BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14-26R
(555 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1946369 (U93215) unknown protein [Arabidopsis thaliana] 34 0.78
gi|2315791 (AF016684) No definition line found [Caenorhabditis e... 33 1.8
gi|3411143 (AF054980) protein kinase YopO [Yersinia enterocoliti... 32 2.3
gi|549805|sp|Q05608|YPKA_YERPS PROTEIN KINASE YPKA PRECURSOR >gi... 32 2.3
gi|2996279 (AF053946) protein kinase A homolog [Yersinia pestis]... 32 2.3
gi|1401295 (U59895) protein kinase A [Yersinia enterocolitica] 31 5.2
gi|119567|sp|P25932|ESCA_DROME ESCARGOT PROTEIN (FLEABAG PROTEIN... 31 8.9
>gi|1946369 (U93215) unknown protein [Arabidopsis thaliana]
Length = 516
Score = 34.0 bits (76), Expect = 0.78
Identities = 25/113 (22%), Positives = 52/113 (45%), Gaps = 2/113 (1%)
Query: 549 QMELSLKTNEFLIHSKTXHAYLEIGXIYKQXIYYNGKNNTPNQKFSLHLLDDGSVSIKNG 370
++EL + L+ ++ + ++K Y G+ N+K +H +D ++KN
Sbjct: 169 ELELQETKQKLLLQQESVDGDNNVDLLHKITTY-EGELKEANEKMRMH--EDEIANLKNQ 225
Query: 369 NLCWMYYRYTDTIXLE--NCDFNNMETKFEILFTDTIDKDEEXQILKDKITQLXK 211
+M + D + E + D + +TK + + T + +EE I K+K+ K
Sbjct: 226 LQSFMSFDTEDHLGAEQKSVDLDKEDTKEDAVATKVLALEEELSIAKEKLQHFEK 280
>gi|2315791 (AF016684) No definition line found [Caenorhabditis elegans]
Length = 425
Score = 32.8 bits (73), Expect = 1.8
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 348 YNTSNINFHS**KLTRHLTNVKKISDLEYCFFHCNILXAYIXFLFLNKHXGF*NVSKIHS 527
Y S I +H ++TR T +K Y +FH ++ FL + F +++ +
Sbjct: 300 YKDSLIKYHGQREMTRGFTINRKNGTTAYVYFHITHPLEFVVFLRITASHSFRSLAIVDQ 359
Query: 528 SLMTTP 545
+MT+P
Sbjct: 360 GVMTSP 365
>gi|3411143 (AF054980) protein kinase YopO [Yersinia enterocolitica]
>gi|4324326|gb|AAD16803| (AF102990) protein kinase YopO
[Yersinia enterocolitica]
Length = 729
Score = 32.5 bits (72), Expect = 2.3
Identities = 22/85 (25%), Positives = 43/85 (49%), Gaps = 7/85 (8%)
Query: 408 HLLDDGSVSIKNGNLCWMYYRYTDTIX------LENCDFNNMETKFEILFTDTIDKDEEX 247
H++D+ I + + YT I ++ +N E L TID++
Sbjct: 357 HVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAK 416
Query: 246 QILKDKIT-QLXKINTEIYKDDPVQIAEIMSL 154
QILKD +T ++ ++T++ + P ++ E+ L
Sbjct: 417 QILKDTLTGEMSPLSTDVRRITPKKLRELSDL 448
>gi|549805|sp|Q05608|YPKA_YERPS PROTEIN KINASE YPKA PRECURSOR >gi|478828|pir||S30060 protein kinase
ypkA - Yersinia pseudotuberculosis
>gi|49187|emb|CAA49215| (X69439) YpkA [Yersinia
pseudotuberculosis] >gi|499632 (L33833) secreted protein
kinase [Yersinia pseudotuberculosis]
>gi|445087|prf||1908395A protein kinase [Yersinia
pseudotuberculosis]
Length = 732
Score = 32.5 bits (72), Expect = 2.3
Identities = 22/85 (25%), Positives = 43/85 (49%), Gaps = 7/85 (8%)
Query: 408 HLLDDGSVSIKNGNLCWMYYRYTDTIX------LENCDFNNMETKFEILFTDTIDKDEEX 247
H++D+ I + + YT I ++ +N E L TID++
Sbjct: 360 HVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAK 419
Query: 246 QILKDKIT-QLXKINTEIYKDDPVQIAEIMSL 154
QILKD +T ++ ++T++ + P ++ E+ L
Sbjct: 420 QILKDTLTGEMSPLSTDVRRITPKKLRELSDL 451
>gi|2996279 (AF053946) protein kinase A homolog [Yersinia pestis] >gi|3822045
(AF074612) secreted protein kinase [Yersinia pestis]
Length = 732
Score = 32.5 bits (72), Expect = 2.3
Identities = 22/85 (25%), Positives = 43/85 (49%), Gaps = 7/85 (8%)
Query: 408 HLLDDGSVSIKNGNLCWMYYRYTDTIX------LENCDFNNMETKFEILFTDTIDKDEEX 247
H++D+ I + + YT I ++ +N E L TID++
Sbjct: 360 HVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAK 419
Query: 246 QILKDKIT-QLXKINTEIYKDDPVQIAEIMSL 154
QILKD +T ++ ++T++ + P ++ E+ L
Sbjct: 420 QILKDTLTGEMSPLSTDVRRITPKKLRELSDL 451
>gi|1401295 (U59895) protein kinase A [Yersinia enterocolitica]
Length = 728
Score = 31.3 bits (69), Expect = 5.2
Identities = 22/85 (25%), Positives = 42/85 (48%), Gaps = 7/85 (8%)
Query: 408 HLLDDGSVSIKNGNLCWMYYRYTDTIX------LENCDFNNMETKFEILFTDTIDKDEEX 247
H++D+ I + + YT I ++ +N E L TID++
Sbjct: 357 HVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAK 416
Query: 246 QILKDKIT-QLXKINTEIYKDDPVQIAEIMSL 154
QILKD +T ++ + T++ + P ++ E+ L
Sbjct: 417 QILKDTLTGEMSPLPTDVRRITPKKLRELSDL 448
>gi|119567|sp|P25932|ESCA_DROME ESCARGOT PROTEIN (FLEABAG PROTEIN) >gi|542571|pir||S33639 finger
protein escargot - fruit fly (Drosophila melanogaster)
>gi|157367 (M83207) escargot-encoded protein [Drosophila
melanogaster]
Length = 470
Score = 30.5 bits (67), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (50%)
Query: 510 HSKTXHAYLEIGXIYKQXIYYNGKNNTPNQKFSLHLLDDGSVSIKNGNL 364
++ T H + I Y + YY+ ++ TP S L +D S+ KN NL
Sbjct: 223 YTHTHHHHAPISPAYSENSYYSMRSMTPESSCSSSLPEDLSLKHKNLNL 271
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70899763
Number of Sequences: 369800
Number of extensions: 1099464
Number of successful extensions: 2909
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2907
Number of HSP's gapped (non-prelim): 7
length of query: 185
length of database: 113023754
effective HSP length: 53
effective length of query: 131
effective length of database: 93424354
effective search space: 12238590374
effective search space used: 12238590374
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)