKQCIIFCNNVNNVELLAM 320
+ L L + +V++ + L IE + +IF + +
Sbjct: 329 T-VGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITR 387
Query: 319 KVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXX 140
+ G+P+ IH Q+ER+ V + F RT
Sbjct: 388 FLRQDGWPALAIHGDKAQDERDWVLNEF-----------------RTGKS---------- 420
Query: 139 XXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
I+V +D+ +RGID K + V N++F
Sbjct: 421 --------------------PIMVATDVASRGIDVKGITHVFNYDF 446
>gi|554262 (L25337) RNA helicase [Mus musculus]
Length = 245
Score = 40.2 bits (92), Expect = 0.013
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 61 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 120
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 121 AVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQ 180
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ IH Q++R + H F K
Sbjct: 181 ERYACTSIHGDRSQKDREEALHQFRSGRK 209
>gi|1708152|sp|P20449|DBP5_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE DBP5 (HELICASE CA5/6)
>gi|2133053|pir||S66920 probable RNA helicase CA5/6 -
yeast (Saccharomyces cerevisiae) >gi|1353268 (U28135)
Dbp5p [Saccharomyces cerevisiae]
>gi|1420175|emb|CAA99237| (Z74954) ORF YOR046c
[Saccharomyces cerevisiae]
Length = 482
Score = 40.2 bits (92), Expect = 0.013
Identities = 38/143 (26%), Positives = 65/143 (44%), Gaps = 4/143 (2%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIX 479
V DEAD ML + + IR+ K+ ++ L+SATF V+ + + N +
Sbjct: 237 VLDEADNMLDQQGLGD--QCIRVKRFLPKDTQLV-LFSATFADAVRQYAKKIVPNANTLE 293
Query: 478 LM-KELSLIGIYQFYALVDIK---EKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
L E+++ I Q Y +D K +K L L + IIF +L K+
Sbjct: 294 LQTNEVNVDAIKQLY--MDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLK 351
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFSE 230
G +H ++ +ER+++ +F E
Sbjct: 352 SEGHEVSILHGDLQTQERDRLIDDFRE 378
>gi|3790186|emb|CAA07483| (AJ007376) DBY protein [Mus musculus]
Length = 658
Score = 40.2 bits (92), Expect = 0.013
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 402
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L LLN + ++F + L +
Sbjct: 403 AVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQ 462
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ IH Q++R + H F K
Sbjct: 463 ERYACTSIHGDRSQKDREEALHQFRSGRK 491
>gi|1172596|sp|P23394|PR28_YEAST PRE-MRNA SPLICING FACTOR RNA HELICASE PRP28 (HELICASE CA8)
>gi|101502|pir||A39624 probable helicase (EC 3.6.1.-)
PRP28 - yeast (Saccharomyces cerevisiae)
>gi|666103|emb|CAA40255| (X56934) pre-mRNA splicing
factor RNA helicase PRP28 (helicase CA8) [Saccharomyces
cerevisiae] >gi|817829|emb|CAA89729| (Z49701) Prp28p
[Saccharomyces cerevisiae]
Length = 588
Score = 39.5 bits (90), Expect = 0.023
Identities = 49/219 (22%), Positives = 86/219 (38%), Gaps = 6/219 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILE--LYSATFPSVVKDFVSMYMHNIC 488
+V DEADKM+ + F + ++ + +N + + +++AT V++ + YM
Sbjct: 338 LVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPV 397
Query: 487 YIXLMKELS---LIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMK 317
Y + E LI YA D ++K LK ++ K + IIF N + LA K
Sbjct: 398 YATIGVETGSEPLIQQVVEYADND-EDKFKKLKPIVAKYD-PPIIIFINYKQTADWLAEK 455
Query: 316 V-TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXX 140
+ +H QE+R F RT+
Sbjct: 456 FQKETNMKVTILHGSKSQEQREHSLQLF-----------------RTNK----------- 487
Query: 139 XXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+I++ +++ RG+D NV+LV+NF+
Sbjct: 488 -------------------VQIMIATNVAARGLDIPNVSLVVNFQ 513
>gi|226183|prf||1413329A gene vasa [Drosophila melanogaster]
Length = 660
Score = 38.7 bits (88), Expect = 0.039
Identities = 40/219 (18%), Positives = 91/219 (41%), Gaps = 8/219 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ ++M + + + ++SATFP ++ ++ + ++
Sbjct: 396 VVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL--MFSATFPEEIQRMAGEFL-KLRFV 452
Query: 481 XLMKELSLIGIYQFYALVDIKEKL-----HCLKTLLNKIEFKQC---IIFCNNVNNVELL 326
+ ++G D+K+ + + ++ L +I +Q I+F + L
Sbjct: 453 A----IGIVG----GRCSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFL 504
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXX 146
A +++ FP+ I Q +R + +F
Sbjct: 505 ASFLSEKEFPTTSIRGDRLQSQREQALRDFKNG--------------------------- 537
Query: 145 XXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K+L+ + + +RG+D KN+ VIN++
Sbjct: 538 --------------------SMKVLIATSVASRGLDIKNIKHVINYD 564
>gi|3776023|emb|CAA09212| (AJ010473) RNA helicase [Arabidopsis thaliana]
Length = 563
Score = 38.7 bits (88), Expect = 0.039
Identities = 39/145 (26%), Positives = 65/145 (43%), Gaps = 17/145 (11%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD +L + F I+ +I + ++ L+SAT VS + IC++
Sbjct: 239 LVLDEADHLLDMGFRREIERIIAAVPKQRQTF----LFSAT--------VSDEVRQICHV 286
Query: 481 XLMKELSLIG------------IYQFYALVDIKEKLHCLKTLLNK-----IEFKQCIIFC 353
L ++ + + Q Y + + L LL K + +K IIFC
Sbjct: 287 ALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYK-VIIFC 345
Query: 352 NNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSES 227
L+A + + IHS+ Q R +V F +S
Sbjct: 346 TTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKS 387
>gi|1175447|sp|Q09775|YA88_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C22F3.08C
>gi|2130317|pir||S62423 hypothetical protein
SPAC22F3.08c - fission yeast (Schizosaccharomyces pombe)
>gi|1008436|emb|CAA91073| (Z54285) unknown
[Schizosaccharomyces pombe]
Length = 481
Score = 38.3 bits (87), Expect = 0.051
Identities = 48/219 (21%), Positives = 84/219 (37%), Gaps = 3/219 (1%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMY-MHNICYI 482
V DEAD++ F I+ +LS I L+SAT PS V++ + + I I
Sbjct: 194 VMDEADRLFEPGF---IEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRII 250
Query: 481 XLMKELSLIGIYQFYALVDIK-EKLHCLKTLLNKIEFK-QCIIFCNNVNNVELLAMKVTD 308
+K+ + I Q V K+ L+ +++ E K + +IF ++ + L ++
Sbjct: 251 VGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLF 310
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
IH ++ Q +R + F + +
Sbjct: 311 DEIHVGVIHGELPQAKREEALAKFRKGEIW------------------------------ 340
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
+L+ +DL+ RGID V +VINF+F
Sbjct: 341 -----------------VLIATDLLARGIDFHGVKMVINFDF 365
>gi|3800886 (AF099926) contains similarity to DEAD-box helicases (Pfam;
DEAD.hmm, score: 155.68) and helicases conserved
C-terminal domain (Pfam: helicase_C.hmm, score: 57.73)
[Caenorhabditis elegans]
Length = 1031
Score = 38.3 bits (87), Expect = 0.051
Identities = 41/173 (23%), Positives = 65/173 (36%)
Query: 523 KDFVSMYMHNICYIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNV 344
KDF+ ++ I + ++ L GI Q Y + L L +L I + Q ++FC+ +
Sbjct: 266 KDFLPLFP----IIFVSDDVQLFGIKQ-YVVAKCSPMLEKLTHVLKSIRYVQALVFCDQI 320
Query: 343 NNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXX 164
+ E +A + +K + F + + S K Q + + R
Sbjct: 321 SKCEPIA--------------THLKSSGLDVTFVSSAMSQKDRQLAVDQLRAKRV----- 361
Query: 163 XXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
KILV SDL RGID NVNLV+N +
Sbjct: 362 ----------------------------KILVSSDLTARGIDADNVNLVVNID 386
>gi|4104820|gb|AAD02177| (AF040045) DEAD box RNA helicase homolog [Anabaena variabilis]
Length = 425
Score = 38.3 bits (87), Expect = 0.051
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +I+ R+LS+ K++ L L+ ATF +K+ + ++ I
Sbjct: 154 LVLDEADRMLDMGFIRDIR---RILSLLPKQRQNL-LFFATFSDKIKELAAGLLNRPQMI 209
Query: 481 XL-MKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + ++ + Q ++ K L L+ K + Q ++F + L ++
Sbjct: 210 EVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWYQVLVFTRTKYGADRLVKQLGHE 269
Query: 304 GFPSYYIHSKMKQEERNKVFHNF 236
+ IH Q R F
Sbjct: 270 RIQALAIHGNKSQSARTHALAKF 292
>gi|1172924|sp|P44922|RHLB_HAEIN ATP-DEPENDENT RNA HELICASE RHLB HOMOLOG >gi|1073893|pir||E64100
ATP-dependent RNA helicase (rhlB) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573911 (U32771)
ATP-dependent RNA helicase (rhlB) [Haemophilus
influenzae Rd]
Length = 418
Score = 37.9 bits (86), Expect = 0.067
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+M + F +I+YL+R + + L+SAT V++ M+ YI
Sbjct: 164 VVLDEADRMFDLGFIRDIRYLLR--KCPAPQARLTMLFSATLSYKVRELAFEDMNEPEYI 221
Query: 481 XLMKELSL---IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
+ E I FY ++K+ L TL+ ++CI+F N + E + +
Sbjct: 222 EIEPEQKTGHRIKEELFYP--SNQDKMALLLTLMEDEWPERCIVFANTKHRCEEIWGYLA 279
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFSE 230
G + + Q++R + F++
Sbjct: 280 ADGHRVGLLTGDVAQKKRLSLLKQFTD 306
>gi|2580554 (AF000984) dead box, Y isoform [Homo sapiens] >gi|2580556
(AF000985) dead box, Y isoform [Homo sapiens]
Length = 660
Score = 37.9 bits (86), Expect = 0.067
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F I+ ++ +M K ++SATFP ++ ++ ++
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 401
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNKI-EFKQCIIFCNNVNNVELLAMKVTD 308
+ + S I Q V+ +K L +L ++F + L +
Sbjct: 402 AVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYH 461
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
G+ IH Q +R + H F
Sbjct: 462 EGYACTSIHGDRSQRDREEALHQF 485
>gi|171656 (L00683) ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 37.9 bits (86), Expect = 0.067
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 9/219 (4%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML F + ++ LL N++ L+SAT S +K VS+ + I
Sbjct: 352 LVMDEADRMLEEGFQDELNEIMGLLPSNRQNL----LFSATMNSKIKSLVSLSLKKPVRI 407
Query: 481 XL--MKELSLIGIYQFYALVDIKEKLH----CLKTLLNKIE---FKQCIIFCNNVNNVEL 329
+ K+ + +F V I+++ H L L+ K++ K+ ++F
Sbjct: 408 MIDPPKKAATKLTQEF---VRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHR 464
Query: 328 LAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXX 149
L + + +G +H + QE+R + F
Sbjct: 465 LRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKN--------------------------- 497
Query: 148 XXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+L+C+DL +RG+D + +VIN++
Sbjct: 498 --------------------LEVPVLICTDLASRGLDIPKIEVVINYD 525
>gi|1706521|sp|P32892|DRS1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICASE DRS1 >gi|2132405|pir||S64750
probable ATP-dependent RNA helicase DRS1 - yeast
(Saccharomyces cerevisiae) >gi|1360171|emb|CAA97452|
(Z73113) ORF YLL008w [Saccharomyces cerevisiae]
>gi|1495215|emb|CAA62783| (X91488) L1345/DRS1 protein
[Saccharomyces cerevisiae]
Length = 752
Score = 37.9 bits (86), Expect = 0.067
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 9/219 (4%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML F + ++ LL N++ L+SAT S +K VS+ + I
Sbjct: 382 LVMDEADRMLEEGFQDELNEIMGLLPSNRQNL----LFSATMNSKIKSLVSLSLKKPVRI 437
Query: 481 XL--MKELSLIGIYQFYALVDIKEKLH----CLKTLLNKIE---FKQCIIFCNNVNNVEL 329
+ K+ + +F V I+++ H L L+ K++ K+ ++F
Sbjct: 438 MIDPPKKAATKLTQEF---VRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHR 494
Query: 328 LAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXX 149
L + + +G +H + QE+R + F
Sbjct: 495 LRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKN--------------------------- 527
Query: 148 XXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+L+C+DL +RG+D + +VIN++
Sbjct: 528 --------------------LEVPVLICTDLASRGLDIPKIEVVINYD 555
>gi|96321|pir||A42357 probable ATP-dependent RNA helicase deaD - Escherichia coli
>gi|145727 (M63288) deaD [Escherichia coli]
Length = 571
Score = 37.5 bits (85), Expect = 0.088
Identities = 43/219 (19%), Positives = 79/219 (35%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ + + L+SAT P ++ +M +
Sbjct: 170 LVLDEADEMLRMGFIEDVETIMAQIPEGHQ----TALFSATMPEAIRRITRRFMKEPQEV 225
Query: 481 XLMKELSL-IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ ++ I Q Y V K L L +F IIF N +A +
Sbjct: 226 RIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN 285
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
G+ S ++ M Q R + + R D
Sbjct: 286 GYNSAALNGDMNQALREQTLERLKDG--------------RLD----------------- 314
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
IL+ +D+ RG+D + ++LV+N++
Sbjct: 315 ----------------ILIATDVAARGLDVERISLVVNYD 338
>gi|3646126|emb|CAA09374| (AJ010840) ATP-dependent RNA helicase [Homo sapiens]
Length = 420
Score = 37.5 bits (85), Expect = 0.088
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 76 ILVCSDLVTRGIDNKNVNLVINFEF 2
+L+C+ L+ RGID K VNLVIN++F
Sbjct: 286 VLICTALLARGIDFKGVNLVINYDF 310
>gi|461923|sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD
Length = 646
Score = 37.5 bits (85), Expect = 0.088
Identities = 43/219 (19%), Positives = 79/219 (35%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ + + L+SAT P ++ +M +
Sbjct: 170 LVLDEADEMLRMGFIEDVETIMAQIPEGHQ----TALFSATMPEAIRRITRRFMKEPQEV 225
Query: 481 XLMKELSL-IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ ++ I Q Y V K L L +F IIF N +A +
Sbjct: 226 RIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN 285
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
G+ S ++ M Q R + + R D
Sbjct: 286 GYNSAALNGDMNQALREQTLERLKDG--------------RLD----------------- 314
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
IL+ +D+ RG+D + ++LV+N++
Sbjct: 315 ----------------ILIATDVAARGLDVERISLVVNYD 338
>gi|606102 (U18997) two frameshifts relative to ECODEAD [Escherichia coli]
>gi|1789553 (AE000397) inducible ATP-independent RNA
helicase [Escherichia coli]
Length = 646
Score = 37.5 bits (85), Expect = 0.088
Identities = 43/219 (19%), Positives = 79/219 (35%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ + + L+SAT P ++ +M +
Sbjct: 170 LVLDEADEMLRMGFIEDVETIMAQIPEGHQ----TALFSATMPEAIRRITRRFMKEPQEV 225
Query: 481 XLMKELSL-IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ ++ I Q Y V K L L +F IIF N +A +
Sbjct: 226 RIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN 285
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
G+ S ++ M Q R + + R D
Sbjct: 286 GYNSAALNGDMNQALREQTLERLKDG--------------RLD----------------- 314
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
IL+ +D+ RG+D + ++LV+N++
Sbjct: 315 ----------------ILIATDVAARGLDVERISLVVNYD 338
>gi|2655202 (AF026402) U5 snRNP 100 kD protein [Homo sapiens]
Length = 820
Score = 37.1 bits (84), Expect = 0.11
Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 24/219 (10%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKK----------EKIILE------------LY 548
+V DEAD+M+ + F +++ ++ + ++ + EK++ ++
Sbjct: 546 VVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMF 605
Query: 547 SATFPSVVKDFVSMYMHN--ICYIXLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEF 374
+AT P V+ Y+ + YI + + Q L+ EK L +L +
Sbjct: 606 TATMPPAVERLARSYLRRPAVVYIGSAGKPHE-RVEQKVFLMSESEKRKKLLAILEQGFD 664
Query: 373 KQCIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIV 194
IIF N ++LA + MG+ + +H QE+R N K
Sbjct: 665 PPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAK--------- 715
Query: 193 SGVRTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVI 14
ILV +D+ RGID ++V++V+
Sbjct: 716 --------------------------------------DILVATDVAGRGIDIQDVSMVV 737
Query: 13 NFE 5
N++
Sbjct: 738 NYD 740
>gi|3122189|sp|Q26696|HE64_TRYBB PUTATIVE DEAD BOX RNA HELICASE HEL64 >gi|1166504 (U29199) HEL64
[Trypanosoma brucei]
Length = 568
Score = 37.1 bits (84), Expect = 0.11
Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 2/220 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F ++ + + +++ ++SAT+P ++ + + I
Sbjct: 252 LVLDEADRMLDMGFEPQVRKICGQIRPDRQTV----MFSATWPREIQRLAAEFQKQWIRI 307
Query: 481 XL-MKELSLI-GIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ EL + Q + L K L+ L+ + ++ ++FC + L ++
Sbjct: 308 SVGSTELQANKDVTQRFILTQEFAKQDELRKLMQEHREERVLVFCKMKRTADELERQLRR 367
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
G+ + IH +Q +R + F + +
Sbjct: 368 WGYDAMAIHGDKEQRQREFILARFRKDPRL------------------------------ 397
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
LV +D+ RG+D K + VIN++F
Sbjct: 398 -----------------CLVATDVAARGLDIKQLETVINYDF 422
>gi|1351656|sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C30D11.03
>gi|2130403|pir||S62561 hypothetical protein
SPAC30D11.03 - fission yeast (Schizosaccharomyces pombe)
>gi|1065890|emb|CAA91889| (Z67961) ATP dependent RNA
helicase [Schizosaccharomyces pombe]
Length = 754
Score = 37.1 bits (84), Expect = 0.11
Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 4/219 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHN--IC 488
MV DEAD+ML F + +I+ +++ L+SAT V D + + ++
Sbjct: 409 MVMDEADRMLEDGFADELNEIIQACPKSRQTM----LFSATMTDKVDDLIRLSLNRPVRV 464
Query: 487 YIXLMKELSLIGIYQFYALVDIKEKLH--CLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
++ K + + +F + +E L L L ++ ++ IIF + + +
Sbjct: 465 FVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIF 524
Query: 313 TDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXX 134
+ + IH + QE+R + +F +
Sbjct: 525 GLLSLNATEIHGSLSQEQRVRALEDFRDG------------------------------- 553
Query: 133 XXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
C L+ +D+ +RGID K + +VIN+E
Sbjct: 554 ----------------KCNYLLATDVASRGIDIKGIEVVINYE 580
>gi|3687476|emb|CAA21146| (AL031786) putative atp dependent rna helicase [Schizosaccharomyces
pombe]
Length = 606
Score = 36.7 bits (83), Expect = 0.15
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 9/147 (6%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMY-MHNICY 485
++ DEAD ++ + F ++ +I L ++ L+SAT V F+ + + N
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQLPKQRRTG----LFSATMNDTVSSFLKIAGLRNSVR 213
Query: 484 IXLMKELSLIGIYQFYAL------VDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELL- 326
+ + I +L + K+ C+ LL IE+++ I+F ++ +VE
Sbjct: 214 VSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFN 273
Query: 325 -AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ F +H + Q R++ F F +S K
Sbjct: 274 SLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNK 309
>gi|461924|sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD >gi|625758|pir||JX0314 DEAD box
protein - Klebsiella pneumoniae >gi|149184 (L08387) RNA
helicase [Klebsiella pneumoniae]
Length = 659
Score = 36.4 bits (82), Expect = 0.20
Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ + + L+SAT P ++ +M +
Sbjct: 169 LVLDEADEMLRMGFIEDVETIMAQIPEGHQ----TALFSATMPEAIRRITRRFMKEPQEV 224
Query: 481 XLMKELSL-IGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ ++ I Q Y K L L +F IIF N +A +
Sbjct: 225 RIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN 284
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
G+ S ++ M Q R + + R D
Sbjct: 285 GYNSAALNGDMNQALREQALERLKDG--------------RLD----------------- 313
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
IL+ +D+ RG+D + ++LV+N++
Sbjct: 314 ----------------ILIATDVAARGLDVERISLVVNYD 337
>gi|226216|prf||1501351A eIF 4A-like protein [Escherichia coli]
Length = 446
Score = 36.4 bits (82), Expect = 0.20
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFP-SVVKDFVSMYMHNICY 485
++ DEAD+ML + F +I+++ K+ L+SAT ++DF + +
Sbjct: 155 LILDEADRMLDMGFAQDIEHIAGETRWRKQTL----LFSATLEGDAIQDFAERLLEDPVE 210
Query: 484 IXL---MKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
+ +E I + +Y D++ K L LL + E + I+F N +E + M
Sbjct: 211 VSANPSTRERKKIHQW-YYRADDLEHKTALLVHLLKQPEATRSIVFVR--NRLEAVCMSN 267
Query: 313 TD---MGFPSYYIHSKMKQEERNKVFHNFSE 230
G + Y+ +M Q +RN+ +E
Sbjct: 268 QTGCANGINNCYLEGEMVQGKRNEAIKRLTE 298
>gi|78328|pir||S06451 ATP-dependent RNA helicase homolog - Escherichia coli
Length = 446
Score = 36.4 bits (82), Expect = 0.20
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFP-SVVKDFVSMYMHNICY 485
++ DEAD+ML + F +I+++ K+ L+SAT ++DF + +
Sbjct: 155 LILDEADRMLDMGFAQDIEHIAGETRWRKQTL----LFSATLEGDAIQDFAERLLEDPVE 210
Query: 484 IXL---MKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKV 314
+ +E I + +Y D++ K L LL + E + I+F N ++ +
Sbjct: 211 VSANPSTRERKKIHQW-YYRADDLEHKTALLVHLLKQPEATRSIVFVRNRLEAVCMSWQT 269
Query: 313 -TDMGFPSYYIHSKMKQEERNKVFHNFSE 230
G + Y+ +M Q +RN+ +E
Sbjct: 270 GCANGINNCYLEGEMVQGKRNEAIKRLTE 298
>gi|731667|sp|P38712|RRP3_YEAST ATP-DEPENDENT RRNA HELICASE RRP3 >gi|626623|pir||S46713
hypothetical protein YHR065c - yeast (Saccharomyces
cerevisiae) >gi|487961 (U00061) Yhr065cp [Saccharomyces
cerevisiae]
Length = 543
Score = 36.4 bits (82), Expect = 0.20
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD++L +EF L R+L + ++ L+SAT S + + N
Sbjct: 270 LVMDEADRLLDMEFG---PVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKC 326
Query: 481 XLMKELSLIG-IYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + + + Q +V K L LLN+ K IIF N E L+ +
Sbjct: 327 AVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLL 386
Query: 304 GFPSYYIHSKMKQEER 257
F + +H + Q +R
Sbjct: 387 EFSATALHGDLNQNQR 402
>gi|1174440|sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB HOMOLOG >gi|1073894|pir||H64066
ATP-dependent RNA helicase (srmB) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573394 (U32725)
ATP-dependent RNA helicase (srmB) [Haemophilus
influenzae Rd]
Length = 439
Score = 36.4 bits (82), Expect = 0.20
Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 3/219 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPS-VVKDFVSMYMHNICY 485
++FDEAD+ML + F + + + K+ L+SAT ++ DF +++
Sbjct: 154 LIFDEADRMLQMGFGQDAEKIAAETRWRKQTL----LFSATLEGELLVDFAERLLNDPVK 209
Query: 484 IXLM-KELSLIGIYQFYALVDIKE-KLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVT 311
+ I Q+Y D E K+ L + E + I+F + L+ +
Sbjct: 210 VDAEPSRRERKKINQWYYHADSNEHKIKLLARFIETEEVTRGIVFIRRREDARELSETLR 269
Query: 310 DMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXX 131
G S Y+ +M Q +RN + + SG+ T
Sbjct: 270 KRGIRSAYLEGEMAQTQRNNAI-------------DKLKSGIVT---------------- 300
Query: 130 XXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+LV +D+ RGID +V+ V+NF+
Sbjct: 301 ------------------VLVATDVAARGIDIDDVSHVMNFD 324
>gi|1723147|sp|P52271|Y308_MYCGE PROBABLE RNA HELICASE MG308 >gi|1361461|pir||A64234 ATP-dependent
RNA helicase (deaD) homolog MG308 - Mycoplasma
genitalium (SGC3) >gi|3844887 (U39711) ATP-dependent RNA
helicase, putative [Mycoplasma genitalium]
Length = 410
Score = 36.0 bits (81), Expect = 0.26
Identities = 43/219 (19%), Positives = 90/219 (40%), Gaps = 1/219 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+VFDE D L +I+ + + + +K K + +SAT + + + N I
Sbjct: 123 VVFDEIDMFLE---QSSIQQWLECVHLFQKAKPLFAFFSATLFNQQLQIIKKQVINTKVI 179
Query: 481 XLMKELSLIGIYQFYAL-VDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
L + + + + + + ++ + + L LL + +Q I+FC+N +++ L +++
Sbjct: 180 NLHPKQWIHPLVKHFVVHLNTENRFSGLLALLKHHQNQQIIVFCSNQKSLKQLTQLLSNN 239
Query: 304 GFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXXX 125
I+ + +ER +NF+++ NN +
Sbjct: 240 NISFGSIYGSLTYQERK---NNFTKA-----TNNKL------------------------ 267
Query: 124 XXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
K+LV SDL +RGID ++VI+++
Sbjct: 268 ---------------KLLVVSDLFSRGIDLNYFSVVISWD 292
>gi|4008414|emb|CAB07418| (Z92839) predicted using Genefinder; similar to ATP-dependent
helicase (DEAD box), Zinc finger, CCHC class (3 domains)
[Caenorhabditis elegans]
Length = 1032
Score = 35.6 bits (80), Expect = 0.34
Identities = 38/142 (26%), Positives = 72/142 (49%), Gaps = 16/142 (11%)
Query: 661 MVFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIIL------ELYSATFPSVVKDFVSMY 503
+V DEAD+M+ S++F + +I ++ ++ +L S P VK+ +M
Sbjct: 873 IVLDEADRMVDSIDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTML 932
Query: 502 MHNICYIXLMK-ELSLIGIYQ------FYALVDIKEKLHCLKTLLNK--IEFKQCIIFCN 350
+ K + ++ + + Y L+ I E TLL IE ++ +IF N
Sbjct: 933 QVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENT---VTLLPDAPIEKQKTLIFVN 989
Query: 349 NVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNF 236
+V + LA ++ G + +HS QE+R++ +F
Sbjct: 990 SVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDF 1027
>gi|3184061|emb|CAA19304| (AL023776) atp dependent helicase [Schizosaccharomyces pombe]
Length = 595
Score = 35.6 bits (80), Expect = 0.34
Identities = 33/144 (22%), Positives = 61/144 (41%), Gaps = 2/144 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD MLS + ++K L R L + L SAT + + N +I
Sbjct: 168 LVIDEADLMLSFGYNEDMKTLSRSLPRGTQS----FLMSATLSKNIASLQKLVCRN-PFI 222
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEF--KQCIIFCNNVNNVELLAMKVTD 308
+K+ G Y + ++ L +L K+ + +IF N +N L + +
Sbjct: 223 LAVKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQ 282
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSE 230
G S ++S++ R + +++
Sbjct: 283 FGLKSLVLNSELPVNSRLHILEQYNK 308
>gi|3337394 (AC004531) Gene with similaity to DEAD box helicases [Homo sapiens]
Length = 540
Score = 35.2 bits (79), Expect = 0.44
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 76 ILVCSDLVTRGIDNKNVNLVINFEF 2
IL+C+D+ +RG+D+ V LV+N++F
Sbjct: 450 ILLCTDIASRGLDSTGVELVVNYDF 474
>gi|2367402 (U86382) mitochondrial DEAD box protein [Trypanosoma brucei]
Length = 546
Score = 34.8 bits (78), Expect = 0.58
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+VFDEAD++L + F + ++ S ++ + + ++SAT+P VV+ Y+ Y+
Sbjct: 264 LVFDEADRLLDMGFKVQLDDILGYFSSHRPAQTM--MWSATWPPVVEQLAQEYLSQNRYV 321
>gi|544270|sp|P35599|EXP9_STRPN EXPORTED PROTEIN 9 >gi|398101 (L20563) Exp9 [Streptococcus
pneumoniae]
Length = 113
Score = 34.4 bits (77), Expect = 0.76
Identities = 22/75 (29%), Positives = 42/75 (55%), Gaps = 1/75 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
++ DEAD+ML++ F +I+ +I + N++ L+SAT P +K +M ++
Sbjct: 41 LILDEADEMLNMGFLEDIEAIISRVPENRQTL----LFSATMPDAIKRIGVQFMKAPEHV 96
Query: 481 XL-MKELSLIGIYQFY 437
+ KEL+ + Q+Y
Sbjct: 97 RIAAKELTTELVDQYY 112
>gi|130806|sp|P21372|PR05_YEAST PRE-MRNA PROCESSING RNA HELICASE PRP5 >gi|101499|pir||A35791
pre-mRNA processing protein PRP5 - yeast (Saccharomyces
cerevisiae) >gi|172284 (M33191) PRP5 [Saccharomyces
cerevisiae] >gi|536641|emb|CAA85200| (Z36106) ORF
YBR237w [Saccharomyces cerevisiae]
Length = 849
Score = 34.4 bits (77), Expect = 0.76
Identities = 35/135 (25%), Positives = 71/135 (51%), Gaps = 22/135 (16%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD++ + F I +++ + +K+ L+SATFP+ ++ F +H+ I
Sbjct: 412 VVMDEADRLFDLGFEPQITQIMKTVRPDKQ----CVLFSATFPNKLRSFAVRVLHSPISI 467
Query: 481 XL-MKELSLIGIYQFYALVDIK-EKLHCLKTLLN-KIEF-------------------KQ 368
+ K + + Q + + + EK L L++ + EF +
Sbjct: 468 TINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAK 527
Query: 367 CIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEER 257
IIF ++ N + ++ K+ + G + IH+ +ER
Sbjct: 528 AIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQER 564
>gi|3861207|emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE)
[Rickettsia prowazekii]
Length = 407
Score = 34.0 bits (76), Expect = 1.00
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DE D+ML + ++ + + L EK + ++SAT P + Y++N I
Sbjct: 143 IVLDEMDRMLDMGMKEQLEEINKFLP----EKRQVLMFSATMPKHIIAVSQKYLNNPVRI 198
Query: 481 XL-MKELSLIGIYQFYALVDIKEKLHCL-KTLLNKIEFKQCIIFCNNVNNVELLAMKVTD 308
+ + I Q V KEK L K L N++ IIF + + LA +
Sbjct: 199 MVGATNKAAAEIKQELMHVSNKEKFSELTKQLGNRVG--SVIIFVKTKRSADQLAKMLKY 256
Query: 307 MGFPSYYIHSKMKQEERNKVFHNF 236
+ IH + Q +R +V +F
Sbjct: 257 ENHKAEAIHGDLSQSQRERVILSF 280
>gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase [Arabidopsis
thaliana]
Length = 845
Score = 34.0 bits (76), Expect = 1.00
Identities = 29/112 (25%), Positives = 54/112 (47%), Gaps = 3/112 (2%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+VFDEAD + + F + ++ LS N++ L+SAT PS + +F + +
Sbjct: 177 VVFDEADSLFGMGFAEQLHQILTQLSENRQTL----LFSATLPSALAEFAKAGLREPQLV 232
Query: 481 XLMKELSLI-GIYQFYALVDIKEKLHCLKTLLNK--IEFKQCIIFCNNVNNVELL 326
L E + + + V +EK L L+ + +Q +IF + ++VE +
Sbjct: 233 RLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFV 287
>gi|3116113|emb|CAA18864| (AL023286) probable atp-dependent rna helicase [Schizosaccharomyces
pombe]
Length = 709
Score = 34.0 bits (76), Expect = 1.00
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 22/219 (10%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLL----SMNKKE-----KIILELYSATFPSVVKDFVS 509
+V DE D+++ + F + ++ L S+ KK+ + + L SAT VK
Sbjct: 298 VVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD 357
Query: 508 MYMHNICYI--XLMKELS------LIGIYQFYALVDIKEKLHCLKTLLNKI--EFKQCII 359
+ + Y+ +++E + + Q Y +V K +L L LL +K+ II
Sbjct: 358 SALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIII 417
Query: 358 FCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSG--- 188
F + ++V D F ++ + +E + +S +I+S
Sbjct: 418 FLSCSDSV--------DFHFEAF--RCAINADEMEEAVKEKPDS------EGDIISNAPA 461
Query: 187 VRTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINF 8
+R D G IL+C+D+ RG+D NV+LV+ +
Sbjct: 462 LRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQY 521
Query: 7 E 5
+
Sbjct: 522 D 522
>gi|1401206 (U58510) pre-mRNA splicing factor PRP 6 homolog [Chlorarachnion
CCMP621]
Length = 686
Score = 34.0 bits (76), Expect = 1.00
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 18/88 (20%)
Query: 589 LSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIXLMK------ELSLIGIYQFYALV 428
L+ N ++ I + +YS+ F ++KD ++ Y N + + K ++SL+ +Y Y+ +
Sbjct: 381 LTFNTRKSINIYIYSSKFFYLIKD-INNYFMNEKFFSIYKNFVGFLKISLLKLY-IYSNI 438
Query: 427 DIK-EKLHCL-KTLLNKIEFKQCII-------FCNN---VNNVELL 326
IK E LH L KT++N K+ I CNN + N ++L
Sbjct: 439 KIKSELLHLLEKTIINNNTLKRAFITLLQSFYSCNNKYLIKNTKIL 484
>gi|3874996|emb|CAB03765| (Z81449) similar to ATP-dependent RNA helicase; cDNA EST
EMBL:D37484 comes from this gene; cDNA EST EMBL:D64936
comes from this gene; cDNA EST yk371b5.3 comes from this
gene; cDNA EST yk371b5.5 comes from this gene; cDNA EST
yk...
Length = 811
Score = 33.6 bits (75), Expect = 1.3
Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 11/219 (5%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+VFDEAD+M + F +K + + +++ ++SATF V+ +
Sbjct: 417 LVFDEADRMFDMGFEAQVKSISDHVRPDRQ----CLMFSATFKQKVE--------RLARD 464
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKT--------LLNKIEFK---QCIIFCNNVNNV 335
L+ + ++ A DI++K+ ++ + N +EF + +IF +
Sbjct: 465 ALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIFVTKKLDS 524
Query: 334 ELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXX 155
E +A K+ F +H M Q ERN+ F +
Sbjct: 525 EDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKK------------------------ 560
Query: 154 XXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFE 5
+ILV +D+ RG+D + VINF+
Sbjct: 561 ------------------------SQILVATDVAARGLDISEIRTVINFD 586
>gi|4493986|emb|CAB39045| (AL034559) predicted using hexExon; MAL3P7.34 (PFC1015c),
Hypothetical protein, len: 2341 aa [Plasmodium
falciparum]
Length = 2340
Score = 33.6 bits (75), Expect = 1.3
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 610 IKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIXLMK-ELSLIGIYQFYA 434
IK + + N +E I+++ S ++ F+ ++ + I L+K SLI F
Sbjct: 1055 IKCIDLINKYNNQEYILIKTLS------MEIFLQLWNNESVKIFLLKIGKSLIRFLIFIG 1108
Query: 433 LVDIKEKLHCLKTLL------NKIEFKQCI--IFCNNVNNVELLAMKVTDMGFPSYYIHS 278
V+ K + L LL N+I+ KQ + + CNN NN+ L K+ +YI
Sbjct: 1109 NVEYIHK-NILTLLLSSIKNTNQIDLKQKLSNLICNNKNNI-LQKKKI------KHYIKK 1160
Query: 277 KMKQEERNKVFHNFSESYKYNQNNNNIVS 191
K ++ N +Y N NNNN+ S
Sbjct: 1161 FQKSKKCILYISNQKFTYNINLNNNNVFS 1189
>gi|529704 (U13070) similar to RNA helicases [Caenorhabditis elegans]
Length = 701
Score = 33.6 bits (75), Expect = 1.3
Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 22/219 (10%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLL---SMNK------KEKIILE------------LYS 545
++ DEAD+ML + F +++ ++ + +M K E+ +++ +++
Sbjct: 456 VILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFT 515
Query: 544 ATFPSVVKDFVSMYMHNICYIXLMKE-LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQ 368
AT S ++ Y+ + + + Q +V K L +L
Sbjct: 516 ATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPP 575
Query: 367 CIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSG 188
IIF N ++L+ +T +GF +H Q++R E
Sbjct: 576 IIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTS----------- 624
Query: 187 VRTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINF 8
ILV +D+ RGID K+V+LV+N+
Sbjct: 625 ------------------------------------DILVATDVAGRGIDVKDVSLVLNY 648
Query: 7 E 5
+
Sbjct: 649 D 649
>gi|4493987|emb|CAB39046| (AL034559) predicted using hexExon; MAL3P7.37 (PFC1030w),
Hypothetical protein, len: 1543 aa [Plasmodium
falciparum]
Length = 1542
Score = 33.6 bits (75), Expect = 1.3
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 421 KEKLHCLKTLLNKIEFKQCIIF---CNNVNNVELLAMKV-----TDMGFPSYYIHSKMKQ 266
KE+ C K + +K+ +++ CN N + + M T + F +++ +KMK
Sbjct: 1375 KERKKCEK-IFHKMTRHVMLLYLHKCNKKKNKKYIYMNFLRKHKTSLSF-NHFTSNKMKM 1432
Query: 265 EERNKVFHNFSESYKYNQNNNNIVSGVR 182
+ NK+ N+S + NN+NI + R
Sbjct: 1433 KTNNKIKRNYSYKNNHKNNNSNISNKAR 1460
>gi|2773233 (AF039718) similar to "DEAD" box helicases [Caenorhabditis elegans]
Length = 1172
Score = 33.2 bits (74), Expect = 1.7
Identities = 38/142 (26%), Positives = 71/142 (49%), Gaps = 16/142 (11%)
Query: 661 MVFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIIL------ELYSATFPSVVKDFVSMY 503
+V DEAD+M+ S +F + +I ++ ++ +L S P VK+ +M
Sbjct: 910 IVLDEADRMVDSNDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTML 969
Query: 502 MHNICYIXLMK-ELSLIGIYQ------FYALVDIKEKLHCLKTLLNK--IEFKQCIIFCN 350
+ K + ++ + + Y L+ I E TLL IE ++ +IF N
Sbjct: 970 QVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENT---VTLLPDAPIEKQKTLIFVN 1026
Query: 349 NVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNF 236
+V + LA ++ G + +HS QE+R++ +F
Sbjct: 1027 SVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDF 1064
>gi|3386540 (AF079508) germline RNA helicase-4 [Caenorhabditis elegans]
Length = 1156
Score = 33.2 bits (74), Expect = 1.7
Identities = 38/142 (26%), Positives = 71/142 (49%), Gaps = 16/142 (11%)
Query: 661 MVFDEADKML-SVEFXXNIKYLIRLLSMNKKEKIIL------ELYSATFPSVVKDFVSMY 503
+V DEAD+M+ S +F + +I ++ ++ +L S P VK+ +M
Sbjct: 894 IVLDEADRMVDSNDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTML 953
Query: 502 MHNICYIXLMK-ELSLIGIYQ------FYALVDIKEKLHCLKTLLNK--IEFKQCIIFCN 350
+ K + ++ + + Y L+ I E TLL IE ++ +IF N
Sbjct: 954 QVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENT---VTLLPDAPIEKQKTLIFVN 1010
Query: 349 NVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNF 236
+V + LA ++ G + +HS QE+R++ +F
Sbjct: 1011 SVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDF 1048
>gi|1536826|dbj|BAA11901| (D83386) UORF6 [Shewanella sp. DSS12]
Length = 206
Score = 33.2 bits (74), Expect = 1.7
Identities = 16/56 (28%), Positives = 32/56 (56%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHN 494
++ DEAD+ML + F +IK ++R+L ++ ++SATF ++ ++N
Sbjct: 151 LILDEADRMLDMGFIHDIKKILRVLPAKRQNL----MFSATFSDDIRKLAKGLVNN 202
>gi|4490304|emb|CAB38795| (AL035678) putative protein [Arabidopsis thaliana]
Length = 542
Score = 33.2 bits (74), Expect = 1.7
Identities = 31/147 (21%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+ DEAD+++ + F +I+++ ++ L+SAT P+ ++ F +
Sbjct: 257 LTLDEADRLVDLGFEDDIRHVFDHFKSQRQTL----LFSATMPAKIQIFATS-------- 304
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCI--------IFCNNVNNVELL 326
L+K +++ A +D+ +++ +K + +C+ IFC N +V+ +
Sbjct: 305 ALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDI 364
Query: 325 AMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYK 221
+ G + IH QE+R+ F K
Sbjct: 365 HEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKK 399
>gi|2500535|sp|Q12389|YD31_YEAST PUTATIVE ATP-DEPENDENT RNA HELICASE YDL031W >gi|2131315|pir||S67564
hypothetical protein YDL031w - yeast (Saccharomyces
cerevisiae) >gi|1279685|emb|CAA96458| (Z71781) unknown
[Saccharomyces cerevisiae] >gi|1431010|emb|CAA98590|
(Z74079) ORF YDL031w [Saccharomyces cerevisiae]
Length = 995
Score = 32.8 bits (73), Expect = 2.2
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+VFDEAD++ + F + L+ L ++ L+SAT P+ + DFV + N +
Sbjct: 285 VVFDEADRLFEMGFQEQLNELLASLPTTRQTL----LFSATLPNSLVDFVKAGLVNPVLV 340
Query: 481 XLMKE 467
L E
Sbjct: 341 RLDAE 345
>gi|1169261|sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG >gi|1073892|pir||F64056
ATP-dependent RNA helicase (deaD) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573195 (U32709)
ATP-dependent RNA helicase (deaD) [Haemophilus
influenzae Rd]
Length = 613
Score = 32.8 bits (73), Expect = 2.2
Identities = 32/137 (23%), Positives = 58/137 (41%), Gaps = 1/137 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD+ML + F +++ ++ L N + L+SAT P ++ +M++ +
Sbjct: 152 IVLDEADEMLRMGFIDDVETVMAELPENHQ----TALFSATMPEPIRRITKRFMNDPQEV 207
Query: 481 XL-MKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDM 305
+ + + I Q V K L L +F IIF + +
Sbjct: 208 KIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKN 267
Query: 304 GFPSYYIHSKMKQEERNK 251
GF S ++ M Q+ R +
Sbjct: 268 GFRSAALNGDMTQQLREQ 285
>gi|2833565|sp|Q58165|Y755_METJA HYPOTHETICAL PROTEIN MJ0755 PRECURSOR >gi|2128478|pir||C64394
hypothetical protein MJ0755 - Methanococcus jannaschii
>gi|1499574 (U67521) N-acetylmuramoyl-L-alanine amidase
[Methanococcus jannaschii]
Length = 342
Score = 32.8 bits (73), Expect = 2.2
Identities = 17/85 (20%), Positives = 44/85 (51%)
Query: 433 LVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERN 254
+ D++EKL ++ L+ + +++ + +++ +K+ ++H + +R
Sbjct: 243 VTDLEEKLKEVEQLMEQNRYQEAYRIMVQLQEEQMVRVKL--------HLHPMWSKMKRG 294
Query: 253 KVFHNFSESYKYNQNNNNIVSGVRT 179
K+ N + S+ Y+QN NN+ + + T
Sbjct: 295 KIQENKNASHIYHQNINNLTNELNT 319
>gi|2245018|emb|CAB10438| (Z97341) unnamed protein product [Arabidopsis thaliana]
Length = 683
Score = 32.8 bits (73), Expect = 2.2
Identities = 17/55 (30%), Positives = 29/55 (51%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMH 497
++ DEAD++L F I L+RL ++ L+SAT VK+ V + ++
Sbjct: 335 LILDEADRLLQTGFATEITELVRLCPKRRQTM----LFSATMTEEVKELVKLSLN 385
>gi|3581903|emb|CAA20842| (AL031545) DEAD box ATP-dependent RNA helicase [Schizosaccharomyces
pombe]
Length = 604
Score = 32.8 bits (73), Expect = 2.2
Identities = 14/24 (58%), Positives = 18/24 (74%)
Query: 76 ILVCSDLVTRGIDNKNVNLVINFE 5
+LVCSDL+ RGID N VIN++
Sbjct: 490 LLVCSDLMARGIDVANTQNVINYD 513
>gi|3776027|emb|CAA09214| (AJ010475) RNA helicase [Arabidopsis thaliana]
Length = 789
Score = 32.8 bits (73), Expect = 2.2
Identities = 17/55 (30%), Positives = 29/55 (51%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMH 497
++ DEAD++L F I L+RL ++ L+SAT VK+ V + ++
Sbjct: 317 LILDEADRLLQTGFATEITELVRLCPKRRQTM----LFSATMTEEVKELVKLSLN 367
>gi|1488521|emb|CAA68194| (X99938) RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 32.5 bits (72), Expect = 2.9
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYM 500
V DEAD+ML + F +++ ++ + + K + + L+SAT PS VK+ + ++
Sbjct: 253 VLDEADEMLRMGFVEDVELILGKVEDSTKVQTL--LFSATLPSWVKNISNRFL 303
>gi|1076837|pir||S53813 probable RNA helicase - slime mold (Dictyostelium discoideum)
>gi|1076843|pir||S49262 RNA helicase - slime mold
(Dictyostelium discoideum) (fragment)
>gi|550331|emb|CAA57418| (X81824) putative RNA helicase
[Dictyostelium discoideum]
Length = 566
Score = 32.5 bits (72), Expect = 2.9
Identities = 34/144 (23%), Positives = 65/144 (44%), Gaps = 19/144 (13%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLS---MNKKEKIILE--------------LYSATFP 533
+V DEAD M+ + F + ++ + + ++ + E L+SAT P
Sbjct: 299 IVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMP 358
Query: 532 SVVKDFVSMYMHNICYIXLMKELSLIG-IYQFYALVDIK-EKLHCLKTLLNKIEFKQCII 359
+V+ Y+ C I + + ++ I Q V + +K L L+ II
Sbjct: 359 PLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIII 418
Query: 358 FCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSE 230
F N + +++A + + +HS QE+R F +
Sbjct: 419 FVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKK 461
>gi|4538903|emb|CAB39640| (AL049482) putative protein [Arabidopsis thaliana]
Length = 496
Score = 32.5 bits (72), Expect = 2.9
Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 2/220 (0%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+V DEAD M F I+ L +N+ K++ E+ S + D + ++
Sbjct: 269 LVLDEADTMFDRGFGPEIRKF--LAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTS 326
Query: 481 XLMKELSLIGIYQFYALVDIKEKLHCLKTLLNKIEFK--QCIIFCNNVNNVELLAMKVTD 308
L K+++ + F L ++KL L +L K + ++FCN +N+ + +++
Sbjct: 327 TLHKKIANAR-HDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSE 385
Query: 307 MGFPSYYIHSKMKQEERNKVFHNFSESYKYNQNNNNIVSGVRTDXXXXXXXXXXXXXXXX 128
+ H ++ E+R + F +
Sbjct: 386 NQISTVNYHGEVPAEQRVENLKKFKDE--------------------------------- 412
Query: 127 XXXXXXXXXXXXXYGCKILVCSDLVTRGIDNKNVNLVINFEF 2
C LVC+DL RG+D +V+ V+ F+F
Sbjct: 413 ------------EGDCPTLVCTDLAARGLD-LDVDHVVMFDF 441
>gi|4832|emb|CAA41110| (X58099) eIF4a [Saccharomyces cerevisiae]
Length = 89
Score = 32.1 bits (71), Expect = 3.8
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 79 KILVCSDLVTRGIDNKNVNLVINFE 5
+IL+ +DL+ RGID + V+LVIN++
Sbjct: 6 RILISTDLLARGIDVQQVSLVINYD 30
>gi|1175401|sp|Q09719|YA47_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C31A2.07C
>gi|2130418|pir||S59645 hypothetical protein
SPAC31A2.07c - fission yeast (Schizosaccharomyces pombe)
>gi|914885|emb|CAA90465| (Z50113) unknown
[Schizosaccharomyces pombe]
Length = 848
Score = 32.1 bits (71), Expect = 3.8
Identities = 32/122 (26%), Positives = 61/122 (49%), Gaps = 12/122 (9%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYI 482
+VFDEAD++ + F + ++ L +++ L+SAT P + DF + + +
Sbjct: 217 VVFDEADRLFEMGFAAQLTEILHALPTSRQTL----LFSATLPRTLVDFAKAGLQDPVLV 272
Query: 481 XLMKELSLIGIYQ--FYAL--VDIKEKLHCLKTLLNKIEFKQCI--IFCNNVNNVEL--- 329
L E + Q F+++ + + L C+ + K+ K + NVNN +
Sbjct: 273 RLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKR 332
Query: 328 ---LAMKVTDMGFP 296
LA+K ++ G P
Sbjct: 333 ALELALKGSESGSP 346
>gi|3758843|emb|CAB11128| (Z98551) predicted using hexExon; MAL3P6.23 (PFC0820w), Hypothetical
protein, len: 4982 aa [Plasmodium falciparum]
Length = 4981
Score = 32.1 bits (71), Expect = 3.8
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 553 LYSATFPSVVKDFVSMYMHNI------CYIXLMKELSLIGIYQF-YALVDIKEKLHCLKT 395
LY +++DF S H+ C K +S+ G+Y Y ++ + +K
Sbjct: 3271 LYKLVNDIIIEDFSSDEKHSYVNTLLCCIHNKNKHISMNGLYLLMYYILKEHFDIESIKL 3330
Query: 394 LLNKIEFKQCIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYN 215
L+N++ + N+ N + L + S+ ++EE+ + + + N
Sbjct: 3331 LMNRVFDELFYYTKRNILNEKCLKRRQK----------SEEEEEEKTNKKNKINNNNHNN 3380
Query: 214 QNNNNIVSGVRTD 176
NNNN+V D
Sbjct: 3381 NNNNNVVEAYNND 3393
>gi|1488647|emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea]
Length = 685
Score = 32.1 bits (71), Expect = 3.8
Identities = 18/53 (33%), Positives = 31/53 (57%)
Query: 658 VFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYM 500
V DEAD+ML + F +++ + L ++ K+ L+SAT PS VK + ++
Sbjct: 264 VLDEADEMLKMGFVDDVELI--LGKVDHVSKVQTLLFSATLPSWVKQISTRFL 314
>gi|887563|emb|CAA80490| (Z22868) serine/threonine-protein kinase [Plasmodium falciparum]
Length = 765
Score = 32.1 bits (71), Expect = 3.8
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 388 NKIEFKQCIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQEERNKVFHNFSESYKYNQN 209
NK+ K C + NN +V + K SY + + N++ ++ ++Y +
Sbjct: 96 NKVNMSYSNNTGDVNTIGKK------DSYKKNINLTMSSNNQIKYDHIKNYNIERY 149
Query: 208 NNNIV 194
NNI+
Sbjct: 150 KNNII 154
>gi|1127775 (U40244) RNA helicase [unidentified archaeon 4B7]
Length = 78
Score = 32.1 bits (71), Expect = 3.8
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 661 MVFDEADKMLSVEFXXNIKYLIRLLSMNKKEKIILELYSATFP 533
+V DEAD ML + F +I+Y+++ + N+ I L+SAT P
Sbjct: 35 VVLDEADVMLDMGFIEDIEYVLQKIPGNR----ITSLWSATMP 73
>gi|3024353|sp|P56255|PCRA_BACST ATP-DEPENDENT HELICASE PCRA >gi|2781090|pdb|1PJR| Structure Of Dna
Helicase
Length = 724
Score = 31.7 bits (70), Expect = 5.0
Identities = 15/73 (20%), Positives = 37/73 (50%)
Query: 601 LIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIXLMKELSLIGIYQFYALVDI 422
++ + NK + + E + +D H++C L +++ IGI + ++++D
Sbjct: 59 ILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDP 118
Query: 421 KEKLHCLKTLLNK 383
++L +KT+L +
Sbjct: 119 TDQLSVMKTILKE 131
>gi|4049854 (AF063866) ORF MSV069 putative rifampicin resistance (RIF) protein,
Heliothis armigera entomopoxvirus RIF homolog (vaccinia
D13L) similar to GB:U44841 [Melanoplus sanguinipes
entomopoxvirus]
Length = 575
Score = 31.7 bits (70), Expect = 5.0
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 613 NIKYLIRLLSMNKKEKIILELYSATFPSVVKDFVSMYMHNICYIXLMKELSLIGIYQFYA 434
N+ + I++ + N K I Y T S +K +V + ++
Sbjct: 261 NVLWSIKVDNFNGKSFISYPNYPETEESFIKSYVDKILQDLL------------------ 302
Query: 433 LVDIKEKLHCLKTLLNK----IEFKQCIIFCNNVNNVELLAMKVTDMGFPSYYIHSKMKQ 266
+VD + + NK +E K + ++VNN ++ +K G YY + +
Sbjct: 303 IVDFNNNFYAKRKFDNKKCKFVEIKPFDVVKHDVNNQCIINIKGIPEGMKLYYHKNILSF 362
Query: 265 EERNK-VFHNFSESYKY 218
RNK +N S +KY
Sbjct: 363 SRRNKNDEYNISNKFKY 379
>gi|3776003|emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis thaliana]
Length = 451
Score = 31.7 bits (70), Expect = 5.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 76 ILVCSDLVTRGIDNKNVNLVINFE 5
IL+ +DLV RGID KNV +I+++
Sbjct: 225 ILIATDLVARGIDIKNVRTIIHYK 248
>gi|3878881|emb|CAA99891| (Z75546) similar to ATP dependent RNA helicase; cDNA EST
EMBL:Z14326 comes from this gene; cDNA EST EMBL:T01860
comes from this gene; cDNA EST EMBL:C12376 comes from
this gene; cDNA EST EMBL:C10649 comes from this gene;
cDNA ES...
Length = 581
Score = 31.7 bits (70), Expect = 5.0
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 76 ILVCSDLVTRGIDNKNVNLVINFE 5
+LVC++L+ RG+D +V LVIN++
Sbjct: 428 VLVCTELLGRGLDLSDVGLVINYD 451
>gi|3845138 (AE001383) RAD2 endonuclease [Plasmodium falciparum]
Length = 1516
Score = 31.7 bits (70), Expect = 5.0
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 19/88 (21%)
Query: 463 SLIGIYQFYALVDIKEKLHCLKTLLNKI-----EFKQCIIFCNN-VNNVELLAMKVTDMG 302
SLI IY DIKEK L +L+ + K + CN+ ++ ++ +TD G
Sbjct: 199 SLIQIYD-----DIKEKDKSLNSLVEHVGNVPVSVKDVLTICNDDLSKIKNKIFMITDFG 253
Query: 301 FPSYY---------IHSKMKQEERNKVFHNFSESYKYNQ----NNNN 200
+ + + K + RNK +N S S YN+ NNNN
Sbjct: 254 PVLFLGEQDGDMGTVENINKLDNRNKDENNLSYSINYNKVQDVNNNN 300
>gi|3845280 (AE001418) hypothetical protein [Plasmodium falciparum]
Length = 1817
Score = 31.3 bits (69), Expect = 6.6
Identities = 35/148 (23%), Positives = 60/148 (39%), Gaps = 1/148 (0%)
Query: 643 DKMLSVEFXXNIKYLIRLLSMNK-KEKIILELYSATFPSVVKDFVSMYMHNICYIXLMKE 467
D+++ + F IK +N ++ I + Y A +V+ + + Y+ CY L KE
Sbjct: 168 DEIIYMRFIHKIKIKNMFALINNIRKNIYINKYQA---NVILNCIYKYLRIHCY-TLSKE 223
Query: 466 LSLIGIYQFYALVDIKEKLHCLKTLLNKIEFKQCIIFCNNVNNVELLAMKVTDMGFPSYY 287
+Y F V K+ L L+N ++ + I +N K D +
Sbjct: 224 EFFFFVYIFPQHVKYSSKV--LSYLINLLQDRHRIRDSTQMNVCYNEMKKDNDDDKNKHK 281
Query: 286 IHSKMKQEERNKVFHNFSESYKYNQNNNN 200
++ +NK N +K N NNNN
Sbjct: 282 DNNNNNNNNKNKHKDNNKNKHKDNNNNNN 310
>gi|3845222 (AE001404) hypothetical protein [Plasmodium falciparum]
Length = 1224
Score = 30.9 bits (68), Expect = 8.6
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 361 IFCNNVNNVELLAMKVTDMG-FPSYYIHSK--MKQEERNKV----FHNFSESYKYNQNNN 203
IF NN N + + + D FP+ Y+ +K + E N + H E YKY +NNN
Sbjct: 32 IFNNNNNQINNV---IYDKNVFPNNYVQNKSHINSEYVNNMDYLSLHTGIEKYKYRKNNN 88
Query: 202 NIVSGVRTD 176
N+ + + D
Sbjct: 89 NVKNMILKD 97
>gi|1723271|sp|Q10202|YAXB_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C13F4.11C
>gi|2130219|pir||S67386 hypothetical protein - fission
yeast (Schizosaccharomyces pombe)
>gi|3451298|emb|CAA20430| (AL031322) putative
atp-dependent rna helicase [Schizosaccharomyces pombe]
Length = 578
Score = 30.9 bits (68), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 82 CKILVCSDLVTRGIDNKNVNLVINFEF 2
C +LV +D+ RG+D V LVIN F
Sbjct: 467 CPVLVATDVAARGLDIPKVQLVINVTF 493
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95737547
Number of Sequences: 368476
Number of extensions: 1604612
Number of successful extensions: 5688
Number of sequences better than 10.0: 520
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 5228
Number of HSP's gapped (non-prelim): 516
length of query: 221
length of database: 112640273
effective HSP length: 53
effective length of query: 167
effective length of database: 93111045
effective search space: 15549544515
effective search space used: 15549544515
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)