BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14-32F
(592 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|417041|sp|P33195|GCSP_ECOLI GLYCINE DEHYDROGENASE [DECARBOXYL... 208 3e-53
gi|882433 (U28377) ORF_f957 [Escherichia coli] 206 7e-53
gi|1653603|dbj|BAA18516| (D90914) P protein of glycine cleavage ... 205 2e-52
gi|121083|sp|P26969|GCSP_PEA GLYCINE DEHYDROGENASE (DECARBOXYLAT... 184 4e-46
gi|3334200|sp|O49954|GCSP_SOLTU GLYCINE DEHYDROGENASE (DECARBOXY... 180 9e-45
gi|2578379|emb|CAA15464| (AL008609) glycine dehydrogenase (decar... 178 3e-44
gi|3334198|sp|O49850|GCSP_FLAAN GLYCINE DEHYDROGENASE (DECARBOXY... 177 6e-44
gi|1346117|sp|P49362|GCSB_FLAPR GLYCINE DEHYDROGENASE (DECARBOXY... 176 8e-44
gi|3334199|sp|O49852|GCSP_FLATR GLYCINE DEHYDROGENASE (DECARBOXY... 176 8e-44
gi|3688182|emb|CAA21210| (AL031804) P-Protein - like protein [Ar... 176 1e-43
gi|542103|pir||S40216 P protein - Flaveria pringlei >gi|438003|e... 176 1e-43
gi|1346116|sp|P49361|GCSA_FLAPR GLYCINE DEHYDROGENASE (DECARBOXY... 176 1e-43
gi|4504013|oth|NP_000161|PGLDC glycine dehydrogenase (decarboxyl... 176 1e-43
gi|121082|sp|P23378|GCSP_HUMAN GLYCINE DEHYDROGENASE (DECARBOXYL... 176 1e-43
gi|3413705 (AC004747) putative glycine dehydrogenase [Arabidopsi... 174 4e-43
gi|710308 (U11693) victorin binding protein [Avena sativa] 174 5e-43
gi|86275|pir||A39521 glycine dehydrogenase (decarboxylating) (EC... 173 1e-42
gi|121081|sp|P15505|GCSP_CHICK GLYCINE DEHYDROGENASE (DECARBOXYL... 173 1e-42
gi|2565305 (AF024589) glycine decarboxylase P subunit [Hordeum s... 172 2e-42
gi|2499419|sp|Q50601|GCSP_MYCTU PROBABLE GLYCINE DEHYDROGENASE (... 171 5e-42
gi|746454 (U23510) similar to glycine dehydrogenase [Caenorhabdi... 170 8e-42
gi|1346120|sp|P49095|GCSP_YEAST GLYCINE DEHYDROGENASE (DECARBOXY... 162 1e-39
gi|1169885|sp|Q09785|GCSP_SCHPO PUTATIVE GLYCINE DEHYDROGENASE (... 159 1e-38
gi|2146822|pir||S70896 aminomethyltransferase (EC 2.1.2.10) - ye... 156 1e-37
gi|2792510 (AF042072) glycine decarboxylase P subunit [Coffea ar... 141 4e-33
gi|2827418 (AF043097) glycine decarboxylase multi-enzyme complex... 141 4e-33
gi|2827420 (AF043098) glycine decarboxylase multi-enzyme complex... 139 1e-32
gi|3258439|dbj|BAA31122| (AP000007) 449aa long hypothetical glyc... 109 2e-23
gi|1730256|sp|P54376|GCS1_BACSU PROBABLE GLYCINE DEHYDROGENASE (... 106 1e-22
gi|2983571 (AE000723) glycine dehydrogenase (decarboxylating) [A... 75 4e-13
gi|1857631 (U84154) putative transposase subunit [Pseudomonas al... 38 0.057
gi|1491621|emb|CAB01605| (Z78205) UL36 [Bovine herpesvirus 1] >g... 37 0.099
gi|4520376|dbj|BAA75913| (AB024601) uridylyl transferase [Pseudo... 37 0.13
gi|106363|pir||S06705 hypothetical protein 25K protein (HTLV-1 r... 37 0.13
gi|119714|sp|P13983|EXTN_TOBAC EXTENSIN PRECURSOR (CELL WALL HYD... 36 0.29
gi|3236370 (AF064749) type VI collagen alpha 3 subunit [Mus musc... 35 0.38
gi|1107839|emb|CAA90940| (Z54213) alginate lyase [Pseudomonas ae... 34 0.65
gi|1435038|dbj|BAA07227| (D38024) ORF [Homo sapiens] 34 0.65
gi|4158178|emb|CAA18899| (AL023496) hypothetical protein [Strept... 34 0.65
gi|330915 (M76726) IR4 protein [Equine herpesvirus type 1] >gi|3... 34 0.65
gi|3879933|emb|CAA92014| (Z68011) Similarity to Xenopus F-spondi... 34 1.1
gi|2347001|dbj|BAA21906| (D31792) serine/threonine protein kinas... 34 1.1
gi|1184100 (U45958) pistil extensin-like protein [Nicotiana alata] 34 1.1
gi|4506901|oth|NP_003008|PSFRS3 splicing factor, arginine/serine... 33 1.5
gi|4495061|emb|CAB39179| (Z85986) SRP20 (SR protein family membe... 33 1.5
gi|3413391|emb|CAA20252| (AL031231) hypothetical protein SC3C3.0... 33 1.5
gi|3540281 (AF056116) All-1 related protein [Fugu rubripes] 33 1.9
gi|3378120 (AF065164) hyperpolarization-activated channel 1 [Hom... 33 1.9
gi|3334151|sp|O14427|CLA4_CANAL SERINE/THREONINE-PROTEIN KINASE ... 32 2.5
gi|467785|emb|CAA53983| (X76423) penicillin-binding protein 2 [N... 32 2.5
gi|1708827|sp|P50459|LIM2_MOUSE HOMEOBOX PROTEIN LIM-2 (LIM/HOME... 32 2.5
gi|1085983|pir||S54207 legumin precursor - Magnolia salicifolia 32 3.3
gi|2147632|pir||S68966 legumin (clone B14) precursor - Magnolia ... 32 3.3
gi|2653671 (U88587) 120 kDa style glycoprotein [Nicotiana alata] 32 3.3
gi|1362529|pir||S55262 UV-endonuclease - Neurospora crassa 32 3.3
gi|4210461|dbj|BAA74539| (D11392) UV-endonuclease [Neurospora cr... 32 3.3
gi|3005587 (AF048977) Ser/Arg-related nuclear matrix protein [Ho... 32 4.3
gi|322759|pir||PQ0479 pistil extensin-like protein (clone pMG14)... 31 5.7
gi|2494501|sp|Q64733|FKH4_MOUSE TRANSCRIPTION FACTOR FKH-4 >gi|1... 31 5.7
gi|3386334 (AF035120) type I procollagen pro-alpha 2 chain [Cani... 31 5.7
gi|322756|pir||PQ0478 pistil extensin-like protein (clone pMG07)... 31 5.7
gi|2330549|dbj|BAA21791| (D87993) PACE4E-I [Homo sapiens] 31 5.7
gi|4455041|gb|AAD21045| (AF116463) unknown [Streptomyces lincoln... 31 5.7
gi|809737|emb|CAA42184| (X59625) penicillin-binding protein 2 [N... 31 5.7
gi|2827601|emb|CAA16656| (AL021646) hypothetical protein Rv3191c... 31 5.7
gi|3876366|emb|CAA93286| (Z69360) cDNA EST yk253f12.3 comes from... 31 5.7
gi|1109849 (U41538) proline rich [Caenorhabditis elegans] 31 5.7
gi|129665|sp|P08149|PBP2_NEIGO PENICILLIN-BINDING PROTEIN 2 (PBP... 31 5.7
gi|1073198|pir||S49093 penicillin-binding protein 2 - Neisseria ... 31 5.7
gi|1073202|pir||S49098 penicillin-binding protein 2 - Neisseria ... 31 5.7
gi|129666|sp|P11882|PBP2_NEIME PENICILLIN-BINDING PROTEIN 2 (PBP... 31 5.7
gi|4092646|emb|CAA08889| (AJ009849) neuroendocrine secretory pro... 31 5.7
gi|533532 (U11295) carbamoyl phosphate synthetase (glutamine) la... 31 5.7
gi|1073197|pir||S49092 penicillin-binding protein 2 - Neisseria ... 31 5.7
gi|1073199|pir||S49095 penicillin-binding protein 2 - Neisseria ... 31 5.7
gi|730013|sp|P39970|YEN5_YEAST HYPOTHETICAL 54.6 KD PROTEIN IN M... 31 5.7
gi|2330551|dbj|BAA21792| (D87994) PACE4E-II [Homo sapiens] 31 5.7
gi|3876365|emb|CAA93285| (Z69360) cDNA EST EMBL:D66541 comes fro... 31 5.7
gi|3043646|dbj|BAA25487| (AB011133) KIAA0561 protein [Homo sapiens] 31 7.4
gi|3980411 (AC004561) putative proline-rich protein [Arabidopsis... 31 7.4
gi|1705706|sp|P54282|CCP1_RAT P-TYPE CALCIUM CHANNEL ALPHA-1 SUB... 31 7.4
gi|2588991|dbj|BAA23269| (AB001895) B120 [Homo sapiens] 31 7.4
gi|1710633|sp|P52205|ROM1_BOVIN ROD OUTER SEGMENT MEMBRANE PROTE... 31 7.4
gi|3153821 (AF062655) plenty-of-prolines-101; POP101; SH3-philo-... 31 7.4
gi|4558640|gb|AAD22670|AC007192_1 (AC007192) KIAA0561 protein [A... 31 7.4
gi|1621442 (U72027) photoreceptor disk rim specific protein rom-... 31 7.4
gi|139693|sp|P07527|WEE1_SCHPO MITOSIS INHIBITOR PROTEIN KINASE ... 31 9.7
gi|479334|pir||S33412 serine-rich protein hairless - fruit fly (... 31 9.7
gi|995557|emb|CAA61623| (X89453) DRPLA [Rattus norvegicus] 31 9.7
gi|345512|pir||A44067 109K basic protein H - fruit fly (Drosophi... 31 9.7
gi|462278|sp|Q02308|HLES_DROME HAIRLESS PROTEIN >gi|578332|emb|C... 31 9.7
gi|417693|sp|P32958|ROM1_MOUSE ROD OUTER SEGMENT MEMBRANE PROTEI... 31 9.7
gi|140778|sp|P03181|YHL1_EBV HYPOTHETICAL BHLF1 PROTEIN >gi|7391... 31 9.7
gi|4165055 (AF064260) SRC8 [Strongylocentrotus purpuratus] 31 9.7
gi|1362170|pir||S57448 DNA binding protein - rice (fragment) >gi... 31 9.7
gi|2935557 (AF049893) insulin upstream factor 1 [Homo sapiens] 31 9.7
gi|423830|pir||A45690 transactivator EBNA-2 - Herpesvirus papio ... 31 9.7
gi|4151809 (AF102855) synaptic SAPAP-interacting protein Synamon... 31 9.7
gi|467781|emb|CAA53903| (X76285) penicillin-binding protein 2 [N... 31 9.7
>gi|417041|sp|P33195|GCSP_ECOLI GLYCINE DEHYDROGENASE [DECARBOXYLATING] (GLYCINE DECARBOXYLASE)
(GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|480419|pir||S36834 glycine dehydrogenase
(decarboxylating) (EC 1.4.4.2) - Escherichia coli
>gi|304892 (L20872) gcvHP [Escherichia coli]
>gi|403345|emb|CAA52146| (X73958) glycine dehydrogenase
(decarboxylating) [Escherichia coli] >gi|1789269
(AE000373) glycine decarboxylase, P protein of glycine
cleavage system [Escherichia coli]
Length = 957
Score = 208 bits (524), Expect = 3e-53
Identities = 110/194 (56%), Positives = 136/194 (69%), Gaps = 1/194 (0%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARH-PGKHQGHQRARYGRRPQRSDALAMIKS 181
FI RHIGP A +Q MLN++G SL AL+ + P Q + G ALA +K+
Sbjct: 14 FIERHIGPDAAQQQEMLNAVGAQSLNALTGQIVPKDIQLATPPQVGAPATEYAALAELKA 73
Query: 182 IAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTM 361
IA +N+ F +YIG GY P ILRN+LENP WYTAYTPYQPE+SQGRLEALLNFQ +
Sbjct: 74 IASRNKRFTSYIGMGYTAVQLPPVILRNMLENPGWYTAYTPYQPEVSQGRLEALLNFQQV 133
Query: 362 ISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRAEP 541
DLTGL +A+ASLLDEATAAAEAM KR+SK K +++FF + HPQTLDV+RTRAE
Sbjct: 134 TLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASDVHPQTLDVVRTRAET 193
Query: 542 LGIEVVVGDERELTD 586
G EV+V D +++ D
Sbjct: 194 FGFEVIVDDAQKVLD 208
>gi|882433 (U28377) ORF_f957 [Escherichia coli]
Length = 957
Score = 206 bits (520), Expect = 7e-53
Identities = 109/194 (56%), Positives = 135/194 (69%), Gaps = 1/194 (0%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARH-PGKHQGHQRARYGRRPQRSDALAMIKS 181
FI RHIGP A +Q MLN++G SL AL+ + P Q + G ALA +K+
Sbjct: 14 FIERHIGPDAAQQQEMLNAVGAQSLNALTGQIVPKDIQLATPPQVGAPATEYAALAELKA 73
Query: 182 IAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTM 361
IA +N+ F +YIG GY P ILRN+LENP WYTAYTPYQPE+SQGRLEALLNFQ +
Sbjct: 74 IASRNKRFTSYIGMGYTAVQLPPVILRNMLENPGWYTAYTPYQPEVSQGRLEALLNFQQV 133
Query: 362 ISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRAEP 541
DLTGL +A+ASLLDEATAAAEAM KR+ K K +++FF + HPQTLDV+RTRAE
Sbjct: 134 TLDLTGLDMASASLLDEATAAAEAMAMAKRVXKLKNANRFFVASDVHPQTLDVVRTRAET 193
Query: 542 LGIEVVVGDERELTD 586
G EV+V D +++ D
Sbjct: 194 FGFEVIVDDAQKVLD 208
>gi|1653603|dbj|BAA18516| (D90914) P protein of glycine cleavage complex [Synechocystis sp.]
Length = 983
Score = 205 bits (516), Expect = 2e-52
Identities = 110/188 (58%), Positives = 139/188 (73%), Gaps = 8/188 (4%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEAL-------SARHPGKHQ-GHQRARYGRRPQRSD 160
F+ RH+GP +++ ML +LGFD+L L + R P Q ++ YG
Sbjct: 33 FLDRHLGPGETEQRQMLQTLGFDTLGDLIDQAVPPAIRFPRSLQLPASQSEYG------- 85
Query: 161 ALAMIKSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEA 340
A+A +KSIA KNQ+F++YIG GYY+ TP I RN+LENP WYTAYTPYQ EI+QGRLEA
Sbjct: 86 AIAQLKSIASKNQVFRSYIGMGYYDTITPPVIQRNILENPGWYTAYTPYQAEIAQGRLEA 145
Query: 341 LLNFQTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDV 520
LLNFQTM+ DLTGL IANASLLDE TAAAEAM +SK+K ++ FF + HPQT++V
Sbjct: 146 LLNFQTMVMDLTGLEIANASLLDEGTAAAEAMALSYGVSKSK-ANAFFVAQDCHPQTIEV 204
Query: 521 LRTRAEPLGIEVVVGD 568
++TRA PLGIEV+VGD
Sbjct: 205 IKTRANPLGIEVIVGD 220
>gi|121083|sp|P26969|GCSP_PEA GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|282926|pir||A42109 glycine dehydrogenase
(decarboxylating) (EC 1.4.4.2) component P precursor -
garden pea >gi|20741|emb|CAA42443| (X59773) component of
aminomethyltransferase [Pisum sativum]
Length = 1057
Score = 184 bits (463), Expect = 4e-46
Identities = 93/192 (48%), Positives = 129/192 (66%), Gaps = 3/192 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRP---QRSDALAMI 175
F RH ++ M S+GFD+L++L K + ++ + + +
Sbjct: 98 FPRRHNSATPDEQTKMAESVGFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHM 157
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
K +A KN++FK++IG GYYN H P ILRN++ENPAWYT YTPYQ EISQGRLE+LLNFQ
Sbjct: 158 KDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQ 217
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
TMI+DLTGLP++NASLLDE TAAAEAM+ C + K K F + + HPQT+D+ +TRA
Sbjct: 218 TMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGK-KKTFIIASNCHPQTIDICQTRA 276
Query: 536 EPLGIEVVVGDEREL 580
+ ++VVV D +++
Sbjct: 277 DGFELKVVVKDLKDI 291
>gi|3334200|sp|O49954|GCSP_SOLTU GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|2894362|emb|CAB16918| (Z99770) P-Protein precursor
[Solanum tuberosum]
Length = 1035
Score = 180 bits (451), Expect = 9e-45
Identities = 92/192 (47%), Positives = 127/192 (65%), Gaps = 3/192 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEAL---SARHPGKHQGHQRARYGRRPQRSDALAMI 175
F RH ++ M GF SL+AL + + + + ++ S + +
Sbjct: 76 FPRRHNSATPEEQTKMAEFCGFQSLDALIDATVPQSIRSESMKLPKFDSGLTESQMIEHM 135
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
+++A KN++FK+YIG GYYN + P ILRNLLENPAWYT YTPYQ EISQGRLE+LLN+Q
Sbjct: 136 QNLASKNKVFKSYIGMGYYNTYVPPVILRNLLENPAWYTQYTPYQAEISQGRLESLLNYQ 195
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
TMI+DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+D+ +TRA
Sbjct: 196 TMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGK-KKTFLIASNCHPQTIDICKTRA 254
Query: 536 EPLGIEVVVGDEREL 580
+ ++VV D +++
Sbjct: 255 DGFDLKVVTVDLKDI 269
>gi|2578379|emb|CAA15464| (AL008609) glycine dehydrogenase (decarboxylating) [Mycobacterium
leprae]
Length = 952
Score = 178 bits (447), Expect = 3e-44
Identities = 100/191 (52%), Positives = 128/191 (66%), Gaps = 9/191 (4%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRP---------QRS 157
F ARHIGP + D ML +G +SL+ L+A+ G P S
Sbjct: 13 FTARHIGPNSEDVATMLAVIGVESLDDLAAKAVPSDILDNVTDTGVAPGLDRLPPPATES 72
Query: 158 DALAMIKSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLE 337
+ LA + ++A N + + IGQGYY+ TP+ + RN+LENPAWYT YTPYQPEISQGRLE
Sbjct: 73 ETLAELGALARANTVAVSMIGQGYYDTLTPAVLSRNILENPAWYTPYTPYQPEISQGRLE 132
Query: 338 ALLNFQTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLD 517
ALLNFQT++SDLTGL IANAS+LDE TAAAEAMT R +++ S + + QT+
Sbjct: 133 ALLNFQTLVSDLTGLEIANASMLDEGTAAAEAMTLMYRAARSTAS-RVVVDVDVFAQTVA 191
Query: 518 VLRTRAEPLGIEVVVGDERE 577
V TRA+PLGI++VV D RE
Sbjct: 192 VFATRAKPLGIDIVVADLRE 211
>gi|3334198|sp|O49850|GCSP_FLAAN GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|2894358|emb|CAB16911| (Z99762) P-protein [Flaveria
anomala]
Length = 1034
Score = 177 bits (444), Expect = 6e-44
Identities = 89/191 (46%), Positives = 125/191 (64%), Gaps = 3/191 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQ---RSDALAMI 175
F RH ++ M +GF +L++L K +Y + + S +A +
Sbjct: 75 FPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHM 134
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
+ +A KN++FK++IG GYYN P+ ILRN++ENP WYT YTPYQ EI+QGRLE+LLNFQ
Sbjct: 135 QDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQ 194
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
TMI+DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+D+ +TRA
Sbjct: 195 TMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-KKTFIIASNCHPQTIDICKTRA 253
Query: 536 EPLGIEVVVGDERE 577
+ ++VV D ++
Sbjct: 254 DGFDLKVVTSDLKD 267
>gi|1346117|sp|P49362|GCSB_FLAPR GLYCINE DEHYDROGENASE (DECARBOXYLATING) B PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN B)
>gi|2130012|pir||S63536 aminomethyltransferase (EC
2.1.2.10) gdcsPB precursor - Flaveria pringlei
>gi|1000489|emb|CAA91000| (Z54239) P-protein precursor
of glycine cleavage system [Flaveria pringlei]
Length = 1034
Score = 176 bits (443), Expect = 8e-44
Identities = 89/191 (46%), Positives = 125/191 (64%), Gaps = 3/191 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQ---RSDALAMI 175
F RH ++ M +GF +L++L K +Y + + S +A +
Sbjct: 75 FPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHM 134
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
+ +A KN++FK++IG GYYN P+ ILRN++ENP WYT YTPYQ EI+QGRLE+LLNFQ
Sbjct: 135 QDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQ 194
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
TMI+DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+D+ +TRA
Sbjct: 195 TMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-KKTFIIASNCHPQTIDICKTRA 253
Query: 536 EPLGIEVVVGDERE 577
+ ++VV D ++
Sbjct: 254 DGFDLKVVTSDLKD 267
>gi|3334199|sp|O49852|GCSP_FLATR GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|2894360|emb|CAB16916| (Z99767) P-Protein precursor
[Flaveria trinervia]
Length = 1034
Score = 176 bits (443), Expect = 8e-44
Identities = 89/191 (46%), Positives = 125/191 (64%), Gaps = 3/191 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQ---RSDALAMI 175
F RH ++ M +GF +L++L K +Y + + S +A +
Sbjct: 75 FPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKAIRLDSMKYSKFDEGLTESQMIAHM 134
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
+ +A KN++FK++IG GYYN P+ ILRN++ENP WYT YTPYQ EI+QGRLE+LLNFQ
Sbjct: 135 QDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQ 194
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
TMI+DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+D+ +TRA
Sbjct: 195 TMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-KKTFIIASNCHPQTIDICKTRA 253
Query: 536 EPLGIEVVVGDERE 577
+ ++VV D ++
Sbjct: 254 DGFDLKVVTSDLKD 267
>gi|3688182|emb|CAA21210| (AL031804) P-Protein - like protein [Arabidopsis thaliana]
Length = 1037
Score = 176 bits (442), Expect = 1e-43
Identities = 90/192 (46%), Positives = 125/192 (64%), Gaps = 3/192 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKH---QGHQRARYGRRPQRSDALAMI 175
F RH ++ M GFD +++L K + +++ S + +
Sbjct: 79 FPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIRLDSMKFSKFDAGLTESQMIQHM 138
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
+A KN++FK++IG GYYN H P+ ILRN++ENPAWYT YTPYQ EISQGRLE+LLNFQ
Sbjct: 139 VDLASKNKVFKSFIGMGYYNTHVPTVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQ 198
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
T+I+DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+DV +TRA
Sbjct: 199 TVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGK-KKTFVIASNCHPQTIDVCKTRA 257
Query: 536 EPLGIEVVVGDEREL 580
+ ++VV D +++
Sbjct: 258 DGFDLKVVTSDLKDI 272
>gi|542103|pir||S40216 P protein - Flaveria pringlei >gi|438003|emb|CAA81076| (Z25857) P
protein [Flaveria pringlei]
Length = 1037
Score = 176 bits (442), Expect = 1e-43
Identities = 88/191 (46%), Positives = 125/191 (65%), Gaps = 3/191 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQ---RSDALAMI 175
F RH ++ M +GF +L++L K +Y + + S +A +
Sbjct: 78 FPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHM 137
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
+ +A KN++FK++IG GYYN P+ ILRN++ENP WYT YTPYQ EI+QGRLE+LLNFQ
Sbjct: 138 QDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQ 197
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
TM++DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+D+ +TRA
Sbjct: 198 TMVTDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-KKTFIIASNCHPQTIDICKTRA 256
Query: 536 EPLGIEVVVGDERE 577
+ ++VV D ++
Sbjct: 257 DGFDLKVVTSDLKD 270
>gi|1346116|sp|P49361|GCSA_FLAPR GLYCINE DEHYDROGENASE (DECARBOXYLATING) A PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN A)
>gi|2130011|pir||S63535 aminomethyltransferase (EC
2.1.2.10) gdcsPA precursor - Flaveria pringlei
>gi|608712|emb|CAA85353| (Z36879) P-protein of the
glycine cleavage system [Flaveria pringlei]
Length = 1037
Score = 176 bits (442), Expect = 1e-43
Identities = 88/191 (46%), Positives = 125/191 (65%), Gaps = 3/191 (1%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQ---RSDALAMI 175
F RH ++ M +GF +L++L K +Y + + S +A +
Sbjct: 78 FPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHM 137
Query: 176 KSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQ 355
+ +A KN++FK++IG GYYN P+ ILRN++ENP WYT YTPYQ EI+QGRLE+LLNFQ
Sbjct: 138 QDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQ 197
Query: 356 TMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRA 535
TM++DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+D+ +TRA
Sbjct: 198 TMVTDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-KKTFIIASNCHPQTIDICKTRA 256
Query: 536 EPLGIEVVVGDERE 577
+ ++VV D ++
Sbjct: 257 DGFDLKVVTSDLKD 270
>gi|4504013|oth|NP_000161|PGLDC glycine dehydrogenase (decarboxylating; glycine decarboxylase,
glycine cleavage system protein P) >gi|87571|pir||B39521
glycine dehydrogenase (decarboxylating) (EC 1.4.4.2)
precursor - human >gi|190209 (M64590) glycine
decarboxylase [Homo sapiens] >gi|219660|dbj|BAA14286|
(D90239) glycine decarboxylase precursor [Homo sapiens]
Length = 1020
Score = 176 bits (441), Expect = 1e-43
Identities = 90/183 (49%), Positives = 123/183 (67%), Gaps = 1/183 (0%)
Query: 2 EFIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQ-RSDALAMIK 178
+F RHIGP D++ ML +LG S++ L + + +R P ++ LA +
Sbjct: 62 DFARRHIGPGDKDQREMLQTLGLASIDELIEKTVPANIRLKRPLKMEDPVCENEILATLH 121
Query: 179 SIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQT 358
+I+ KNQ++++YIG GYYNC P ILRNLLEN W T YTPYQPE+SQGRLE+LLN+QT
Sbjct: 122 AISSKNQIWRSYIGMGYYNCSVPQTILRNLLENSGWITQYTPYQPEVSQGRLESLLNYQT 181
Query: 359 MISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRAE 538
M+ D+TGL +ANASLLDE TAAAEA+ C R +K + +F HPQT+ V++TRA+
Sbjct: 182 MVCDITGLDMANASLLDEGTAAAEALQLCYRHNKRR---KFLVDPRCHPQTIAVVQTRAK 238
Query: 539 PLGI 550
G+
Sbjct: 239 YTGV 242
>gi|121082|sp|P23378|GCSP_HUMAN GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|87570|pir||JN0124 glycine dehydrogenase
(decarboxylating) (EC 1.4.4.2) - human >gi|190287
(M63635) glycine decarboxylase [Homo sapiens]
Length = 1020
Score = 176 bits (441), Expect = 1e-43
Identities = 90/183 (49%), Positives = 123/183 (67%), Gaps = 1/183 (0%)
Query: 2 EFIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQ-RSDALAMIK 178
+F RHIGP D++ ML +LG S++ L + + +R P ++ LA +
Sbjct: 62 DFARRHIGPGDKDQREMLQTLGLASIDELIEKTVPANIRLKRPLKMEDPVCENEILATLH 121
Query: 179 SIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQT 358
+I+ KNQ++++YIG GYYNC P ILRNLLEN W T YTPYQPE+SQGRLE+LLN+QT
Sbjct: 122 AISSKNQIWRSYIGMGYYNCSVPQTILRNLLENSGWITQYTPYQPEVSQGRLESLLNYQT 181
Query: 359 MISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRAE 538
M+ D+TGL +ANASLLDE TAAAEA+ C R +K + +F HPQT+ V++TRA+
Sbjct: 182 MVCDITGLDMANASLLDEGTAAAEALQLCYRHNKRR---KFLVDPRCHPQTIAVVQTRAK 238
Query: 539 PLGI 550
G+
Sbjct: 239 YTGV 242
>gi|3413705 (AC004747) putative glycine dehydrogenase [Arabidopsis thaliana]
Length = 1044
Score = 174 bits (437), Expect = 4e-43
Identities = 91/192 (47%), Positives = 122/192 (63%), Gaps = 4/192 (2%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYG----RRPQRSDALAM 172
F RH ++ M N GFD+L L K ++ S +
Sbjct: 84 FPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEH 143
Query: 173 IKSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNF 352
+ +A KN++FK++IG GYYN H P ILRN++ENPAWYT YTPYQ EISQGRLE+LLN+
Sbjct: 144 MSDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNY 203
Query: 353 QTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTR 532
QT+I+DLTGLP++NASLLDE TAAAEAM C + K K F + + HPQT+DV +TR
Sbjct: 204 QTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGK-KKTFVIASNCHPQTIDVCKTR 262
Query: 533 AEPLGIEVVVGDEREL 580
A+ ++VV D +++
Sbjct: 263 ADGFDLKVVTVDIKDV 278
>gi|710308 (U11693) victorin binding protein [Avena sativa]
Length = 1032
Score = 174 bits (436), Expect = 5e-43
Identities = 91/191 (47%), Positives = 126/191 (65%), Gaps = 4/191 (2%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEAL-SARHPGKHQGHQRARYGRRPQ---RSDALAM 172
F RH ++ M ++ GF++L++L A P + G+ S L
Sbjct: 71 FPRRHNSASPAEQTVMASTCGFNTLDSLIDATVPAAIRAPPMQFTGKFDAGFTESQMLEH 130
Query: 173 IKSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNF 352
+ +A N+++K++IG GYYN H P+ ILRNL+ENPAWYT YTPYQ EI+QGRLE+LLN+
Sbjct: 131 MAHLASMNKVYKSFIGMGYYNTHIPAVILRNLMENPAWYTQYTPYQAEIAQGRLESLLNY 190
Query: 353 QTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTR 532
QTM++DLTGLP++NASLLDEATAAAEAM C + K K F + + HPQT+D+ +TR
Sbjct: 191 QTMVADLTGLPMSNASLLDEATAAAEAMAMCNGILKAK-KKTFLIASNCHPQTIDICQTR 249
Query: 533 AEPLGIEVVVGDERE 577
A + VVV D ++
Sbjct: 250 AAGFDLNVVVSDAKD 264
>gi|86275|pir||A39521 glycine dehydrogenase (decarboxylating) (EC 1.4.4.2) precursor -
chicken
Length = 1003
Score = 173 bits (433), Expect = 1e-42
Identities = 84/171 (49%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Query: 2 EFIARHIGPRAGDEQAMLNSLGFDSLEALSARH-PGKHQGHQRARYGRRPQRSDALAMIK 178
+F RHIGPR +++ ML+++G S+E L + P + + R ++ L +
Sbjct: 51 DFCRRHIGPREREKREMLSAVGVQSVEELMDKTIPASIRLRRPLRMDDHVVENEILETLY 110
Query: 179 SIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQT 358
+IA KN+++++YIG GYYNC P PI RNLLEN W T YTPYQPE+SQGRLE+LLN+QT
Sbjct: 111 NIASKNKIWRSYIGMGYYNCSVPQPIARNLLENAGWVTQYTPYQPEVSQGRLESLLNYQT 170
Query: 359 MISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTL 514
M+ D+TG+ +ANASLLDE TAAAEAM C R +K + +F+ HPQT+
Sbjct: 171 MVCDITGMDVANASLLDEGTAAAEAMQLCHRQNKRR---KFYIDARCHPQTI 219
>gi|121081|sp|P15505|GCSP_CHICK GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|212585 (M64402) glycine decarboxylase [Gallus
gallus] >gi|222821|dbj|BAA14313| (D90266) glycine
decarboxylase precursor [Gallus gallus]
Length = 1004
Score = 173 bits (433), Expect = 1e-42
Identities = 84/171 (49%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Query: 2 EFIARHIGPRAGDEQAMLNSLGFDSLEALSARH-PGKHQGHQRARYGRRPQRSDALAMIK 178
+F RHIGPR +++ ML+++G S+E L + P + + R ++ L +
Sbjct: 52 DFCRRHIGPREREKREMLSAVGVQSVEELMDKTIPASIRLRRPLRMDDHVVENEILETLY 111
Query: 179 SIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQT 358
+IA KN+++++YIG GYYNC P PI RNLLEN W T YTPYQPE+SQGRLE+LLN+QT
Sbjct: 112 NIASKNKIWRSYIGMGYYNCSVPQPIARNLLENAGWVTQYTPYQPEVSQGRLESLLNYQT 171
Query: 359 MISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTL 514
M+ D+TG+ +ANASLLDE TAAAEAM C R +K + +F+ HPQT+
Sbjct: 172 MVCDITGMDVANASLLDEGTAAAEAMQLCHRQNKRR---KFYIDARCHPQTI 220
>gi|2565305 (AF024589) glycine decarboxylase P subunit [Hordeum sp. x Triticum
sp.]
Length = 1031
Score = 172 bits (431), Expect = 2e-42
Identities = 92/191 (48%), Positives = 124/191 (64%), Gaps = 4/191 (2%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEAL-SARHPGKHQGHQRARYGRRPQ---RSDALAM 172
F RH ++ M + GF++L+AL A P + G+ S L
Sbjct: 70 FPRRHNSATPAEQAVMASECGFNTLDALIDATVPAAIRAPPMQFTGKFDAGFTESQMLEH 129
Query: 173 IKSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNF 352
+ +A N+ +K++IG GYYN H P+ ILRNL+ENPAWYT YTPYQ EI+QGRLE+LLN+
Sbjct: 130 MAHLASMNKTYKSFIGMGYYNTHIPAVILRNLMENPAWYTQYTPYQAEIAQGRLESLLNY 189
Query: 353 QTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTR 532
QTM++DLTGLP++NASLLDEATAAAEAM C + K+K F + + HPQT+D+ +TR
Sbjct: 190 QTMVADLTGLPMSNASLLDEATAAAEAMAMCLGIVKSK-KKTFLIASNCHPQTIDICQTR 248
Query: 533 AEPLGIEVVVGDERE 577
A I VVV ++
Sbjct: 249 ATGFDINVVVSAAKD 263
>gi|2499419|sp|Q50601|GCSP_MYCTU PROBABLE GLYCINE DEHYDROGENASE (DECARBOXYLATING) (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|1483539|emb|CAB01470| (Z78020) gcvB [Mycobacterium
tuberculosis]
Length = 941
Score = 171 bits (428), Expect = 5e-42
Identities = 97/190 (51%), Positives = 123/190 (64%), Gaps = 9/190 (4%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRP---------QRS 157
F RHIG + ML +G DSL+ L+ + G P +
Sbjct: 7 FADRHIGLDSQAVATMLAVIGVDSLDDLAVKAVPAGILDTLTDTGAAPGLDSLPPAASEA 66
Query: 158 DALAMIKSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLE 337
+ALA ++++A N + + IGQGYY+ HTP +LRN++ENPAWYTAYTPYQPEISQGRLE
Sbjct: 67 EALAELRALADANTVAVSMIGQGYYDTHTPPVLLRNIIENPAWYTAYTPYQPEISQGRLE 126
Query: 338 ALLNFQTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLD 517
ALLNFQT+++DLTGL IANAS+LDE TAAAEAMT R ++ + QT
Sbjct: 127 ALLNFQTLVTDLTGLEIANASMLDEGTAAAEAMTLMHRAARGP-VKRVVVDADVFTQTAA 185
Query: 518 VLRTRAEPLGIEVVVGDER 574
VL TRA+PLGIE+V D R
Sbjct: 186 VLATRAKPLGIEIVTADLR 204
>gi|746454 (U23510) similar to glycine dehydrogenase [Caenorhabditis elegans]
Length = 979
Score = 170 bits (426), Expect = 8e-42
Identities = 87/191 (45%), Positives = 125/191 (64%), Gaps = 1/191 (0%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARH-PGKHQGHQRARYGRRPQRSDALAMIKS 181
F+ RHIGPR ++Q ML+ +G+ L+ L+ + P + + L +++
Sbjct: 30 FVDRHIGPRRLEQQQMLDFIGYKDLDDLTGTNVPNMIKAEKALELPAPLDEYKMLKELEA 89
Query: 182 IAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTM 361
IA +N+++++YIG GYY+ P+ I RN+L+N W + YTPYQ EISQGRLE+LLNFQTM
Sbjct: 90 IAAQNKIYRSYIGMGYYDTIVPAVISRNILQNIGWISQYTPYQAEISQGRLESLLNFQTM 149
Query: 362 ISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRAEP 541
I+++TGLP NASLLDEATA+AEA+ R +K ++ HPQ LDV+RTR+ P
Sbjct: 150 IAEMTGLPTTNASLLDEATASAEAVALAARTTKR---NKIVVDSFCHPQNLDVIRTRSGP 206
Query: 542 LGIEVVVGDERE 577
LGI++ V D E
Sbjct: 207 LGIDIEVSDSIE 218
>gi|1346120|sp|P49095|GCSP_YEAST GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|1078211|pir||S50917 aminomethyltransferase (EC
2.1.2.10) - yeast (Saccharomyces cerevisiae)
>gi|642281|emb|CAA87810| (Z47815) putative glycine
dehydrogenase [Saccharomyces cerevisiae] >gi|676871
(U20641) glycine decarboxylase [Saccharomyces
cerevisiae] >gi|1589242|prf||2210375A Gly
decarboxylase:SUBUNIT=P [Saccharomyces cerevisiae]
Length = 1034
Score = 162 bits (407), Expect = 1e-39
Identities = 91/188 (48%), Positives = 116/188 (61%), Gaps = 5/188 (2%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQRS----DALAM 172
F RH+GP D + ML ++G+ L A + +R P + + L
Sbjct: 67 FARRHLGPSPSDVKKMLKTMGYSDLNAFIEELVPPNILKRRPLKLEAPSKGFCEQEMLQH 126
Query: 173 IKSIAGKNQL-FKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLN 349
++ IA KN K +IG+GYY P I RNLLE+P WYT+YTPYQPEISQGRLEALLN
Sbjct: 127 LEKIANKNHYKVKNFIGKGYYGTILPPVIQRNLLESPEWYTSYTPYQPEISQGRLEALLN 186
Query: 350 FQTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRT 529
FQT++SDLTGLP+ANASLLDE TAA EAM +S+ K ++ H QT VL T
Sbjct: 187 FQTVVSDLTGLPVANASLLDEGTAAGEAMLLSFNISRKK-KLKYVIDKKLHQQTKSVLHT 245
Query: 530 RAEPLGIEVVVGD 568
RA+P IE++ D
Sbjct: 246 RAKPFNIEIIEVD 258
>gi|1169885|sp|Q09785|GCSP_SCHPO PUTATIVE GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|2130270|pir||S62435 hypothetical protein
SPAC13G6.06c - fission yeast (Schizosaccharomyces pombe)
>gi|1008991|emb|CAA91099| (Z54308) putative glycine
dehydrogenase (decarboxylase) [Schizosaccharomyces
pombe]
Length = 1017
Score = 159 bits (398), Expect = 1e-38
Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 13/184 (7%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEAL-------SARHPGKHQ---GHQRARYGRRP-- 148
F RHIGP D+Q L SLG+ ++ S R P G P
Sbjct: 49 FEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNEKNPPVN 108
Query: 149 -QRSDALAMIKSIAGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQ 325
S+ + ++A +N+L K++IG GYYN P+ I RN+LENP WYT YTPYQ EISQ
Sbjct: 109 YSESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPYQAEISQ 168
Query: 326 GRLEALLNFQTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHP 505
GRLE+++N+QTMI+DLTGL I+NASLLDE TAA EAM K K F + +P
Sbjct: 169 GRLESMMNYQTMIADLTGLSISNASLLDEGTAAGEAMVMLMANDKKK-RKTFLVDKNIYP 227
Query: 506 QTLDVLRTRAEPLGIEV 556
TL VLRTRA GI++
Sbjct: 228 NTLSVLRTRASGFGIKI 244
>gi|2146822|pir||S70896 aminomethyltransferase (EC 2.1.2.10) - yeast (Saccharomyces
cerevisiae)
Length = 1034
Score = 156 bits (391), Expect = 1e-37
Identities = 90/188 (47%), Positives = 114/188 (59%), Gaps = 5/188 (2%)
Query: 5 FIARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQRSD----ALAM 172
F RH+GP + ML ++G+ L A + +R P + +L
Sbjct: 67 FARRHLGPSPSVVKKMLKTMGYSDLNAFIEELVPPNILKRRPLKLEAPSKGFCEQVSLQH 126
Query: 173 IKSIAGKNQL-FKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLN 349
++ IA KN K +IG+GYY P I RNLLE+P WYT+YTPYQPEISQGRLEALLN
Sbjct: 127 LEKIANKNHYKVKNFIGKGYYGTILPPVIQRNLLESPEWYTSYTPYQPEISQGRLEALLN 186
Query: 350 FQTMISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRT 529
FQT++SDLTGLP+ANASLLDE TAA EAM +S+ K ++ H QT VL T
Sbjct: 187 FQTVVSDLTGLPVANASLLDEGTAAGEAMLLSFNISRKK-KLKYVIDKKLHQQTKSVLHT 245
Query: 530 RAEPLGIEVVVGD 568
RA P IE++ D
Sbjct: 246 RALPFNIEIIEVD 258
>gi|2792510 (AF042072) glycine decarboxylase P subunit [Coffea arabica]
>gi|2827422 (AF043099) glycine decarboxylase
multi-enzyme complex P subunit [Coffea eugenioides]
Length = 142
Score = 141 bits (352), Expect = 4e-33
Identities = 73/138 (52%), Positives = 95/138 (67%), Gaps = 3/138 (2%)
Query: 14 RHIGPRAGDEQAMLNSLGFDSLEALSARHPGKH---QGHQRARYGRRPQRSDALAMIKSI 184
RH ++ M+ + GF SL++L K G +++ + + ++ +
Sbjct: 2 RHNSATPEEQIKMVENCGFPSLDSLIDATVPKSIRLDGMTFSKFDEGLTEAQMIDHMQKL 61
Query: 185 AGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTMI 364
A KN++FK+YIG GYYN P ILRNLLENPAWYT YTPYQ EISQGRLE+LLN+QTMI
Sbjct: 62 ASKNKVFKSYIGMGYYNTFVPPVILRNLLENPAWYTQYTPYQAEISQGRLESLLNYQTMI 121
Query: 365 SDLTGLPIANASLLDEATAAA 427
+DLTGLP++NASLLDE TAAA
Sbjct: 122 ADLTGLPMSNASLLDEGTAAA 142
>gi|2827418 (AF043097) glycine decarboxylase multi-enzyme complex P subunit
[Coffea canephora]
Length = 142
Score = 141 bits (352), Expect = 4e-33
Identities = 73/138 (52%), Positives = 95/138 (67%), Gaps = 3/138 (2%)
Query: 14 RHIGPRAGDEQAMLNSLGFDSLEALSARHPGKH---QGHQRARYGRRPQRSDALAMIKSI 184
RH ++ M+ + GF SL++L K G +++ + + ++ +
Sbjct: 2 RHNSATPEEQIKMVENCGFPSLDSLIDATVPKSIRLDGMTFSKFDEGLTEAQMIDHMEKL 61
Query: 185 AGKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTMI 364
A KN++FK+YIG GYYN P ILRNLLENPAWYT YTPYQ EISQGRLE+LLN+QTMI
Sbjct: 62 ASKNKVFKSYIGMGYYNTFVPPVILRNLLENPAWYTQYTPYQAEISQGRLESLLNYQTMI 121
Query: 365 SDLTGLPIANASLLDEATAAA 427
+DLTGLP++NASLLDE TAAA
Sbjct: 122 ADLTGLPMSNASLLDEGTAAA 142
>gi|2827420 (AF043098) glycine decarboxylase multi-enzyme complex P subunit
[Coffea congensis]
Length = 142
Score = 139 bits (347), Expect = 1e-32
Identities = 71/126 (56%), Positives = 91/126 (71%), Gaps = 3/126 (2%)
Query: 50 MLNSLGFDSLEALSARHPGKH---QGHQRARYGRRPQRSDALAMIKSIAGKNQLFKTYIG 220
M+ + GF SL++L K G +++ + + ++ +A KN++FK+YIG
Sbjct: 14 MVENCGFPSLDSLIDATVPKSIRLDGMTFSKFDEGLTEAQMIDHMEKLASKNKVFKSYIG 73
Query: 221 QGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTMISDLTGLPIANAS 400
GYYN P ILRNLLENPAWYT YTPYQ EISQGRLE+LLN+QTMI+DLTGLP++NAS
Sbjct: 74 MGYYNTFVPPVILRNLLENPAWYTQYTPYQAEISQGRLESLLNYQTMIADLTGLPMSNAS 133
Query: 401 LLDEATAAA 427
LLDE TAAA
Sbjct: 134 LLDEGTAAA 142
>gi|3258439|dbj|BAA31122| (AP000007) 449aa long hypothetical glycine dehydrogenase subunit 1
[Pyrococcus horikoshii]
Length = 449
Score = 109 bits (269), Expect = 2e-23
Identities = 69/194 (35%), Positives = 104/194 (53%), Gaps = 5/194 (2%)
Query: 8 IARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQRSDALAMIKSIA 187
+ H P + ++ ML +G S+E L A P K + + + I
Sbjct: 1 MGNHYIPNSAHKEEMLKEIGLSSIEELFADIPEKFI-KEELNLPEGKSEYEVFLEMNEIL 59
Query: 188 GKNQL---FKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQT 358
KN+ T++G G Y + P+ + ++L+E + T+YTPYQPEISQG L+AL +Q+
Sbjct: 60 EKNKTVLEMPTFLGAGTYFHYIPAHV-KHLIERSEFLTSYTPYQPEISQGMLQALFEYQS 118
Query: 359 MISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRAE 538
+I++L GLP+ N+S+ D TA AEA RL K K +F H+HP+ L VLRT
Sbjct: 119 LIAELVGLPVVNSSMYDWGTAMAEAALMTVRLHKGK-RKKFVVPKHTHPERLQVLRTYTR 177
Query: 539 PLGIEVVV--GDERELTDV 589
+E+V +ER DV
Sbjct: 178 GPEVEIVTVNWNERGQVDV 196
>gi|1730256|sp|P54376|GCS1_BACSU PROBABLE GLYCINE DEHYDROGENASE (DECARBOXYLATING) SUBUNIT 1 (GLYCINE
DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P-PROTEIN)
>gi|1303891|dbj|BAA12547| (D84432) YqhJ [Bacillus
subtilis] >gi|2634890|emb|CAB14387| (Z99116) similar to
glycine dehydrogenase [Bacillus subtilis]
Length = 448
Score = 106 bits (262), Expect = 1e-22
Identities = 64/182 (35%), Positives = 105/182 (57%), Gaps = 3/182 (1%)
Query: 14 RHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQRSDALAMIKSIAGK 193
R++ D+Q ML ++G S++ L A P + + + + ++ + +A K
Sbjct: 4 RYLPATEKDKQEMLATIGVSSIDDLFADIPENVKYKKEHQIKKAKSETELTRELTKLASK 63
Query: 194 NQ---LFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTMI 364
N+ + +++G G Y+ + P I+ +++ +YTAYTPYQPEISQG L+A+ FQTMI
Sbjct: 64 NRDTVQYASFLGAGVYDHYQPV-IVDHVISRSEFYTAYTPYQPEISQGELQAIFEFQTMI 122
Query: 365 SDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHQFFASIHSHPQTLDVLRTRAEPL 544
+LTG+ IAN+S+ D TA AEA +K K + S HP++ +VL+T A+
Sbjct: 123 CELTGMDIANSSMYDGGTALAEAAMLASGHTKKK---KIVVSKTVHPESREVLKTYAKGQ 179
Query: 545 GIEVV 559
I+VV
Sbjct: 180 YIDVV 184
>gi|2983571 (AE000723) glycine dehydrogenase (decarboxylating) [Aquifex
aeolicus]
Length = 439
Score = 74.9 bits (181), Expect = 4e-13
Identities = 47/144 (32%), Positives = 78/144 (53%)
Query: 38 DEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRPQRSDALAMIKSIAGKNQLFKTYI 217
+ + +L+ LG +SLE L + P K + + + + + +L +I
Sbjct: 10 ETKEILSKLGLESLEDLFSHIP-KELFAKDFSFPEPKSEEELRRIFERACEDTELPLYFI 68
Query: 218 GQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTMISDLTGLPIANA 397
G G Y+ PS ++ +L + T YTPYQ E SQG L+A+ +Q++I +LTG+ +ANA
Sbjct: 69 GAGAYDRIIPS-VIWQILSRGEFLTPYTPYQAEASQGTLQAIFEYQSLICELTGMDVANA 127
Query: 398 SLLDEATAAAEAMTFCKRLSKNKG 469
S+ D A+A AEA+ + + K KG
Sbjct: 128 SMYDGASALAEAVLMARAI-KGKG 150
>gi|1857631 (U84154) putative transposase subunit [Pseudomonas alcaligenes]
Length = 440
Score = 37.9 bits (86), Expect = 0.057
Identities = 41/152 (26%), Positives = 55/152 (35%), Gaps = 3/152 (1%)
Query: 76 ARSPERQASRKASRAP--ACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAV 249
A+ P + A R ++ P AC V T + D H R++PA P LP
Sbjct: 56 AQGPAQHAGRAHAQEPSRACRVDATTADPLGRADRAEHRRRDPAHPRTAHPSAAGLP--- 112
Query: 250 ANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCR 429
G PG HP P +N P R A LP+R R +
Sbjct: 113 -------GLPG-----HPAPGQN-----------------PRRSAPGVGLPSRHQPRHVQ 143
Query: 430 SHDLLQTPEQEQGQPPILRLDPQPSA-NPRRTAHP 531
+ P G+P P P+A PR+ A P
Sbjct: 144 LQEPRIDPAPGAGEPAAGPAAPAPAAGRPRQPARP 178
>gi|1491621|emb|CAB01605| (Z78205) UL36 [Bovine herpesvirus 1] >gi|2653311|emb|CAA06097|
(AJ004801) very large virion protein (tegument) [Bovine
herpesvirus type 1.1]
Length = 3247
Score = 37.1 bits (84), Expect = 0.099
Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 220 PGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPA----- 384
PGL P V P + P R P PA P PP A E P P RPA
Sbjct: 2817 PGLPLPPSRVQAPVDAPAPPPAPERPAPPPAPERPAPP-PAPERPAPPPAPERPAPPPAP 2875
Query: 385 DRQRLP--ARRSHRRCRSHDLLQTPEQE---QGQPPILRLDPQPSANPRRTAHPCRAA 543
+R P R +S + P Q P +LR P P P A P A
Sbjct: 2876 ERPAPPPAPERPATAVQSGSKIPAPSNALVGQVAPALLRRGPSPRGKPGAPARPTGGA 2933
>gi|4520376|dbj|BAA75913| (AB024601) uridylyl transferase [Pseudomonas aeruginosa]
Length = 900
Score = 36.7 bits (83), Expect = 0.13
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 181 HCRQEPAVQNL--HRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELP 354
H R +P L +P L A PA G+PG P A PRP + P
Sbjct: 591 HQRHQPDALELLARQPAPAALHRDQARPAPRPGEPGGPRGADPPDADRGPRPTGTQRHRP 650
Query: 355 DHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPP 477
+ PA R+ LPA RR +H +G PP
Sbjct: 651 GRCRAVMEPARRRLLPAPHRRRRGLAH---------RGDPP 682
>gi|106363|pir||S06705 hypothetical protein 25K protein (HTLV-1 related endogenous
sequence HRES-1/1) - human >gi|38035|emb|CAA34646|
(X16660) p25 protein [Homo sapiens]
Length = 223
Score = 36.7 bits (83), Expect = 0.13
Identities = 35/94 (37%), Positives = 47/94 (49%), Gaps = 9/94 (9%)
Query: 259 AQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHD 438
+Q+ P V RL P P+ PRS P H +RP RP D + PAR S+RR R+
Sbjct: 27 SQAQTPPRSVPRLRP--RHRHPQDPRSPGPAPRH-RRPPRP-DPRAPPARASYRRFRTWP 82
Query: 439 LLQTPEQEQGQP--------PILRLDPQ-PSANPRRTAHPCRA 540
+ E+ + P P RL + P A RR P R+
Sbjct: 83 SATSWERRRLSPGHRALARGPPARLGGEGPGAGDRRREGPDRS 125
>gi|119714|sp|P13983|EXTN_TOBAC EXTENSIN PRECURSOR (CELL WALL HYDROXYPROLINE-RICH GLYCOPROTEIN)
>gi|82169|pir||S06733 hydroxyproline-rich glycoprotein
precursor - common tobacco >gi|19867|emb|CAA32090|
(X13885) extensin (AA 1-620) [Nicotiana tabacum]
Length = 620
Score = 35.6 bits (80), Expect = 0.29
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 298 HPLPARNFPRPPRSAAELPDHDQRP------HRPADRQRLPARRSHRRCRSHDLLQTPEQ 459
HP P+ P P LP H QRP H P P R H SH P +
Sbjct: 117 HPPPSYGAPPPSHGPGHLPSHGQRPPSPSHGHAPPSGGHTPPRGQHP--PSHRRPSPPSR 174
Query: 460 EQGQPPILRLDPQPS 504
PP P P+
Sbjct: 175 HGHPPPPTYAQPPPT 189
Score = 31.3 bits (69), Expect = 5.7
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 256 PAQSAGKPGLVH-----RLHPLPARNFPRPPRSA-AELPDHDQ---------RPHRPADR 390
PA S P ++ ++ PLP P PPR P H Q +P P
Sbjct: 477 PAYSPPPPSPIYSPPPPQVQPLPPTFSPPPPRRIHLPPPPHRQPRPPTPTYGQPPSPPTF 536
Query: 391 QRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAH 528
P R+ H H +TP GQPP P SA P R H
Sbjct: 537 SPPPPRQIHSPPPPHWQPRTPTPTYGQPP---SPPTFSAPPPRQIH 579
>gi|3236370 (AF064749) type VI collagen alpha 3 subunit [Mus musculus]
Length = 2657
Score = 35.2 bits (79), Expect = 0.38
Identities = 34/108 (31%), Positives = 46/108 (42%)
Query: 85 PERQASRKASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQ 264
P+ +A APA ASAK P +H + PA RP P A P
Sbjct: 2298 PDPAKPAQARPAPA----KPASAKLVP-PQPVHVQPAPAQTASVRPA----PAKPAPPQP 2348
Query: 265 SAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPAR 408
+A KP V +PA+ P P +A +P P +PA Q +PA+
Sbjct: 2349 AAAKP--VPAKPAVPAQPAPPQPAAAKPVPAKPAVPAQPAAAQPMPAQ 2394
>gi|1107839|emb|CAA90940| (Z54213) alginate lyase [Pseudomonas aeruginosa]
Length = 684
Score = 34.4 bits (77), Expect = 0.65
Identities = 56/153 (36%), Positives = 68/153 (43%), Gaps = 35/153 (22%)
Query: 115 RAPAC-SVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPH---------AVANPAQ 264
RAPA S W + P D+ R+ ++L R G H AV P +
Sbjct: 397 RAPASGSPWAYGEVRHPPACDRPRNRR----RSLARRGQADRTHLRRNHRRRAAVLRPFR 452
Query: 265 SAGKPGLVHRLHPLPARNFPRPPRSAAE-----LPDHDQRPHRPADRQRLPARRSHRRCR 429
S G+P H AR PR P AE P +R HR A R+ +HRR R
Sbjct: 453 S-GRPAT----HGRAARRPPRSPGDPAEPLGRGRPGARRRRHR-AGRRSAAGGGAHRRIR 506
Query: 430 S--HDLLQT----------PEQEQGQPPILRL--------DPQPSANPRRTAHPCRAAGY 549
H L P + G P +R D QP RR RAAG
Sbjct: 507 RARHRQLHLLRLSAPGRGLPLRRTGLPAAVRTLRQPGRSWDDQPDRVVRRNDRQRRAAGS 566
Query: 550 RSRCGRRA 573
R R RA
Sbjct: 567 RRRLSSRA 574
>gi|1435038|dbj|BAA07227| (D38024) ORF [Homo sapiens]
Length = 853
Score = 34.4 bits (77), Expect = 0.65
Identities = 34/100 (34%), Positives = 43/100 (43%)
Query: 217 RPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQR 396
R GLL P AV +PA+ G P L P P+ F RP +A LP P+D
Sbjct: 424 RAGLLAAPAAVHSPAEVHGSPPA--SLCPRPSVKF-RPGLTAMALP-------TPSD-ST 472
Query: 397 LPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPR 516
LPA + R R L+ TP Q + +P P R
Sbjct: 473 LPA-EARGRGRPRRLVWTPSQSEALRACFERNPYPGIATR 511
>gi|4158178|emb|CAA18899| (AL023496) hypothetical protein [Streptomyces coelicolor]
Length = 191
Score = 34.4 bits (77), Expect = 0.65
Identities = 28/76 (36%), Positives = 30/76 (38%), Gaps = 4/76 (5%)
Query: 361 DQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHPC-- 534
D+R RP LP R+ H R H Q QPP P RRTAH
Sbjct: 43 DRRGRRPRRDHELPGRQQHLHLRRHPGHHGRGPRQPQPPPGARPPGQRPARRRTAHRTPA 102
Query: 535 --RAAGYRSRCGRRA*TD*R 588
R G G RA TD R
Sbjct: 103 RRRRPGAARARGTRARTDDR 122
>gi|330915 (M76726) IR4 protein [Equine herpesvirus type 1] >gi|330924
(M25345) ORF S1-2 [Equine herpesvirus type 1]
Length = 469
Score = 34.4 bits (77), Expect = 0.65
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 250 ANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSH---- 417
+NP+ P + R P PA P P S P +RP RP+ PA+ S
Sbjct: 66 SNPSSGDPGPAQLRRPRPSPAPATPAQPSSGDPGPAQLRRP-RPSPAPATPAQPSSGDPG 124
Query: 418 ----RRCRSHDLLQTPEQ-EQGQP-PILRLDPQPSANPRRTAHP 531
RR R TP Q G P P P+PS P A P
Sbjct: 125 PAQLRRPRPSPAPATPAQPSSGDPGPAQLRRPRPSPAPATPAQP 168
Score = 34.0 bits (76), Expect = 0.85
Identities = 39/126 (30%), Positives = 46/126 (35%), Gaps = 8/126 (6%)
Query: 193 EPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRP 372
+P L RP P A P+ P + R P PA P P S P +RP
Sbjct: 72 DPGPAQLRRPRPSPAPATPAQPSSGDPGPAQLRRPRPSPAPATPAQPSSGDPGPAQLRRP 131
Query: 373 HRPADRQRLPARRSH--------RRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAH 528
RP+ PA+ S RR R TP Q DP P A P
Sbjct: 132 -RPSPAPATPAQPSSGDPGPAQLRRPRPSPAPATPAQPSSG------DPGP-AMPH--GQ 181
Query: 529 PCRAAGYRSRCGRR 570
PC A R +R
Sbjct: 182 PCGACDGSCRMAQR 195
>gi|3879933|emb|CAA92014| (Z68011) Similarity to Xenopus F-spondin precursor (PIR Acc. No.
A47723); cDNA EST EMBL:D33135 comes from this gene; cDNA
EST EMBL:D35886 comes from this gene; cDNA EST
EMBL:D68683 comes from this gene; cDNA EST EMBL:D65303
com...
Length = 788
Score = 33.6 bits (75), Expect = 1.1
Identities = 31/97 (31%), Positives = 45/97 (45%), Gaps = 4/97 (4%)
Query: 256 PAQSAGKPGLVHRLHPLPARNF-PRPPRSAAELPDHDQRPHRPADRQRLPARRSHR-RCR 429
PA+SA + R+ PA+ + PR P E P Q+ + +QR R H+ R +
Sbjct: 194 PARSAPQ-----RVPAPPAQQYAPRAP----EYPSAQQQQQQREQQQREQQHREHQARLQ 244
Query: 430 SHDLLQTPEQEQGQ--PPILRLDPQPSANPRRTAHPCRAAG 546
H Q +Q+Q Q PP + PQP R P +G
Sbjct: 245 QHQQQQQQQQQQQQQRPPQPQPQPQPQPPQRPPQQPQSFSG 285
>gi|2347001|dbj|BAA21906| (D31792) serine/threonine protein kinase [Streptomyces griseus]
Length = 555
Score = 33.6 bits (75), Expect = 1.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 238 PHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHR-----PADRQRLP 402
PH + Q+A ++ L P R + P H Q+P + P +Q P
Sbjct: 375 PHPWQSQLQAARDRNEQTQVQYLDPSQDPLRRRPQRQQPPHQQQPPQRRQPSPQHQQYPP 434
Query: 403 ARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHPCR 537
+ +R + Q P+++Q PP + QP+ P R P R
Sbjct: 435 QPQQPQRYQQPQQPQQPQRQQYAPPQPQQPQQPAPRPPREPRPPR 479
>gi|1184100 (U45958) pistil extensin-like protein [Nicotiana alata]
Length = 430
Score = 33.6 bits (75), Expect = 1.1
Identities = 32/116 (27%), Positives = 47/116 (39%), Gaps = 7/116 (6%)
Query: 184 CRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHD 363
C+ P Q+ +P P A P P V P PA+ P PPR+ + P
Sbjct: 166 CKPSPPDQSAKQP-----PPAKQPPPPPPPPP--VKAPSPSPAKQSPPPPRAPSPSPATQ 218
Query: 364 ---QRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSAN----PRRT 522
++P P ++ P ++ +PPI+ P P+AN PRR
Sbjct: 219 PPTKQPPPPPRAKKSPPPPPPPPVAYPPVMAPSPSPAAEPPIVAPFPSPTANPPHVPRRP 278
Query: 523 AHP 531
A P
Sbjct: 279 APP 281
>gi|4506901|oth|NP_003008|PSFRS3 splicing factor, arginine/serine-rich 3
>gi|139781|sp|P23152|SFR3_HUMAN SPLICING FACTOR,
ARGININE/SERINE-RICH 3 (PRE-MRNA SPLICING FACTOR SRP20)
(X16 PROTEIN) >gi|111257|pir||S14016 X16 protein - mouse
>gi|2135952|pir||I54089 pre-mRNA splicing factor - human
>gi|55440|emb|CAA37821| (X53824) X16 [Mus musculus]
>gi|338484 (L10838) pre-mRNA splicing factor [Homo
sapiens] >gi|2125863|emb|CAA62844| (X91656) splicing
factor [Mus musculus]
Length = 164
Score = 33.2 bits (74), Expect = 1.5
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 328 PPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQ 465
PP S P D R P R+R P RRS R RS L + +E+
Sbjct: 92 PPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRER 137
>gi|4495061|emb|CAB39179| (Z85986) SRP20 (SR protein family member) [Homo sapiens]
Length = 154
Score = 33.2 bits (74), Expect = 1.5
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 328 PPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQ 465
PP S P D R P R+R P RRS R RS L + +E+
Sbjct: 92 PPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRER 137
>gi|3413391|emb|CAA20252| (AL031231) hypothetical protein SC3C3.03c [Streptomyces coelicolor]
Length = 1083
Score = 33.2 bits (74), Expect = 1.5
Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 220 PGLLQLPHAVAN-----PAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHR-- 378
PGL PHA + PA + G P P P F PP P P
Sbjct: 87 PGLTPPPHATHHGPSYVPAPAPGAPFTPPPPAPAPGAAFTPPPPPGPGAPFTPPAPPSGG 146
Query: 379 PADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHPCRAAGYRS 555
PA +LP S P + + +P + +P+P A A P AA S
Sbjct: 147 PAGVPKLPVGSGFEPQPSPSQRSAPPEPEPEPEVRTPEPEPKA----VAEPAPAADLAS 201
>gi|3540281 (AF056116) All-1 related protein [Fugu rubripes]
Length = 4823
Score = 32.8 bits (73), Expect = 1.9
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQS---AGKPGLVHRL--HPLPARNFPR 327
P + Q+P Q L PGL+ PH N Q+ G+PG+ L P +
Sbjct: 2545 PRPSHVLQNQQPQQQRLMGPGLVPPPHMAMNQQQTMIRMGQPGIHAGLGHQQQPQSGVKQ 2604
Query: 328 PPRSAAELPDHD 363
PP S PD D
Sbjct: 2605 PPLSNNFFPDKD 2616
>gi|3378120 (AF065164) hyperpolarization-activated channel 1 [Homo sapiens]
Length = 885
Score = 32.8 bits (73), Expect = 1.9
Identities = 35/111 (31%), Positives = 42/111 (37%), Gaps = 1/111 (0%)
Query: 211 LHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADR 390
L P L++ P PA +A PG P A PR PR++ + P P
Sbjct: 748 LGSPRLVRRPPP--GPAPAAASPGPPPPASPPGAPASPRAPRTSP----YGGLPAAPLAG 801
Query: 391 QRLPARRSHRRCRSHDLLQTPEQEQGQP-PILRLDPQPSANPRRTAHPCRAA 543
LPARR R R Q P G P P P S+ PR P A
Sbjct: 802 PALPARRLSRASRPLSASQ-PSLPHGAPGPAASTRPASSSTPRLGPTPAARA 852
>gi|3334151|sp|O14427|CLA4_CANAL SERINE/THREONINE-PROTEIN KINASE CLA4 >gi|2351702 (U87996) CLA4
protein kinase homolog [Candida albicans]
Length = 971
Score = 32.5 bits (72), Expect = 2.5
Identities = 17/64 (26%), Positives = 32/64 (49%), Gaps = 6/64 (9%)
Query: 283 LVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPAD------RQRLPARRSHRRCRSHDLL 444
L+++ +PAR P PP S + + H+ +QR + + ++ + H
Sbjct: 405 LMNKSELIPARRAPPPPTSGTSSDTYSNKNHQDRSGYEQQRQQRTDSSQQQQQQKQHQYQ 464
Query: 445 QTPEQEQGQP 474
Q +Q+Q QP
Sbjct: 465 QKSQQQQQQP 474
>gi|467785|emb|CAA53983| (X76423) penicillin-binding protein 2 [Neisseria perflava]
Length = 399
Score = 32.5 bits (72), Expect = 2.5
Identities = 25/77 (32%), Positives = 31/77 (39%)
Query: 139 TTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARN 318
T A PG R+ AV ++ PG P +A A AGK L RL+ P +
Sbjct: 99 TPAYEPNKPGQADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKI 157
Query: 319 FPRPPRSAAELPDHDQR 369
P P R P D R
Sbjct: 158 GPAPVRDTHVYPSLDVR 174
>gi|1708827|sp|P50459|LIM2_MOUSE HOMEOBOX PROTEIN LIM-2 (LIM/HOMEODOMAIN PROTEIN LHX5)
>gi|2143748|pir||I61573 gene lim-2 protein - rat
>gi|531220 (L35572) amino acid feature: homeodomain, bp
895 .. 1074; amino acid feature: LIM1, bp 373 .. 516;
amino acid feature: LIM2, bp 550 .. 705 [Rattus
norvegicus] >gi|1388183 (U61155) LIM/homeodomain [Mus
musculus]
Length = 402
Score = 32.5 bits (72), Expect = 2.5
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 73 FARSPERQASRKASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVA 252
FA P QA ++PA S + AS PG + EP + H + ++
Sbjct: 296 FAHGPPSQA-----QSPADSSFLAASG---PGSTPLGAL-EPPLAGPHGADNPRFTDMIS 346
Query: 253 NPAQSAGKPGLVHRLHPLPARNF---PRPP 333
+P + +PGL LHP+P F P PP
Sbjct: 347 HPDTPSPEPGLPGALHPMPGEVFSGGPSPP 376
>gi|1085983|pir||S54207 legumin precursor - Magnolia salicifolia
Length = 472
Score = 32.1 bits (71), Expect = 3.3
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 82 SPERQASRKASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVANP- 258
S R A R S +W DDQ C A++N+ RP L LP+ +P
Sbjct: 48 SVTRPARRIESEGGITELWDE-------NDDQFQCAGVAAMRNIIRPSSLSLPNMSPSPR 100
Query: 259 ----AQSAGKPGLVHRLHPLPARNFPRPPRSAAE--------LPDHDQRPH--RPADRQR 396
Q G G+ + R+ +P R+ E + D Q+ H R D
Sbjct: 101 LVYIQQGRGLLGITYPGCAETYRSRGQPQRTGGEQQQQRGESISDQHQKIHRIRRGDIVA 160
Query: 397 LPARRSH 417
LPA +H
Sbjct: 161 LPAGVAH 167
>gi|2147632|pir||S68966 legumin (clone B14) precursor - Magnolia salicifolia
>gi|4379252|emb|CAA57848| (X82465) legumin precursor
[Magnolia salicifolia]
Length = 472
Score = 32.1 bits (71), Expect = 3.3
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 82 SPERQASRKASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVANP- 258
S R A R S +W DDQ C A++N+ RP L LP+ +P
Sbjct: 48 SVTRPARRIESEGGITELWDE-------NDDQFQCAGVAAMRNIIRPSSLSLPNMSPSPR 100
Query: 259 ----AQSAGKPGLVHRLHPLPARNFPRPPRSAAE--------LPDHDQRPH--RPADRQR 396
Q G G+ + R+ +P R+ E + D Q+ H R D
Sbjct: 101 LVYIQQGRGLLGITYPGCAETYRSRGQPQRTGGEQQQQRGESISDQHQKIHRIRRGDIVA 160
Query: 397 LPARRSH 417
LPA +H
Sbjct: 161 LPAGVAH 167
>gi|2653671 (U88587) 120 kDa style glycoprotein [Nicotiana alata]
Length = 461
Score = 32.1 bits (71), Expect = 3.3
Identities = 24/77 (31%), Positives = 33/77 (42%)
Query: 301 PLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPI 480
P PA+ P PP SA +P P+ + PA + R+ Q P ++ PP
Sbjct: 117 PSPAKQPPPPPPSAKP----PVKPPSPSPAAQPPATQ-----RATPPSQPPPMQRAPPPK 167
Query: 481 LRLDPQPSANPRRTAHP 531
L L P P+ P R P
Sbjct: 168 LPLPPPPAQLPIRQPPP 184
>gi|1362529|pir||S55262 UV-endonuclease - Neurospora crassa
Length = 656
Score = 32.1 bits (71), Expect = 3.3
Identities = 17/56 (30%), Positives = 23/56 (40%)
Query: 301 PLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQG 468
P PARN R R+ + R H + L R + H L + EQE+G
Sbjct: 30 PSPARNLRRSGRNILQPSSEKDRDHEKRSGEELAGRMMGKDANGHCLREGKEQEEG 85
>gi|4210461|dbj|BAA74539| (D11392) UV-endonuclease [Neurospora crassa]
Length = 656
Score = 32.1 bits (71), Expect = 3.3
Identities = 17/56 (30%), Positives = 23/56 (40%)
Query: 301 PLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQG 468
P PARN R R+ + R H + L R + H L + EQE+G
Sbjct: 30 PSPARNLRRSGRNILQPSSEKDRDHEKRSGEELAGRMMGKDANGHCLREGKEQEEG 85
>gi|3005587 (AF048977) Ser/Arg-related nuclear matrix protein [Homo sapiens]
Length = 820
Score = 31.7 bits (70), Expect = 4.3
Identities = 37/149 (24%), Positives = 53/149 (34%)
Query: 76 ARSPERQASRKASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVAN 255
+RS + SR SR+P+ T +R D R+ P+ + P P +
Sbjct: 278 SRSRSKSRSRTRSRSPS----HTRPRRRHRSDKMYSPRRRPSPRRRPSPRRRTPPRRMPP 333
Query: 256 PAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSH 435
P + HR P R R RS+A L + R R P ++ +R S
Sbjct: 334 PPR--------HRRSRSPVR---RRRRSSASLSGSSSSSS--SSRSRSPPKKPPKRTSSP 380
Query: 436 DLLQTPEQEQGQPPILRLDPQPSANPRRT 522
PP R P P A P +T
Sbjct: 381 PRKTRRLSPSASPPRRRHRPSPPATPPKT 409
>gi|322759|pir||PQ0479 pistil extensin-like protein (clone pMG14) - common tobacco
(fragment) >gi|19927|emb|CAA78393| (Z14015) pistil
extensin like protein [Nicotiana tabacum]
Length = 393
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Query: 301 PLPARNFPRPPRSAAELPDHD---QRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQ 471
P PA+ P PPR+ + P ++P P+ ++ P ++ ++ +
Sbjct: 169 PSPAKQSPPPPRAPSPSPATQPPIKQPPPPSAKKSPPPPVAY-----PPVMAPSPSPAAE 223
Query: 472 PPILRLDPQPSAN----PRRTAHP 531
PPI+ P P+AN PRR A P
Sbjct: 224 PPIIAPFPSPTANLPLIPRRPAPP 247
>gi|2494501|sp|Q64733|FKH4_MOUSE TRANSCRIPTION FACTOR FKH-4 >gi|1280485|emb|CAA63335| (X92591)
transcription factor [Mus musculus]
Length = 428
Score = 31.3 bits (69), Expect = 5.7
Identities = 28/102 (27%), Positives = 36/102 (34%), Gaps = 5/102 (4%)
Query: 226 LLQLPHAVANPAQSAGKPGL-----VHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADR 390
+L+ HA + S G PG +H HP A + AA H P P
Sbjct: 111 VLRADHAHLHSGSSKGAPGTGPGGHLHPHHPHHAHHHHHHHHHAAHHHHHHHPPQPP--- 167
Query: 391 QRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHP 531
P H H Q P PQP + P +T+HP
Sbjct: 168 ---PPPPPHMVPYFHQQPAPAPQPPHLPSQPAQQPQPQSQPPQTSHP 211
>gi|3386334 (AF035120) type I procollagen pro-alpha 2 chain [Canis familiaris]
Length = 1366
Score = 31.3 bits (69), Expect = 5.7
Identities = 19/51 (37%), Positives = 23/51 (44%)
Query: 238 PHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADR 390
P PA G+PG + P AR P PP A E H +P RP +R
Sbjct: 110 PQGFQGPAGEPGEPG---QTGPAGARGPPGPPGKAGE-DGHPGKPGRPGER 156
>gi|322756|pir||PQ0478 pistil extensin-like protein (clone pMG07) - common tobacco
(fragment) >gi|19921|emb|CAA78396| (Z14018) pistil
extensin like protein, partial CDS [Nicotiana tabacum]
Length = 264
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Query: 301 PLPARNFPRPPRSAAELPDHD---QRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQ 471
P PA+ P PPR+ + P ++P P+ ++ P ++ ++ +
Sbjct: 40 PSPAKQSPPPPRAPSPSPATQPPIKQPPPPSAKKSPPPPVAY-----PPVMAPSPSPAAE 94
Query: 472 PPILRLDPQPSAN----PRRTAHP 531
PPI+ P P+AN PRR A P
Sbjct: 95 PPIIAPFPSPTANLPLIPRRPAPP 118
>gi|2330549|dbj|BAA21791| (D87993) PACE4E-I [Homo sapiens]
Length = 975
Score = 31.3 bits (69), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 8 IARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQG 118
+ R GP G+ QA ++S G ++LSA PG +G
Sbjct: 897 VCRRYGPPGGERQATVSSKGVPGGQSLSASSPGAGEG 933
>gi|4455041|gb|AAD21045| (AF116463) unknown [Streptomyces lincolnensis]
Length = 822
Score = 31.3 bits (69), Expect = 5.7
Identities = 37/128 (28%), Positives = 43/128 (32%)
Query: 187 RQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQ 366
R PA + RP + H + PA SA +PG R PRP R +
Sbjct: 637 RPHPAERE-RRPYGEAVGHQRSPPAPSAERPGEARRHRRRRGLRLPRPHRGDRRCGRRGE 695
Query: 367 RPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHPCRAAG 546
R R R A H Q P QG PP P P + R P A G
Sbjct: 696 RLGRDRPRPPRSAGPPH---------QPPRHGQGGPPPRGTRPVPHRD-RPPQRPDLAHG 745
Query: 547 YRSRCGRR 570
R RR
Sbjct: 746 TRPGTHRR 753
>gi|809737|emb|CAA42184| (X59625) penicillin-binding protein 2 [Neisseria meningitidis]
Length = 399
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 107 PGRADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPSPVRDT 165
Query: 343 AELPDHDQR 369
P D R
Sbjct: 166 HVYPSLDVR 174
>gi|2827601|emb|CAA16656| (AL021646) hypothetical protein Rv3191c [Mycobacterium
tuberculosis]
Length = 344
Score = 31.3 bits (69), Expect = 5.7
Identities = 26/79 (32%), Positives = 36/79 (44%), Gaps = 2/79 (2%)
Query: 154 KRCPGDDQIHCRQEPAVQNLHRP-GLLQLPHAVANPAQSAGKPGLVHR-LHPLPARNFPR 327
++ P D + E Q +++P L P V +P + + G HR H P R R
Sbjct: 105 RKYPDDRSMWLCHESIYQAVYQPQSRLIRPPQVKSPHRGPLRTGRTHRRAHLRPGR---R 161
Query: 328 PPRSAAELPDHDQRPHRPADR 390
PR A + QRP PADR
Sbjct: 162 RPRFAQPMLSIHQRPFDPADR 182
>gi|3876366|emb|CAA93286| (Z69360) cDNA EST yk253f12.3 comes from this gene; cDNA EST
yk253f12.5 comes from this gene [Caenorhabditis elegans]
Length = 387
Score = 31.3 bits (69), Expect = 5.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 274 KPGLVHRLHPLPARNFPRPPRSAAELPD---HDQRPHRPA-DRQRLPARRSHRRCRSHDL 441
+P R P + P P R+ LP ++ +P P +Q+ P + R ++
Sbjct: 118 QPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQPQPPQPQQQQYPQPQPQRGGCTYSQ 177
Query: 442 LQTPEQEQGQPPILRLDPQPSANPRRT 522
Q Q+Q QPP + P+P PR+T
Sbjct: 178 PQPQPQQQPQPPCYQRQPEP---PRQT 201
>gi|1109849 (U41538) proline rich [Caenorhabditis elegans]
Length = 997
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/73 (31%), Positives = 24/73 (32%)
Query: 322 PRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQP 501
P PPR P P RP P RR R P E PP P P
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPR--------TPPSPEPRNPPRTPPSPIP 192
Query: 502 SANPRRTAHPCRA 540
PR +H RA
Sbjct: 193 PPPPRLNSHDRRA 205
>gi|129665|sp|P08149|PBP2_NEIGO PENICILLIN-BINDING PROTEIN 2 (PBP-2) >gi|78124|pir||S00916
penicillin-binding protein 2 - Neisseria gonorrhoeae
>gi|150279 (M32091) penicillin binding protein 2
[Neisseria gonorrhoeae]
Length = 581
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 289 PGRADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPSPVRDT 347
Query: 343 AELPDHDQR 369
P D R
Sbjct: 348 HVYPSLDVR 356
>gi|1073198|pir||S49093 penicillin-binding protein 2 - Neisseria meningitidis
>gi|509065|emb|CAA42192| (X59633) penicillin-binding
protein 2 [Neisseria meningitidis]
Length = 581
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 289 PGRADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPSPVRDT 347
Query: 343 AELPDHDQR 369
P D R
Sbjct: 348 HVYPSLDVR 356
>gi|1073202|pir||S49098 penicillin-binding protein 2 - Neisseria meningitidis
>gi|509190|emb|CAA42188| (X59629) penicillin-binding
protein 2 [Neisseria meningitidis]
Length = 581
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 289 PGRADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPSPVRDT 347
Query: 343 AELPDHDQR 369
P D R
Sbjct: 348 HVYPSLDVR 356
>gi|129666|sp|P11882|PBP2_NEIME PENICILLIN-BINDING PROTEIN 2 (PBP-2) >gi|78181|pir||S04857
penicillin-binding protein 2 - Neisseria meningitidis
>gi|45178|emb|CAA33347| (X15276) penicillin-binding
protein 2 (AA 1 - 581) [Neisseria meningitidis]
Length = 581
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 289 PGRADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPSPVRDT 347
Query: 343 AELPDHDQR 369
P D R
Sbjct: 348 HVYPSLDVR 356
>gi|4092646|emb|CAA08889| (AJ009849) neuroendocrine secretory protein 55 (NESP55) [Homo
sapiens]
Length = 245
Score = 31.3 bits (69), Expect = 5.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 256 PAQSAGKPGLVHRLHPL-------------PARNFPRPPRSAAELPDHDQRPHRPADRQR 396
P S L RLH L P+ P+ PR EL D+ P P + +
Sbjct: 150 PKHSTFGQSLTQRLHALKLRSPDASPSRAPPSTQEPQSPREGEELKPEDKDPRDPEESKE 209
Query: 397 LPARRSHRRCR 429
+ RRC+
Sbjct: 210 PKEEKQRRRCK 220
>gi|533532 (U11295) carbamoyl phosphate synthetase (glutamine) large subunit
[Neisseria gonorrhoeae]
Length = 1079
Score = 31.3 bits (69), Expect = 5.7
Identities = 15/44 (34%), Positives = 22/44 (49%)
Query: 304 LPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSH 435
LP R+ P R+ A+ H Q P RP +R +R +R R +
Sbjct: 969 LPTRHGAIPDRTRADCAGHQQSPRRPPAHRRRAEKRRNRTGRKY 1012
>gi|1073197|pir||S49092 penicillin-binding protein 2 - Neisseria meningitidis
>gi|509120|emb|CAA42189| (X59630) penicillin-binding
protein 2 [Neisseria meningitidis]
Length = 582
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 289 PGRADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPSPVRDT 347
Query: 343 AELPDHDQR 369
P D R
Sbjct: 348 HVYPSLDVR 356
>gi|1073199|pir||S49095 penicillin-binding protein 2 - Neisseria meningitidis
>gi|509157|emb|CAA42190| (X59631) penicillin-binding
protein 2 [Neisseria meningitidis]
Length = 582
Score = 31.3 bits (69), Expect = 5.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 289 PGRADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPAPVRDT 347
Query: 343 AELPDHDQR 369
P D R
Sbjct: 348 HVYPSLDVR 356
>gi|730013|sp|P39970|YEN5_YEAST HYPOTHETICAL 54.6 KD PROTEIN IN MEI4-SAP1 INTERGENIC REGION
>gi|1077653|pir||S50548 hypothetical protein YER045c -
yeast (Saccharomyces cerevisiae) >gi|603278 (U18796)
YER045C [Saccharomyces cerevisiae]
Length = 489
Score = 31.3 bits (69), Expect = 5.7
Identities = 24/79 (30%), Positives = 32/79 (40%)
Query: 304 LPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPIL 483
LP N PP + LP DQ P ++R+ DL QPPIL
Sbjct: 80 LPITN---PPIFQSSLPAFDQ----PVYKRRISISNGQISQLGEDLETVENLYNCQPPIL 132
Query: 484 RLDPQPSANPRRTAHPCRA 540
Q + NP++ A+P A
Sbjct: 133 SSKAQQNPNPQQVANPSAA 151
>gi|2330551|dbj|BAA21792| (D87994) PACE4E-II [Homo sapiens]
Length = 962
Score = 31.3 bits (69), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 8 IARHIGPRAGDEQAMLNSLGFDSLEALSARHPGKHQG 118
+ R GP G+ QA ++S G ++LSA PG +G
Sbjct: 884 VCRRYGPPGGERQATVSSKGVPGGQSLSASSPGAGEG 920
>gi|3876365|emb|CAA93285| (Z69360) cDNA EST EMBL:D66541 comes from this gene; cDNA EST
EMBL:D70355 comes from this gene; cDNA EST EMBL:C10435
comes from this gene; cDNA EST EMBL:C12135 comes from
this gene; cDNA EST yk191a6.3 comes from this gene; cDNA
...
Length = 798
Score = 31.3 bits (69), Expect = 5.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 274 KPGLVHRLHPLPARNFPRPPRSAAELPD---HDQRPHRPA-DRQRLPARRSHRRCRSHDL 441
+P R P + P P R+ LP ++ +P P +Q+ P + R ++
Sbjct: 118 QPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQPQPPQPQQQQYPQPQPQRGGCTYSQ 177
Query: 442 LQTPEQEQGQPPILRLDPQPSANPRRT 522
Q Q+Q QPP + P+P PR+T
Sbjct: 178 PQPQPQQQPQPPCYQRQPEP---PRQT 201
>gi|3043646|dbj|BAA25487| (AB011133) KIAA0561 protein [Homo sapiens]
Length = 1308
Score = 30.9 bits (68), Expect = 7.4
Identities = 36/119 (30%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 115 RAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQ-LPHAVANPAQSAGKPGLVH 291
R+PA V +A PA RP L L + P G+
Sbjct: 1122 RSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLHGLAAKLGPPRPKTGRRKSTS 1181
Query: 292 RLHPLPARNFP---RPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQE 462
+ P P P PPRS + LP H P PA RL RR +S D L T E+
Sbjct: 1182 SIPPSPLACPPISAPPPRSPSPLPGH---PPAPARSPRL------RRGQSADKLGTGERL 1232
Query: 463 QGQ 471
G+
Sbjct: 1233 DGE 1235
>gi|3980411 (AC004561) putative proline-rich protein [Arabidopsis thaliana]
Length = 891
Score = 30.9 bits (68), Expect = 7.4
Identities = 40/148 (27%), Positives = 53/148 (35%), Gaps = 6/148 (4%)
Query: 88 ERQASRKASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRP---GLLQLPHAVANP 258
+R+ S R+ + SV + S +R R ++ RP G Q P P
Sbjct: 264 KRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPA----P 319
Query: 259 AQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHR---PADRQRLPARRSHRRCR 429
++ P P R P PP P R HR P RQR RR R
Sbjct: 320 SRRRRSPS-----PPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHR 374
Query: 430 SHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHP 531
S + + P R P P A RR+ P
Sbjct: 375 SPPPARR-RRSPSPPARRRRSPSPPARRRRSPSP 407
Score = 30.9 bits (68), Expect = 7.4
Identities = 43/163 (26%), Positives = 59/163 (35%), Gaps = 5/163 (3%)
Query: 79 RSPERQASRKASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQL----PHA 246
RSP R SR+P + S R P + ++P L P + Q P A
Sbjct: 413 RSPSPLYRRNRSRSPLAKRGRSDSPGRSPSP--VARLRDPTGARLPSPSIEQRLPSPPVA 470
Query: 247 VANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRC 426
P+ + GL P PA+ P PP A LP P R
Sbjct: 471 QRLPSPPPRRAGLPS---PPPAQRLPSPPPRRAGLPS--------------PMRIGGSHA 513
Query: 427 RSHDLLQTPEQEQGQPP-ILRLDPQPSANPRRTAHPCRAAGYRSRCGR 567
+H L++P PP ++ P P RR+ P S+ GR
Sbjct: 514 ANH--LESPSPSSLSPPGRKKVLPSPPVRRRRSLTPDEERVSLSQGGR 559
>gi|1705706|sp|P54282|CCP1_RAT P-TYPE CALCIUM CHANNEL ALPHA-1 SUBUNIT (RBA-I) >gi|111447|pir||A41098
calcium channel protein alpha-1 chain isoform A - rat
>gi|203111 (M64373) calcium channel alpha-1 subunit
[Rattus norvegicus]
Length = 2212
Score = 30.9 bits (68), Expect = 7.4
Identities = 35/111 (31%), Positives = 50/111 (44%), Gaps = 8/111 (7%)
Query: 76 ARSPE--RQASR--KASRAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPH 243
+R+PE RQ +R +++R P +S +R PG + + R+ Q H P +P
Sbjct: 839 SRAPEALRQTARPRESARDPDARRAWPSSPERAPGREGPYGRESEPQQREHAPPREHVPW 898
Query: 244 AVANPAQSAGKPGLVHRLHPL----PARNFPRPPRSAAELPDHDQRPHRPADRQRLPAR 408
AG H P+ P R+ R R E D +R RP D R PAR
Sbjct: 899 DADPERAKAGDAPRRHTHRPVAEGEPRRHRAR-RRPGDEPDDRPERRPRPRDATR-PAR 955
>gi|2588991|dbj|BAA23269| (AB001895) B120 [Homo sapiens]
Length = 1142
Score = 30.9 bits (68), Expect = 7.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 325 RPPRSAAELPDHDQRPHRPADRQR-LPARRSHRRCRSHDLLQTP-EQEQGQPPILRLDPQ 498
+PP+ + P + Q+P +P +Q P + H Q P Q Q Q P + PQ
Sbjct: 124 QPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQ 183
Query: 499 ---PSANPRRTAHP 531
PS ++ A+P
Sbjct: 184 QPAPSTLSQQAAYP 197
>gi|1710633|sp|P52205|ROM1_BOVIN ROD OUTER SEGMENT MEMBRANE PROTEIN 1 (ROSP1)
>gi|1272503|dbj|BAA11900| (D83385) rom1 [Bos taurus]
Length = 351
Score = 30.9 bits (68), Expect = 7.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 233 NCHTPSPILRNLLENPAWYTAYTPYQPEI---SQGRLEALLNFQTMISDLTGLPIANASL 403
N H+P P L++ L +P + + P QP + SQG E LL ++ G +A L
Sbjct: 218 NPHSPRPCLQSQLSDPHAHPLFDPRQPNLNLWSQGCHEVLLGHLQGLASTLGNMLAVTFL 277
Query: 404 L 406
L
Sbjct: 278 L 278
>gi|3153821 (AF062655) plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 30.9 bits (68), Expect = 7.4
Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 2/64 (3%)
Query: 334 RSAAELPDHDQ--RPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSA 507
R+ + P H + R HR R P RR R R +TP + PP R P
Sbjct: 285 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGR 344
Query: 508 NPRRTA 525
RR++
Sbjct: 345 RRRRSS 350
>gi|4558640|gb|AAD22670|AC007192_1 (AC007192) KIAA0561 protein [AA 628-1308] [Homo sapiens]
Length = 681
Score = 30.9 bits (68), Expect = 7.4
Identities = 36/119 (30%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 115 RAPACSVWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQ-LPHAVANPAQSAGKPGLVH 291
R+PA V +A PA RP L L + P G+
Sbjct: 495 RSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLHGLAAKLGPPRPKTGRRKSTS 554
Query: 292 RLHPLPARNFP---RPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQE 462
+ P P P PPRS + LP H P PA RL RR +S D L T E+
Sbjct: 555 SIPPSPLACPPISAPPPRSPSPLPGH---PPAPARSPRL------RRGQSADKLGTGERL 605
Query: 463 QGQ 471
G+
Sbjct: 606 DGE 608
>gi|1621442 (U72027) photoreceptor disk rim specific protein rom-1 [Bos taurus]
Length = 350
Score = 30.9 bits (68), Expect = 7.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 233 NCHTPSPILRNLLENPAWYTAYTPYQPEI---SQGRLEALLNFQTMISDLTGLPIANASL 403
N H+P P L++ L +P + + P QP + SQG E LL ++ G +A L
Sbjct: 217 NPHSPRPCLQSQLSDPHAHPLFDPRQPNLNLWSQGCHEVLLGHLQGLASTLGNMLAVTFL 276
Query: 404 L 406
L
Sbjct: 277 L 277
>gi|139693|sp|P07527|WEE1_SCHPO MITOSIS INHIBITOR PROTEIN KINASE WEE1 (P107 PROTEIN KINASE HOMOLOG)
>gi|82815|pir||A25962 mitosis inhibitor wee1+ (protein
kinase homolog) - fission yeast (Schizosaccharomyces
pombe) >gi|173532 (M16508) wee1+ protein
[Schizosaccharomyces pombe]
Length = 877
Score = 30.5 bits (67), Expect = 9.7
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 256 PAQSAGKPGLVHRLH-PLPARNFPRPPRSAAELPDHDQRPHRPA-DRQRLPARRSHRRCR 429
P+Q GL+ + H P NF P S P RPH + D P+ S+ +
Sbjct: 376 PSQVFMSTGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNTQTD 435
Query: 430 S-----------HDLLQTPEQEQGQPPILRLDPQPSA 507
S H+ + T + E+ LR DP PSA
Sbjct: 436 SYFIQRENTPTNHNSIPTIQLEKSSMDFLRFDPPPSA 472
>gi|479334|pir||S33412 serine-rich protein hairless - fruit fly (Drosophila melanogaster)
Length = 1076
Score = 30.5 bits (67), Expect = 9.7
Identities = 24/94 (25%), Positives = 36/94 (37%)
Query: 250 ANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCR 429
++PA A P V + R F P S++ P P DR P R H + +
Sbjct: 787 SSPASPATTPRTVPKKTASIRREFASPSASSSSCPS-------PGDRSASPPERRHMQQQ 839
Query: 430 SHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHP 531
H +P PP +++ SA +A P
Sbjct: 840 PHLQRSSPLHYYMYPPPPQVNGNGSAGSPTSAPP 873
>gi|995557|emb|CAA61623| (X89453) DRPLA [Rattus norvegicus]
Length = 1182
Score = 30.5 bits (67), Expect = 9.7
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 23 GPRAGDEQAMLNSLGFDSLEALSARHPGKHQGHQRARYGRRP------QRSDALAMIKSI 184
GP + NS G S A S HP QG Q A Y P + +I ++
Sbjct: 555 GPNGPPVSSSSNSSGSSSQAAYSCSHPSSSQGPQGASYPLPPVPPITTSSATLSTVIATV 614
Query: 185 AGKNQLFKTYI--GQGYYNCHTPSP 253
A +KT G Y+ PSP
Sbjct: 615 ASSPAGYKTASPPGPPQYSKRAPSP 639
>gi|345512|pir||A44067 109K basic protein H - fruit fly (Drosophila sp.) >gi|157622 (M95192)
hairless protein [Drosophila melanogaster]
Length = 1059
Score = 30.5 bits (67), Expect = 9.7
Identities = 24/94 (25%), Positives = 36/94 (37%)
Query: 250 ANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCR 429
++PA A P V + R F P S++ P P DR P R H + +
Sbjct: 769 SSPASPATTPRTVPKKTASIRREFASPSASSSSCPS-------PGDRSASPPERRHMQQQ 821
Query: 430 SHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHP 531
H +P PP +++ SA +A P
Sbjct: 822 PHLQRSSPLHYYMYPPPPQVNGNGSAGSPTSAPP 855
>gi|462278|sp|Q02308|HLES_DROME HAIRLESS PROTEIN >gi|578332|emb|CAA47664| (X67239) hairless
[Drosophila melanogaster]
Length = 1077
Score = 30.5 bits (67), Expect = 9.7
Identities = 24/94 (25%), Positives = 36/94 (37%)
Query: 250 ANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCR 429
++PA A P V + R F P S++ P P DR P R H + +
Sbjct: 787 SSPASPATTPRTVPKKTASIRREFASPSASSSSCPS-------PGDRSASPPERRHMQQQ 839
Query: 430 SHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHP 531
H +P PP +++ SA +A P
Sbjct: 840 PHLQRSSPLHYYMYPPPPQVNGNGSAGSPTSAPP 873
>gi|417693|sp|P32958|ROM1_MOUSE ROD OUTER SEGMENT MEMBRANE PROTEIN 1 (ROSP1)
>gi|2137744|pir||I68620 rod outer segment membrane
protein 1 - mouse >gi|293779 (M96760) rod outer segment
membrane protein 1 [Mus musculus]
Length = 351
Score = 30.5 bits (67), Expect = 9.7
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 233 NCHTPSPILRNLLENPAWYTAYTPYQPEI---SQGRLEALLNFQTMISDLTGLPIANASL 403
N H+P P L++ L +P + + P QP + +QG E LL +S G +A L
Sbjct: 218 NPHSPRPCLQSQLSDPYAHPLFDPRQPNLNLWAQGCHEVLLEHLQGLSGTLGSILAVTLL 277
Query: 404 L 406
L
Sbjct: 278 L 278
>gi|140778|sp|P03181|YHL1_EBV HYPOTHETICAL BHLF1 PROTEIN >gi|73912|pir||QQBE3 BHLF1 protein -
human herpesvirus 4 (strain B95-8)
Length = 660
Score = 30.5 bits (67), Expect = 9.7
Identities = 35/106 (33%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 106 KASRAPACS-VWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPG 282
+++R P C W S + G Q P+ RP P A P G
Sbjct: 398 RSARNPGCPRTWRRRSGAQ-RGHPPPGAGQRPSGPTGGRPAAPGAPGTPAAPGPGGGA-A 455
Query: 283 LVHRLHPLPARNF-PRPPRSAAELPDHDQRPHRPAD---RQRLP-----------ARRSH 417
+ P P R P P +AA LP Q P P D QR P A+R+H
Sbjct: 456 VPSGATPHPERGSGPADPPAAARLPPERQEPRLPQDLAAAQRCPAGPPPTRSGAAAQRTH 515
Query: 418 RR 423
RR
Sbjct: 516 RR 517
Score = 30.5 bits (67), Expect = 9.7
Identities = 35/106 (33%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 106 KASRAPACS-VWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPG 282
+++R P C W S + G Q P+ RP P A P G
Sbjct: 523 RSARNPGCPRTWRRRSGAQ-RGHPPPGAGQRPSGPTGGRPAAPGAPGTPAAPGPGGGA-A 580
Query: 283 LVHRLHPLPARNF-PRPPRSAAELPDHDQRPHRPAD---RQRLP-----------ARRSH 417
+ P P R P P +AA LP Q P P D QR P A+R+H
Sbjct: 581 VPSGATPHPERGSGPADPPAAARLPPERQEPRLPQDLAAAQRCPAGPPPTRSGAAAQRTH 640
Query: 418 RR 423
RR
Sbjct: 641 RR 642
Score = 30.5 bits (67), Expect = 9.7
Identities = 35/106 (33%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 106 KASRAPACS-VWTTASAKRCPGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPG 282
+++R P C W S + G Q P+ RP P A P G
Sbjct: 273 RSARNPGCPRTWRRRSGAQ-RGHPPPGAGQRPSGPTGGRPAAPGAPGTPAAPGPGGGA-A 330
Query: 283 LVHRLHPLPARNF-PRPPRSAAELPDHDQRPHRPAD---RQRLP-----------ARRSH 417
+ P P R P P +AA LP Q P P D QR P A+R+H
Sbjct: 331 VPSGATPHPERGSGPADPPAAARLPPERQEPRLPQDLAAAQRCPAGPPPTRSGAAAQRTH 390
Query: 418 RR 423
RR
Sbjct: 391 RR 392
>gi|4165055 (AF064260) SRC8 [Strongylocentrotus purpuratus]
Length = 587
Score = 30.5 bits (67), Expect = 9.7
Identities = 21/72 (29%), Positives = 29/72 (40%)
Query: 325 RPPRSAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPS 504
R R A E + + + +RQR A + Q PE+E P P+P+
Sbjct: 336 RGRRQAREQKEKEADKKKEEERQRALAEHHRALPDEPEPEQEPEREPAPEPQRARLPEPA 395
Query: 505 ANPRRTAHPCRA 540
A PRR P A
Sbjct: 396 AAPRREPPPAAA 407
>gi|1362170|pir||S57448 DNA binding protein - rice (fragment) >gi|871498|emb|CAA61277|
(X88799) DNA binding protein [Oryza sativa]
Length = 112
Score = 30.5 bits (67), Expect = 9.7
Identities = 29/92 (31%), Positives = 38/92 (40%), Gaps = 5/92 (5%)
Query: 256 PAQSAGKPGLVH----RLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPARRSHRR 423
P + G+P V R +P P R PRP R A +RP R A R R P R
Sbjct: 10 PKRGRGRPPKVRPRATRPYP-PRRTRPRPRRCAGRRLRRCRRPRRAAPRGRPPKPRDP-- 66
Query: 424 CRSHDLLQTPEQEQGQPPILR-LDPQPSANPRRTAHP 531
+ + P + P+ + P P P TA P
Sbjct: 67 -HAPPKIPRPRGRPRKNPLPEGMVPPPPTRPGATAKP 102
>gi|2935557 (AF049893) insulin upstream factor 1 [Homo sapiens]
Length = 283
Score = 30.5 bits (67), Expect = 9.7
Identities = 18/39 (46%), Positives = 25/39 (63%), Gaps = 6/39 (15%)
Query: 193 EPAVQNLHR--PGLLQLPHAVANPAQSAGKPGLV---HRLH-PLP 309
+PAV +LH P L LPH A P +PG++ +R+H P P
Sbjct: 76 DPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVHLPFP 120
>gi|423830|pir||A45690 transactivator EBNA-2 - Herpesvirus papio HVP >gi|306316 (L11366)
EBNA2 gene product [Herpesvirus papio]
Length = 530
Score = 30.5 bits (67), Expect = 9.7
Identities = 27/102 (26%), Positives = 35/102 (33%)
Query: 226 LLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSAAELPDHDQRPHRPADRQRLPA 405
L++ P NP S P P+P ++ P PPR P H P + +Q P
Sbjct: 167 LIRPPRPTYNPLSSPNTPSP----SPIPFQHTPLPPRPPTASPPH-SHPFQSEPKQTPP- 220
Query: 406 RRSHRRCRSHDLLQTPEQEQGQPPILRLDPQPSANPRRTAHP 531
P PP+ P PS P T HP
Sbjct: 221 --------------KPTLPLPGPPVSPPPPTPSIQP--TPHP 246
>gi|4151809 (AF102855) synaptic SAPAP-interacting protein Synamon [Rattus
norvegicus]
Length = 2091
Score = 30.5 bits (67), Expect = 9.7
Identities = 25/70 (35%), Positives = 26/70 (36%), Gaps = 5/70 (7%)
Query: 337 SAAELPDHDQRPHRPADRQRLPARRSHRRCRSHDLLQTPEQEQG-----QPPILRLDPQP 501
SAA P H PH P H H PE E G PP L L PQP
Sbjct: 989 SAALPPAHHHPPHHHHHHAPPPQPHHHHAHPPHP----PEMETGGSPDDPPPRLALGPQP 1044
Query: 502 SANPRRTAHPCRAAG 546
S R P +G
Sbjct: 1045 SLRGWRGGGPSPTSG 1059
>gi|467781|emb|CAA53903| (X76285) penicillin-binding protein 2 [Neisseria sicca]
Length = 581
Score = 30.5 bits (67), Expect = 9.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Query: 163 PGDDQIHCRQEPAVQNLHRPGLLQLPHAVANPAQSAGKPGLVHRLHPLPARNFPRPPRSA 342
PG R+ AV ++ PG P +A A AGK L RL+ P + P P R
Sbjct: 289 PGWADSEQRRNRAVTDMIEPGSAIKPFVIAK-ALDAGKTDLNERLNTQPYKIGPSPVRDT 347
Query: 343 AELPDHDQR 369
P D R
Sbjct: 348 HVYPSLDVR 356
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125131709
Number of Sequences: 369800
Number of extensions: 2788767
Number of successful extensions: 12909
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 12758
Number of HSP's gapped (non-prelim): 146
length of query: 197
length of database: 113023754
effective HSP length: 53
effective length of query: 143
effective length of database: 93424354
effective search space: 13359682622
effective search space used: 13359682622
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)