BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-9R
(821 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|464621|sp|P34091|RL6_MESCR 60S RIBOSOMAL PROTEIN L6 (YL16-LIK... 62 4e-09
gi|218511|dbj|BAA01078| (D10226) ribosomal protein YL16 [Sacchar... 58 9e-08
gi|417576|sp|Q02326|R16A_YEAST 60S RIBOSOMAL PROTEIN YL16A >gi|3... 57 2e-07
gi|1346942|sp|P05739|R16B_YEAST 60S RIBOSOMAL PROTEIN YL16B >gi|... 55 6e-07
gi|140035|sp|P20197|Y32K_SSV1 HYPOTHETICAL 31.7 KD PROTEIN (ORF ... 34 1.7
gi|4164398|emb|CAA22846| (AL035248) serine threonine-protein kin... 31 8.6
>gi|464621|sp|P34091|RL6_MESCR 60S RIBOSOMAL PROTEIN L6 (YL16-LIKE) >gi|280374|pir||S28586
ribosomal protein ML16 - common ice plant
>gi|19539|emb|CAA49175| (X69378) ribosomal protein YL16
[Mesembryanthemum crystallinum]
Length = 234
Score = 62.5 bits (149), Expect = 4e-09
Identities = 33/105 (31%), Positives = 59/105 (55%), Gaps = 6/105 (5%)
Query: 565 YYTADDIPAFAEKLLELHKPAPIELRTDLVQGNVVVVLEGEYASYRVVYLSRTEDNKALC 386
+Y ADD+ + L+ KP P +LR + G V+++L G + RVV+L + L
Sbjct: 65 FYPADDVK---KPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLV 121
Query: 385 MGLPSINGIGLFEIDERFLLRTSIVLDI------RLDKKYRAKESKRSFKK 251
G +NG+ L +++ +++ TS +DI + D KY K++++ KK
Sbjct: 122 TGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKK 172
>gi|218511|dbj|BAA01078| (D10226) ribosomal protein YL16 [Saccharomyces cerevisiae]
Length = 176
Score = 57.8 bits (137), Expect = 9e-08
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 8/107 (7%)
Query: 565 YYTADDIPAFAEKLLELHKPAPIELRTDLVQGNVVVVLEGEYASYRVVYLSRTEDNKALC 386
+Y ++D+ A +K + +P +LR LV G V+++L G + RVVYL EDN L
Sbjct: 9 WYPSEDVAA-PKKTRKAVRPQ--KLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLV 65
Query: 385 MGLPSINGIGLFEIDERFLLRTSIVLDI------RLDKKYRAKE--SKRSFKKFN 245
GL +NG+ L ++ R+++ TS + + + + +Y AKE +K+ K+ N
Sbjct: 66 TGLFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN 120
>gi|417576|sp|Q02326|R16A_YEAST 60S RIBOSOMAL PROTEIN YL16A >gi|322960|pir||S28944 ribosomal
protein L6.e.A, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|218509|dbj|BAA01077| (D10225) ribosomal
protein YL16 [Saccharomyces cerevisiae]
>gi|914877|emb|CAA86505| (Z46373) YL16a gene, len: 176,
CAI: 0.64, R16A_YEAST Q02326 60S ribosomal protein YL16A
[Saccharomyces cerevisiae]
Length = 176
Score = 57.0 bits (135), Expect = 2e-07
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 565 YYTADDIPAFAEKLLELHKPA-PIELRTDLVQGNVVVVLEGEYASYRVVYLSRTEDNKAL 389
+Y ++D+ A L + K A P +LR LV G V+++L G + RVVYL EDN L
Sbjct: 9 WYPSEDVAA----LKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLL 64
Query: 388 CMGLPSINGIGLFEIDERFLLRTSIVLDI------RLDKKYRAKE--SKRSFKKFN 245
G +NG+ L ++ R+++ TS + + + + +Y AKE +K+ K+ N
Sbjct: 65 ISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN 120
>gi|1346942|sp|P05739|R16B_YEAST 60S RIBOSOMAL PROTEIN YL16B >gi|1084503|pir||S55970 ribosomal
protein L6.e.B, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|717063 (U22382) Rpl16bp: 60S ribosomal
protein YL16B [Saccharomyces cerevisiae]
Length = 176
Score = 55.0 bits (130), Expect = 6e-07
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 8/107 (7%)
Query: 565 YYTADDIPAFAEKLLELHKPAPIELRTDLVQGNVVVVLEGEYASYRVVYLSRTEDNKALC 386
+Y ++D+ A +K + +P +LR LV G V+++L G + RVVYL EDN L
Sbjct: 9 WYPSEDVAA-PKKTRKAVRPQ--KLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLV 65
Query: 385 MGLPSINGIGLFEIDERFLLRTSIVLDI------RLDKKYRAKE--SKRSFKKFN 245
G +NG+ L ++ R+++ TS + + + + +Y AKE +K+ K+ N
Sbjct: 66 TGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN 120
>gi|140035|sp|P20197|Y32K_SSV1 HYPOTHETICAL 31.7 KD PROTEIN (ORF A-291) >gi|76719|pir||S03230
hypothetical protein A-291 - Sulfolobus particle SSV1
>gi|46723|emb|CAA30198| (X07234) ORF A-291 [Sulfolobus
virus 1]
Length = 291
Score = 33.6 bits (75), Expect = 1.7
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 402 SSVLDKYTTLYDAYSPSRTTTTLPCTRSVLNSIGAGLCNSNNFSANAGISS 554
S+V YTTLY +++ ++ T T+ T N G +SN FS + +SS
Sbjct: 133 STVFYSYTTLYSSFAGTQLTITISYTG---NGFGVQFSDSNGFSHSVSVSS 180
>gi|4164398|emb|CAA22846| (AL035248) serine threonine-protein kinase [Schizosaccharomyces
pombe]
Length = 1072
Score = 31.3 bits (69), Expect = 8.6
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 327 SKNLSSISKRPIPLIDGNPMHNALLS 404
+K L SI K+PIPL+D NP+ + +S
Sbjct: 495 TKTLPSIGKKPIPLLDPNPISSTPIS 520
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117569242
Number of Sequences: 369800
Number of extensions: 2094319
Number of successful extensions: 6118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6113
Number of HSP's gapped (non-prelim): 6
length of query: 273
length of database: 113,023,754
effective HSP length: 54
effective length of query: 219
effective length of database: 93054554
effective search space: 20378947326
effective search space used: 20378947326
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)