BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII21R
(787 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4493933|emb|CAB38969| (AL034556) predicted using hexExon; MAL... 34 0.94
gi|1723154|sp|P47589|Y347_MYCGE HYPOTHETICAL PROTEIN MG347 >gi|1... 34 0.94
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 32 3.6
gi|3660712 (AF063439) period [Plagodis fervidaria] 32 4.7
gi|92009|pir||JS0610 beta-galactosidase (EC 3.2.1.23) / glycosyl... 32 6.2
gi|818031|emb|CAA40069| (X56747) lactase-phlorizin hydrolase pre... 32 6.2
gi|139145|sp|P15402|RRPO_WCMVO RNA REPLICATION PROTEIN (147 KD P... 31 8.1
gi|139144|sp|P09498|RRPO_WCMVM RNA REPLICATION PROTEIN (147 KD P... 31 8.1
gi|476353|pir||A46350 RNA-directed RNA polymerase (EC 2.7.7.48) ... 31 8.1
>gi|4493933|emb|CAB38969| (AL034556) predicted using hexExon; MAL3P5.1 (PFC0575w),
Hypothetical protein, len: 645 aa [Plasmodium
falciparum]
Length = 644
Score = 34.4 bits (77), Expect = 0.94
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 74 ICKK*FFVYCNIIVYRH-SQIFIIFFPYFCNFLKLSIYENISHEII 208
IC +F YC ++ ++ S + I FF +FC FL +I E I E +
Sbjct: 192 ICTLIYFTYCMCLLIKYISHLCIFFFFFFCFFLCYNILERIYEECV 237
>gi|1723154|sp|P47589|Y347_MYCGE HYPOTHETICAL PROTEIN MG347 >gi|1361593|pir||D64238 hypothetical
protein homolog MG347 - Mycoplasma genitalium (SGC3)
>gi|3844930 (U39716) conserved hypothetical protein
[Mycoplasma genitalium]
Length = 210
Score = 34.4 bits (77), Expect = 0.94
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 658 REIHNKIKNNAFRKIFYKKNLNS--VRFIXKIEALAEYNLNRLXKTREILYIEHSRMFPN 485
R I ++ + F K+F+ + + + F + L EY L L + +I I H N
Sbjct: 118 RHIQRRLTSPDFLKLFWNLLVKNGLIEFKTDNDKLFEYTLTTLQENSQIFEIIHQITDLN 177
Query: 484 DYESIMNSNITDYYQEFIKTTI 419
+ E ++IT+Y Q F++ I
Sbjct: 178 NSEFSFQNSITEYEQRFMELEI 199
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 32.5 bits (72), Expect = 3.6
Identities = 53/206 (25%), Positives = 85/206 (40%), Gaps = 16/206 (7%)
Query: 658 REIHNK-IKNNAFRKIFYKKNLNSVRFIXKIEALAEYNLNRLXKTREILY--IEHSRMFP 488
+ IHNK I N + Y ++ K LN ++Y I + +F
Sbjct: 449 KNIHNKWILYNIYTYYLYYYHIKFYNLYNK-----GIILNNNNNKYNVIYFLINYFNLFS 503
Query: 487 NDYESIMNSNI----TDYY---QEFIKTTINNIILLSTVNQIYNCFSEIENYIIETFFIL 329
N Y I N+N ++YY FI NNI +L+ + + N F + Y + F L
Sbjct: 504 NYYYKIYNNNYNFINSNYYFKKMNFILKNFNNIQILNKLFYVNNIFIYYK-YEKKLFIYL 562
Query: 328 YQIERILTSIICNDRS*EISLPCGYD*MNMHTDFAEFLDIYD-----FMRYIFINTQLQK 164
I I+ N Y+ + + FL +Y+ + +Y+ +N +
Sbjct: 563 NIINNIIIKKYLN------FYKYTYNKLFFIKKYNNFLYLYEIFKYNWYKYLLLNNK-YN 615
Query: 163 IAKVGEKYYKNL-GMTINYNIAVNKELFLANYILIDQMHLYK 41
+ + Y K L IN N+ K LF N I +YK
Sbjct: 616 LYIIYNNYIKYLYKYNININLYFIKNLFYNNNNFIHNHIIYK 657
>gi|3660712 (AF063439) period [Plagodis fervidaria]
Length = 353
Score = 32.1 bits (71), Expect = 4.7
Identities = 22/66 (33%), Positives = 35/66 (52%), Gaps = 3/66 (4%)
Query: 104 NIIVYRHSQIFIIFFPYFCNFLKLSIYENISHEIINIQK---FCKIRVHIHLIISAW*RN 274
+ I + H + F N L L + NI+HE I ++ C+IR H +LIIS R
Sbjct: 24 SFIEFVHPRDQSTFASQITNGLALPKFGNITHEKIRVESTTMVCRIRRHRNLIISFGTRE 83
Query: 275 FLASIVAYN 301
LA+ + ++
Sbjct: 84 RLAAFMPFH 92
>gi|92009|pir||JS0610 beta-galactosidase (EC 3.2.1.23) / glycosylceramidase (EC 3.2.1.62)
precursor - rat
Length = 1928
Score = 31.7 bits (70), Expect = 6.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 559 AEYNLNRLXKTREILY-IEHSRMFPNDYESIMNSNITDYYQEFIKTTINNII 407
A+ N+ R K + + I SR+FP S +N DYY I + ++N I
Sbjct: 963 ADLNILRTLKVKSYRFSISWSRIFPTGRNSTINKQGVDYYNRLIDSLVDNNI 1014
>gi|818031|emb|CAA40069| (X56747) lactase-phlorizin hydrolase precursor [Rattus rattus]
Length = 1922
Score = 31.7 bits (70), Expect = 6.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 559 AEYNLNRLXKTREILY-IEHSRMFPNDYESIMNSNITDYYQEFIKTTINNII 407
A+ N+ R K + + I SR+FP S +N DYY I + ++N I
Sbjct: 957 ADLNILRTLKVKSYRFSISWSRIFPTGRNSTINKQGVDYYNRLIDSLVDNNI 1008
>gi|139145|sp|P15402|RRPO_WCMVO RNA REPLICATION PROTEIN (147 KD PROTEIN) (ORF 1) [CONTAINS:
RNA-DIRECTED RNA POLYMERASE ; PROBABLE HELICASE]
>gi|61324|emb|CAA34628| (X16636) ORF 1 (AA 1-1294)
[White clover mosaic virus]
Length = 1294
Score = 31.3 bits (69), Expect = 8.1
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 625 FRKIFYKKNLNSVRFIXKIEALAEYNLNRLXK--TREILYIEHSRMFPNDYESIMNSNIT 452
F +IF+ +NLN + K++A+ + + K T +Y + ++ I S ++
Sbjct: 273 FPQIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQL-------IKTSELS 325
Query: 451 DYYQEFIKTTINNIILLSTVNQIYNCFSEI 362
DY+ + I +N + +S ++ I N +S+I
Sbjct: 326 DYHPDEIVHIVNYFVFISKLDSI-NSYSDI 354
>gi|139144|sp|P09498|RRPO_WCMVM RNA REPLICATION PROTEIN (147 KD PROTEIN) (ORF 1) [CONTAINS:
RNA-DIRECTED RNA POLYMERASE ; PROBABLE HELICASE]
>gi|77377|pir||S01085 hypothetical protein 1 - white
clover mosaic virus >gi|61318|emb|CAA29904| (X06728)
147K ORF (AA 1-1294) [White clover mosaic virus]
Length = 1294
Score = 31.3 bits (69), Expect = 8.1
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 625 FRKIFYKKNLNSVRFIXKIEALAEYNLNRLXK--TREILYIEHSRMFPNDYESIMNSNIT 452
F +IF+ +NLN + K++A+ + + K T +Y + ++ I S ++
Sbjct: 273 FPQIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQL-------IKTSELS 325
Query: 451 DYYQEFIKTTINNIILLSTVNQIYNCFSEI 362
DY+ + I +N + +S ++ I N +S+I
Sbjct: 326 DYHPDEIVHIVNYFVFISKLDSI-NSYSDI 354
>gi|476353|pir||A46350 RNA-directed RNA polymerase (EC 2.7.7.48) - white clover mosaic
virus (strain O)
Length = 1293
Score = 31.3 bits (69), Expect = 8.1
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 625 FRKIFYKKNLNSVRFIXKIEALAEYNLNRLXK--TREILYIEHSRMFPNDYESIMNSNIT 452
F +IF+ +NLN + K++A+ + + K T +Y + ++ I S ++
Sbjct: 273 FPQIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPTERDIYAKIRQL-------IKTSELS 325
Query: 451 DYYQEFIKTTINNIILLSTVNQIYNCFSEI 362
DY+ + I +N + +S ++ I N +S+I
Sbjct: 326 DYHPDEIVHIVNYFVFISKLDSI-NSYSDI 354
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133680604
Number of Sequences: 368476
Number of extensions: 2530602
Number of successful extensions: 5682
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5677
Number of HSP's gapped (non-prelim): 14
length of query: 262
length of database: 112640273
effective HSP length: 54
effective length of query: 207
effective length of database: 92742569
effective search space: 19197711783
effective search space used: 19197711783
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)