BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 13VII-4F
         (294 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|82753|pir||S07183 hypothetical protein 3 - maize mitochondrio...    30  5.5
gi|118887|sp|P10582|DPOM_MAIZE DNA POLYMERASE (S-1 DNA ORF 3)          29  9.5


>gi|82753|pir||S07183 hypothetical protein 3 - maize mitochondrion plasmid S-1
           Length = 917
           
 Score = 29.7 bits (65), Expect = 5.5
 Identities = 13/29 (44%), Positives = 18/29 (61%)

Query: 64  LFKVLLVSGKGLDLFRRFAVKCDDNNPVY 150
           + KVL +S   L +FRR   K DD+N +Y
Sbjct: 424 ILKVLTISALALKIFRRVYYKDDDDNRIY 452



>gi|118887|sp|P10582|DPOM_MAIZE DNA POLYMERASE (S-1 DNA ORF 3)
           Length = 929
           
 Score = 29.0 bits (63), Expect = 9.5
 Identities = 13/29 (44%), Positives = 18/29 (61%)

Query: 64  LFKVLLVSGKGLDLFRRFAVKCDDNNPVY 150
           + KVL +S   L +FRR   K DD+N +Y
Sbjct: 436 ILKVLTISALALKIFRRVYYKDDDDNWIY 464


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47012142
Number of Sequences: 368476
Number of extensions: 670911
Number of successful extensions: 1082
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 2
length of query: 98
length of database: 112640273
effective HSP length: 50
effective length of query: 47
effective length of database: 94216473
effective search space: 4428174231
effective search space used: 4428174231
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 63 (29.0 bits)