BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-3R
(738 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1078494|pir||S54531 hypothetical protein YDR235w - yeast (Sac... 38 0.059
gi|3845109 (AE001376) Ser/Thr protein kinase [Plasmodium falcipa... 36 0.30
gi|3758840|emb|CAB11125| (Z98551) predicted using hexExon; MAL3P... 35 0.67
gi|2226422|emb|CAB10088| (Z97204) hypothetical protein [Schizosa... 35 0.67
gi|3915978|sp|Q02354|YD49_YEAST HYPOTHETICAL 52.4 KD PROTEIN IN ... 34 1.5
gi|2315362 (AF016441) contains similarity to multiple TPR domain... 34 1.5
gi|3880072|emb|CAB03395| (Z81128) predicted using Genefinder; Si... 33 2.6
gi|3845253 (AE001412) ATP-dept. acyl-CoA synthetase (TP) [Plasmo... 32 4.4
gi|3845262 (AE001414) BRAHMA ortholog (DNA helicase superfamily ... 32 4.4
gi|3764022|emb|CAA15615| (AL008970) predicted using hexExon; MAL... 32 4.4
gi|1707051 (U80447) strong similarity to protein-tyrosine phosph... 32 4.4
gi|3845280 (AE001418) hypothetical protein [Plasmodium falciparum] 32 4.4
gi|1209855 (U45425) repeat motif-containing gene [Borrelia burgd... 32 5.8
gi|3845246 (AE001410) predicted coiled-coil domain protein [Plas... 31 7.6
gi|4493974|emb|CAB39033| (AL034559) predicted using hexExon; MAL... 31 7.6
gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P... 31 7.6
gi|3560492 (AF023853) unknown [Borrelia burgdorferi] 31 7.6
gi|170992 (M95396) open reading frame found c-terminal of ADA2 t... 31 10.0
gi|1176074|sp|P46949|YG4A_YEAST HYPOTHETICAL 90.8 KD PROTEIN IN ... 31 10.0
gi|4314389|gb|AAD15599| (AC006232) putative transcription factor... 31 10.0
gi|1151158 (U43145) repeat organellar protein [Plasmodium chabaudi] 31 10.0
>gi|1078494|pir||S54531 hypothetical protein YDR235w - yeast (Saccharomyces cerevisiae)
>gi|817821|emb|CAA89721| (Z49701) unknown [Saccharomyces
cerevisiae] >gi|2444426 (AF020682) U1 snRNP protein
[Saccharomyces cerevisiae]
Length = 544
Score = 38.3 bits (87), Expect = 0.059
Identities = 21/77 (27%), Positives = 34/77 (43%), Gaps = 1/77 (1%)
Query: 532 PXXKYVVLALIEEKRKNFEQRXTPHPTXXPXYIDYAIFEEKCGKMXNXXNIFXRGIDD-N 356
P K L++ R + P YID+A+ E K G + IF RG+ N
Sbjct: 43 PICKSTEPQLLKLIRCTYSSMLNEFPYLENYYIDFALLEYKLGNVSMSHKIFQRGLQAFN 102
Query: 355 YESIYLWXKYIEYMMKMV 302
S+ LW Y+++ ++
Sbjct: 103 QRSLLLWTSYLKFCNNVI 120
>gi|3845109 (AE001376) Ser/Thr protein kinase [Plasmodium falciparum]
Length = 2485
Score = 36.0 bits (81), Expect = 0.30
Identities = 18/53 (33%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Query: 262 NKKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNIE-DNKSIEIDNK 104
N K+ N DK+ ++ + D KNI+ D+ ++K+D KNI ++K+I ++K
Sbjct: 83 NLKDGNIILDDKNRKVDDINITGDDKNIKVDDKNIKVDDKNITGEDKNITGEDK 136
>gi|3758840|emb|CAB11125| (Z98551) predicted using hexExon; MAL3P6.26 (PFC0835c),
Hypothetical protein, len: 379 aa [Plasmodium
falciparum]
Length = 378
Score = 34.8 bits (78), Expect = 0.67
Identities = 39/140 (27%), Positives = 61/140 (42%), Gaps = 6/140 (4%)
Query: 514 VLALIEEKRKNFEQRXTPHPTXXPXYIDYAIFEEKC---GKMXNXXNIFXRGIDDNYESI 344
VL + ++ +KN +R P+ I +E G ++ G N+ +
Sbjct: 134 VLCVYKKSQKNQVERKFPNLYKYTKLIKKKELKEMYEIKGDSSEVTDLVLSGKILNFFNT 193
Query: 343 YLWXKYIEYMMKMVDDKDSKEXXXX*YNKKEQNTSSQDKDCITKNVKLENDXKNIQEDNN 164
Y KYI YM E +NKK+ +N+K +ND N + D+N
Sbjct: 194 Y--DKYINYMCITDIPLHEYEDKSNDHNKKKD-----------ENIKKKNDDNNKKNDDN 240
Query: 163 SVKID--XKNIEDNKSIEIDN-KIEK 95
+ K D KNI+DN + +N K EK
Sbjct: 241 NKKNDDNNKNIDDNNKKKEENVKTEK 266
>gi|2226422|emb|CAB10088| (Z97204) hypothetical protein [Schizosaccharomyces pombe]
Length = 674
Score = 34.8 bits (78), Expect = 0.67
Identities = 30/104 (28%), Positives = 49/104 (46%), Gaps = 6/104 (5%)
Query: 619 KMKXKDNEDI-IKAHNIIXEAKEYKQPLNIPXXKYVV-LALIEE----KRKNFEQRXTPH 458
++K K+ I I A ++ EA E + +P + L ++E KRK FE +
Sbjct: 7 RVKNKNPAPIQISAEQLLREAVERQDVAFVPPKINITDLEELQEFQGRKRKEFEDAIRRN 66
Query: 457 PTXXPXYIDYAIFEEKCGKMXNXXNIFXRGIDDNYESIYLWXKYIEYMMK 308
++ Y +E + ++F R +D + I LW KYIE MK
Sbjct: 67 RLAMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMK 116
>gi|3915978|sp|Q02354|YD49_YEAST HYPOTHETICAL 52.4 KD PROTEIN IN ADA2-RPS18A INTERGENIC REGION
>gi|2131499|pir||S69728 hypothetical protein YDR449c -
yeast (Saccharomyces cerevisiae) >gi|927708 (U33007)
Ydr449cp; CAI: 0.18 [Saccharomyces cerevisiae]
Length = 440
Score = 33.6 bits (75), Expect = 1.5
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 481 FEQRXTPHPTXXPXYIDYAIFE-EKCGKMXNXXNIFXRGIDDNYESIYLWXKYIEYMMKM 305
+ Q HPT +I A +E E + NIF G+ N + LW +Y+++ +
Sbjct: 133 YNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFELNF 192
Query: 304 VDDKDSKEXXXX*YNKKEQNTSSQDKDCITKNVKLENDXKN 182
+ ++ N++EQ Q++ KN + ++ K+
Sbjct: 193 ITKLINRRKVMGLINEREQELDMQNEQ---KNNQAPDEEKS 230
>gi|2315362 (AF016441) contains similarity to multiple TPR domains
[Caenorhabditis elegans]
Length = 761
Score = 33.6 bits (75), Expect = 1.5
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 502 IEEKRKNFEQRXTPHPTXXPXYIDYAIFEEKCGKMXNXXNIFXRGIDDNYESIYLWXKYI 323
I+ R FE+ ++ YA E +C ++ + N+F R I ++ W KY
Sbjct: 119 IQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKY- 177
Query: 322 EYMMKMVDD 296
YM +++++
Sbjct: 178 SYMEEVIEN 186
>gi|3880072|emb|CAB03395| (Z81128) predicted using Genefinder; Similarity to Mouse bright
gene (TR:Q62431) [Caenorhabditis elegans]
Length = 293
Score = 32.8 bits (73), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (57%)
Query: 265 YNKKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNKS 122
+N ++TSS D D K KLEND K +S++I K+ +++K+
Sbjct: 221 HNSGRESTSSNDSDIPAKRPKLENDVKT--NGASSMRISTKHSDNSKT 266
>gi|3845253 (AE001412) ATP-dept. acyl-CoA synthetase (TP) [Plasmodium falciparum]
Length = 888
Score = 32.1 bits (71), Expect = 4.4
Identities = 31/113 (27%), Positives = 52/113 (45%), Gaps = 7/113 (6%)
Query: 433 DYAIFEEKCGKMXNXXNIFXRGIDDNYESIYLWXKYIEYMMKMVDDKDSKEXXXX*YNKK 254
DYA F ++ NIF + + E K ++ +D++ +E Y +
Sbjct: 729 DYAFFIDQV------KNIFKKKLKGQKERTKRLQKKTSDEQEIKNDENDQEKSKKSYFSR 782
Query: 253 ---EQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNI----EDNKSIEIDNKIEK 95
++ + SQ+K+ T K K+ ++ N K KN +DN SI + NKIEK
Sbjct: 783 LSQKRKSRSQEKNKSTSQEK----NKSTSQEKNKSKSKEKNTSTLPQDNISIPVQNKIEK 838
>gi|3845262 (AE001414) BRAHMA ortholog (DNA helicase superfamily II)
[Plasmodium falciparum]
Length = 1997
Score = 32.1 bits (71), Expect = 4.4
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 337 WXKYIEYMM-KMVDDKDSK-----------EXXXX*YNKKEQNTSSQDKDCITKNVKLEN 194
+ +++EY+ K DK++K E NKKE+N ++ D + K E
Sbjct: 109 YLRHLEYLKRKKKKDKENKSKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMEN--KKEK 166
Query: 193 DXKNIQEDNNSVKIDXKNIEDNKSIEIDNKIEK***NRRNKD 68
+ KN ++D K + KN ++ K E++NK EK N+ KD
Sbjct: 167 NNKNEKDDEMENKKE-KNNKNEKDDEMENKKEK--NNKNEKD 205
Score = 31.7 bits (70), Expect = 5.8
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 262 NKKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNKSIEIDNKIEK***N 83
NKKE+N ++ D + K E + KN ++D K + KN ++ K E++NK EK N
Sbjct: 178 NKKEKNNKNEKDDEMEN--KKEKNNKNEKDDEMENKKE-KNNKNEKDDEMENKKEK--NN 232
Query: 82 RRNKD 68
+ KD
Sbjct: 233 KNEKD 237
Score = 31.7 bits (70), Expect = 5.8
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 262 NKKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNKSIEIDNKIEK***N 83
NKKE+N ++ D + K E + KN ++D K + KN ++ K E++NK EK N
Sbjct: 162 NKKEKNNKNEKDDEMEN--KKEKNNKNEKDDEMENKKE-KNNKNEKDDEMENKKEK--NN 216
Query: 82 RRNKD 68
+ KD
Sbjct: 217 KNEKD 221
>gi|3764022|emb|CAA15615| (AL008970) predicted using hexExon; MAL3P4.25 (PFC0440c), Helicase,
len: 2270 aa; Similarity to helicases. C.elegans helicase
(WP:F52B5.3) BLAST Score: 290, sum P(4) = 5.9e-31; 34% in
199 aa overlap. [Plasmodium falciparum]
Length = 2269
Score = 32.1 bits (71), Expect = 4.4
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 364 DDNYESIYLWXKYIEYMMKMVDDKDSKEXXXX*YNKKEQNTSSQDKDCITKNVKLENDXK 185
D Y Y + Y +Y DD D+ + N + ++ + D NVK+E+D
Sbjct: 1745 DQQYNKGYYYDDYDDY--DDYDDDDNNDDNNDNNNNNNDDNNNNNDDDYLSNVKVESDNN 1802
Query: 184 NIQEDN 167
N ++N
Sbjct: 1803 NTHQNN 1808
>gi|1707051 (U80447) strong similarity to protein-tyrosine phosphatases
[Caenorhabditis elegans]
Length = 518
Score = 32.1 bits (71), Expect = 4.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 259 KKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNKSIEIDNKIEK 95
KKE+ S D + K V E+D K + + + S K+ K +++ K E K+ K
Sbjct: 87 KKEKKKSEDDLLDVKKTVSKEDDKKKVDKKDGSKKLSKKKLKEEKK-EKSKKVNK 140
>gi|3845280 (AE001418) hypothetical protein [Plasmodium falciparum]
Length = 1817
Score = 32.1 bits (71), Expect = 4.4
Identities = 25/87 (28%), Positives = 44/87 (49%), Gaps = 4/87 (4%)
Query: 331 KYIEYMMKMVDDK----DSKEXXXX*YNKKEQNTSSQDKDCITKNVKLENDXKNIQEDNN 164
K + Y++ ++ D+ DS + YN+ +++ + DK+ N N+ KN +DNN
Sbjct: 241 KVLSYLINLLQDRHRIRDSTQMNVC-YNEMKKD-NDDDKNKHKDNNNNNNNNKNKHKDNN 298
Query: 163 SVKIDXKNIEDNKSIEIDNKIEK***NRRNK 71
K N +NK+ D+ I N +NK
Sbjct: 299 KNKHKDNNNNNNKNKHSDHLISNLYDNHQNK 329
>gi|1209855 (U45425) repeat motif-containing gene [Borrelia burgdorferi]
Length = 209
Score = 31.7 bits (70), Expect = 5.8
Identities = 15/45 (33%), Positives = 28/45 (61%)
Query: 229 KDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNKSIEIDNKIEK 95
KD ++K++N KN+Q+D +++ N+E N + +ID +EK
Sbjct: 121 KDISNLDIKIDNVEKNLQKDISNLDTKIDNVEKNLNAKIDT-VEK 164
>gi|3845246 (AE001410) predicted coiled-coil domain protein [Plasmodium
falciparum]
Length = 153
Score = 31.3 bits (69), Expect = 7.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 262 NKKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNKSIEIDNK 104
N ++ + D+D ITK + +E I+ N K + +E+ K+IE++ K
Sbjct: 66 NNMKEKCNHIDRDTITKEISIERLLHKIRNLENEKKFLLRFLENKKNIELEYK 118
>gi|4493974|emb|CAB39033| (AL034559) predicted using hexExon; MAL3P7.15 (PFC0930c),
Hypothetical protein, len: 1845 aa [Plasmodium
falciparum]
Length = 1844
Score = 31.3 bits (69), Expect = 7.6
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 259 KKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNI---EDNKSIEIDNK 104
KK +++++D D N + +D KNI +DNN+ I NI +DN + D +
Sbjct: 1485 KKGNDSTTKDYD---NNNNINDDKKNINDDNNNNNIYDNNINIYDDNNNFNDDGR 1536
>gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P6.11 (PFC0760c), Hypothetical
protein, len: 3395 aa [Plasmodium falciparum]
Length = 3394
Score = 31.3 bits (69), Expect = 7.6
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 298 DKDSKEXXXX*YNKKEQ---NTSSQDKDCITK-NVKLENDXKNIQEDNNSVKIDXKNIED 131
D D KE K E +T + D I K N+ +N+ NI +DNN+ I+ N D
Sbjct: 2823 DDDKKENEDIIQAKNENYPVSTHYDNNDDINKDNINNDNNNDNINDDNNNDNINNDNNND 2882
Query: 130 N 128
N
Sbjct: 2883 N 2883
>gi|3560492 (AF023853) unknown [Borrelia burgdorferi]
Length = 100
Score = 31.3 bits (69), Expect = 7.6
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 229 KDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNKSIEID 110
KD + ++K++N K Q+D +S+ I N+E N + +ID
Sbjct: 56 KDISSLDIKIDNVEKTYQKDISSLDIKIDNVEKNLNTKID 95
>gi|170992 (M95396) open reading frame found c-terminal of ADA2 that was
sequenced during the cloneing of ADA2. There is no
information available regarding its function.; putative
[Saccharomyces cerevisiae]
Length = 439
Score = 30.9 bits (68), Expect = 10.0
Identities = 23/105 (21%), Positives = 46/105 (42%), Gaps = 1/105 (0%)
Query: 496 EKRKNFEQRXTPHPTXXPXYIDYAIFE-EKCGKMXNXXNIFXRGIDDNYESIYLWXKYIE 320
+K N + PT +I A +E E + NIF G+ N + LW +Y++
Sbjct: 127 KKIHNIYNQLLSAPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVK 186
Query: 319 YMMKMVDDKDSKEXXXX*YNKKEQNTSSQDKDCITKNVKLENDXKN 182
+ + + ++ N++EQ Q++ KN + ++ K+
Sbjct: 187 FELNFITKLINRRKVMGLINEREQELDMQNEQ---KNNQAPDEEKS 229
>gi|1176074|sp|P46949|YG4A_YEAST HYPOTHETICAL 90.8 KD PROTEIN IN RRP41-SNG1 INTERGENIC REGION
>gi|1077120|pir||S53919 hypothetical protein YGR196c -
yeast (Saccharomyces cerevisiae)
>gi|791128|emb|CAA58019| (X82775) G7589 [Saccharomyces
cerevisiae] >gi|1323349|emb|CAA97222| (Z72981) ORF
YGR196c [Saccharomyces cerevisiae]
Length = 817
Score = 30.9 bits (68), Expect = 10.0
Identities = 17/66 (25%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Query: 301 DDKDSKEXXXX*YNKKEQNTSSQDKDCI--TKNVKLENDXKNIQEDNNSVKIDXKNIEDN 128
D++ S N++ + + D D + T+++K + +++ ++ I+ KN EDN
Sbjct: 356 DNRSSVSDKHADINRQSKQLDTTDDDALSYTESIKYSTNETEEEDNEDNESIEDKN-EDN 414
Query: 127 KSIEIDNK 104
+SIE +N+
Sbjct: 415 ESIEDENE 422
>gi|4314389|gb|AAD15599| (AC006232) putative transcription factor [Arabidopsis thaliana]
Length = 275
Score = 30.9 bits (68), Expect = 10.0
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 304 VDDKDSKEXXXX*YNKKEQNTSSQDKDCITKNVKLENDXKNIQEDNNSVKIDXKNIEDNK 125
+D++ + + E+ + ++D + + END +N +E+ N + D +N E+N
Sbjct: 153 IDEETKRNDEETENDNTEEENGNDEEDENGNDEEDENDDENTEENGNDEENDDENTEENG 212
Query: 124 SIEIDNK 104
+ E + K
Sbjct: 213 NDEENEK 219
>gi|1151158 (U43145) repeat organellar protein [Plasmodium chabaudi]
Length = 1939
Score = 30.9 bits (68), Expect = 10.0
Identities = 50/173 (28%), Positives = 84/173 (47%), Gaps = 33/173 (19%)
Query: 613 KXKDNEDIIKAHNIIXEAKEYKQPLNIPXXKYVVLALIEEKRKNFE-----QRXTPHPTX 449
K K+ +IK + I E K + I K +EE KN+E +R T
Sbjct: 1359 KIKEENLMIKFNENINEVTSLKNQIEIEKMK------LEELNKNYELLLAEKRETNMSIS 1412
Query: 448 XPX--YIDYAIFEEKCGKMXNXX-NIFXRGIDD-NYESIYLWXKYIEYMMKMV------- 302
++ I E+ K N N+ + DD N E K I Y+ +
Sbjct: 1413 NDDNKIVENNILEDTDSKQNNLNKNVEDKTGDDINCEKNNDQAKEISYLKDEIKKISMLY 1472
Query: 301 -DDKDSKEXXXX*YNKKEQNTSSQDKDCITKNVKLE------NDXKNIQEDNNSVKIDXK 143
++ + K Y++K +N +++ K+ +N K E N KNI+E N SVK + +
Sbjct: 1473 GEELNRKNS----YDEKVKNLTNELKELKIRNKKGEEAIAELNKLKNIKEKNKSVKQNDE 1528
Query: 142 NIEDN----------KSIEIDNKIEK 95
+ +N + + D+KI+K
Sbjct: 1529 SSSNNIITKDGDKTPEYVSNDDKIQK 1554
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83889445
Number of Sequences: 369800
Number of extensions: 1135822
Number of successful extensions: 3441
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3374
Number of HSP's gapped (non-prelim): 71
length of query: 246
length of database: 113023754
effective HSP length: 53
effective length of query: 192
effective length of database: 93424354
effective search space: 17937475968
effective search space used: 17937475968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)