BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14-14R
         (590 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3319049|pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaer...    31  7.4
gi|139828|sp|P19148|XYLA_THETU XYLOSE ISOMERASE >gi|68442|pir||I...    31  7.4


>gi|3319049|pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium
           Thermosulfurigenes >gi|3319050|pdb|1A0C|B Chain B,
           Xylose Isomerase From Thermoanaerobacterium
           Thermosulfurigenes >gi|3319051|pdb|1A0C|C Chain C,
           Xylose Isomerase From Thermoanaerobacterium
           Thermosulfurigenes >gi|3319052|pdb|1A0C|D Chain D,
           Xylose Isomerase From Thermoanaerobacterium
           Thermosulfurigenes
           Length = 438
           
 Score = 30.9 bits (68), Expect = 7.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 309 IARYLCAVCINTXNKINASY*CNIDRTINPYXDIITQLNTVLSSVVVM 166
           IA+          +KINA Y C  DR I P  D + + N  L ++V M
Sbjct: 77  IAKARVEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTIVAM 124



>gi|139828|sp|P19148|XYLA_THETU XYLOSE ISOMERASE >gi|68442|pir||ISCLXM xylose isomerase (EC
           5.3.1.5) - Thermoanaerobacterium thermosulfurigenes
           >gi|144930 (J05650) xylose isomerase (xylA) [Clostridium
           thermosulfurogenes]
           Length = 439
           
 Score = 30.9 bits (68), Expect = 7.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 309 IARYLCAVCINTXNKINASY*CNIDRTINPYXDIITQLNTVLSSVVVM 166
           IA+          +KINA Y C  DR I P  D + + N  L ++V M
Sbjct: 78  IAKARVEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTIVAM 125


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102563009
Number of Sequences: 368476
Number of extensions: 1811814
Number of successful extensions: 3281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3279
Number of HSP's gapped (non-prelim): 2
length of query: 196
length of database: 112640273
effective HSP length: 53
effective length of query: 143
effective length of database: 93111045
effective search space: 13314879435
effective search space used: 13314879435
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)