BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 14-11R
(430 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3880850|emb|CAA21023| (AL031633) similar to ATPases associate... 36 0.14
gi|84041|pir||F22845 hypothetical protein 6 - Trypanosoma brucei... 34 0.54
gi|84045|pir||A05235 hypothetical protein A-288 - Trypanosoma br... 34 0.54
gi|897642 (M14820) ORF2 bases 1807-2850; first start codon at 20... 34 0.54
gi|1655928 (U66558) cell division control protein 6 [Xenopus lae... 34 0.71
gi|1881587 (U76834) Cdc6-related protein [Xenopus laevis] 34 0.71
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 31 6.1
gi|1684903 (U77949) Cdc6-related protein [Homo sapiens] >gi|2465... 30 8.0
gi|2688552 (AE001164) exodeoxyribonuclease V, alpha chain (recD)... 30 8.0
>gi|3880850|emb|CAA21023| (AL031633) similar to ATPases associated with various cellular
activities (AAA); cDNA EST yk427e2.5 comes from this
gene; cDNA EST EMBL:D33587 comes from this gene; cDNA
EST EMBL:D36439 comes from this gene; cDNA EST
EMBL:D6905...
Length = 636
Score = 36.0 bits (81), Expect = 0.14
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
Query: 273 MKKFTEKLFLRHNEVKKIREFLFS-------KEKILHISGNPGTGKTFTVKATLKNRK 425
+ K EKL R E ++I +F+ + ++ISG PGTGKT TV+A + + K
Sbjct: 260 LSKVPEKLPCRDIESREIEKFIREVIDPKRGESSAMYISGVPGTGKTATVRAVVNSMK 317
>gi|84041|pir||F22845 hypothetical protein 6 - Trypanosoma brucei mitochondrion (SGC6)
Length = 347
Score = 34.0 bits (76), Expect = 0.54
Identities = 31/129 (24%), Positives = 52/129 (40%)
Query: 424 FLFFNVAFTVNVFPVPGFPLICNIFSFENKNSLIFLTSLCLRNSFSVNFFMGFYKNNTMI 245
FLFFN V++ L+C+I + F++ L L +F NF GF+ ++
Sbjct: 176 FLFFNFDIFVSI-------LLCDIVYLD------FISLLLLYFNFIFNFIYGFFSFVIIL 222
Query: 244 LHKKXXXXXXXXXXXXXYDYYKTTIXYYNILLFSLYHTFYYRFILLPSHYIIIPKSLYPY 65
++ T Y I + LY+ ++ I S YI++P L +
Sbjct: 223 ------GLLFLLLFLVINLFFGFTFLVYGIQIILLYYVYWLYMIYSRSCYILMPAILIFF 276
Query: 64 VFS*ESIFF 38
F +FF
Sbjct: 277 KFIYFDVFF 285
>gi|84045|pir||A05235 hypothetical protein A-288 - Trypanosoma brucei mitochondrion
(SGC6)
Length = 288
Score = 34.0 bits (76), Expect = 0.54
Identities = 31/129 (24%), Positives = 52/129 (40%)
Query: 424 FLFFNVAFTVNVFPVPGFPLICNIFSFENKNSLIFLTSLCLRNSFSVNFFMGFYKNNTMI 245
FLFFN V++ L+C+I + F++ L L +F NF GF+ ++
Sbjct: 117 FLFFNFDIFVSI-------LLCDIVYLD------FISLLLLYFNFIFNFIYGFFSFVIIL 163
Query: 244 LHKKXXXXXXXXXXXXXYDYYKTTIXYYNILLFSLYHTFYYRFILLPSHYIIIPKSLYPY 65
++ T Y I + LY+ ++ I S YI++P L +
Sbjct: 164 ------GLLFLLLFLVINLFFGFTFLVYGIQIILLYYVYWLYMIYSRSCYILMPAILIFF 217
Query: 64 VFS*ESIFF 38
F +FF
Sbjct: 218 KFIYFDVFF 226
>gi|897642 (M14820) ORF2 bases 1807-2850; first start codon at 2032; putative
[Trypanosoma brucei]
Length = 272
Score = 34.0 bits (76), Expect = 0.54
Identities = 31/129 (24%), Positives = 52/129 (40%)
Query: 424 FLFFNVAFTVNVFPVPGFPLICNIFSFENKNSLIFLTSLCLRNSFSVNFFMGFYKNNTMI 245
FLFFN V++ L+C+I + F++ L L +F NF GF+ ++
Sbjct: 101 FLFFNFDIFVSI-------LLCDIVYLD------FISLLLLYFNFIFNFIYGFFSFVIIL 147
Query: 244 LHKKXXXXXXXXXXXXXYDYYKTTIXYYNILLFSLYHTFYYRFILLPSHYIIIPKSLYPY 65
++ T Y I + LY+ ++ I S YI++P L +
Sbjct: 148 ------GLLFLLLFLVINLFFGFTFLVYGIQIILLYYVYWLYMIYSRSCYILMPAILIFF 201
Query: 64 VFS*ESIFF 38
F +FF
Sbjct: 202 KFIYFDVFF 210
>gi|1655928 (U66558) cell division control protein 6 [Xenopus laevis]
Length = 554
Score = 33.6 bits (75), Expect = 0.71
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 288 EKLFLRHNEVKKIREFLFS-----KEKILHISGNPGTGKTFTVKATLKNRK 425
E+L R +E I+ FL S K L+ISG PGTGKT + L+ K
Sbjct: 164 ERLLARESETAFIKTFLTSHVSAGKAGSLYISGAPGTGKTACLNKLLQESK 214
>gi|1881587 (U76834) Cdc6-related protein [Xenopus laevis]
Length = 554
Score = 33.6 bits (75), Expect = 0.71
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 288 EKLFLRHNEVKKIREFLFS-----KEKILHISGNPGTGKTFTVKATLKNRK 425
E+L R +E I+ FL S K L+ISG PGTGKT + L+ K
Sbjct: 164 ERLLARESETAFIKTFLTSHVSARKAGSLYISGAPGTGKTACLNKLLQESK 214
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 30.5 bits (67), Expect = 6.1
Identities = 25/87 (28%), Positives = 47/87 (53%), Gaps = 22/87 (25%)
Query: 334 NSLIFLTSLCLRNS-----FSVNFFMGFYKNNTMILHKKXXXXXXXXXXXXXYDYY---- 182
N++I++ ++C + + + +NF+ +++ + IL+ YY
Sbjct: 744 NNIIYIYNICNKYNINHYKYKLNFYSYIFEDISSILYSGYSLHTEFYSINKNLKYYFRFL 803
Query: 181 -----------KTTIXYYNILLFSLYHTFYYRFILLPSHY--IIIPKSL 74
+ I YNIL+ S+ + Y+ I LPS Y +II K L
Sbjct: 804 LKSINIYQATKSSYIYVYNILIESILKQYSYQNIYLPSIYFELIIKKML 852
>gi|1684903 (U77949) Cdc6-related protein [Homo sapiens] >gi|2465437 (AF022109)
HsCdc18p [Homo sapiens]
>gi|4502703|ref|NP_001245.1|pCDC18L| CDC18 (cell
division cycle 18, S.pombe, homolog)-like
Length = 560
Score = 30.1 bits (66), Expect = 8.0
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 288 EKLFLRHNEVKKIREFLFS-----KEKILHISGNPGTGKTFTVKATLKNRK 425
++L R E+ IR FL K L++SG PGTGKT + L++ K
Sbjct: 170 DRLPAREREMDVIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLK 220
>gi|2688552 (AE001164) exodeoxyribonuclease V, alpha chain (recD) [Borrelia
burgdorferi]
Length = 610
Score = 30.1 bits (66), Expect = 8.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 300 LRHNEVKKIREFLFSKEKILHISGNPGTGKTFTVKATLK 416
L ++ +R+ L K +SG PGTGKT TV LK
Sbjct: 195 LNKEQITSVRKAL--KSNFFLLSGGPGTGKTTTVNYILK 231
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67205946
Number of Sequences: 368476
Number of extensions: 1060012
Number of successful extensions: 4367
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4357
Number of HSP's gapped (non-prelim): 25
length of query: 143
length of database: 112640273
effective HSP length: 52
effective length of query: 90
effective length of database: 93479521
effective search space: 8413156890
effective search space used: 8413156890
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 65 (29.7 bits)