BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 13VII-9F
         (893 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2496852|sp|Q11102|YL17_CAEEL HYPOTHETICAL 131.5 KD PROTEIN C0...    34  1.9
gi|294169 (M60807) merozoite surface antigen 1 [Plasmodium vivax]      32  4.2
gi|102381|pir||A39401 merozoite surface antigen 1 precursor - Pl...    32  4.2
gi|4314386|gb|AAD15596| (AC006232) putative rac GTPase activatin...    32  7.3


>gi|2496852|sp|Q11102|YL17_CAEEL HYPOTHETICAL 131.5 KD PROTEIN C02F12.7 IN CHROMOSOME X >gi|1109896
           (U41545) coded for by C. elegans cDNA yk4b2.5; coded for
           by C. elegans cDNA CEESN67F; coded for by C. elegans
           cDNA yk94h12.5; coded for by C. elegans cDNA CEESD93F;
           coded for by C. elegans cDNA CEESG57F; coded for by C.
           elegans cDNA yk4b2.3;...
           Length = 1130
           
 Score = 33.6 bits (75), Expect = 1.9
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 340 DNLSSNLKSQNMNREKIKVELTYFIEKIRELLGSSDDDLKNELSQLLTLLNTSRS 504
           DNL   L+S+N N E +K E+    EKI       D +L+  ++Q L + N+S+S
Sbjct: 694 DNLLEELESKNKNIEHLKQEIAQLNEKISTKETEKDSELEKTIAQ-LEIDNSSKS 747



>gi|294169 (M60807) merozoite surface antigen 1 [Plasmodium vivax]
            Length = 1726
            
 Score = 32.5 bits (72), Expect = 4.2
 Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 5/66 (7%)

Query: 319  NILSMRIDNLSSNLKSQNMNREKIKVELTYFIEKIRELLGSSDD-----DLKNELSQLLT 483
            N L   I+ L   L+    +  K K++L  F++K  ++  S D       LKN+L +   
Sbjct: 1018 NALGKEIEELKKKLQVSLDHYGKYKLKLERFLKKKNKISNSKDQIKKLTSLKNKLERRQN 1077

Query: 484  LLNTSRSIFSN 516
            LLN   S+  N
Sbjct: 1078 LLNNPTSVLKN 1088



>gi|102381|pir||A39401 merozoite surface antigen 1 precursor - Plasmodium vivax
            Length = 1726
            
 Score = 32.5 bits (72), Expect = 4.2
 Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 5/66 (7%)

Query: 319  NILSMRIDNLSSNLKSQNMNREKIKVELTYFIEKIRELLGSSDD-----DLKNELSQLLT 483
            N L   I+ L   L+    +  K K++L  F++K  ++  S D       LKN+L +   
Sbjct: 1018 NALGKEIEELKKKLQVSLDHYGKYKLKLERFLKKKNKISNSKDQIKKLTSLKNKLERRQN 1077

Query: 484  LLNTSRSIFSN 516
            LLN   S+  N
Sbjct: 1078 LLNNPTSVLKN 1088



>gi|4314386|gb|AAD15596| (AC006232) putative rac GTPase activating protein [Arabidopsis
           thaliana]
           Length = 368
           
 Score = 31.7 bits (70), Expect = 7.3
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 322 ILSMRIDNLSSNLKSQNMNREKIKVELT-YFIEKIRELLGSSDDDLKNELSQLLTLL 489
           I +  +D   +  ++++ N E+   E+  Y +E++ E  G   DDL NE S+ +TLL
Sbjct: 292 IATSNVDPCDNRSEAEDGNVEEYNQEVEIYVLEEVEEEEGEDVDDLDNEESERITLL 348


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109941219
Number of Sequences: 368476
Number of extensions: 1571797
Number of successful extensions: 4128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4127
Number of HSP's gapped (non-prelim): 6
length of query: 297
length of database: 112640273
effective HSP length: 54
effective length of query: 243
effective length of database: 92742569
effective search space: 22536444267
effective search space used: 22536444267
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)