BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-5R
(695 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1173219|sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24)... 42 0.005
gi|3355488 (AC004218) putative ribosomal protein S15a [Arabidops... 41 0.011
gi|133793|sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB8... 41 0.011
gi|2130985|emb|CAA42600| (X59984) r-protein BnS15a [Brassica napus] 41 0.011
gi|1173218|sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A >gi|4... 41 0.011
gi|3758866|emb|CAB11151| (Z98551) predicted using hexExon; MAL3P... 39 0.024
gi|1173217|sp|P46792|RS1A_AGABI 40S RIBOSOMAL PROTEIN S15A >gi|8... 39 0.042
gi|107615|pir||S22051 ribosomal protein S15a.e - human >gi|36142... 38 0.055
gi|1173220|sp|P39027|RS1A_HUMAN 40S RIBOSOMAL PROTEIN S15A >gi|6... 38 0.055
gi|4506689|oth|NP_001010|PRPS15A ribosomal protein S15a >gi|1082... 38 0.055
gi|2429452 (AF025460) strong similarity to the S8P family of rib... 38 0.055
gi|3687245 (AC005169) putative ribosomal protein [Arabidopsis th... 38 0.094
gi|417715|sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24) ... 37 0.16
gi|1710747|sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24)... 37 0.16
gi|2119072|pir||JC4713 ribosomal protein S24 - sea urchin (Parac... 37 0.16
gi|1350954|sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A >gi|4... 36 0.21
gi|2281972|emb|CAB10850| (Z98056) 40s ribosomal protein s15 or s... 35 0.47
gi|464711|sp|P33953|RS1A_KLUMA 40S RIBOSOMAL PROTEIN S15A (YS24)... 34 1.1
gi|133884|sp|P04648|RS22_YEAST 40S RIBOSOMAL PROTEIN S22 (YS24) ... 34 1.1
gi|1071974|pir||S51385 ribosomal protein S15a.e.c12 - yeast (Sac... 34 1.1
gi|134020|sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8 >gi|70917... 33 2.4
gi|2500419|sp|P56015|RS8_HELPY 30S RIBOSOMAL PROTEIN S8 >gi|2314... 33 2.4
gi|134016|sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8 (HMAS8) (... 32 3.1
gi|1710778|sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P >gi|211... 32 4.1
gi|4512418|dbj|BAA75285| (AB017508) rpsH homologue (identity of ... 32 4.1
gi|3914919|sp|O28369|RS8_ARCFU 30S RIBOSOMAL PROTEIN S8P >gi|264... 32 5.4
gi|3258195|dbj|BAA30878| (AP000007) 130aa long hypothetical 30S ... 31 7.0
gi|3122829|sp|O32997|RS8_MYCLE 30S RIBOSOMAL PROTEIN S8 >gi|2344... 31 7.0
>gi|1173219|sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|881426 (U27539) 40S ribosomal
protein S24 [Dictyostelium discoideum]
Length = 130
Score = 41.8 bits (96), Expect = 0.005
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FGH+++T+S G++ E +TGGK+LG+FY
Sbjct: 97 RQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130
>gi|3355488 (AC004218) putative ribosomal protein S15a [Arabidopsis thaliana]
Length = 136
Score = 40.6 bits (93), Expect = 0.011
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + N GGK+LG+FY
Sbjct: 103 RQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
>gi|133793|sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB8) >gi|99825|pir||S20945 ribosomal
protein S15a - rape >gi|17863|emb|CAA42599| (X59983)
r-protein BnS15a [Brassica napus]
Length = 130
Score = 40.6 bits (93), Expect = 0.011
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + N GGK+LG+FY
Sbjct: 97 RQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>gi|2130985|emb|CAA42600| (X59984) r-protein BnS15a [Brassica napus]
Length = 130
Score = 40.6 bits (93), Expect = 0.011
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + N GGK+LG+FY
Sbjct: 97 RQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>gi|1173218|sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A >gi|440824 (L27461) ribosomal protein
S15 [Arabidopsis thaliana] >gi|2150130 (AF001412)
cytoplasmic ribosomal protein S15a [Arabidopsis
thaliana]
Length = 130
Score = 40.6 bits (93), Expect = 0.011
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + N GGK+LG+FY
Sbjct: 97 RQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>gi|3758866|emb|CAB11151| (Z98551) predicted using hexExon; MAL3P6.30 (PFC0735w), 40S
Ribosomal protein S15A, len: 131 aa; Similarity to 40S
ribosomal protein S15A. H.sapiens 40S ribosomal protein
S15A (SW:RS1A_HUMAN) BLAST Score: 505, sum P(1) =
1.3e...
Length = 130
Score = 39.5 bits (90), Expect = 0.024
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FGHLI+T+ G++ E + +TGGK+LG+F+
Sbjct: 97 RLFGHLILTTPYGIMDHEEARRKHTGGKVLGFFF 130
>gi|1173217|sp|P46792|RS1A_AGABI 40S RIBOSOMAL PROTEIN S15A >gi|895693|emb|CAA55942| (X79405)
ribosomal protein S15a [Agaricus bisporus]
>gi|1580937|prf||2116270A ribosomal protein S15a
[Agaricus bisporus]
Length = 130
Score = 38.7 bits (88), Expect = 0.042
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
RG G +++T+S G++ E + N GGK+LGY Y
Sbjct: 97 RGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130
>gi|107615|pir||S22051 ribosomal protein S15a.e - human >gi|36142|emb|CAA44568| (X62691)
ribosomal protein homologous to yeast S24 [Homo
sapiens]
Length = 129
Score = 38.3 bits (87), Expect = 0.055
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG +++T+S G++ E + +TGGKILG+F+
Sbjct: 96 RQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 129
>gi|1173220|sp|P39027|RS1A_HUMAN 40S RIBOSOMAL PROTEIN S15A >gi|627959|pir||JC2234 ribosomal protein
S15a - rat >gi|495273|emb|CAA54918| (X77953) ribosomal
protein S15a [Rattus norvegicus]
Length = 130
Score = 38.3 bits (87), Expect = 0.055
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG +++T+S G++ E + +TGGKILG+F+
Sbjct: 97 RQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
>gi|4506689|oth|NP_001010|PRPS15A ribosomal protein S15a >gi|1082767|pir||S52339 ribosomal protein
S15a - human >gi|666047|emb|CAA59127| (X84407) ribosomal
protein S15a [Homo sapiens]
Length = 130
Score = 38.3 bits (87), Expect = 0.055
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG +++T+S G++ E + +TGGKILG+F+
Sbjct: 97 RQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
>gi|2429452 (AF025460) strong similarity to the S8P family of ribosomal
proteins [Caenorhabditis elegans]
Length = 130
Score = 38.3 bits (87), Expect = 0.055
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG+LI+T+S G++ E + + GGKILG+F+
Sbjct: 97 RQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
>gi|3687245 (AC005169) putative ribosomal protein [Arabidopsis thaliana]
Length = 129
Score = 37.5 bits (85), Expect = 0.094
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R +G++++T+ G++ E I+ N GG++LG+F+
Sbjct: 96 RQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129
>gi|417715|sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24) >gi|283751|pir||A43907 ribosomal
protein S15a.e - sea urchin (Strongylocentrotus
purpuratus) >gi|241027|bbs|72598 (S72597)
SpS24=ribosomal protein S24 [Strongylocentrotus
purpuratus=sea urchins, Peptide, 130 aa]
[Strongylocentrotus purpuratus]
Length = 130
Score = 36.7 bits (83), Expect = 0.16
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + + GGKILG+F+
Sbjct: 97 RQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
>gi|1710747|sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|1166457|emb|CAA64564| (X95268)
ribosomal protein S24 [Paracentrotus lividus]
Length = 130
Score = 36.7 bits (83), Expect = 0.16
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + + GGKILG+F+
Sbjct: 97 RQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
>gi|2119072|pir||JC4713 ribosomal protein S24 - sea urchin (Paracentrotus lividus)
Length = 130
Score = 36.7 bits (83), Expect = 0.16
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + + GGKILG+F+
Sbjct: 97 RQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
>gi|1350954|sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A >gi|422493|pir||S33498 ribosomal protein
DS15a - fruit fly (Drosophila melanogaster)
>gi|311606|emb|CAA79771| (Z21673) ribosomal protein 15a
(40S subunit) [Drosophila melanogaster]
Length = 130
Score = 36.4 bits (82), Expect = 0.21
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++++T+S G++ E + + GGKILG+F+
Sbjct: 97 RQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
>gi|2281972|emb|CAB10850| (Z98056) 40s ribosomal protein s15 or s22 [Schizosaccharomyces
pombe] >gi|2414597|emb|CAB16574| (Z99295) 40s ribosomal
protein s15a [Schizosaccharomyces pombe]
>gi|3219307|dbj|BAA28848| (AB015353) ribosomal protein
S22 homolog [Schizosaccharomyces pombe]
Length = 130
Score = 35.2 bits (79), Expect = 0.47
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R G +++T+S+G++ E + GGKILG+FY
Sbjct: 97 RQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130
>gi|464711|sp|P33953|RS1A_KLUMA 40S RIBOSOMAL PROTEIN S15A (YS24) >gi|320167|pir||S30003 ribosomal
protein S15a.e - yeast (Kluyveromyces marxianus)
>gi|263484|bbs|122433 (S53434) S24-1=ribosomal protein
[Kluyveromyces marxianus, Peptide, 130 aa]
[Kluyveromyces marxianus]
Length = 130
Score = 34.0 bits (76), Expect = 1.1
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++I+T+S G++ E + + GKILG+ Y
Sbjct: 97 RQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
>gi|133884|sp|P04648|RS22_YEAST 40S RIBOSOMAL PROTEIN S22 (YS24) (YP58) >gi|70916|pir||R4BY24
ribosomal protein S15a.e.c10 - yeast (Saccharomyces
cerevisiae) >gi|4407|emb|CAA25998| (X01962) ribosomal
protein S24 [Saccharomyces cerevisiae]
>gi|547605|emb|CAA54770| (X77688) ribosomal protein S24
[Saccharomyces cerevisiae] >gi|1008400|emb|CAA89485|
(Z49465) ORF YJL190c [Saccharomyces cerevisiae]
Length = 130
Score = 34.0 bits (76), Expect = 1.1
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++I+T+S G++ E + + GKILG+ Y
Sbjct: 97 RQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
>gi|1071974|pir||S51385 ribosomal protein S15a.e.c12 - yeast (Saccharomyces cerevisiae)
>gi|609410 (U19103) Rps24bp: 40S ribosomal protein S22
[Saccharomyces cerevisiae]
Length = 130
Score = 34.0 bits (76), Expect = 1.1
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG++I+T+S G++ E + + GKILG+ Y
Sbjct: 97 RQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
>gi|134020|sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8 >gi|70917|pir||R3MX8 ribosomal protein S8
- Methanococcus vannielii >gi|44763|emb|CAA34695|
(X16720) rpS8 (AA 1-130) [Methanococcus vannielii]
Length = 130
Score = 32.8 bits (73), Expect = 2.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
+GFG LIV++ KGL+ E GG+++ Y Y
Sbjct: 97 KGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130
>gi|2500419|sp|P56015|RS8_HELPY 30S RIBOSOMAL PROTEIN S8 >gi|2314469|gb|AAD08346.1| (AE000633)
ribosomal protein S8 (rps8) [Helicobacter pylori 26695]
>gi|4155835 (AE001547) putative 30S RIBOSOMAL PROTEIN S8
[Helicobacter pylori J99]
Length = 131
Score = 32.8 bits (73), Expect = 2.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 691 GFGHLIVTSSKGLIXXRECIQHNTGGKIL 605
G+G ++V++SKG+I E + N GG++L
Sbjct: 99 GYGVIVVSTSKGVITNEEAYRQNVGGEVL 127
>gi|134016|sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8 (HMAS8) (HS16) >gi|81010|pir||S16537
ribosomal protein S8 - Haloarcula marismortui
>gi|48863|emb|CAA41286| (X58395) ribosomal protein
[Haloarcula marismortui] >gi|228186|prf||1718307C
ribosomal protein S8 [Haloarcula marismortui]
Length = 130
Score = 32.5 bits (72), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R +G L+VT+S G++ E + GG+++ Y Y
Sbjct: 97 RDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130
>gi|1710778|sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P >gi|2119073|pir||F64358 ribosomal protein
S8 - Methanococcus jannaschii >gi|1591172 (U67497) SSU
ribosomal protein S8P (rpsH) [Methanococcus jannaschii]
Length = 130
Score = 32.1 bits (71), Expect = 4.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG LIV++++G++ E + GG++L Y Y
Sbjct: 97 RDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130
>gi|4512418|dbj|BAA75285| (AB017508) rpsH homologue (identity of 82% to B. subtilis )
[Bacillus halodurans]
Length = 132
Score = 32.1 bits (71), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 691 GFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
G G IV++SKG++ +E Q GG++L Y +
Sbjct: 100 GLGIAIVSTSKGVMTDKEARQQQVGGEVLAYVW 132
>gi|3914919|sp|O28369|RS8_ARCFU 30S RIBOSOMAL PROTEIN S8P >gi|2648631 (AE000971) SSU ribosomal
protein S8P (rps8E) [Archaeoglobus fulgidus]
Length = 131
Score = 31.7 bits (70), Expect = 5.4
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 694 RGFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
R FG LIV+++KG++ ++ + GG +L Y Y
Sbjct: 98 RDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 131
>gi|3258195|dbj|BAA30878| (AP000007) 130aa long hypothetical 30S ribosomal protein S8
[Pyrococcus horikoshii]
Length = 130
Score = 31.3 bits (69), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 688 FGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
FG LIV++S+G++ +E GG+++ Y Y
Sbjct: 99 FGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130
>gi|3122829|sp|O32997|RS8_MYCLE 30S RIBOSOMAL PROTEIN S8 >gi|2344848|emb|CAB11450| (Z98756)
ribosomal protein S8 [Mycobacterium leprae]
Length = 132
Score = 31.3 bits (69), Expect = 7.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 691 GFGHLIVTSSKGLIXXRECIQHNTGGKILGYFY 593
G G +I+++S GL+ R+ + GG++L Y +
Sbjct: 100 GLGVVIISTSSGLLTDRQAARQGVGGEVLAYVW 132
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55795751
Number of Sequences: 369800
Number of extensions: 506640
Number of successful extensions: 460
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 28
length of query: 231
length of database: 113,023,754
effective HSP length: 53
effective length of query: 178
effective length of database: 93424354
effective search space: 16629535012
effective search space used: 16629535012
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)