BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII12F
(832 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2827552|emb|CAA16560| (AL021635) predicted protein [Arabidops... 49 1e-05
gi|3873666|emb|CAA93457| (Z69634) cDNA EST EMBL:C11678 comes fro... 41 0.004
gi|1176580|sp|P42836|YN66_YEAST HYPOTHETICAL 39.2 KD PROTEIN IN ... 41 0.010
gi|1255324 (U51999) C43H6.7 gene product [Caenorhabditis elegans] 37 0.012
gi|2132817|pir||S61981 probable membrane protein YOL003c - yeast... 41 0.013
gi|3860313|emb|CAA10124| (AJ012683) hypothetical protein [Cicer ... 40 0.018
gi|3219912|sp|O14345|YB3F_SCHPO HYPOTHETICAL 38.1 KD PROTEIN C2F... 40 0.023
gi|3845261 (AE001414) metal binding protein (DHHC domain) [Plasm... 39 0.030
gi|3874398|emb|CAB03897| (Z81473) cDNA EST yk435d2.5 comes from ... 39 0.030
gi|3947545|emb|CAB03898| (Z81473) cDNA EST EMBL:D75353 comes fro... 39 0.030
gi|3417417|emb|CAA20305| (AL031261) hypothetical protein [Schizo... 36 0.044
gi|466053|sp|P34679|YO41_CAEEL HYPOTHETICAL 68.7 KD PROTEIN ZK75... 39 0.052
gi|4220527|emb|CAA23000| (AL035356) putative protein [Arabidopsi... 36 0.073
gi|2252856 (AF013294) No definition line found [Arabidopsis thal... 36 0.074
gi|3877900|emb|CAB01873| (Z79600) Similarity with yeast hypothet... 34 0.16
gi|2773183 (AF039720) No definition line found [Caenorhabditis e... 37 0.20
gi|3402718 (AC004261) hypothetical protein [Arabidopsis thaliana] 36 0.26
gi|470362 (U00046) weak similarity to ZK757.1 [Caenorhabditis el... 36 0.26
gi|3881079|emb|CAA21738| (AL032657) cDNA EST yk207f6.5 comes fro... 36 0.45
gi|1077581|pir||S52691 probable membrane protein YDR126w - yeast... 36 0.45
gi|747900|emb|CAA88679| (Z48758) unknown [Saccharomyces cerevisiae] 36 0.45
gi|1175373|sp|Q09701|YA2A_SCHPO HYPOTHETICAL 72.5 KD PROTEIN C2F... 34 1.7
gi|1363741|pir||S59392 probable membrane protein YLR246w - yeast... 34 1.7
gi|2342647 (U90653) DHHC-domain-containing cysteine-rich protein... 33 2.3
gi|3873647|emb|CAA94868| (Z71177) Similarity with 39.2kd yeast p... 33 3.0
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 32 5.1
gi|3875664|emb|CAB05476| (Z83104) predicted using Genefinder [Ca... 32 6.7
>gi|2827552|emb|CAA16560| (AL021635) predicted protein [Arabidopsis thaliana]
Length = 820
Score = 49.2 bits (115), Expect = 1e-05
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C CN YKPPRSHHCS C +C LKM
Sbjct: 642 CRKCNQYKPPRSHHCSVCGRCILKM 666
Score = 20.8 bits (42), Expect = 1e-05
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 61 ISTCIAFHNYKXFYNFL 11
+ C+ +NYK F FL
Sbjct: 673 VVNCVGANNYKSFLLFL 689
>gi|3873666|emb|CAA93457| (Z69634) cDNA EST EMBL:C11678 comes from this gene; cDNA EST
EMBL:C13926 comes from this gene; cDNA EST yk211g12.3
comes from this gene; cDNA EST yk211g12.5 comes from
this gene; cDNA EST yk362e5.3 comes from this gene; cDNA
ES... >gi|3878711|emb|CAA92831| (Z68507) cDNA EST
EMBL:C11678 comes from this gene; cDNA EST EMBL:C13926
comes from this gene; cDNA EST yk211g12.3 comes from
this gene; cDNA EST yk211g12.5 comes from this gene;
cDNA EST yk362e5.3 comes from this gene; cDNA ES...
Length = 447
Score = 40.6 bits (93), Expect = 0.004
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C CN +K PRSHHCS C +C +KM
Sbjct: 108 CVPCNGFKVPRSHHCSKCDRCCMKM 132
Score = 20.8 bits (42), Expect = 0.004
Identities = 6/18 (33%), Positives = 11/18 (60%)
Query: 61 ISTCIAFHNYKXFYNFLY 8
I+ C+ N++ F FL+
Sbjct: 139 INNCVGHRNHQYFLRFLF 156
>gi|1176580|sp|P42836|YN66_YEAST HYPOTHETICAL 39.2 KD PROTEIN IN EGT2-KRE1 INTERGENIC REGION
>gi|1362346|pir||S55863 probable membrane protein
YNL326c - yeast (Saccharomyces cerevisiae)
>gi|633660|emb|CAA86372| (Z46259) N0325 [Saccharomyces
cerevisiae] >gi|1302443|emb|CAA96258| (Z71602) ORF
YNL326c [Saccharomyces cerevisiae]
Length = 336
Score = 41.0 bits (94), Expect = 0.010
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C VC+ +KP R HHCS C C LKM
Sbjct: 106 CQVCHVWKPDRCHHCSSCDVCILKM 130
>gi|1255324 (U51999) C43H6.7 gene product [Caenorhabditis elegans]
Length = 306
Score = 37.1 bits (84), Expect = 0.012
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C+ CN +K +HHCS C KC L M
Sbjct: 105 CSKCNYWKSDNAHHCSVCEKCVLGM 129
Score = 22.7 bits (47), Expect = 0.012
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 61 ISTCIAFHNYKXFYNFL 11
I+ C+ HN++ F+ F+
Sbjct: 136 INQCVGLHNHRHFFLFI 152
>gi|2132817|pir||S61981 probable membrane protein YOL003c - yeast (Saccharomyces
cerevisiae) >gi|1150993 (U43491) hypothetical protein
UNE378 [Saccharomyces cerevisiae]
>gi|1419765|emb|CAA99002| (Z74745) ORF YOL003c
[Saccharomyces cerevisiae]
Length = 378
Score = 40.6 bits (93), Expect = 0.013
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C C +YKP RSHHC C +C L M
Sbjct: 80 CKKCQSYKPERSHHCKTCNQCVLMM 104
>gi|3860313|emb|CAA10124| (AJ012683) hypothetical protein [Cicer arietinum]
Length = 93
Score = 40.2 bits (92), Expect = 0.018
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 143 CNTYKPPRSHHCSFCRKCYLKM 78
C KPPR HHCS C++C LKM
Sbjct: 2 CQNGKPPRCHHCSICQRCVLKM 23
>gi|3219912|sp|O14345|YB3F_SCHPO HYPOTHETICAL 38.1 KD PROTEIN C2F12.15C IN CHROMOSOME II
>gi|2239244|emb|CAB10162| (Z97211) hypothetical protein
[Schizosaccharomyces pombe]
Length = 329
Score = 39.9 bits (91), Expect = 0.023
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C C YK RSHHCS C KC L+M
Sbjct: 99 CEKCQEYKCDRSHHCSQCNKCILRM 123
>gi|3845261 (AE001414) metal binding protein (DHHC domain) [Plasmodium
falciparum]
Length = 101
Score = 39.5 bits (90), Expect = 0.030
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C CN K RSHHCS C KC +KM
Sbjct: 38 CKKCNLLKIKRSHHCSVCDKCIMKM 62
>gi|3874398|emb|CAB03897| (Z81473) cDNA EST yk435d2.5 comes from this gene; cDNA EST
yk232f11.3 comes from this gene; cDNA EST yk232f11.5
comes from this gene; cDNA EST yk265e1.5 comes from this
gene; cDNA EST yk435d2.3 comes from this gene
[Caenorhabdi...
Length = 302
Score = 39.5 bits (90), Expect = 0.030
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C C++ +PPR+HHC C++C KM
Sbjct: 115 CTRCDSLRPPRAHHCRVCKRCVRKM 139
>gi|3947545|emb|CAB03898| (Z81473) cDNA EST EMBL:D75353 comes from this gene; cDNA EST
EMBL:D72468 comes from this gene [Caenorhabditis
elegans]
Length = 240
Score = 39.5 bits (90), Expect = 0.030
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C C++ +PPR+HHC C++C KM
Sbjct: 53 CTRCDSLRPPRAHHCRVCKRCVRKM 77
>gi|3417417|emb|CAA20305| (AL031261) hypothetical protein [Schizosaccharomyces pombe]
Length = 350
Score = 36.0 bits (81), Expect = 0.044
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 263 YK*ISPYSIR*NRGIVEDVNPFVEQEXXXXXXXXXXICNVCNTYKPPRSHHCSFCRKC 90
Y P+S+ I ED V C+ C+ Y+PPR+ HC C C
Sbjct: 152 YNPAHPWSV-----IPEDRKVLVGSTRSDSVFVNTVYCHTCHLYRPPRASHCHLCDNC 204
Score = 21.9 bits (45), Expect = 0.044
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 61 ISTCIAFHNYKXFYNFL 11
++TCI NY+ ++ FL
Sbjct: 215 LNTCIGRRNYRYYFIFL 231
>gi|466053|sp|P34679|YO41_CAEEL HYPOTHETICAL 68.7 KD PROTEIN ZK757.1 IN CHROMOSOME III
>gi|482217|pir||S41011 hypothetical protein ZK757.1 -
Caenorhabditis elegans >gi|3881771|emb|CAA82387|
(Z29121) ZK757.1 [Caenorhabditis elegans]
Length = 589
Score = 38.7 bits (88), Expect = 0.052
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLK 81
C+ C KP RSHHCS C +C LK
Sbjct: 440 CDKCCCIKPDRSHHCSMCEQCVLK 463
>gi|4220527|emb|CAA23000| (AL035356) putative protein [Arabidopsis thaliana]
Length = 374
Score = 36.0 bits (81), Expect = 0.073
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 152 CNVCNTYKPPRSHHCSFCRKC 90
C+ C Y+PPR HCS C C
Sbjct: 138 CDTCMLYRPPRCSHCSICNNC 158
Score = 21.2 bits (43), Expect = 0.073
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 61 ISTCIAFHNYKXFYNFL 11
+ CI NY+ F+ F+
Sbjct: 169 VGQCIGLRNYRYFFMFV 185
>gi|2252856 (AF013294) No definition line found [Arabidopsis thaliana]
Length = 262
Score = 35.6 bits (80), Expect = 0.074
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 10/25 (40%)
Query: 152 CNVCNTYKPPRSHHCS----------FCRKCYLKM 78
C C KPPR HHCS C++C LKM
Sbjct: 48 CTKCRNVKPPRCHHCSVCKAKSDLFILCQRCVLKM 82
Score = 21.6 bits (44), Expect = 0.074
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 61 ISTCIAFHNYKXFYNFLY 8
I C+ NYK F FL+
Sbjct: 89 IVNCVGARNYKFFLLFLF 106
>gi|3877900|emb|CAB01873| (Z79600) Similarity with yeast hypothetical protein C2F7.10 (Swiss
Prot accession number Q09701) [Caenorhabditis elegans]
Length = 239
Score = 34.4 bits (77), Expect = 0.16
Identities = 22/90 (24%), Positives = 33/90 (36%)
Query: 347 YIIFDFPFYSFVYYDILHAYPLY*R*KYYK*ISPYSIR*NRGIVEDVNPFVEQEXXXXXX 168
+ +F F ++YY ++ YYK R + VNP +
Sbjct: 3 FFVFRFVLLIYIYYSVVF--------HYYK---------ARTLTPVVNPGTPSDSF---- 41
Query: 167 XXXXICNVCNTYKPPRSHHCSFCRKCYLKM 78
C CN +K P + HC C KC +M
Sbjct: 42 -----CIKCNNWKGPSTSHCKACDKCIYRM 66
Score = 21.6 bits (44), Expect = 0.16
Identities = 7/18 (38%), Positives = 10/18 (54%)
Query: 61 ISTCIAFHNYKXFYNFLY 8
I C+ HN F+ FL+
Sbjct: 73 IGQCVGAHNQSHFFLFLF 90
>gi|2773183 (AF039720) No definition line found [Caenorhabditis elegans]
Length = 885
Score = 36.7 bits (83), Expect = 0.20
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C C + KP R+HHCS C +C +M
Sbjct: 86 CQKCASIKPDRAHHCSVCERCIRRM 110
>gi|3402718 (AC004261) hypothetical protein [Arabidopsis thaliana]
Length = 340
Score = 36.4 bits (82), Expect = 0.26
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 152 CNVCNTYKPPRSHHCSFCRKC 90
C+ C Y+PPR+ HCS C C
Sbjct: 166 CDTCLLYRPPRASHCSICNNC 186
>gi|470362 (U00046) weak similarity to ZK757.1 [Caenorhabditis elegans]
Length = 210
Score = 36.4 bits (82), Expect = 0.26
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLKM 78
C +CN KPPR HHC C C +M
Sbjct: 84 CQLCNYRKPPRWHHCRRCNLCVHRM 108
>gi|3881079|emb|CAA21738| (AL032657) cDNA EST yk207f6.5 comes from this gene; cDNA EST
yk201f11.5 comes from this gene; cDNA EST yk207f6.3
comes from this gene [Caenorhabditis elegans]
Length = 368
Score = 35.6 bits (80), Expect = 0.45
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYL 84
C C Y+PPR HC+ C C L
Sbjct: 166 CTTCRLYRPPRCSHCAICDNCVL 188
>gi|1077581|pir||S52691 probable membrane protein YDR126w - yeast (Saccharomyces
cerevisiae)
Length = 336
Score = 35.6 bits (80), Expect = 0.45
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYL 84
C+ C KP RS HCS C +C L
Sbjct: 136 CSTCRIVKPARSKHCSICNRCVL 158
>gi|747900|emb|CAA88679| (Z48758) unknown [Saccharomyces cerevisiae]
Length = 264
Score = 35.6 bits (80), Expect = 0.45
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYL 84
C+ C KP RS HCS C +C L
Sbjct: 136 CSTCRIVKPARSKHCSICNRCVL 158
>gi|1175373|sp|Q09701|YA2A_SCHPO HYPOTHETICAL 72.5 KD PROTEIN C2F7.10 IN CHROMOSOME I
>gi|2130379|pir||S58154 hypothetical protein SPAC2F7.10
- fission yeast (Schizosaccharomyces pombe)
>gi|1052793|emb|CAA90497| (Z50142) unknown
[Schizosaccharomyces pombe]
Length = 642
Score = 33.6 bits (75), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 152 CNVCNTYKPPRSHHCSFCRKC 90
C C KPPRS+HC C++C
Sbjct: 402 CLKCFQVKPPRSYHCGACKRC 422
>gi|1363741|pir||S59392 probable membrane protein YLR246w - yeast (Saccharomyces
cerevisiae) >gi|662337 (U20865) Ylr246wp [Saccharomyces
cerevisiae]
Length = 359
Score = 33.6 bits (75), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYL 84
C C ++PPRS HCS C C +
Sbjct: 175 CPSCRIWRPPRSSHCSTCNVCVM 197
>gi|2342647 (U90653) DHHC-domain-containing cysteine-rich protein [Homo
sapiens]
Length = 217
Score = 33.2 bits (74), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 152 CNVCNTYKPPRSHHCSFCRKC 90
CN+CN RS HCS C KC
Sbjct: 136 CNLCNVDVSARSKHCSACNKC 156
>gi|3873647|emb|CAA94868| (Z71177) Similarity with 39.2kd yeast protein (Swiss Prot accession
number P42836) [Caenorhabditis elegans]
Length = 600
Score = 32.8 bits (73), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLK 81
C C KP R+ HCS C KC +K
Sbjct: 405 CYECGHIKPDRARHCSSCGKCCIK 428
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 32.1 bits (71), Expect = 5.1
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 738 NHFILYTNLPINI*HIKYFYLLFYIYDSKTFFIKNIDSKGSIKXHIYIYFK*NIRYFFK* 559
N +ILY I ++ Y+++ FY +K + N ++K ++ + YF Y++K
Sbjct: 453 NKWILYN---IYTYYLYYYHIKFYNLYNKGIILNNNNNKYNVIYFLINYFNLFSNYYYKI 509
Query: 558 YIIFHISTNHNVCF----FIFSNYNPTCLKEILF 469
Y + N N F FI N+N + LF
Sbjct: 510 YNNNYNFINSNYYFKKMNFILKNFNNIQILNKLF 543
>gi|3875664|emb|CAB05476| (Z83104) predicted using Genefinder [Caenorhabditis elegans]
Length = 295
Score = 31.7 bits (70), Expect = 6.7
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 152 CNVCNTYKPPRSHHCSFCRKCYLK 81
C+ C++ P R+HHC C C L+
Sbjct: 105 CHSCHSMSPLRAHHCPVCDVCILR 128
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127978513
Number of Sequences: 369800
Number of extensions: 2235923
Number of successful extensions: 4572
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4507
Number of HSP's gapped (non-prelim): 66
length of query: 277
length of database: 113023754
effective HSP length: 54
effective length of query: 222
effective length of database: 93054554
effective search space: 20658110988
effective search space used: 20658110988
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)