BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14-27F
(616 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|586315|sp|P38299|YB34_YEAST HYPOTHETICAL 60.6 KD PROTEIN IN S... 35 0.40
gi|4154996 (AE001480) putative Outer membrane protein [Helicobac... 32 2.6
gi|2313617|gb|AAD07571| (AE000565) conserved hypothetical secret... 32 2.6
gi|2493012|sp|Q12697|ATC9_YEAST PROBABLE CALCIUM-TRANSPORTING AT... 32 2.6
gi|2388982|emb|CAB11714| (Z98980) hypothetical protein [Schizosa... 32 4.5
gi|4049867 (AF063866) ORF MSV049 hypothetical protein [Melanoplu... 32 4.5
>gi|586315|sp|P38299|YB34_YEAST HYPOTHETICAL 60.6 KD PROTEIN IN SMP1-MBA1 INTERGENIC REGION
>gi|626538|pir||S46056 hypothetical protein YBR184w -
yeast (Saccharomyces cerevisiae)
>gi|536542|emb|CAA85145| (Z36053) ORF YBR184w
[Saccharomyces cerevisiae] >gi|575911 (U02073) unknown
[Saccharomyces cerevisiae]
Length = 523
Score = 35.2 bits (79), Expect = 0.40
Identities = 32/120 (26%), Positives = 57/120 (46%), Gaps = 6/120 (5%)
Query: 412 RLPYPFGVDRILKSRVSTFQLSDMDVIKTDGEILKELSNGIIIKPIKNTL---SCCVS-- 248
RLPY + R+ S Q+ D+I T + ++G+ L S C++
Sbjct: 246 RLPYCKQILRLF----SLLQMKRNDLIVTS----ENCNSGVFFSNFNYQLQVKSNCIANI 297
Query: 247 TNTYSFKPSNDIEIHKKIISHPNWCINHIECNNTYTFDIFTMLGIKISILPNEFMNY-FI 71
++T SF P ++I ++ I +PN N EC Y + + ++L + + + I
Sbjct: 298 SSTLSFLPHHEITVYTSFILYPNVVDNIWECTR-YAIQLLKSEAAQFTLLRDIYSGFTII 356
Query: 70 LNNHSY 53
L+NH Y
Sbjct: 357 LSNHRY 362
>gi|4154996 (AE001480) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 406
Score = 32.5 bits (72), Expect = 2.6
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 616 KNILMVGDNLVYDSLNFLSLTRRTFHPERCYYVPGMKNSDIFSFIVSMTTVKKLITCYKN 437
K L+VG+ LV+D L L + P++ YY ++ ++ + I S T L
Sbjct: 38 KQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNT 97
Query: 436 LV 431
L+
Sbjct: 98 LI 99
>gi|2313617|gb|AAD07571| (AE000565) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 403
Score = 32.5 bits (72), Expect = 2.6
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 616 KNILMVGDNLVYDSLNFLSLTRRTFHPERCYYVPGMKNSDIFSFIVSMTTVKKLITCYKN 437
K L+VG+ LV+D L L + P++ YY ++ ++ + I S T L
Sbjct: 35 KQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDANNT 94
Query: 436 LV 431
L+
Sbjct: 95 LI 96
>gi|2493012|sp|Q12697|ATC9_YEAST PROBABLE CALCIUM-TRANSPORTING ATPASE 9 >gi|2132937|pir||S67195
probable membrane protein YOR291w - yeast (Saccharomyces
cerevisiae) >gi|1420646|emb|CAA99518| (Z75199) ORF
YOR291w [Saccharomyces cerevisiae]
Length = 1472
Score = 32.5 bits (72), Expect = 2.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 160 ECNNTYTF--DIFTMLGIKISILPNEFMNYFILNNHSYLEIEIDDKTEIV 17
ECN T D+F +L + +P E++N +LN+ Y + D+K E++
Sbjct: 1123 ECNYTLAVSGDVFRLLFRDENEIPEEYLNEILLNSSIYARMSPDEKHELM 1172
>gi|2388982|emb|CAB11714| (Z98980) hypothetical protein [Schizosaccharomyces pombe]
Length = 410
Score = 31.7 bits (70), Expect = 4.5
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 610 ILMVGDNLVYDSLNF---LSLTRRTFHPERCYYVPGMKNSDIFSFIVS---MTTVKKLIT 449
I+ D L D LNF + L +H R ++ P + D S + M+ + I
Sbjct: 182 IIAKADTLTDDELNFTKEMILRDIQYHNIRIFFPPTYETDDPESVAENADIMSRIPFAII 241
Query: 448 CYKNLVVENILKRLP---YPFGVDRILKSRVSTFQLSDMDVIKTDGEILKELSN 296
VV N KR+ YP+GV + S F +I+T E LKE +N
Sbjct: 242 ASNTFVVNNEGKRVRGRRYPWGVVEVDNEEHSDFPKLREMLIRTHLEELKEQTN 295
>gi|4049867 (AF063866) ORF MSV049 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 116
Score = 31.7 bits (70), Expect = 4.5
Identities = 24/96 (25%), Positives = 44/96 (45%)
Query: 496 IFSFIVSMTTVKKLITCYKNLVVENILKRLPYPFGVDRILKSRVSTFQLSDMDVIKTDGE 317
+ I+ + V LI Y L + ++ + Y + + + + +L + + ++
Sbjct: 6 VVQVIIIVAFVISLIIIYFPLSIYELVSK-SYTYDPSNDINQKYNDNKLKIITLFMSNNT 64
Query: 316 ILKELSNGIIIKPIKNTLSCCVSTNTYSFKPSNDIE 209
I K N I IKNT++ S NTY+F NDI+
Sbjct: 65 IYKAQGN-ITFDVIKNTITFKFSGNTYTFDIINDID 99
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100726721
Number of Sequences: 368476
Number of extensions: 2049959
Number of successful extensions: 5257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5255
Number of HSP's gapped (non-prelim): 8
length of query: 205
length of database: 112640273
effective HSP length: 53
effective length of query: 151
effective length of database: 93111045
effective search space: 14059767795
effective search space used: 14059767795
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)