BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14-19R
         (781 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2429545 (AF025472) Similar to reverse transcriptase [Caenorha...    31  8.1


>gi|2429545 (AF025472) Similar to reverse transcriptase [Caenorhabditis
           elegans]
           Length = 743
           
 Score = 31.3 bits (69), Expect = 8.1
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 540 IFKPRK*IKP----NLIYEYKIFEIFFYLFRKKVSANTSFSLQIFVSFSFDIIIAYFNLK 373
           +FK R+ +K     N+++ +K+F  +    R K  A + F +  F+   F ++  ++NL+
Sbjct: 667 MFKCRQILKNFRSLNMMFYFKLFNTYQPFARAKARAPSGFVVSRFLKHIFSLVFEFYNLR 726

Query: 372 QK 367
            K
Sbjct: 727 LK 728


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141351018
Number of Sequences: 368476
Number of extensions: 2715034
Number of successful extensions: 5311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5310
Number of HSP's gapped (non-prelim): 1
length of query: 260
length of database: 112640273
effective HSP length: 54
effective length of query: 205
effective length of database: 92742569
effective search space: 19012226645
effective search space used: 19012226645
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)