BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14-16R
(599 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1545856 (U50396) WbpG [Pseudomonas aeruginosa] 33 2.0
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 32 2.6
gi|124309|sp|P13504|IL1R_MOUSE INTERLEUKIN-1 RECEPTOR, TYPE I PR... 31 5.8
gi|2143808|pir||I56526 interleukin 1 receptor type I - rat >gi|4... 31 5.8
gi|400047|sp|Q02955|IL1R_RAT INTERLEUKIN-1 RECEPTOR, TYPE I PREC... 31 5.8
gi|4019241 (AF083424) transport protein [Ateline herpesvirus 3] 31 5.8
gi|1171590|emb|CAA64575| (X95275) rps2 [Plasmodium falciparum] 31 5.8
gi|453517 (L28677) ORF3 [Tetrahymena pyriformis] 31 7.6
>gi|1545856 (U50396) WbpG [Pseudomonas aeruginosa]
Length = 376
Score = 32.8 bits (73), Expect = 2.0
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 163 EKTF*KTFQNYYLECKKVYK*ILFDKKNLHYRSIHLFVQLKK 288
E F K FQNYYL K Y DK+ LHY S+ L Q+ +
Sbjct: 262 ESIFTKLFQNYYLPTKFGY-----DKRKLHYSSMILSGQMTR 298
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 32.5 bits (72), Expect = 2.6
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 398 NKFLIIFHCIKHKLIVIEYYNLLKIYNHQICCINNIYFFN*TN------KWIER**RFFL 237
NK+ +I+ I + + YY KIYN+ IN+ Y+F N I+ + F
Sbjct: 487 NKYNVIYFLINYFNLFSNYY--YKIYNNNYNFINSNYYFKKMNFILKNFNNIQILNKLFY 544
Query: 236 SNRIYLYTFLHSK**FWKVF*KVFSNDILKKNSYYFK 126
N I++Y + + K F ++ + +N I+KK ++K
Sbjct: 545 VNNIFIY-YKYEKKLF--IYLNIINNIIIKKYLNFYK 578
>gi|124309|sp|P13504|IL1R_MOUSE INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-1R-1) (P80)
>gi|90986|pir||A32604 interleukin-1 receptor precursor -
mouse >gi|309399 (M20658) interleukin 1 receptor
precursor [Mus musculus]
Length = 576
Score = 31.3 bits (69), Expect = 5.8
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 243 KSSLSFYPFVCSVKEINIIYTAYLVIIY 326
KS YPF+C VK NI +A++ +IY
Sbjct: 305 KSQFYRYPFICVVKNTNIFESAHVQLIY 332
>gi|2143808|pir||I56526 interleukin 1 receptor type I - rat >gi|451306 (M95578) interleukin
1 receptor type I [Rattus norvegicus]
Length = 590
Score = 31.3 bits (69), Expect = 5.8
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 228 SV*QKKSSLSFYPFVCSVKEINIIYTAYLVIIY 326
+V + KS YPF+C VK +I+ TA++ ++Y
Sbjct: 314 NVSEVKSQFYRYPFICFVKNTHILETAHVRLVY 346
>gi|400047|sp|Q02955|IL1R_RAT INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-1R-1) (P80)
Length = 576
Score = 31.3 bits (69), Expect = 5.8
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 228 SV*QKKSSLSFYPFVCSVKEINIIYTAYLVIIY 326
+V + KS YPF+C VK +I+ TA++ ++Y
Sbjct: 300 NVSEVKSQFYRYPFICFVKNTHILETAHVRLVY 332
>gi|4019241 (AF083424) transport protein [Ateline herpesvirus 3]
Length = 680
Score = 31.3 bits (69), Expect = 5.8
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 374 CIKHKLIVIEYYNLLKIYNHQICCINNIYFF 282
C KHKLIV ++YN + + ++C IN+I F
Sbjct: 103 CSKHKLIVFQFYNNCSV-SVRMCIINDIEIF 132
>gi|1171590|emb|CAA64575| (X95275) rps2 [Plasmodium falciparum]
Length = 227
Score = 31.3 bits (69), Expect = 5.8
Identities = 32/119 (26%), Positives = 54/119 (44%), Gaps = 3/119 (2%)
Query: 371 IKHKLIVIEYYNLLKIYNHQICCI-NNIYFFN*TNKWIER**R--FFLSNRIYLYTFLHS 201
+ +K++ I NL+K + +IC + NN+Y NKW+ F L +I +Y ++
Sbjct: 62 MNNKILFINNNNLIKNFTIKICNLTNNLYI----NKWVSGLLTNWFVLKKKIIIYIWIS- 116
Query: 200 K**FWKVF*KVFSNDILKKNSYYFKS*MKN**KVLVSQIINLKKINIHNRIKLINSMNNC 21
K+ + N+IL K Y + II +K N N IK + ++
Sbjct: 117 -----KIIKNKYFNNILSKKCIYNLN------------IIYIKLYNKFNGIKNMINLPKY 159
Query: 20 IF 15
IF
Sbjct: 160 IF 161
>gi|453517 (L28677) ORF3 [Tetrahymena pyriformis]
Length = 98
Score = 30.9 bits (68), Expect = 7.6
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 413 FVIFIN-KFLIIFHCIKHKLI---VIEYYNLLK--IYNHQICCINNIYFFN*TNKWIER* 252
F+IFIN FL+IF+ LI +I YY LL + N + +NN N NK
Sbjct: 5 FLIFINFLFLLIFYFFFEILIKFHMIVYYLLLLYVVINIMMISLNN----NKNNK----- 55
Query: 251 *RFFLSNRIYLYTFLHSK**FWKVF*KVFSNDILKKNSYYFKS*M 117
F L I++ F FW + + + D++ N +Y+ + M
Sbjct: 56 --FNLKYNIFMMLFFMFI--FWNMKMNIINTDLVMSNMFYYMNIM 96
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71572329
Number of Sequences: 369800
Number of extensions: 1186023
Number of successful extensions: 1660
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 11
length of query: 199
length of database: 113023754
effective HSP length: 53
effective length of query: 146
effective length of database: 93424354
effective search space: 13639955684
effective search space used: 13639955684
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)