BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-3F
(703 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3122986|sp|Q91854|TRCB_XENLA BETA-TRCP (BETA-TRANSDUCIN REPEA... 53 3e-06
gi|4165136 (AF101784) b-TRCP variant E3RS-IkappaB [Homo sapiens] 53 3e-06
gi|3183289|sp|P87053|YDJ5_SCHPO HYPOTHETICAL 67.1 KD TRP-ASP REP... 53 3e-06
gi|1490632 (U63921) beta-transducin repeat containing protein-2 ... 53 3e-06
gi|4502477|oth|NP_003930|PBTRC UNKNOWN >gi|2995194|emb|CAA74572|... 53 3e-06
gi|4008020 (AF099932) beta-TrCP protein E3RS-IkappaB [Mus muscul... 53 3e-06
gi|4140718|gb|AAD04181| (AF112979) beta-transducin repeat contai... 53 3e-06
gi|3327206|dbj|BAA31671| (AB014596) KIAA0696 protein [Homo sapiens] 53 3e-06
gi|1490634 (U63922) beta-transducin repeat containing protein-3 ... 53 3e-06
gi|3123171|sp|Q09990|YSS1_CAEEL HYPOTHETICAL 80.3 KD TRP-ASP REP... 52 6e-06
gi|1351791|sp|P25382|YCW2_YEAST HYPOTHETICAL 57.0 KD TRP-ASP REP... 51 7e-06
gi|3122851|sp|Q00659|SCOB_EMENI SULFUR METABOLITE REPRESSION CON... 51 1e-05
gi|2853610 (AF032878) Slimb [Drosophila melanogaster] 49 4e-05
gi|3766367|emb|CAA21419| (AL031907) trp-asp repeat containing pr... 46 2e-04
gi|3183124|sp|O14170|POP2_SCHPO WD-REPEAT PROTEIN POP2 >gi|23308... 44 0.001
gi|3122852|sp|Q01277|SCO2_NEUCR SULFUR CONTROLLER-2 (SCON2) >gi|... 43 0.003
gi|1705681|sp|P53699|CC4_CANAL CELL DIVISION CONTROL PROTEIN 4 >... 43 0.003
gi|3123159|sp|Q17963|YKY4_CAEEL HYPOTHETICAL 40.4 KD TRP-ASP REP... 41 0.006
gi|4028547 (AF093689) MEK kinase alpha [Dictyostelium discoideum] 41 0.008
gi|4494034|emb|CAB39129| (AL034560) predicted using hexExon; MAL... 41 0.008
gi|2494888|sp|Q27954|COPA_BOVIN COATOMER ALPHA SUBUNIT (ALPHA-CO... 41 0.008
gi|1351616|sp|Q09855|YAF1_SCHPO HYPOTHETICAL TRP-ASP REPEATS CON... 41 0.008
gi|1168815|sp|P07834|CC4_YEAST CELL DIVISION CONTROL PROTEIN 4 >... 41 0.011
gi|1705996|sp|P53621|COPA_HUMAN COATOMER ALPHA SUBUNIT (ALPHA-CO... 41 0.011
gi|559926|emb|CAA86341| (Z46255) cdc4, incomplete, len: 579, CAI... 41 0.011
gi|549752|sp|P36037|DOA1_YEAST DOA1 PROTEIN >gi|539311|pir||S380... 40 0.014
gi|549607|sp|P36130|YK16_YEAST HYPOTHETICAL 74.7 KD TRP-ASP REPE... 40 0.014
gi|3687833|gb|AAC62236| (AF069737) notchless [Xenopus laevis] 40 0.019
gi|3367534 (AC004392) Strong similarity to coatamer alpha subuni... 40 0.019
gi|4567286|gb|AAD23699|AC006841_27 (AC006841) putative coatomer ... 40 0.019
gi|2677836 (AF020788) SEL-10 [Caenorhabditis elegans] 39 0.025
gi|3915881|sp|Q93794|SE10_CAEEL SEL-10 PROTEIN >gi|3877677|emb|C... 39 0.025
gi|3676167|emb|CAA09492| (AJ011114) coatomer alpha subunit [Dros... 39 0.025
gi|1903291|emb|CAA98718| (Z74192) ORF YDL145c [Saccharomyces cer... 39 0.032
gi|3886024 (AF106576) contains similarity to WD domains [Caenorh... 39 0.032
gi|633648|emb|CAA58712| (X83754) alpha-COP [Saccharomyces cerevi... 39 0.032
gi|2506476|sp|P53622|COPA_YEAST COATOMER ALPHA SUBUNIT (ALPHA-CO... 39 0.032
gi|3503|emb|CAA29113| (X05625) CDC4 protein (AA 1-779) [Saccharo... 39 0.032
gi|3372654 (AF060245) zinc finger protein 106 [Mus musculus] 39 0.042
gi|3372657 (AF060246) zinc finger protein 106 [Mus musculus] 39 0.042
gi|3372651 (AF060244) zinc finger protein 106 [Mus musculus] 39 0.042
gi|1076382|pir||S49821 PRL2 protein - Arabidopsis thaliana (frag... 38 0.055
gi|3915814|sp|Q39190|PRL2_ARATH PP1/PP2A PHOSPHATASES PLEIOTROPI... 38 0.055
gi|1086900 (U41278) contains similarity to G beta repeats (PROSI... 38 0.055
gi|3386370 (AF075594) mitotic checkpoint control protein Bub3 [D... 38 0.055
gi|4127781|emb|CAA10070| (AJ012588) Notchless protein [Drosophil... 38 0.055
gi|3420749 (AF079447) myosin heavy chain kinase C [Dictyostelium... 38 0.055
gi|3947883|emb|CAA22294| (AL034382) putative Trp-Asp repeat prot... 38 0.072
gi|4530295|gb|AAD21971| (AF106679) WD-40 repeat protein [Drosoph... 38 0.072
gi|4558555|gb|AAD22648|AC007138_12 (AC007138) hypothetical prote... 38 0.072
gi|2507098|sp|P54319|PLAP_RAT PHOSPHOLIPASE A-2-ACTIVATING PROTE... 38 0.095
gi|4106818|gb|AAD03030| (AF083395) phospholipase A2-activating p... 38 0.095
gi|1017706 (U17901) PLAP [Rattus norvegicus] 38 0.095
gi|1169867|sp|P46800|GBLP_DICDI GUANINE NUCLEOTIDE-BINDING PROTE... 37 0.12
gi|1675220 (U67060) SREBP cleavage activating protein [Cricetulu... 37 0.16
gi|4128204 (AF051155) G-protein beta-subunit 6 [Rattus norvegicus] 37 0.16
gi|4263521|gb|AAD15347| (AC004044) putative WD-repeat protein [A... 37 0.16
gi|1228047|dbj|BAA12111| (D83782) the KIAA0199 gene is expressed... 36 0.21
gi|1947152 (AF000265) Similar to beta transducin [Caenorhabditis... 36 0.21
gi|3024219|sp|Q00664|NUDF_EMENI NUCLEAR MIGRATION PROTEIN NUDF >... 36 0.21
gi|432494 (L26505) Met30p [Saccharomyces cerevisiae] 36 0.28
gi|730077|sp|P39014|MT30_YEAST MET30 PROTEIN >gi|1078109|pir||S4... 36 0.28
gi|4164425|emb|CAA22842| (AL035247) hypothetical trp-asp repeat ... 36 0.28
gi|480009|pir||S36113 LIS-1 protein - human 36 0.37
gi|349828 (L13387) Miller-Dieker lissencephaly protein [Homo sap... 36 0.37
gi|449693|prf||1919424A Miller-Dieker lissencephaly gene [Homo s... 36 0.37
gi|3023956|sp|Q00808|HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROT... 36 0.37
gi|2739374 (AC002505) hypothetical protein [Arabidopsis thaliana] 36 0.37
gi|1170793|sp|P43033|LIS1_BOVIN PLATELET-ACTIVATING FACTOR ACETY... 36 0.37
gi|4557741|oth|NP_000421|PPAFAH1B1 platelet-activating factor ac... 36 0.37
gi|1170795|sp|P43035|LIS1_MOUSE PLATELET-ACTIVATING FACTOR ACETY... 36 0.37
gi|3850079|emb|CAA21906| (AL033389) WD-repeat protein [Schizosac... 36 0.37
gi|3122623|sp|O13615|PRL1_SCHPO PRL1/PRL2-LIKE PROTEIN >gi|22575... 35 0.63
gi|306785 (M16538) G protein beta subunit [Homo sapiens] 35 0.63
gi|1170675|sp|P42527|KMHA_DICDI MYOSIN HEAVY CHAIN KINASE A (MHC... 35 0.63
gi|4138841 (AF091120) G-protein beta subunit GPB1 [Filobasidiell... 35 0.63
gi|3123027|sp|O35828|W70T_RAT 70 KD WD-REPEAT TUMOR-SPECIFIC ANT... 34 0.82
gi|3880902|emb|CAA21549| (AL032627) predicted using Genefinder; ... 34 0.82
gi|2494901|sp|P78706|RCO1_NEUCR TRANSCRIPTIONAL REPRESSOR RCO-1 ... 34 0.82
gi|2494900|sp|P56094|TUP1_KLULA TRANSCRIPTIONAL REPRESSOR TUP1 >... 34 0.82
gi|544075|sp|P35605|COPP_BOVIN COATOMER BETA' SUBUNIT (BETA'-COA... 34 0.82
gi|486784|pir||S35342 Golgi-associated particle 102K chain - human 34 0.82
gi|544076|sp|P35606|COPP_HUMAN COATOMER BETA' SUBUNIT (BETA'-COA... 34 0.82
gi|1730215|sp|P54313|GBB2_RAT GUANINE NUCLEOTIDE-BINDING PROTEIN... 34 0.82
gi|3170523 (AF053883) coatomer alpha subunit [Emericella nidulans] 34 0.82
gi|4099537 (U88324) G protein beta1 subunit [Rattus norvegicus] 34 0.82
gi|4495124|emb|CAB38691| (AL035675) WD repeat protein; human U5 ... 34 0.82
gi|110808|pir||A40963 phospholipase A2-activating protein - mous... 34 0.82
gi|3122602|sp|P97865|PEX7_MOUSE PEROXISOMAL TARGETING SIGNAL 2 R... 34 0.82
gi|2507097|sp|P27612|PLAP_MOUSE PHOSPHOLIPASE A-2-ACTIVATING PRO... 34 1.1
gi|3123143|sp|Q23256|YH92_CAEEL HYPOTHETICAL 54.5 KD TRP-ASP REP... 34 1.1
gi|121009|sp|P11017|GBB2_BOVIN GUANINE NUCLEOTIDE-BINDING PROTEI... 34 1.1
gi|1346107|sp|P49178|GBB_MAIZE GUANINE NUCLEOTIDE-BINDING PROTEI... 34 1.1
gi|3023843|sp|Q40687|GBB_ORYSA GUANINE NUCLEOTIDE-BINDING PROTEI... 34 1.1
gi|1932938 (U80191) TFIID subunit TAFII100 [Homo sapiens] 34 1.1
gi|121010|sp|P11016|GBB2_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEI... 34 1.1
gi|71878|pir||RGFFB GTP-binding regulatory protein beta chain - ... 34 1.1
gi|1730214|sp|P54312|GBB2_MOUSE GUANINE NUCLEOTIDE-BINDING PROTE... 34 1.1
gi|1732075 (U75309) TBP-associated factor [Homo sapiens] 34 1.1
gi|163111 (M16539) G protein beta subunit [Bos taurus] 34 1.1
gi|2494905|sp|Q12024|YTM1_YEAST MICROTUBULE-ASSOCIATED PROTEIN Y... 34 1.1
gi|3024689|sp|Q15542|T2D4_HUMAN TRANSCRIPTION INITIATION FACTOR ... 34 1.1
gi|1709554|sp|P39946|PAC1_YEAST PAC1 PROTEIN >gi|2132375|pir||S6... 34 1.4
gi|3023838|sp|P79959|GBB1_XENLA GUANINE NUCLEOTIDE-BINDING PROTE... 34 1.4
gi|2832331|emb|CAA04687| (AJ001340) U3 snoRNP associated 55 kDa ... 34 1.4
gi|3702321 (AC005397) putative TGF-beta receptor interacting pro... 33 1.8
gi|2257500|dbj|BAA21396| (AB004535) G protein beta subunit [Schi... 33 1.8
gi|2829890 (AC002396) Hypothetical protein [Arabidopsis thaliana] 33 1.8
gi|3122136|sp|Q10282|GBB_SCHPO GUANINE NUCLEOTIDE-BINDING PROTEI... 33 1.8
gi|339937 (M36430) transducin beta-1 subunit [Homo sapiens] 33 2.4
gi|3122317|sp|P90648|KMHB_DICDI MYOSIN HEAVY CHAIN KINASE B (MHC... 33 2.4
gi|1848277 (U86136) telomerase-associated protein TP-1 [Homo sap... 33 2.4
gi|3387984 (AF070603) beta-subunit signal transducing proteins G... 33 2.4
gi|3702320 (AC005397) putative TGF-beta receptor interacting pro... 33 2.4
gi|1175392|sp|Q09715|YA3A_SCHPO HYPOTHETICAL 67.3 KD TRP-ASP REP... 33 2.4
gi|121008|sp|P04901|GBB1_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEI... 33 2.4
gi|1942174|pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-Al... 33 2.4
gi|3023852|sp|Q01369|GBLP_NEUCR GUANINE NUCLEOTIDE-BINDING PROTE... 33 2.4
gi|1730213|sp|P54311|GBB1_RAT GUANINE NUCLEOTIDE-BINDING PROTEIN... 33 2.4
gi|2494899|sp|P56093|TUP1_CANAL TRANSCRIPTIONAL REPRESSOR TUP1 >... 33 2.4
gi|3875822|emb|CAA88948| (Z49127) similar to guanine nucleotide-... 33 2.4
gi|121013|sp|P17343|GBB1_CAEEL GUANINE NUCLEOTIDE-BINDING PROTEI... 33 2.4
gi|4139469|pdb|1A0R|B Chain B, Heterotrimeric Complex Of Phosduc... 33 2.4
gi|4507703|oth|NP_003301|PTSSC1 tumor suppressing subtransferabl... 33 2.4
gi|3859574 (AF100287) activated protein kinase C receptor homolo... 33 2.4
gi|3122638|sp|Q42384|PRL1_ARATH PP1/PP2A PHOSPHATASES PLEIOTROPI... 33 2.4
gi|121026|sp|P25387|GBLP_CHLRE GUANINE NUCLEOTIDE-BINDING PROTEI... 33 2.4
gi|4455183|emb|CAB36715| (AL035521) putative protein [Arabidopsi... 32 3.2
gi|1730218|sp|Q08706|GBB_LYMST GUANINE NUCLEOTIDE-BINDING PROTEI... 32 3.2
gi|3560146|emb|CAA20733| (AL031534) beta transducin [Schizosacch... 32 3.2
gi|121012|sp|P29387|GBB4_MOUSE GUANINE NUCLEOTIDE-BINDING PROTEI... 32 3.2
gi|3738311 (AC005309) unknown protein [Arabidopsis thaliana] >gi... 32 3.2
gi|3873652|emb|CAA94873| (Z71177) Similarity with human nuclear ... 32 3.2
gi|3023846|sp|O18640|GBLP_DROME GUANINE NUCLEOTIDE-BINDING PROTE... 32 3.2
gi|2736365 (AF039038) similar to beta transducins [Caenorhabditi... 32 4.2
gi|3023854|sp|Q20636|GBB5_CAEEL GUANINE NUCLEOTIDE-BINDING PROTE... 32 4.2
gi|3023522|sp|O35142|COPP_RAT COATOMER BETA' SUBUNIT (BETA'-COAT... 32 4.2
gi|4505731|oth|NP_000279|PPEX7 peroxisomal biogenesis factor 7 >... 32 4.2
gi|3236249 (AC004684) hypothetical protein [Arabidopsis thaliana] 32 4.2
gi|1438062|emb|CAA64560| (X95263) PWP2 [Homo sapiens] 32 4.2
gi|2494898|sp|Q15269|PWP2_HUMAN PERIODIC TRYPTOPHAN PROTEIN 2 HO... 32 4.2
gi|2250699|dbj|BAA21137| (AB001517) PWP2 protein [Homo sapiens] 32 4.2
gi|3023859|sp|Q40507|GBB3_TOBAC GUANINE NUCLEOTIDE-BINDING PROTE... 32 5.4
gi|2982616|emb|CAA06154| (AJ004807) arcA 3 [Nicotiana tabacum] 32 5.4
gi|3122952|sp|O15736|TIPD_DICDI TIPD PROTEIN >gi|2407788 (AF0192... 32 5.4
gi|3287963|sp|Q20168|COPP_CAEEL PROBABLE COATOMER BETA' SUBUNIT ... 32 5.4
gi|3876927|emb|CAA92776| (Z68342) Similarity to Human Coatomer b... 32 5.4
gi|1169859|sp|P29829|GBB2_DROME GUANINE NUCLEOTIDE-BINDING PROTE... 32 5.4
gi|586324|sp|P38129|T2D4_YEAST TRANSCRIPTION INITIATION FACTOR T... 31 7.1
gi|2385410|dbj|BAA22162| (AB001372) TFIID subunit taf72p [Schizo... 31 7.1
gi|3183326|sp|O14186|YDSB_SCHPO HYPOTHETICAL 93.2 KD TRP-ASP REP... 31 7.1
gi|3204159|emb|CAA07084| (AJ006523) coatomer, beta-prime subunit... 31 7.1
gi|3023851|sp|P93340|GBLP_NICPL GUANINE NUCLEOTIDE-BINDING PROTE... 31 7.1
gi|3122262|sp|O02195|IF34_DROME EUKARYOTIC TRANSLATION INITIATIO... 31 7.1
gi|732202|sp|P41318|YNA6_YEAST HYPOTHETICAL 34.0 KD TRP-ASP REPE... 31 7.1
gi|3024419|sp|P87060|POP1_SCHPO WD-REPEAT PROTEIN POP1 >gi|20654... 31 7.1
gi|3023849|sp|O42248|GBLP_BRARE GUANINE NUCLEOTIDE-BINDING PROTE... 31 7.1
gi|3875246|emb|CAB04014| (Z81490) similar to WD domain, G-beta r... 31 9.3
gi|136482|sp|P16649|TUP1_YEAST GLUCOSE REPRESSION REGULATORY PRO... 31 9.3
gi|173067 (M31733) TUP1 protein [Saccharomyces cerevisiae] 31 9.3
gi|4460|emb|CAA34411| (X16365) SFL2 gene poduct (AA 1-669) [Sacc... 31 9.3
gi|1346106|sp|P49177|GBB_ARATH GUANINE NUCLEOTIDE-BINDING PROTEI... 31 9.3
gi|1002672 (U30261) G protein beta subunit-like; Method: concep... 31 9.3
gi|3023842|sp|P93563|GBB_SOLTU GUANINE NUCLEOTIDE-BINDING PROTEI... 31 9.3
>gi|3122986|sp|Q91854|TRCB_XENLA BETA-TRCP (BETA-TRANSDUCIN REPEAT-CONTAINING PROTEIN) (BTRCP)
>gi|539481|pir||B48088 beta-transducin repeat-containing
protein - African clawed frog >gi|295543 (M98268)
beta-TrCP [Xenopus laevis]
Length = 518
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 393 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 452
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 453 YDGKIKVWD 461
Score = 44.9 bits (104), Expect = 6e-04
Identities = 24/69 (34%), Positives = 35/69 (49%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ II+G D T+R+WD T + ++ L NN +VT +
Sbjct: 270 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 329
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 330 KDRSIAVWD 338
Score = 44.1 bits (102), Expect = 0.001
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ I+SG D T++IWD+ T +++ ++CL + I+TG+ D +
Sbjct: 235 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRVLMGHTGSVLCLQYDERVIITGSSDSTV 294
Query: 278 NVYDGN-GEYKDSLL 237
V+D N GE ++L+
Sbjct: 295 RVWDVNTGEMLNTLI 309
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W+ T + + I CL + +V+G+
Sbjct: 353 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 412
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 413 SDNTIRLWD 421
>gi|4165136 (AF101784) b-TRCP variant E3RS-IkappaB [Homo sapiens]
Length = 605
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 464 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 523
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 524 YDGKIKVWD 532
Score = 44.9 bits (104), Expect = 6e-04
Identities = 24/69 (34%), Positives = 35/69 (49%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ II+G D T+R+WD T + ++ L NN +VT +
Sbjct: 341 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 400
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 401 KDRSIAVWD 409
Score = 44.5 bits (103), Expect = 7e-04
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ I+SG D T++IWD+ T +I+ ++CL + I+TG+ D +
Sbjct: 306 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 365
Query: 278 NVYDGN-GEYKDSLL 237
V+D N GE ++L+
Sbjct: 366 RVWDVNTGEMLNTLI 380
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W+ T + + I CL + +V+G+
Sbjct: 424 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 483
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 484 SDNTIRLWD 492
>gi|3183289|sp|P87053|YDJ5_SCHPO HYPOTHETICAL 67.1 KD TRP-ASP REPEATS CONTAINING PROTEIN C57A10.05C
IN CHROMOSOME I >gi|2058372|emb|CAB08168| (Z94864)
putative sulfur metabolite control protein; WD repeats
[Schizosaccharomyces pombe]
Length = 605
Score = 52.7 bits (124), Expect = 3e-06
Identities = 20/69 (28%), Positives = 42/69 (59%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V+C++++ N + SG D T+R+W+ T Q +++ + + CL + K+++G+
Sbjct: 271 GHSDGVMCLQLVRNILASGSYDATIRLWNLATFQQVALLEGHSSGVTCLQFDQCKLISGS 330
Query: 293 MDGRINVYD 267
MD I +++
Sbjct: 331 MDKTIRIWN 339
Score = 39.9 bits (91), Expect = 0.019
Identities = 20/72 (27%), Positives = 37/72 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V C++ +ISG D T+RIW+ T I+ ++CL ++ +V+G+
Sbjct: 311 GHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTFDSTLLVSGS 370
Query: 293 MDGRINVYDGNG 258
D + ++ +G
Sbjct: 371 ADCTVKLWHFSG 382
Score = 36.0 bits (81), Expect = 0.28
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 473 GHEGPVLCIKILAN--CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVT 300
GH GPV ++I+ + ++SG D T++IW T T + L + ++ +
Sbjct: 390 GHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFS 449
Query: 299 GAMDGRINVYD 267
++DG I +D
Sbjct: 450 CSLDGTIKQWD 460
>gi|1490632 (U63921) beta-transducin repeat containing protein-2 [Xenopus
laevis]
Length = 232
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 91 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 150
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 151 YDGKIKVWD 159
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W+ T + + I CL + +V+G+
Sbjct: 51 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 110
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 111 SDNTIRLWD 119
>gi|4502477|oth|NP_003930|PBTRC UNKNOWN >gi|2995194|emb|CAA74572| (Y14153) beta-transducin repeats
containing protein [Homo sapiens]
Length = 569
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 428 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 487
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 488 YDGKIKVWD 496
Score = 44.9 bits (104), Expect = 6e-04
Identities = 24/69 (34%), Positives = 35/69 (49%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ II+G D T+R+WD T + ++ L NN +VT +
Sbjct: 305 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 364
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 365 KDRSIAVWD 373
Score = 44.5 bits (103), Expect = 7e-04
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ I+SG D T++IWD+ T +I+ ++CL + I+TG+ D +
Sbjct: 270 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 329
Query: 278 NVYDGN-GEYKDSLL 237
V+D N GE ++L+
Sbjct: 330 RVWDVNTGEMLNTLI 344
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W+ T + + I CL + +V+G+
Sbjct: 388 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 447
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 448 SDNTIRLWD 456
>gi|4008020 (AF099932) beta-TrCP protein E3RS-IkappaB [Mus musculus]
>gi|4336327|gb|AAD17755| (AF081887) ubiquitin ligase
FWD1 [Mus musculus]
Length = 569
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 428 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 487
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 488 YDGKIKVWD 496
Score = 44.9 bits (104), Expect = 6e-04
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ I+SG D T++IWD+ T +I+ ++CL + I+TG+ D +
Sbjct: 270 VYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 329
Query: 278 NVYDGN-GEYKDSLL 237
V+D N GE ++L+
Sbjct: 330 RVWDVNAGEMLNTLI 344
Score = 43.0 bits (99), Expect = 0.002
Identities = 23/69 (33%), Positives = 34/69 (48%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ II+G D T+R+WD + ++ L NN +VT +
Sbjct: 305 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCS 364
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 365 KDRSIAVWD 373
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W+ T + + I CL + +V+G+
Sbjct: 388 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 447
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 448 SDNTIRLWD 456
>gi|4140718|gb|AAD04181| (AF112979) beta-transducin repeat containing protein [Mus musculus]
Length = 569
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 428 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 487
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 488 YDGKIKVWD 496
Score = 44.5 bits (103), Expect = 7e-04
Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 1/74 (1%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ I+SG D T++IWD+ T +I+ ++CL I+TG+ D +
Sbjct: 270 VYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYGERVIITGSSDSTV 329
Query: 278 NVYDGN-GEYKDSLL 237
V+D N GE ++L+
Sbjct: 330 RVWDVNAGEMLNTLI 344
Score = 43.0 bits (99), Expect = 0.002
Identities = 23/69 (33%), Positives = 34/69 (48%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ II+G D T+R+WD + ++ L NN +VT +
Sbjct: 305 GHTGSVLCLQYGERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCS 364
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 365 KDRSIAVWD 373
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W+ T + + I CL + +V+G+
Sbjct: 388 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 447
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 448 SDNTIRLWD 456
>gi|3327206|dbj|BAA31671| (AB014596) KIAA0696 protein [Homo sapiens]
Length = 550
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 409 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 468
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 469 YDGKIKVWD 477
Score = 44.9 bits (104), Expect = 6e-04
Identities = 23/69 (33%), Positives = 36/69 (51%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ I++G D T+R+WD T + N ++ L +N +VT +
Sbjct: 286 GHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCS 345
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 346 KDRSIAVWD 354
Score = 43.8 bits (101), Expect = 0.001
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ IISG D +++IWD+ + K++ ++CL + IVTG+ D +
Sbjct: 251 VYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTV 310
Query: 278 NVYDGN-GEYKDSLL 237
V+D N GE ++L+
Sbjct: 311 RVWDVNTGEVLNTLI 325
Score = 37.5 bits (85), Expect = 0.095
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W T + + I CL + +V+G+
Sbjct: 369 GHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 428
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 429 SDNTIRLWD 437
>gi|1490634 (U63922) beta-transducin repeat containing protein-3 [Xenopus
laevis]
Length = 233
Score = 52.7 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D T+R+WD ++++ + C+ +N +IV+GA
Sbjct: 92 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 151
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 152 YDGKIKVWD 160
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W+ T + + I CL + +V+G+
Sbjct: 52 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 111
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 112 SDNTIRLWD 120
>gi|3123171|sp|Q09990|YSS1_CAEEL HYPOTHETICAL 80.3 KD TRP-ASP REPEATS CONTAINING PROTEIN K10B2.1 IN
CHROMOSOME II >gi|860695 (U28730) similar to
beta-transducin [Caenorhabditis elegans]
Length = 701
Score = 51.5 bits (121), Expect = 6e-06
Identities = 20/69 (28%), Positives = 39/69 (55%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH + C++ ++SG D T+R+WD + ++++ + C+ + +IV+GA
Sbjct: 419 GHRRGIACLQYRGRLVVSGSSDNTIRLWDIHSGVCLRVLEGHEELVRCIRFDEKRIVSGA 478
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 479 YDGKIKVWD 487
Score = 43.4 bits (100), Expect = 0.002
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ + I+SG D T++IWDR + +I+ ++CL +N I++G+ D +
Sbjct: 261 VYCLQYDDDKIVSGLRDNTIKIWDRKDYSCSRILSGHTGSVLCLQYDNRVIISGSSDATV 320
Query: 278 NVYD 267
V+D
Sbjct: 321 RVWD 324
Score = 43.0 bits (99), Expect = 0.002
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ IISG D T+R+WD T K + ++ L N +VT +
Sbjct: 296 GHTGSVLCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHLRFANGIMVTCS 355
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 356 KDRSIAVWD 364
Score = 36.7 bits (83), Expect = 0.16
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W T + + I CL +V+G+
Sbjct: 379 GHRAAVNVVDFDDRYIVSASGDRTIKVWSMDTLEFVRTLAGHRRGIACLQYRGRLVVSGS 438
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 439 SDNTIRLWD 447
>gi|1351791|sp|P25382|YCW2_YEAST HYPOTHETICAL 57.0 KD TRP-ASP REPEATS CONTAINING PROTEIN IN
CPR4-SSK22 INTERGENIC REGION >gi|83249|pir||S19487
hypothetical protein YCR072c - yeast (Saccharomyces
cerevisiae) >gi|1907211|emb|CAA42270| (X59720) YCR072c,
len:515 [Saccharomyces cerevisiae]
Length = 515
Score = 51.2 bits (120), Expect = 7e-06
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 506 RPXXXXXXXXSGHEGPVLCIKILANC---IISGGGDCTLRIWDRITKTQXKIIKRDNHWI 336
+P +GH +LC + +++G GD T RIWD T+T +K +W+
Sbjct: 130 KPVTRSSSAIAGHGSTILCSAFAPHTSSRMVTGAGDNTARIWDCDTQTPMHTLKGHYNWV 189
Query: 335 MCL--DANNDKIVTGAMDGRINVYD 267
+C+ + + I TG+MD I ++D
Sbjct: 190 LCVSWSPDGEVIATGSMDNTIRLWD 214
>gi|3122851|sp|Q00659|SCOB_EMENI SULFUR METABOLITE REPRESSION CONTROL PROTEIN >gi|1041197 (U21220)
sconB [Emericella nidulans]
Length = 678
Score = 50.8 bits (119), Expect = 1e-05
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V+C++ N + +G D T++IWD T + + ++ I CL ++ K+++G+
Sbjct: 347 GHTNGVMCLQFEDNILATGSYDTTIKIWDTETGEELRTLRGHESGIRCLQFDDTKLISGS 406
Query: 293 MDGRINVYD 267
MD I V++
Sbjct: 407 MDRTIKVWN 415
>gi|2853610 (AF032878) Slimb [Drosophila melanogaster]
Length = 510
Score = 48.8 bits (114), Expect = 4e-05
Identities = 19/69 (27%), Positives = 39/69 (55%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ + C++ ++SG D ++R+WD ++++ + C+ + +IV+GA
Sbjct: 371 GHKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGA 430
Query: 293 MDGRINVYD 267
DG+I V+D
Sbjct: 431 YDGKIKVWD 439
Score = 45.7 bits (106), Expect = 3e-04
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH G VLC++ IISG D T+R+WD T + ++ L NN +VT +
Sbjct: 248 GHTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCS 307
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 308 KDRSIAVWD 316
Score = 42.6 bits (98), Expect = 0.003
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 458 VLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRI 279
V C++ I+SG D T++IWDR K + ++CL ++ I++G+ D +
Sbjct: 213 VYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDDKVIISGSSDSTV 272
Query: 278 NVYDGN-GEYKDSLL 237
V+D N GE ++L+
Sbjct: 273 RVWDVNTGEMVNTLI 287
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + I+S GD T+++W T + + I CL + +V+G+
Sbjct: 331 GHRAAVNVVDFDEKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 390
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 391 SDNSIRLWD 399
>gi|3766367|emb|CAA21419| (AL031907) trp-asp repeat containing protein [Schizosaccharomyces
pombe]
Length = 502
Score = 46.1 bits (107), Expect = 2e-04
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 473 GHEGPVLCIKI---LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK-- 309
GH+G ++ + ++ +++G GD T R+WD T+T +K +W+ C+ D
Sbjct: 132 GHDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPDASI 191
Query: 308 IVTGAMDGRINVYD 267
I TG+MD I +D
Sbjct: 192 IATGSMDNTIRFWD 205
>gi|3183124|sp|O14170|POP2_SCHPO WD-REPEAT PROTEIN POP2 >gi|2330806|emb|CAB11275| (Z98602)
proteolysis factor sud1p. [Schizosaccharomyces pombe]
>gi|2766702 (AF038867) F-box/WD-repeat protein Pop2p
[Schizosaccharomyces pombe] >gi|3293383 (AF064515)
proteolysis factor Sud1p [Schizosaccharomyces pombe]
Length = 703
Score = 44.1 bits (102), Expect = 0.001
Identities = 21/69 (30%), Positives = 38/69 (54%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ V + + N +ISG D T+RIWD T ++ ++ +I ++ KI++G
Sbjct: 587 GHDAFVTLLNVFQNRLISGSADSTIRIWDLNTGKPLMVLPSNSGYISSFVSDEHKIISG- 645
Query: 293 MDGRINVYD 267
DG + ++D
Sbjct: 646 NDGSVKLWD 654
Score = 38.3 bits (87), Expect = 0.055
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 434 NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRINVYDGN 261
N ISG D ++R+WD T T +++ + ++ L+ +++++G+ D I ++D N
Sbjct: 560 NICISGSMDKSIRVWDLSTGTCKYVLEGHDAFVTLLNVFQNRLISGSADSTIRIWDLN 617
>gi|3122852|sp|Q01277|SCO2_NEUCR SULFUR CONTROLLER-2 (SCON2) >gi|806758 (U17251) sulfur controller-2
[Neurospora crassa]
Length = 650
Score = 42.6 bits (98), Expect = 0.003
Identities = 19/69 (27%), Positives = 39/69 (55%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GHE V C+++ N + +G D T++IW+ T+ + + I L ++ K+++G+
Sbjct: 292 GHENGVTCLQLDDNILATGSYDTTIKIWNIETEECIRTLVGHTAGIRALQFDDSKLISGS 351
Query: 293 MDGRINVYD 267
+D I V++
Sbjct: 352 LDHTIKVWN 360
Score = 31.7 bits (70), Expect = 5.4
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 425 ISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRINVYD 267
++GG D T+R+WD T + + + L + ++++GA DG + ++
Sbjct: 552 MTGGLDSTMRLWDSATGRCLRTLFGHLEGVWSLAGDTIRVISGANDGMVKTWE 604
>gi|1705681|sp|P53699|CC4_CANAL CELL DIVISION CONTROL PROTEIN 4 >gi|1255917|emb|CAA65538| (X96763)
CDC4 [Candida albicans]
Length = 684
Score = 42.6 bits (98), Expect = 0.003
Identities = 21/68 (30%), Positives = 33/68 (47%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GHEG V +K N +++G D T+R+W+ T I + I CLD + ++
Sbjct: 363 GHEGGVWALKYTGNTLVTGSTDRTVRVWNMKTGQCTHIFRGHTSTIRCLDIIHPAVIGKN 422
Query: 293 MDGRINVY 270
DG V+
Sbjct: 423 QDGEDIVF 430
Score = 39.1 bits (89), Expect = 0.032
Identities = 26/79 (32%), Positives = 40/79 (49%), Gaps = 4/79 (5%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKR---DNHWIMCLDANNDKIV 303
GH V I N IISG D T+R+WD + + + D + +D ++
Sbjct: 478 GHTQSVRSISGYGNIIISGSYDSTVRVWDLLDDGHCTHVLQGHLDRVYSTAIDFHSKTCF 537
Query: 302 TGAMDGRINVYD-GNGEYKDSLL 237
+G+MD INV++ GE K L+
Sbjct: 538 SGSMDSNINVWNFETGELKKVLV 560
Score = 34.8 bits (78), Expect = 0.63
Identities = 17/60 (28%), Positives = 30/60 (49%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + ++ + ++S D TLRIWD T +K I C + + ++V+G+
Sbjct: 561 GHASLVGLLDLVDDVLVSAAADATLRIWDAKTGELRSKLKGHGAAITCFEHDGLRVVSGS 620
>gi|3123159|sp|Q17963|YKY4_CAEEL HYPOTHETICAL 40.4 KD TRP-ASP REPEATS CONTAINING PROTEIN C14B1.4 IN
CHROMOSOME III >gi|3874290|emb|CAA85487| (Z37139)
similar to guanine nucleotide binding protein; cDNA EST
EMBL:T00917 comes from this gene; cDNA EST CEMSE07F
comes from this gene; cDNA EST EMBL:T00918 comes from
this gene; cDNA EST EMBL:D70900 comes from this gene;
cD...
Length = 376
Score = 41.4 bits (95), Expect = 0.006
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 437 ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDAN--NDKIVTGAMDGRINVYD 267
+ C++S D TL+I++ +T K +K N+++ C + N + +V+G+ D + ++D
Sbjct: 141 SRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWD 199
Score = 34.8 bits (78), Expect = 0.63
Identities = 22/73 (30%), Positives = 38/73 (51%), Gaps = 5/73 (6%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KI 306
GH V C ++ ++SG D ++RIWD T K + + + + N D I
Sbjct: 169 GHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLI 228
Query: 305 VTGAMDGRINVYD-GNGE 255
+G+ DG + ++D NG+
Sbjct: 229 ASGSYDGLVRIWDTANGQ 246
>gi|4028547 (AF093689) MEK kinase alpha [Dictyostelium discoideum]
Length = 942
Score = 41.0 bits (94), Expect = 0.008
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 473 GHEGPVLCIKI---------LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDA 321
GH G + C+K + ++S D T +WD + ++ + + ++C
Sbjct: 779 GHTGGIYCVKTDQVATHGNGYNHLVVSASVDKTSNVWDTRSSSKVRSFTQHTEDVLCCYV 838
Query: 320 NNDKIVTGAMDGRINVYD-GNGE 255
+ K+VTG+ DG I ++D G G+
Sbjct: 839 FDQKVVTGSCDGTIKLWDIGTGK 861
Score = 37.1 bits (84), Expect = 0.12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRINVY 270
IIS G +RIWD + + I + I L NN K++TG++D + ++
Sbjct: 887 IISSGKTGIIRIWDIYNERDSRSIGGHHETIFSLQFNNQKLITGSLDKLVKIW 939
Score = 31.3 bits (69), Expect = 7.1
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 473 GHEGPVLCIKILAN--CIISGGGDCTLRIWD 387
GH+ V C+K++ + ++SGG D L++WD
Sbjct: 607 GHDKGVFCVKLIDDQGMVLSGGEDKKLKVWD 637
>gi|4494034|emb|CAB39129| (AL034560) predicted using hexExon; MAL3P8.18 (PFC0100c),
Hypothetical protein, len: 578 aa; Similarity to guanine
nucleotide-binding protein. M.musculus pleotropic
regulator 1 (TR:O55039) BLAST score: 939, P(1) =
1.4e-94, 53...
Length = 577
Score = 41.0 bits (94), Expect = 0.008
Identities = 24/78 (30%), Positives = 44/78 (55%), Gaps = 5/78 (6%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKI 306
GH V C+ + + ++SGG D +R+WD TK+ ++ +M C + ++
Sbjct: 368 GHLSGVYCLSLHPSLDLLMSGGRDAVVRVWDIRTKSSVFVLSGHTGTVMSICSQSVEPQV 427
Query: 305 VTGAMDGRINVYD-GNGEYKDSL 240
V+G+ D I ++D NG+ + SL
Sbjct: 428 VSGSQDKMIRLWDLNNGKCRISL 450
>gi|2494888|sp|Q27954|COPA_BOVIN COATOMER ALPHA SUBUNIT (ALPHA-COAT PROTEIN) (ALPHA-COP) (HEPCOP)
>gi|1237029|emb|CAA65543| (X96768) alpha-cop protein
[Bos primigenius]
Length = 1224
Score = 41.0 bits (94), Expect = 0.008
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYDGNGE 255
I+S D T+R+W+ ++T ++ NH++MC + D +V+ ++D + V+D +G
Sbjct: 108 ILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGL 167
Query: 254 YKDSL 240
K +L
Sbjct: 168 RKKNL 172
>gi|1351616|sp|Q09855|YAF1_SCHPO HYPOTHETICAL TRP-ASP REPEATS CONTAINING PROTEIN C29E6.01 IN
CHROMOSOME I >gi|1044927|emb|CAA91423| (Z66525) unknown
[Schizosaccharomyces pombe]
Length = 267
Score = 41.0 bits (94), Expect = 0.008
Identities = 18/70 (25%), Positives = 38/70 (53%)
Query: 470 HEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAM 291
H+ + C + I+SG D T+RI++ + ++++ I + N++KIV+G
Sbjct: 149 HQRGIACAQYNGKFIVSGSSDLTIRIFEASSGKLLRMLQGHEDLIRTVRFNDEKIVSGGY 208
Query: 290 DGRINVYDGN 261
DG + +++ N
Sbjct: 209 DGTVRIWNFN 218
Score = 35.2 bits (79), Expect = 0.48
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAMDGRINVYDGN 261
I++ D TLR WD T +II I C N IV+G+ D I +++ +
Sbjct: 123 IVTASSDRTLRTWDITTGHCIRIIHAHQRGIACAQYNGKFIVSGSSDLTIRIFEAS 178
Score = 34.4 bits (77), Expect = 0.82
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 473 GHEGPVLCIKILA--NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVT 300
GH G VLC+ N ++SG D T+ IWD + K+ ++ + + + I++
Sbjct: 20 GHSGSVLCLDFCRRRNLLVSGSSDSTIIIWDWQNRRPLKVYFGHTDNVLGVVVSENYIIS 79
Query: 299 GAMDGRINVY 270
+ D V+
Sbjct: 80 SSRDHTARVW 89
>gi|1168815|sp|P07834|CC4_YEAST CELL DIVISION CONTROL PROTEIN 4 >gi|1084527|pir||S56245 cell
division control protein CDC4 - yeast (Saccharomyces
cerevisiae) >gi|836745|dbj|BAA09229| (D50617) cell
division control protein 4 [Saccharomyces cerevisiae]
>gi|836815|dbj|BAA06495| (D31600) cdc4 gene product
which is essential for initiation of DNA replication in
yeast [Saccharomyces cerevisiae]
Length = 779
Score = 40.6 bits (93), Expect = 0.011
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 473 GHEGPVLCIKIL-ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD----ANNDK 309
GH+G V +K ++SG D T+R+WD + K N + CLD N
Sbjct: 420 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFKGHNSTVRCLDIVEYKNIKY 479
Query: 308 IVTGAMDGRINVY 270
IVTG+ D ++V+
Sbjct: 480 IVTGSRDNTLHVW 492
>gi|1705996|sp|P53621|COPA_HUMAN COATOMER ALPHA SUBUNIT (ALPHA-COAT PROTEIN) (ALPHA-COP) (HEP-COP)
>gi|2144979|pir||ERHUAH coatomer complex alpha chain
homolog - human >gi|1002369 (U24105) coatomer protein
[Homo sapiens]
Length = 1224
Score = 40.6 bits (93), Expect = 0.011
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYDGNGE 255
I+S D T+R+W+ ++T ++ NH++MC D +V+ ++D + V+D +G
Sbjct: 108 ILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVRVWDISGL 167
Query: 254 YKDSL 240
K +L
Sbjct: 168 RKKNL 172
>gi|559926|emb|CAA86341| (Z46255) cdc4, incomplete, len: 579, CAI, 0.15, CC4_YEAST P07834
CELL DIVISION CONTROL PROTEIN 4 [Saccharomyces
cerevisiae]
Length = 579
Score = 40.6 bits (93), Expect = 0.011
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 473 GHEGPVLCIKIL-ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD----ANNDK 309
GH+G V +K ++SG D T+R+WD + K N + CLD N
Sbjct: 420 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFKGHNSTVRCLDIVEYKNIKY 479
Query: 308 IVTGAMDGRINVY 270
IVTG+ D ++V+
Sbjct: 480 IVTGSRDNTLHVW 492
>gi|549752|sp|P36037|DOA1_YEAST DOA1 PROTEIN >gi|539311|pir||S38051 DOA1 protein - yeast
(Saccharomyces cerevisiae) >gi|473137|emb|CAA53560|
(X75951) ORF6, F715 [Saccharomyces cerevisiae]
>gi|486381|emb|CAA82058| (Z28213) ORF YKL213c
[Saccharomyces cerevisiae] >gi|1086570 (U39947) Doa1p
[Saccharomyces cerevisiae]
Length = 715
Score = 40.2 bits (92), Expect = 0.014
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 473 GHEGPVLCIKILAN-CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDA-NNDKIVT 300
GHE V CIK+L N I+S G D T+RIW + + ++I I +D +N I+
Sbjct: 218 GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV 277
Query: 299 GAMDGRINVY 270
G+ D + ++
Sbjct: 278 GSSDNLVRIF 287
>gi|549607|sp|P36130|YK16_YEAST HYPOTHETICAL 74.7 KD TRP-ASP REPEATS CONTAINING PROTEIN IN
DAL80-GAP1 INTERGENIC REGION >gi|539251|pir||S38108
hypothetical protein YKR036c - yeast (Saccharomyces
cerevisiae) >gi|486473|emb|CAA82110| (Z28261) ORF
YKR036c [Saccharomyces cerevisiae]
Length = 659
Score = 40.2 bits (92), Expect = 0.014
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 527 HKDEKMARPXXXXXXXXSGHEGPVL-CIKILANCIISGGGDCTLRIWDRITKTQXKIIKR 351
H D KM G E P++ ++ + + +G D +R+WD ++++
Sbjct: 484 HSDIKMPARSLNNGACLLGTEAPMIGALQCYNSALATGTKDGIVRLWDLRVGKPVRLLEG 543
Query: 350 DNHWIMCLDANNDKIVTGAMDGRINVYD 267
I L +++K+VTG+MD + ++D
Sbjct: 544 HTDGITSLKFDSEKLVTGSMDNSVRIWD 571
Score = 36.7 bits (83), Expect = 0.16
Identities = 20/69 (28%), Positives = 36/69 (51%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH + +K + +++G D ++RIWD T + +I D + LD + I GA
Sbjct: 543 GHTDGITSLKFDSEKLVTGSMDNSVRIWDLRTSSILDVIAYDLP-VSSLDFDGKLITVGA 601
Query: 293 MDGRINVYD 267
+G +NV++
Sbjct: 602 NEGGVNVFN 610
>gi|3687833|gb|AAC62236| (AF069737) notchless [Xenopus laevis]
Length = 476
Score = 39.9 bits (91), Expect = 0.019
Identities = 21/69 (30%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KI 306
GH V+ + + SG GD T+R WD T+T K HW++ + + D K+
Sbjct: 103 GHTEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTSKGHTHWVLSIAWSPDGKKL 162
Query: 305 VTGAMDGRINVYD 267
+G + +I ++D
Sbjct: 163 ASGCKNSQIFIWD 175
>gi|3367534 (AC004392) Strong similarity to coatamer alpha subunit (HEPCOP)
homolog gb|U24105 from Homo sapiens. [Arabidopsis
thaliana]
Length = 1216
Score = 39.9 bits (91), Expect = 0.019
Identities = 17/54 (31%), Positives = 32/54 (58%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYD 267
I+S D T+RIW+ ++T ++ NH++MC D +V+ ++D + V+D
Sbjct: 108 IVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
>gi|4567286|gb|AAD23699|AC006841_27 (AC006841) putative coatomer alpha subunit [Arabidopsis thaliana]
Length = 1218
Score = 39.9 bits (91), Expect = 0.019
Identities = 17/54 (31%), Positives = 32/54 (58%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYD 267
I+S D T+RIW+ ++T ++ NH++MC D +V+ ++D + V+D
Sbjct: 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
>gi|2677836 (AF020788) SEL-10 [Caenorhabditis elegans]
Length = 587
Score = 39.5 bits (90), Expect = 0.025
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDKIVT 300
GH V C++ ++SGG D T++IW+ T + + N+ + L ++ + +
Sbjct: 376 GHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCS 435
Query: 299 GAMDGRINVYD 267
G++D I V+D
Sbjct: 436 GSLDTSIRVWD 446
Score = 39.1 bits (89), Expect = 0.032
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V C+ + + +++G D TLR+WD + + + + C+ + +V+G
Sbjct: 336 GHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQFDGTTVVSGG 395
Query: 293 MDGRINVYDGN 261
D + +++ +
Sbjct: 396 YDFTVKIWNAH 406
Score = 34.0 bits (76), Expect = 1.1
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILANC---IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIV 303
GH G V +I + C I+SG D T+++W + + ++ + C+ +V
Sbjct: 294 GHTGGVWTSQI-SQCGRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAGSILV 352
Query: 302 TGAMDGRINVYD 267
TG+ D + V+D
Sbjct: 353 TGSRDTTLRVWD 364
>gi|3915881|sp|Q93794|SE10_CAEEL SEL-10 PROTEIN >gi|3877677|emb|CAB02129| (Z79757) Similarity to
Candida CDC4 gene (TR:E234056); cDNA EST EMBL:D27699
comes from this gene; cDNA EST EMBL:D27698 comes from
this gene; cDNA EST EMBL:D32793 comes from this gene;
cDNA EST EMBL:D33271 comes from this gene; ...
Length = 579
Score = 39.5 bits (90), Expect = 0.025
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDKIVT 300
GH V C++ ++SGG D T++IW+ T + + N+ + L ++ + +
Sbjct: 368 GHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCS 427
Query: 299 GAMDGRINVYD 267
G++D I V+D
Sbjct: 428 GSLDTSIRVWD 438
Score = 39.1 bits (89), Expect = 0.032
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V C+ + + +++G D TLR+WD + + + + C+ + +V+G
Sbjct: 328 GHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQFDGTTVVSGG 387
Query: 293 MDGRINVYDGN 261
D + +++ +
Sbjct: 388 YDFTVKIWNAH 398
Score = 34.0 bits (76), Expect = 1.1
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILANC---IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIV 303
GH G V +I + C I+SG D T+++W + + ++ + C+ +V
Sbjct: 286 GHTGGVWTSQI-SQCGRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAGSILV 344
Query: 302 TGAMDGRINVYD 267
TG+ D + V+D
Sbjct: 345 TGSRDTTLRVWD 356
>gi|3676167|emb|CAA09492| (AJ011114) coatomer alpha subunit [Drosophila melanogaster]
Length = 1234
Score = 39.5 bits (90), Expect = 0.025
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYDGNGE 255
I+S D T+RIW+ ++ ++ NH++MC D+IV+ ++D + V+D +G
Sbjct: 108 ILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTEDQIVSASLDQTVRVWDISGL 167
Query: 254 YKDSL 240
K ++
Sbjct: 168 RKKNV 172
>gi|1903291|emb|CAA98718| (Z74192) ORF YDL145c [Saccharomyces cerevisiae]
Length = 1075
Score = 39.1 bits (89), Expect = 0.032
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYDGNG 258
IIS D T+RIW+ + + + NH++MC +D IV+ ++D I ++D +G
Sbjct: 110 IISASDDQTIRIWNWQNRKEIACLTGHNHFVMCAQFHPTDDLIVSASLDETIRIWDISG 168
Score = 33.2 bits (74), Expect = 1.8
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 434 NCIISGGGDCTLRIWDRITKTQXKIIKRDN 345
N IIS G D TLR+WD +T K KR+N
Sbjct: 266 NLIISVGEDKTLRVWDLDKRTPVKQFKREN 295
>gi|3886024 (AF106576) contains similarity to WD domains [Caenorhabditis
elegans]
Length = 473
Score = 39.1 bits (89), Expect = 0.032
Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 4/80 (5%)
Query: 506 RPXXXXXXXXSGHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIM 333
RP GH PV+ + + + SG GD T+RIWD + K W++
Sbjct: 92 RPVTRCSASIPGHGEPVISAQFSPDGRGLASGSGDQTMRIWDIELELPLHTCKSHKSWVL 151
Query: 332 CLDANND--KIVTGAMDGRINVYD 267
C+ + D KI + +G I +++
Sbjct: 152 CIAWSPDATKIASACKNGEICIWN 175
>gi|633648|emb|CAA58712| (X83754) alpha-COP [Saccharomyces cerevisiae]
>gi|663088|emb|CAA86588| (Z46617) Ret1p = alpha-COP =
alpha subunit of the coatomer complex (COPI)
[Saccharomyces cerevisiae]
Length = 1201
Score = 39.1 bits (89), Expect = 0.032
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYDGNG 258
IIS D T+RIW+ + + + NH++MC +D IV+ ++D I ++D +G
Sbjct: 110 IISASDDQTIRIWNWQNRKEIACLTGHNHFVMCAQFHPTDDLIVSASLDETIRIWDISG 168
Score = 33.2 bits (74), Expect = 1.8
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 434 NCIISGGGDCTLRIWDRITKTQXKIIKRDN 345
N IIS G D TLR+WD +T K KR+N
Sbjct: 266 NLIISVGEDKTLRVWDLDKRTPVKQFKREN 295
>gi|2506476|sp|P53622|COPA_YEAST COATOMER ALPHA SUBUNIT (ALPHA-COAT PROTEIN) (ALPHA-COP)
>gi|2144978|pir||ERBYA coatomer complex alpha chain RET1
- yeast (Saccharomyces cerevisiae)
>gi|1431227|emb|CAA98719| (Z74193) ORF YDL145c
[Saccharomyces cerevisiae]
Length = 1201
Score = 39.1 bits (89), Expect = 0.032
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYDGNG 258
IIS D T+RIW+ + + + NH++MC +D IV+ ++D I ++D +G
Sbjct: 110 IISASDDQTIRIWNWQNRKEIACLTGHNHFVMCAQFHPTDDLIVSASLDETIRIWDISG 168
Score = 33.2 bits (74), Expect = 1.8
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 434 NCIISGGGDCTLRIWDRITKTQXKIIKRDN 345
N IIS G D TLR+WD +T K KR+N
Sbjct: 266 NLIISVGEDKTLRVWDLDKRTPVKQFKREN 295
>gi|3503|emb|CAA29113| (X05625) CDC4 protein (AA 1-779) [Saccharomyces cerevisiae]
Length = 779
Score = 39.1 bits (89), Expect = 0.032
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 473 GHEGPVLCIKIL-ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD----ANNDK 309
GH+G V +K ++SG D T+R+WD + + N + CLD N
Sbjct: 420 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 479
Query: 308 IVTGAMDGRINVY 270
IVTG+ D ++V+
Sbjct: 480 IVTGSRDNTLHVW 492
>gi|3372654 (AF060245) zinc finger protein 106 [Mus musculus]
Length = 287
Score = 38.7 bits (88), Expect = 0.042
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH VLC+K++ + + SG D ++ + T +I K NH + ++ +VT
Sbjct: 102 GHSKTVLCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTAC 161
Query: 293 MDGRINVYD 267
+D + VY+
Sbjct: 162 LDKFVRVYE 170
>gi|3372657 (AF060246) zinc finger protein 106 [Mus musculus]
Length = 1888
Score = 38.7 bits (88), Expect = 0.042
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH VLC+K++ + + SG D ++ + T +I K NH + ++ +VT
Sbjct: 1703 GHSKTVLCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTAC 1762
Query: 293 MDGRINVYD 267
+D + VY+
Sbjct: 1763 LDKFVRVYE 1771
>gi|3372651 (AF060244) zinc finger protein 106 [Mus musculus]
Length = 339
Score = 38.7 bits (88), Expect = 0.042
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH VLC+K++ + + SG D ++ + T +I K NH + ++ +VT
Sbjct: 154 GHSKTVLCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTAC 213
Query: 293 MDGRINVYD 267
+D + VY+
Sbjct: 214 LDKFVRVYE 222
>gi|1076382|pir||S49821 PRL2 protein - Arabidopsis thaliana (fragment)
Length = 431
Score = 38.3 bits (87), Expect = 0.055
Identities = 21/69 (30%), Positives = 36/69 (51%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND-KIV 303
GH V C+ + + +++GG D R+WD TK Q ++ D+ L D +++
Sbjct: 204 GHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVI 263
Query: 302 TGAMDGRINVYD 267
TG+ D I +D
Sbjct: 264 TGSHDSTIKFWD 275
>gi|3915814|sp|Q39190|PRL2_ARATH PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR PRL2
>gi|2916744|emb|CAA58033| (X82826) PRL2 [Arabidopsis
thaliana]
Length = 479
Score = 38.3 bits (87), Expect = 0.055
Identities = 21/69 (30%), Positives = 36/69 (51%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND-KIV 303
GH V C+ + + +++GG D R+WD TK Q ++ D+ L D +++
Sbjct: 252 GHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVI 311
Query: 302 TGAMDGRINVYD 267
TG+ D I +D
Sbjct: 312 TGSHDSTIKFWD 323
>gi|1086900 (U41278) contains similarity to G beta repeats (PROSITE:PS00670) of
the beta-transducin family [Caenorhabditis elegans]
Length = 286
Score = 38.3 bits (87), Expect = 0.055
Identities = 20/59 (33%), Positives = 35/59 (58%), Gaps = 5/59 (8%)
Query: 437 ANCIISGGGDCTLRIWDRITKTQX--KIIKRDNHWIMCLDANNDKIVTGAMDGRINVY-- 270
++ + SG DCT++ +D ++++ +I I+ +D N +IV G+ DG VY
Sbjct: 93 SSVVFSGSMDCTMQAFDCRSRSEKPIQIFNESTDGILSIDVNGHEIVAGSADGNYRVYSI 152
Query: 269 -DGN 261
DGN
Sbjct: 153 RDGN 156
>gi|3386370 (AF075594) mitotic checkpoint control protein Bub3 [Drosophila
melanogaster]
Length = 327
Score = 38.3 bits (87), Expect = 0.055
Identities = 18/68 (26%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 470 HEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTG 297
HE P+ C++ N I++G D T+++WD K +++N + + ++KIV
Sbjct: 94 HEEPIRCVEHAEYVNGILTGSWDNTVKLWDMREKRCVGTFEQNNGKVYSMSVIDEKIVVA 153
Query: 296 AMDGRINVYD 267
D ++ ++D
Sbjct: 154 TSDRKVLIWD 163
>gi|4127781|emb|CAA10070| (AJ012588) Notchless protein [Drosophila melanogaster]
Length = 480
Score = 38.3 bits (87), Expect = 0.055
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 506 RPXXXXXXXXSGHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIM 333
RP GH V+ + + + SG GD T+R+WD T+T W++
Sbjct: 98 RPVTRCTSSMPGHAEAVVSLNFSPDGAHLASGSGDTTVRLWDLNTETPHFTCTGHKQWVL 157
Query: 332 CLD--ANNDKIVTGAMDGRINVYD 267
C+ + ++ +G G I ++D
Sbjct: 158 CVSWAPDGKRLASGCKAGSIIIWD 181
>gi|3420749 (AF079447) myosin heavy chain kinase C [Dictyostelium discoideum]
Length = 751
Score = 38.3 bits (87), Expect = 0.055
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH + + + N + SG D + +W+ T T + W+ L A+N+ + +G+
Sbjct: 631 GHTRAIKSVCAMGNLLFSGSNDQQIYVWNLATGTILTNFQGHEGWVKTLYAHNNMLYSGS 690
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 691 HDETIRIWD 699
Score = 32.5 bits (72), Expect = 3.2
Identities = 22/62 (35%), Positives = 28/62 (44%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GHEG V + N + SG D T+RIWD T IK + + L N I G+
Sbjct: 671 GHEGWVKTLYAHNNMLYSGSHDETIRIWDLKTTRCVNTIKCKDR-VETLHVTNQGIFAGS 729
Query: 293 MD 288
D
Sbjct: 730 GD 731
>gi|3947883|emb|CAA22294| (AL034382) putative Trp-Asp repeat protein [Schizosaccharomyces
pombe]
Length = 494
Score = 37.9 bits (86), Expect = 0.072
Identities = 19/54 (35%), Positives = 33/54 (60%), Gaps = 4/54 (7%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHW--IMCLDAN--NDKIVTGAMDGRINVYD 267
+IS GG ++++WD + Q K NH I CL N N ++++G +DG + +Y+
Sbjct: 222 VISAGGP-SIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTRLLSGGLDGHVKIYN 278
>gi|4530295|gb|AAD21971| (AF106679) WD-40 repeat protein [Drosophila melanogaster]
Length = 326
Score = 37.9 bits (86), Expect = 0.072
Identities = 18/68 (26%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Query: 470 HEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTG 297
HE P+ C++ N I++G D T+++WD K +++N + + ++KIV
Sbjct: 94 HEEPIKCLEHAEYVNGILTGSWDNTVKLWDMREKRCLGTFEQNNGKVYSMSVIDEKIVVA 153
Query: 296 AMDGRINVYD 267
D ++ ++D
Sbjct: 154 TSDRKVLIWD 163
>gi|4558555|gb|AAD22648|AC007138_12 (AC007138) hypothetical protein [Arabidopsis thaliana]
Length = 1216
Score = 37.9 bits (86), Expect = 0.072
Identities = 23/68 (33%), Positives = 33/68 (47%), Gaps = 3/68 (4%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRD---NHWIMCLDANNDKIV 303
GH V I + I++ G DCT R+W + TQ ++IK W D N+ +V
Sbjct: 276 GHSVRVWDCCISDSLIVTAGEDCTCRVWG-VDGTQLEVIKEHIGRGIWRCLYDPNSSLLV 334
Query: 302 TGAMDGRINVY 270
T D I V+
Sbjct: 335 TAGFDSAIKVH 345
>gi|2507098|sp|P54319|PLAP_RAT PHOSPHOLIPASE A-2-ACTIVATING PROTEIN (PLAP) >gi|1363987|pir||JC4239
phospholipase A2-activating protein - rat
Length = 647
Score = 37.5 bits (85), Expect = 0.095
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVT 300
GH + I + NC ++ D +LRIW Q + + W C+ N D IV
Sbjct: 172 GHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGD-IVV 230
Query: 299 GAMDGRINVY 270
GA DG I V+
Sbjct: 231 GASDGIIRVF 240
>gi|4106818|gb|AAD03030| (AF083395) phospholipase A2-activating protein [Homo sapiens]
Length = 738
Score = 37.5 bits (85), Expect = 0.095
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVT 300
GH + I + NC ++ D +LRIW Q + + W C+ N D IV
Sbjct: 172 GHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGD-IVV 230
Query: 299 GAMDGRINVY 270
GA DG I V+
Sbjct: 231 GASDGIIRVF 240
>gi|1017706 (U17901) PLAP [Rattus norvegicus]
Length = 351
Score = 37.5 bits (85), Expect = 0.095
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVT 300
GH + I + NC ++ D +LRIW Q + + W C+ N D IV
Sbjct: 172 GHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGD-IVV 230
Query: 299 GAMDGRINVY 270
GA DG I V+
Sbjct: 231 GASDGIIRVF 240
>gi|1169867|sp|P46800|GBLP_DICDI GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
>gi|881422 (U27537) G beta like protein [Dictyostelium
discoideum]
Length = 332
Score = 37.1 bits (84), Expect = 0.12
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 425 ISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKIVTGAMDGRINVYDGNGEY 252
+SG D TLR+WD ++ K +M ++N +I++G+ D I V++ GE
Sbjct: 86 LSGSWDNTLRLWDITKGVSTRLFKGHTQDVMSVAFSSDNRQIISGSRDATIKVWNTLGEC 145
Query: 251 KDSL 240
K +L
Sbjct: 146 KFTL 149
Score = 30.9 bits (68), Expect = 9.3
Identities = 17/69 (24%), Positives = 38/69 (54%), Gaps = 9/69 (13%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL-------DA 321
GH V+ + ++ IISG D T+++W+ + + + + + H + +
Sbjct: 110 GHTQDVMSVAFSSDNRQIISGSRDATIKVWNTLGECKFTLEGPEAHQAVLIGFHVSDSHQ 169
Query: 320 NNDKIVTGAMDGRINVYD 267
N IV+G+ D ++ ++D
Sbjct: 170 NTPTIVSGSWDNKVKIWD 187
>gi|1675220 (U67060) SREBP cleavage activating protein [Cricetulus griseus]
Length = 1276
Score = 36.7 bits (83), Expect = 0.16
Identities = 20/70 (28%), Positives = 33/70 (46%)
Query: 470 HEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAM 291
H G V + +C+IS G D + IWDR T + I++D L +D ++
Sbjct: 1156 HRGDVTSLTCTTSCVISSGLDDLINIWDRSTGIKLYSIQQDLGCGASLGVISDNLLVTGG 1215
Query: 290 DGRINVYDGN 261
G ++ +D N
Sbjct: 1216 QGCVSFWDLN 1225
>gi|4128204 (AF051155) G-protein beta-subunit 6 [Rattus norvegicus]
Length = 340
Score = 36.7 bits (83), Expect = 0.16
Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 3/62 (4%)
Query: 422 SGGGDCTLRIWD-RITKTQXKIIKRDNHWI--MCLDANNDKIVTGAMDGRINVYDGNGEY 252
+GG DCT RIWD R Q + I + N I +CL N +++ G G +++D ++
Sbjct: 144 TGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGTSHIWDLKTDH 203
Query: 251 KDSLL 237
+ L+
Sbjct: 204 NEQLI 208
>gi|4263521|gb|AAD15347| (AC004044) putative WD-repeat protein [Arabidopsis thaliana]
Length = 333
Score = 36.7 bits (83), Expect = 0.16
Identities = 24/69 (34%), Positives = 37/69 (52%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KI 306
GH V C+ +N I+SG D T+RIW+ T ++IK + I + N D I
Sbjct: 126 GHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLI 185
Query: 305 VTGAMDGRINVYD 267
V+ + DG ++D
Sbjct: 186 VSASHDGSCKIWD 198
Score = 36.4 bits (82), Expect = 0.21
Identities = 18/52 (34%), Positives = 33/52 (62%), Gaps = 3/52 (5%)
Query: 422 SGGGDCTLRIWD-RITKTQXKIIKRDNHWIMCLDAN--NDKIVTGAMDGRINVYD 267
S DCTLRIWD R K+++ +++ C++ N ++ IV+G+ D I +++
Sbjct: 102 SASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWE 156
>gi|1228047|dbj|BAA12111| (D83782) the KIAA0199 gene is expressed ubiquitously.; the KIAA0199
protein shows similarity to sea urchin
hydroxymethylglutalyl-CoA reductase, and retains 8
hydrophobic domains. [Homo sapiens]
Length = 1277
Score = 36.4 bits (82), Expect = 0.21
Identities = 20/70 (28%), Positives = 33/70 (46%)
Query: 470 HEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAM 291
H G V + +C+IS G D + IWDR T + I++D L +D ++
Sbjct: 1157 HRGDVTSLTCTTSCVISSGLDDLISIWDRSTGIKFYSIQQDLGCGASLGVISDNLLVTGG 1216
Query: 290 DGRINVYDGN 261
G ++ +D N
Sbjct: 1217 QGCVSFWDLN 1226
Score = 30.9 bits (68), Expect = 9.3
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 473 GHEGPVLCIKILANCII-SGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTG 297
GH G + + I ++ SGG D + +WD +T ++ + + L +++
Sbjct: 1115 GHSGAITTVYIDQTMVLASGGQDGAICLWDVLTGSRVSHVFAHRGDVTSLTCTTSCVISS 1174
Query: 296 AMDGRINVYD 267
+D I+++D
Sbjct: 1175 GLDDLISIWD 1184
>gi|1947152 (AF000265) Similar to beta transducin [Caenorhabditis elegans]
Length = 372
Score = 36.4 bits (82), Expect = 0.21
Identities = 21/69 (30%), Positives = 38/69 (54%), Gaps = 5/69 (7%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANN---DK 309
GH+G ++ +K A+ ++S G D T+R+WD T + + K + +D N
Sbjct: 102 GHKGAIMEVKFNADSSHLVSAGTDKTVRVWDMETGSCIRNFKSHTDIVNSVDVNRRGPQM 161
Query: 308 IVTGAMDGRINVYD 267
I + + DG + V+D
Sbjct: 162 ICSASDDGTVMVHD 175
>gi|3024219|sp|Q00664|NUDF_EMENI NUCLEAR MIGRATION PROTEIN NUDF >gi|758430 (U22009) NudF gene
product [Emericella nidulans]
Length = 444
Score = 36.4 bits (82), Expect = 0.21
Identities = 30/79 (37%), Positives = 43/79 (53%), Gaps = 7/79 (8%)
Query: 473 GHEGPVLCIKILA---NCIISGGGDCTLRIWDRITKTQXKIIK-RDNHWIMCLDANNDK- 309
GH+ V ++ L N +IS D TLRIWD T K+IK WI + + D
Sbjct: 199 GHDHSVSSVRFLTSNDNHLISASRDGTLRIWDVSTGFCVKVIKSATESWIRDVSPSFDGK 258
Query: 308 -IVTGAMDGRINVYD-GNGEYKDSLL 237
+V+G D I V++ + E K +LL
Sbjct: 259 WLVSGGRDQAITVWEVSSAEPKAALL 284
>gi|432494 (L26505) Met30p [Saccharomyces cerevisiae]
Length = 640
Score = 36.0 bits (81), Expect = 0.28
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH VL ++ + +G D T+ IWD T + + + + L ++ K++TG+
Sbjct: 300 GHMDGVLTLQFNYRLLFTGSYDSTIGIWDLFTGKLIRRLSGHSDGVKTLYFDDRKLITGS 359
Query: 293 MDGRINVYD 267
+D I V++
Sbjct: 360 LDKTIRVWN 368
Score = 31.7 bits (70), Expect = 5.4
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + +I+G D T+R+W+ IT + + ++ +D+ IV+G+
Sbjct: 340 GHSDGVKTLYFDDRKLITGSLDKTIRVWNYITGECISTYRGHSDSVLSVDSYQKVIVSGS 399
Query: 293 MDGRINVY 270
D + V+
Sbjct: 400 ADKTVKVW 407
>gi|730077|sp|P39014|MT30_YEAST MET30 PROTEIN >gi|1078109|pir||S49932 MET30 protein - yeast
(Saccharomyces cerevisiae) >gi|600002|emb|CAA86905|
(Z46861) Met30p [Saccharomyces cerevisiae]
Length = 640
Score = 36.0 bits (81), Expect = 0.28
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH VL ++ + +G D T+ IWD T + + + + L ++ K++TG+
Sbjct: 300 GHMDGVLTLQFNYRLLFTGSYDSTIGIWDLFTGKLIRRLSGHSDGVKTLYFDDRKLITGS 359
Query: 293 MDGRINVYD 267
+D I V++
Sbjct: 360 LDKTIRVWN 368
Score = 31.7 bits (70), Expect = 5.4
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V + +I+G D T+R+W+ IT + + ++ +D+ IV+G+
Sbjct: 340 GHSDGVKTLYFDDRKLITGSLDKTIRVWNYITGECISTYRGHSDSVLSVDSYQKVIVSGS 399
Query: 293 MDGRINVY 270
D + V+
Sbjct: 400 ADKTVKVW 407
>gi|4164425|emb|CAA22842| (AL035247) hypothetical trp-asp repeat protein [Schizosaccharomyces
pombe]
Length = 760
Score = 36.0 bits (81), Expect = 0.28
Identities = 28/89 (31%), Positives = 43/89 (47%), Gaps = 9/89 (10%)
Query: 512 MARPXXXXXXXXSGHEGPVLCIKILAN-------CIISGGGDCTLRIWDRITK--TQXKI 360
+A P +GH G + C+ LA I+SG D TLR+W + T K
Sbjct: 36 VADPFKEINYLMAGHSGRINCVCELATNSEYRSPFILSGASDKTLRLWQLEEEYFTCIKT 95
Query: 359 IKRDNHWIMCLDANNDKIVTGAMDGRINVYDGNGEYKD 246
I+ + + CL N + +V G + VY N E ++
Sbjct: 96 IELE-ATVNCLCVNENLVVCGCSNSSCIVYSWNAEQRN 132
>gi|480009|pir||S36113 LIS-1 protein - human
Length = 409
Score = 35.6 bits (80), Expect = 0.37
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IVTGAMDGRINVYD 267
I+S D TLR+WD K K + H++ LD + +VTG++D + V++
Sbjct: 352 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 407
>gi|349828 (L13387) Miller-Dieker lissencephaly protein [Homo sapiens]
Length = 288
Score = 35.6 bits (80), Expect = 0.37
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IVTGAMDGRINVYD 267
I+S D TLR+WD K K + H++ LD + +VTG++D + V++
Sbjct: 231 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 286
>gi|449693|prf||1919424A Miller-Dieker lissencephaly gene [Homo sapiens]
Length = 409
Score = 35.6 bits (80), Expect = 0.37
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IVTGAMDGRINVYD 267
I+S D TLR+WD K K + H++ LD + +VTG++D + V++
Sbjct: 352 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 407
>gi|3023956|sp|Q00808|HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1 >gi|607003 (L28125) beta
transducin-like protein [Podospora anserina]
Length = 1356
Score = 35.6 bits (80), Expect = 0.37
Identities = 14/54 (25%), Positives = 31/54 (56%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWI--MCLDANNDKIVTGAMDGRINVYD 267
+ SG D T++IWD + T + ++ W+ + + ++ +G++DG I ++D
Sbjct: 1108 VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWD 1163
Score = 34.0 bits (76), Expect = 1.1
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWI--MCLDANNDKIVTGAMDGRINVYD 267
+ SG D T++IWD + T + ++ W+ + + ++ +G+ D I ++D
Sbjct: 1192 VASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWD 1247
Score = 33.6 bits (75), Expect = 1.4
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIK--RDNHWIMCLDANNDKI 306
GH VL + + + SG GD T++IWD + T + ++ + W + + ++
Sbjct: 965 GHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRV 1024
Query: 305 VTGAMDGRINVYD 267
+G+ D I ++D
Sbjct: 1025 ASGSDDKTIKIWD 1037
Score = 32.5 bits (72), Expect = 3.2
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWI--MCLDANNDKI 306
GH G V + + + SG D T++IWD + T + ++ W+ + + ++
Sbjct: 1007 GHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRV 1066
Query: 305 VTGAMDGRINVYD 267
+G+ D I ++D
Sbjct: 1067 ASGSDDHTIKIWD 1079
Score = 31.7 bits (70), Expect = 5.4
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWI--MCLDANNDKIVTGAMDGRINVYD 267
+ SG D T++IWD + T + ++ W+ + + ++ +G+ D I ++D
Sbjct: 1150 VASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWD 1205
>gi|2739374 (AC002505) hypothetical protein [Arabidopsis thaliana]
Length = 465
Score = 35.6 bits (80), Expect = 0.37
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 2/71 (2%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHW--IMCLDANNDKIVT 300
GH+ VLC+++ + + SG D T+ +W R + H + CL D+ +
Sbjct: 336 GHKLAVLCLEVAGSLVFSGSADKTICVWKRDGNIHTCLSVLTGHTGPVKCLAVEADREAS 395
Query: 299 GAMDGRINVYDGN 261
D + VY G+
Sbjct: 396 ERRDKKWIVYSGS 408
>gi|1170793|sp|P43033|LIS1_BOVIN PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (PAF
ACETYLHYDROLASE 45 KD SUBUNIT) (PAF-AH 45 KD SUBUNIT)
(PAF-AH ALPHA) (LISSENCEPHALY-1 PROTEIN)
>gi|551618|dbj|BAA06305| (D30615) PAF acetylhydrolase 45
kDa subunit [Bos taurus] >gi|745065|prf||2015391A
platelet-activating factor acetylhydrolase [Bos taurus]
Length = 410
Score = 35.6 bits (80), Expect = 0.37
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IVTGAMDGRINVYD 267
I+S D TLR+WD K K + H++ LD + +VTG++D + V++
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>gi|4557741|oth|NP_000421|PPAFAH1B1 platelet-activating factor acetylhydrolase alpha subunit
>gi|1170794|sp|P43034|LIS1_HUMAN PLATELET-ACTIVATING
FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (PAF
ACETYLHYDROLASE 45 KD SUBUNIT) (PAF-AH 45 KD SUBUNIT)
(PAF-AH ALPHA) (LISSENCEPHALY-1 PROTEIN) >gi|349824
(L13385) Miller-Dieker lissencephaly protein [Homo
sapiens] >gi|349826 (L13386) Miller-Dieker lissencephaly
protein [Homo sapiens] >gi|1850956 (U72342) platelet
activating factor acetylhydrolase, brain isoform, 45 kDa
subunit [Homo sapiens]
Length = 410
Score = 35.6 bits (80), Expect = 0.37
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IVTGAMDGRINVYD 267
I+S D TLR+WD K K + H++ LD + +VTG++D + V++
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>gi|1170795|sp|P43035|LIS1_MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (PAF
ACETYLHYDROLASE 45 KD SUBUNIT) (PAF-AH 45 KD SUBUNIT)
(PAF-AH ALPHA) (LISSENCEPHALY-1 PROTEIN)
>gi|1083066|pir||S48052 platelet-activating factor
acetylhydrolase 45K chain - bovine >gi|2072303 (U95116)
lissencephaly-1 protein [Mus musculus] >gi|2501861
(AF016049) platelet-activating factor acetylhydrolase
beta subunit [Rattus norvegicus] >gi|3660462 (U95120)
platelet-activating factor acetylhydrolase 45kD subunit
[Mus musculus]
Length = 410
Score = 35.6 bits (80), Expect = 0.37
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IVTGAMDGRINVYD 267
I+S D TLR+WD K K + H++ LD + +VTG++D + V++
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>gi|3850079|emb|CAA21906| (AL033389) WD-repeat protein [Schizosaccharomyces pombe]
Length = 612
Score = 35.6 bits (80), Expect = 0.37
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 17/73 (23%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIW--------DRITK--TQXKIIK--RDNHW- 339
GHEGPVLC+ + + I SGG D T+R W D I+K T I + D W
Sbjct: 337 GHEGPVLCVCVPKATHHIFSGGHDGTIRCWSLPANQTSDSISKILTGSTIFQGHEDCVWE 396
Query: 338 IMCLDA--NNDKIVTGAMDGRINVYDGNGE 255
+ C + NN +++ + DG + + GE
Sbjct: 397 LFCHEVKDNNPILLSLSSDGTVRGWKYTGE 426
>gi|3122623|sp|O13615|PRL1_SCHPO PRL1/PRL2-LIKE PROTEIN >gi|2257507|dbj|BAA21403| (AB004535) PRL1
[Schizosaccharomyces pombe]
Length = 473
Score = 34.8 bits (78), Expect = 0.63
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDAN--NDKI 306
GH V +K+ + +++ G D R+WD T+ ++ + L + ++
Sbjct: 245 GHLSGVYALKLHPTLDVLVTAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDPQV 304
Query: 305 VTGAMDGRINVYD 267
VTG+MD I ++D
Sbjct: 305 VTGSMDSTIRLWD 317
>gi|306785 (M16538) G protein beta subunit [Homo sapiens]
Length = 340
Score = 34.8 bits (78), Expect = 0.63
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD--ANNDKIV 303
GH G + C + L N II+ GD T +WD T Q + +M L N V
Sbjct: 141 GHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPNGRTFV 200
Query: 302 TGAMDGRINVYD 267
+GA D I ++D
Sbjct: 201 SGACDASIKLWD 212
>gi|1170675|sp|P42527|KMHA_DICDI MYOSIN HEAVY CHAIN KINASE A (MHCK A) >gi|1076834|pir||A55532
myosin-heavy-chain kinase (EC 2.7.1.129) A - slime mold
(Dictyostelium discoideum) >gi|608520 (U16856) myosin
heavy chain kinase A [Dictyostelium discoideum]
Length = 1146
Score = 34.8 bits (78), Expect = 0.63
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 1/69 (1%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRIT-KTQXKIIKRDNHWIMCLDANNDKIVTG 297
GH V + + SG D ++++WD T + I K + + CL N++I++
Sbjct: 1073 GHWNSVSSCVVKDRYLYSGSEDNSIKVWDLDTLECVYTIPKSHSLGVKCLMVFNNQIISA 1132
Query: 296 AMDGRINVYD 267
A DG I V++
Sbjct: 1133 AFDGSIKVWE 1142
>gi|4138841 (AF091120) G-protein beta subunit GPB1 [Filobasidiella neoformans]
Length = 352
Score = 34.8 bits (78), Expect = 0.63
Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 4/68 (5%)
Query: 470 HEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD--ANNDKIV 303
H G V+CI + AN +SG D T ++WD T + I + N D
Sbjct: 195 HTGDVMCISLAPNANLFVSGACDATAKVWDIRTGKAVQTFTGHESDINAVQFFPNGDAFA 254
Query: 302 TGAMDGRINVYD 267
TG+ D ++D
Sbjct: 255 TGSDDASCKLFD 266
Score = 31.3 bits (69), Expect = 7.1
Identities = 20/68 (29%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Query: 470 HEGPVLCIKILANC-IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVT 300
H G + C + + + I++ GD T +WD T+ +MC L N + V+
Sbjct: 154 HSGYLSCCRFINDRQIVTSSGDMTCMLWDIEQGTRTMEFNDHTGDVMCISLAPNANLFVS 213
Query: 299 GAMDGRINVYD 267
GA D V+D
Sbjct: 214 GACDATAKVWD 224
>gi|3123027|sp|O35828|W70T_RAT 70 KD WD-REPEAT TUMOR-SPECIFIC ANTIGEN >gi|2505957|emb|CAA75339|
(Y15054) 70 kD tumor-specific antigen [Rattus
norvegicus]
Length = 443
Score = 34.4 bits (77), Expect = 0.82
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 473 GHEGPVLCIK---ILANCIISGGGDCTLRIWDRITKTQXKIIK--RDNHWIMCLDANNDK 309
GH + ++ + A+ + S D T+RIWD +T+ ++ +D + + + +
Sbjct: 111 GHTEKIYSLRFHPLAADVLASSSYDLTIRIWDLQARTEQLRLQGHQDQIFSLAWSPDGKQ 170
Query: 308 IVTGAMDGRINVYD 267
+ T DGR+ VYD
Sbjct: 171 LATVCKDGRVRVYD 184
>gi|3880902|emb|CAA21549| (AL032627) predicted using Genefinder; similar to WD domain, G-beta
repeat [Caenorhabditis elegans]
Length = 386
Score = 34.4 bits (77), Expect = 0.82
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 473 GHEGPVLCIKILANC-IISGGGDCTLRIWDRITKTQXKIIKR-DNHWIMCLDANNDKIVT 300
GHE V C++ L I+SG DC++ +WD T+ + +K + + + I++
Sbjct: 275 GHEKGVNCVEFLTGGRIVSGSDDCSICVWDIQTQKCIETLKNAHKNNVTFVTPFKTWIIS 334
Query: 299 GAMDGRINVYD 267
GA D + +++
Sbjct: 335 GAEDSTVKIWN 345
>gi|2494901|sp|P78706|RCO1_NEUCR TRANSCRIPTIONAL REPRESSOR RCO-1 >gi|1698504 (U57061) rco-1 gene
product [Neurospora crassa]
Length = 604
Score = 34.4 bits (77), Expect = 0.82
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 3/78 (3%)
Query: 473 GHEGPVLCIKILAN--CIISGGGDCTLRIWDRITKTQXKIIK-RDNHWIMCLDANNDKIV 303
GHE + + + I SG GD T+R+WD T ++ D + + + +
Sbjct: 384 GHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQFVA 443
Query: 302 TGAMDGRINVYDGNGEYKDSL 240
G++D + V+D G + L
Sbjct: 444 AGSLDKSVRVWDMRGYLAERL 464
>gi|2494900|sp|P56094|TUP1_KLULA TRANSCRIPTIONAL REPRESSOR TUP1 >gi|2245632 (AF005740)
transcriptional repressor TUP1 [Kluyveromyces lactis]
Length = 682
Score = 34.4 bits (77), Expect = 0.82
Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 4/71 (5%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIK-RDNHWIMCLDANNDK-I 306
GHE + + N ++SG GD T+RIWD T T + D + + K I
Sbjct: 446 GHEQDIYSLDYFPSGNKLVSGSGDRTVRIWDLTTGTCSLTLSIEDGVTTVAVSPGEGKFI 505
Query: 305 VTGAMDGRINVYDGN 261
G++D + V+D +
Sbjct: 506 AAGSLDRTVRVWDSD 520
>gi|544075|sp|P35605|COPP_BOVIN COATOMER BETA' SUBUNIT (BETA'-COAT PROTEIN) (BETA'-COP) (P102)
>gi|486768|pir||S35312 coatomer complex chain beta' -
bovine >gi|312732|emb|CAA51285| (X72756) beta prime cop
[Bos taurus]
Length = 906
Score = 34.4 bits (77), Expect = 0.82
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 473 GHEGPVLCIKILAN----CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK- 309
GHE V CI + +ISG D ++IWD KT + ++ + C + +
Sbjct: 183 GHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELP 242
Query: 308 -IVTGAMDGRINVYDGNGEYKDSLL 237
I+TG+ DG + ++ + +S L
Sbjct: 243 IIITGSEDGTVRIWHSSTYRLESTL 267
>gi|486784|pir||S35342 Golgi-associated particle 102K chain - human
Length = 906
Score = 34.4 bits (77), Expect = 0.82
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 473 GHEGPVLCIKILAN----CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK- 309
GHE V CI + +ISG D ++IWD KT + ++ + C + +
Sbjct: 183 GHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELP 242
Query: 308 -IVTGAMDGRINVYDGNGEYKDSLL 237
I+TG+ DG + ++ + +S L
Sbjct: 243 IIITGSEDGTVRIWHSSTYRLESTL 267
>gi|544076|sp|P35606|COPP_HUMAN COATOMER BETA' SUBUNIT (BETA'-COAT PROTEIN) (BETA'-COP) (P102)
>gi|298097|emb|CAA49900| (X70476) subunit of coatomer
complex [Homo sapiens]
Length = 906
Score = 34.4 bits (77), Expect = 0.82
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 473 GHEGPVLCIKILAN----CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK- 309
GHE V CI + +ISG D ++IWD KT + ++ + C + +
Sbjct: 183 GHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELP 242
Query: 308 -IVTGAMDGRINVYDGNGEYKDSLL 237
I+TG+ DG + ++ + +S L
Sbjct: 243 IIITGSEDGTVRIWHSSTYRLESTL 267
>gi|1730215|sp|P54313|GBB2_RAT GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 2
(TRANSDUCIN BETA CHAIN 2) >gi|984555 (U34959) G protein
beta 2 subunit [Rattus norvegicus]
Length = 340
Score = 34.4 bits (77), Expect = 0.82
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L N II+ GD T +WD T Q + +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVDFAGHSGDVMSLSLAPDGRTFV 200
Query: 302 TGAMDGRINVYD 267
+GA D I ++D
Sbjct: 201 SGACDASIKLWD 212
>gi|3170523 (AF053883) coatomer alpha subunit [Emericella nidulans]
Length = 1205
Score = 34.4 bits (77), Expect = 0.82
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMC--LDANNDKIVTGAMDGRINVYDGNG 258
I+S D T+RIW+ ++ + NH++MC D I + ++D + ++D +G
Sbjct: 108 ILSASDDQTIRIWNWQNRSLICTMTGHNHYVMCAQFHPTEDLIASASLDQSVRIWDISG 166
>gi|4099537 (U88324) G protein beta1 subunit [Rattus norvegicus]
Length = 340
Score = 34.4 bits (77), Expect = 0.82
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N I++ GD T +WD T Q +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 302 TGAMDGRINVYD 267
+GA D + ++D
Sbjct: 201 SGACDASVKLWD 212
>gi|4495124|emb|CAB38691| (AL035675) WD repeat protein; human U5 SNRNP-specific-like
[Schizosaccharomyces pombe]
Length = 340
Score = 34.4 bits (77), Expect = 0.82
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKIL---ANCIISGGGDCTLRIWDRITKTQXKIIKRDNH-WIMCLDANNDKI 306
GH G V + +L + + S DCT+++WD +K K I+ + + ++
Sbjct: 133 GHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQQGTQV 192
Query: 305 VTGAMDGRINVYD 267
G +DG I ++D
Sbjct: 193 FIGGIDGAIKIWD 205
>gi|110808|pir||A40963 phospholipase A2-activating protein - mouse >gi|200395 (M57958)
phospholipase A-2-activating protein [Mus musculus]
Length = 325
Score = 34.4 bits (77), Expect = 0.82
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 2/73 (2%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVT 300
GH + I + N ++ D +LRIW Q + + W C+ N D IV
Sbjct: 172 GHTNYIYSISVFPNSKDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLENGD-IVV 230
Query: 299 GAMDGRINVYDGNGE 255
GA DG I V+ + E
Sbjct: 231 GASDGIIRVFTESEE 245
>gi|3122602|sp|P97865|PEX7_MOUSE PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR (PTS2 RECEPTOR) (PEROXIN-7)
>gi|1890657 (U69171) peroxisomal PTS2 receptor [Mus
musculus]
Length = 318
Score = 34.4 bits (77), Expect = 0.82
Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 440 LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD---ANNDKIVTGAMDGRINVY 270
+ C S GD TLRIWD T +I I+ D N + +VTGA+D + +
Sbjct: 162 IPGCFASASGDQTLRIWDVKTTGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGW 221
Query: 269 D 267
D
Sbjct: 222 D 222
>gi|2507097|sp|P27612|PLAP_MOUSE PHOSPHOLIPASE A-2-ACTIVATING PROTEIN (PLAP)
Length = 646
Score = 34.0 bits (76), Expect = 1.1
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVT 300
GH + I + N ++ D +LRIW Q + + W C+ N D IV
Sbjct: 172 GHTNYIYSISVFPNSKDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLENGD-IVV 230
Query: 299 GAMDGRINVY 270
GA DG I V+
Sbjct: 231 GASDGIIRVF 240
>gi|3123143|sp|Q23256|YH92_CAEEL HYPOTHETICAL 54.5 KD TRP-ASP REPEATS CONTAINING PROTEIN ZC302.2 IN
CHROMOSOME V >gi|3881391|emb|CAA98293| (Z73978)
predicted using Genefinder; similar to guanine
nucleotide binding protein [Caenorhabditis elegans]
Length = 501
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KI 306
GH V C ++ I S G D T+R+WD T K I + I + N+D +
Sbjct: 295 GHTNYVFCCSFNPQSSLIASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTM 354
Query: 305 VTGAMDGRINVYD 267
T + DG I V+D
Sbjct: 355 ATSSYDGCIRVWD 367
>gi|121009|sp|P11017|GBB2_BOVIN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 2
(TRANSDUCIN BETA CHAIN 2) >gi|71872|pir||RGBOB2
GTP-binding regulatory protein beta-2 chain - bovine
(fragment) >gi|163113 (M16480) guanine
nucleotide-binding regulatory protein-beta-2 subunit
[Bos taurus] >gi|163785 (M36431) transducin beta-2
subunit [Bos taurus]
Length = 326
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L N II+ GD T +WD T Q + +M L D V
Sbjct: 127 GHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFV 186
Query: 302 TGAMDGRINVYD 267
+GA D I ++D
Sbjct: 187 SGACDASIKLWD 198
>gi|1346107|sp|P49178|GBB_MAIZE GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT >gi|557696 (U12233)
GTP binding protein beta subunit [Zea mays]
Length = 380
Score = 34.0 bits (76), Expect = 1.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 473 GHEGPVLCIKILA--NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM-CLDA-NNDKI 306
GH G V + N I+S D L +W+ +T + IK W+M C A N +
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMACAFAPNGQSV 123
Query: 305 VTGAMDGRINVYDGNGE 255
G +D ++++ N +
Sbjct: 124 ACGGLDSACSIFNLNSQ 140
>gi|3023843|sp|Q40687|GBB_ORYSA GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT
>gi|1143525|emb|CAA61889| (X89737) g protein B subunit
[Oryza sativa]
Length = 380
Score = 34.0 bits (76), Expect = 1.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 473 GHEGPVLCIKILA--NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM-CLDA-NNDKI 306
GH G V + N I+S D L +W+ +T + IK W+M C A N +
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMTCAFAPNGQSV 123
Query: 305 VTGAMDGRINVYDGNGE 255
G +D ++++ N +
Sbjct: 124 ACGGLDSACSIFNLNSQ 140
>gi|1932938 (U80191) TFIID subunit TAFII100 [Homo sapiens]
Length = 800
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDKI 306
GH V C + +N + +G D T+R+WD + +I I L N +
Sbjct: 625 GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFL 684
Query: 305 VTGAMDGRINVYD-GNG 258
TGA DGR+ ++D G+G
Sbjct: 685 ATGATDGRVLLWDIGHG 701
>gi|121010|sp|P11016|GBB2_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 2
(TRANSDUCIN BETA CHAIN 2) >gi|71871|pir||RGHUB2
GTP-binding regulatory protein beta-2 chain - human
>gi|339935 (M36429) transducin beta-2 subunit [Homo
sapiens] >gi|386751 (M16514) guanine nucleotide-binding
regulatory protein-beta-2 subunit [Homo sapiens]
>gi|3135310 (AF053356) GNB2 [Homo sapiens]
Length = 340
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L N II+ GD T +WD T Q + +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFV 200
Query: 302 TGAMDGRINVYD 267
+GA D I ++D
Sbjct: 201 SGACDASIKLWD 212
>gi|71878|pir||RGFFB GTP-binding regulatory protein beta chain - fruit fly (Drosophila
melanogaster)
Length = 346
Score = 34.0 bits (76), Expect = 1.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 425 ISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKIVTGAMDGRINVYDGN 261
++G D L IWD T + +II + W+M + + + G MD + VYD N
Sbjct: 75 VTGSLDGKLIIWDTWTANKVQIIPLRSAWVMTVAFSPSGNFVACGGMDNQCTVYDVN 131
>gi|1730214|sp|P54312|GBB2_MOUSE GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 2
(TRANSDUCIN BETA CHAIN 2) >gi|984551 (U34960) G protein
beta 2 subunit [Mus musculus]
Length = 340
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L N II+ GD T +WD T Q + +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFV 200
Query: 302 TGAMDGRINVYD 267
+GA D I ++D
Sbjct: 201 SGACDASIKLWD 212
>gi|1732075 (U75309) TBP-associated factor [Homo sapiens]
Length = 801
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDKI 306
GH V C + +N + +G D T+R+WD + +I I L N +
Sbjct: 626 GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFL 685
Query: 305 VTGAMDGRINVYD-GNG 258
TGA DGR+ ++D G+G
Sbjct: 686 ATGATDGRVLLWDIGHG 702
>gi|163111 (M16539) G protein beta subunit [Bos taurus]
Length = 215
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L N II+ GD T +WD T Q + +M L D V
Sbjct: 40 GHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFV 99
Query: 302 TGAMDGRINVYD 267
+GA D I ++D
Sbjct: 100 SGACDASIKLWD 111
>gi|2494905|sp|Q12024|YTM1_YEAST MICROTUBULE-ASSOCIATED PROTEIN YTM1 >gi|2132107|pir||S67174
hypothetical protein YOR272w - yeast (Saccharomyces
cerevisiae) >gi|1279699|emb|CAA61778| (X89633)
hypothetical protein [Saccharomyces cerevisiae]
>gi|1420610|emb|CAA99497| (Z75180) ORF YOR272w
[Saccharomyces cerevisiae] >gi|1928989 (U92821)
microtubule-associated protein [Saccharomyces
cerevisiae]
Length = 460
Score = 34.0 bits (76), Expect = 1.1
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 473 GHEGPVLCIKILANC-IISGGGDCTLRIW 390
GH GP+ +K ++N ++S G D TLR+W
Sbjct: 142 GHSGPIRAVKYISNTRLVSAGNDRTLRLW 170
>gi|3024689|sp|Q15542|T2D4_HUMAN TRANSCRIPTION INITIATION FACTOR TFIID 100 KD SUBUNIT (TAFII-100)
(TAFII100) >gi|1491718|emb|CAA64777| (X95525) hTAFII100
[Homo sapiens]
Length = 799
Score = 34.0 bits (76), Expect = 1.1
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDKI 306
GH V C + +N + +G D T+R+WD + +I I L N +
Sbjct: 625 GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFL 684
Query: 305 VTGAMDGRINVYD-GNG 258
TGA DGR+ ++D G+G
Sbjct: 685 ATGATDGRVLLWDIGHG 701
>gi|1709554|sp|P39946|PAC1_YEAST PAC1 PROTEIN >gi|2132375|pir||S67166 PAC1 protein - yeast
(Saccharomyces cerevisiae) >gi|1279696|emb|CAA61775|
(X89633) hypothetical protein [Saccharomyces cerevisiae]
>gi|1330321 (U16827) Pac1p [Saccharomyces cerevisiae]
>gi|1420604|emb|CAA99493| (Z75177) ORF YOR269w
[Saccharomyces cerevisiae]
Length = 494
Score = 33.6 bits (75), Expect = 1.4
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 7/72 (9%)
Query: 473 GHEGPVLCIKILANC----IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKI 306
GHE V +KI I S D T++IWD K + + W+ +D D I
Sbjct: 251 GHEHIVSAVKIWQKNNDVHIASCSRDQTVKIWDFHNGWSLKTFQPHSQWVRSIDVLGDYI 310
Query: 305 VTGAMDGRINVY---DGNG 258
++G+ D + + GNG
Sbjct: 311 ISGSHDTTLRLTHWPSGNG 329
>gi|3023838|sp|P79959|GBB1_XENLA GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 1
(TRANSDUCIN BETA CHAIN 1) (XGBETA1)
>gi|1729803|emb|CAA60532| (X86969) beta 1 subunit of
heterotrimeric GTP-binding protein [Xenopus laevis]
Length = 340
Score = 33.6 bits (75), Expect = 1.4
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N II+ GD T +WD T Q +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDSRCFV 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASAKLWD 212
>gi|2832331|emb|CAA04687| (AJ001340) U3 snoRNP associated 55 kDa protein [Homo sapiens]
Length = 475
Score = 33.6 bits (75), Expect = 1.4
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 473 GHEGPVLCIKILAN--CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD-ANNDKIV 303
GH+ V + L+ C+ +GG D T+R+W +I + + I C+ N + +V
Sbjct: 281 GHQDAVAALDALSRECCVTAGGRDGTVRVW-KIPEESQLVFYGHQGSIDCIHLINEEHMV 339
Query: 302 TGAMDGRINVY 270
+GA DG + ++
Sbjct: 340 SGADDGSVALW 350
>gi|3702321 (AC005397) putative TGF-beta receptor interacting protein
[Arabidopsis thaliana]
Length = 328
Score = 33.2 bits (74), Expect = 1.8
Identities = 19/58 (32%), Positives = 34/58 (57%), Gaps = 8/58 (13%)
Query: 440 LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWI--------MCLDANNDKIVTGAMDG 285
L I+SGG D +RIWD T K++K+ + + +C A++ +TG++D
Sbjct: 159 LNQTIVSGGEDKVIRIWDAET---GKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDK 215
Query: 284 RINVYD 267
++D
Sbjct: 216 TAKLWD 221
>gi|2257500|dbj|BAA21396| (AB004535) G protein beta subunit [Schizosaccharomyces pombe]
>gi|4185314 (AF092102) G-protein beta subunit git5p
[Schizosaccharomyces pombe]
Length = 305
Score = 33.2 bits (74), Expect = 1.8
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 473 GHEGPVLCIKILANC-IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD---ANNDKI 306
GH G V C K + + +++G GD T WD ++K I+ LD +N +
Sbjct: 104 GHAGFVSCCKYVDDGHLLTGSGDKTCMFWDIEQAKAISVLKGHEMDIVSLDFLPSNPNLF 163
Query: 305 VTGAMDGRINVYDGNGEY 252
VTG D ++D Y
Sbjct: 164 VTGGCDKLAKLWDLRAAY 181
>gi|2829890 (AC002396) Hypothetical protein [Arabidopsis thaliana]
Length = 415
Score = 33.2 bits (74), Expect = 1.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDR 384
GH ++C+ + ++ ++SG D +LR+W R
Sbjct: 326 GHRKAIMCLAVASDLVLSGSADKSLRVWRR 355
>gi|3122136|sp|Q10282|GBB_SCHPO GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT >gi|531024 (L28061)
G protein beta subunit Gpb1 [Schizosaccharomyces pombe]
Length = 317
Score = 33.2 bits (74), Expect = 1.8
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 473 GHEGPVLCIKILANC-IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD---ANNDKI 306
GH G V C K + + +++G GD T WD ++K I+ LD +N +
Sbjct: 116 GHAGFVSCCKYVDDGHLLTGSGDKTCMFWDIEQAKAISVLKGHEMDIVSLDFLPSNPNLF 175
Query: 305 VTGAMDGRINVYDGNGEY 252
VTG D ++D Y
Sbjct: 176 VTGGCDKLAKLWDLRAAY 193
>gi|339937 (M36430) transducin beta-1 subunit [Homo sapiens]
Length = 247
Score = 32.8 bits (73), Expect = 2.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N I++ GD T +WD T Q +M L D V
Sbjct: 48 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 107
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 108 SGACDASAKLWD 119
>gi|3122317|sp|P90648|KMHB_DICDI MYOSIN HEAVY CHAIN KINASE B (MHCK B) >gi|1903458 (U90946) myosin
heavy chain kinase B [Dictyostelium discoideum]
Length = 732
Score = 32.8 bits (73), Expect = 2.4
Identities = 17/69 (24%), Positives = 32/69 (45%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH+ PV + + + SG D T+++WD T ++ + L + + +G+
Sbjct: 540 GHDKPVHTVLLNDKYLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYLFSGS 599
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 600 NDKTIKVWD 608
Score = 32.1 bits (71), Expect = 4.2
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GHEGPV I + SG D ++++WD ++ + + + N+ + +G+
Sbjct: 500 GHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDKYLFSGS 559
Query: 293 MDGRINVYD 267
D I V+D
Sbjct: 560 SDKTIKVWD 568
Score = 31.3 bits (69), Expect = 7.1
Identities = 17/69 (24%), Positives = 32/69 (45%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGA 294
GH V I IL + SG D T+R+W+ + ++ + W+ + + + T +
Sbjct: 620 GHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLRGHDRWVEHMVICDKLLFTAS 679
Query: 293 MDGRINVYD 267
D I ++D
Sbjct: 680 DDNTIKIWD 688
Score = 30.9 bits (68), Expect = 9.3
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 470 HEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTGAM 291
H V + I + SG D T+++WD T +K W+ + + +G+
Sbjct: 581 HARAVKTLCISGQYLFSGSNDKTIKVWDLKTFRCNYTLKGHTKWVTTICILGTNLYSGSY 640
Query: 290 DGRINVYD 267
D I V++
Sbjct: 641 DKTIRVWN 648
>gi|1848277 (U86136) telomerase-associated protein TP-1 [Homo sapiens]
Length = 2627
Score = 32.8 bits (73), Expect = 2.4
Identities = 24/69 (34%), Positives = 38/69 (54%), Gaps = 9/69 (13%)
Query: 473 GHEGPVLCIKILAN--CIISGGGDCTLRIWD-RITKTQXKI-----IKRDNHWIM-CLDA 321
GHEGPV C + + +GG D +L WD R KT I RD W+ C
Sbjct: 2059 GHEGPVSCCSFSTDGGSLATGGRDRSLLCWDVRTPKTPVLIHSFPACHRD--WVTGCAWT 2116
Query: 320 NNDKIVTGAMDGRINVYD 267
++ +++ + DG + ++D
Sbjct: 2117 KDNLLISCSSDGSVGLWD 2134
>gi|3387984 (AF070603) beta-subunit signal transducing proteins GS/GI [Homo
sapiens]
Length = 207
Score = 32.8 bits (73), Expect = 2.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N I++ GD T +WD T Q +M L D V
Sbjct: 8 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 67
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 68 SGACDASAKLWD 79
>gi|3702320 (AC005397) putative TGF-beta receptor interacting protein
[Arabidopsis thaliana]
Length = 328
Score = 32.8 bits (73), Expect = 2.4
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 440 LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWI--------MCLDANNDKIVTGAMDG 285
L I+SGG D +RIWD T K++K+ + + +C A++ +TG+ D
Sbjct: 159 LNQTIVSGGEDAAIRIWDAET---GKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDK 215
Query: 284 RINVYD 267
++D
Sbjct: 216 TAKLWD 221
>gi|1175392|sp|Q09715|YA3A_SCHPO HYPOTHETICAL 67.3 KD TRP-ASP REPEATS CONTAINING PROTEIN C18B11.10
IN CHROMOSOME I >gi|2130291|pir||S58306 hypothetical
protein SPAC18B11.10 - fission yeast
(Schizosaccharomyces pombe) >gi|929896|emb|CAA90594|
(Z50728) putative trp-asp repeat protein related to tup1
[Schizosaccharomyces pombe]
Length = 614
Score = 32.8 bits (73), Expect = 2.4
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 473 GHEGPVLCIKILAN--CIISGGGDCTLRIWDRIT-KTQXKIIKRDNHWIMCLDANNDKIV 303
GHE + + N I+SG GD T R+WD T + K+ + + + N+ I
Sbjct: 400 GHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVTAIAISPNDQFIA 459
Query: 302 TGAMDGRINVYDGNGEYKDSL 240
G++D I V+ +G + L
Sbjct: 460 VGSLDQIIRVWSVSGTLVERL 480
>gi|121008|sp|P04901|GBB1_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 1
(TRANSDUCIN BETA CHAIN 1) >gi|71869|pir||RGHUB1
GTP-binding regulatory protein beta-1 chain - human
>gi|71870|pir||RGBOB1 GTP-binding regulatory protein
beta-1 chain - bovine >gi|2137307|pir||JC5057 G protein
beta 1 - mouse >gi|1942392|pdb|1GG2|B Chain B, G Protein
Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2
With Gdp Bound >gi|1942398|pdb|1GP2|B Chain B, G Protein
Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound
>gi|2098450|pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The
Heterotrimeric G-Protein Transducin
>gi|2098452|pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The
Heterotrimeric G-Protein Transducin
>gi|2098454|pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The
Heterotrimeric G-Protein Transducin
>gi|2098456|pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The
Heterotrimeric G-Protein Transducin
>gi|31669|emb|CAA28207| (X04526) beta subunit (AA 1-340)
[Homo sapiens] >gi|163783 (M13236) transducin beta
subunit [Bos taurus] >gi|868169 (U29055) G protein beta
36 subunit [Mus musculus] >gi|1770163|emb|CAA99446|
(Z75134) rod transducin [Canis familiaris]
Length = 340
Score = 32.8 bits (73), Expect = 2.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N I++ GD T +WD T Q +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASAKLWD 212
>gi|1942174|pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits >gi|2392720|pdb|2TRC|B Chain
B, PhosducinTRANSDUCIN BETA-Gamma Complex
>gi|4558030|pdb|1B9X|A Chain A, Structural Analysis Of
Phosducin And Its Phosphorylation-Regulated Interaction
With Transducin >gi|4558033|pdb|1B9Y|A Chain A,
Structural Analysis Of Phosducin And Its
Phosphorylation-Regulated Interaction With Transducin
Beta-Gamma >gi|814|emb|CAA26875| (X03073) put.
transducin beta-subunit (aa 1-340) [Bos taurus]
Length = 340
Score = 32.8 bits (73), Expect = 2.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N I++ GD T +WD T Q +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASAKLWD 212
>gi|3023852|sp|Q01369|GBLP_NEUCR GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
(CROSS-PATHWAY CONTROL WD-REPEAT PROTEIN CPC-2)
>gi|1362527|pir||S57839 CPC2 protein - Neurospora crassa
>gi|971566|emb|CAA57460| (X81875) CPC2 protein
[Neurospora crassa]
Length = 316
Score = 32.8 bits (73), Expect = 2.4
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 10/65 (15%)
Query: 443 ILANCIISGGG--------DCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDKIVTGA 294
I+++C+IS G D TLR+W+ T T + + ++ + A+N +IV+G+
Sbjct: 65 IVSDCVISSDGAYALSASWDKTLRLWELSTGTTTRRFVGHTNDVLSVSFSADNRQIVSGS 124
Query: 293 MDGRINVYDGNGEYK 249
D I +++ G+ K
Sbjct: 125 RDRTIKLWNTLGDCK 139
Score = 32.5 bits (72), Expect = 3.2
Identities = 19/69 (27%), Positives = 38/69 (54%), Gaps = 7/69 (10%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDN-HWIMCL----DANN 315
GH VL + A+ I+SG D T+++W+ + + I ++ + W+ C+ + N
Sbjct: 103 GHTNDVLSVSFSADNRQIVSGSRDRTIKLWNTLGDCKFTITEKGHTEWVSCVRFSPNPQN 162
Query: 314 DKIVTGAMDGRINVYD 267
IV+ D + V++
Sbjct: 163 PVIVSSGWDKLVKVWE 178
>gi|1730213|sp|P54311|GBB1_RAT GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 1
(TRANSDUCIN BETA CHAIN 1) >gi|984553 (U34958) G protein
beta 1 subunit [Rattus norvegicus]
Length = 340
Score = 32.8 bits (73), Expect = 2.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N I++ GD T +WD T Q +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASAKLWD 212
>gi|2494899|sp|P56093|TUP1_CANAL TRANSCRIPTIONAL REPRESSOR TUP1 >gi|2245634 (AF005741)
transcriptional repressor TUP1 [Candida albicans]
Length = 514
Score = 32.8 bits (73), Expect = 2.4
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWD-RITKTQXKIIKRDNHWIMCLDANNDKIV 303
GHE + + + ++SG GD ++RIWD R ++ + D + + + I
Sbjct: 297 GHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDLRTSQCSLTLSIEDGVTTVAVSPDGKLIA 356
Query: 302 TGAMDGRINVYD 267
G++D + V+D
Sbjct: 357 AGSLDRTVRVWD 368
>gi|3875822|emb|CAA88948| (Z49127) similar to guanine nucleotide-binding protein beta
subunit; cDNA EST EMBL:D73898 comes from this gene; cDNA
EST EMBL:D71249 comes from this gene; cDNA EST
EMBL:C12218 comes from this gene; cDNA EST yk211a1.5
comes from...
Length = 340
Score = 32.8 bits (73), Expect = 2.4
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L N I++ GD T +WD T Q +M L + D +
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFRTFI 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASAKLWD 212
>gi|121013|sp|P17343|GBB1_CAEEL GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT 1
>gi|71875|pir||RGKWB GTP-binding regulatory protein beta
chain - Caenorhabditis elegans >gi|6643|emb|CAA35532|
(X17497) G-protein [Caenorhabditis elegans]
Length = 340
Score = 32.8 bits (73), Expect = 2.4
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L N I++ GD T +WD T Q +M L + D +
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFRTFI 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASAKLWD 212
>gi|4139469|pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.8 bits (73), Expect = 2.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--IV 303
GH G + C + L N I++ GD T +WD T Q +M L D V
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASAKLWD 212
>gi|4507703|oth|NP_003301|PTSSC1 tumor suppressing subtransferable candidate 1
>gi|2655037|gb|AAC51911| (AF019952) tumor suppressing
STF cDNA 1 [Homo sapiens]
Length = 387
Score = 32.8 bits (73), Expect = 2.4
Identities = 17/54 (31%), Positives = 31/54 (56%), Gaps = 4/54 (7%)
Query: 440 LANCIISGGGDCTLRIWDRITKTQ-XKIIKRDNHWIMCLDANNDK---IVTGAMDGRI 279
LA+C G DC ++ WD T+ K ++ +HW+ + N+ ++TG+ D R+
Sbjct: 244 LASC----GDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRV 297
>gi|3859574 (AF100287) activated protein kinase C receptor homolog [Trypanosoma
vivax]
Length = 317
Score = 32.8 bits (73), Expect = 2.4
Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 6/72 (8%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDK- 309
GH VL + + I+SG D TLR+W+ + + + W+ C+ DK
Sbjct: 107 GHTRDVLSVAFSPDNRQIVSGSRDRTLRVWNVKGECMHTLNGAHSDWVSCVRFSPATDKP 166
Query: 308 -IVTGAMDGRINVYDGNG 258
IV+G D + V+D G
Sbjct: 167 LIVSGGWDNLVKVWDPAG 184
>gi|3122638|sp|Q42384|PRL1_ARATH PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR PRL1
>gi|1076381|pir||S49820 PRL1 protein - Arabidopsis
thaliana >gi|577733|emb|CAA58031| (X82824) PRL1
[Arabidopsis thaliana] >gi|577735|emb|CAA58032| (X82825)
PRL1 [Arabidopsis thaliana] >gi|2244947|emb|CAB10369.1|
(Z97339) PRL1 protein - Arabidopsis thaliana
Length = 486
Score = 32.8 bits (73), Expect = 2.4
Identities = 19/69 (27%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCL--DANNDKI 306
GH V C+ + + +++GG D R+WD TK Q + ++ + + + ++
Sbjct: 258 GHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQV 317
Query: 305 VTGAMDGRINVYD 267
VTG+ D I +D
Sbjct: 318 VTGSHDTTIKFWD 330
>gi|121026|sp|P25387|GBLP_CHLRE GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
>gi|99395|pir||S11904 GTP-binding regulatory protein
beta chain homolog - Chlamydomonas reinhardtii
>gi|18145|emb|CAA37638| (X53574) putative protein has
homology to G protein beta subunit [Chlamydomonas
reinhardtii]
Length = 318
Score = 32.8 bits (73), Expect = 2.4
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNH--WIMCLD----AN 318
GH VL + + I+SG D T+++W+ + + + I + + H W+ C+
Sbjct: 104 GHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLGECKYTIGEPEGHTEWVSCVRFSPMTT 163
Query: 317 NDKIVTGAMDGRINVYD-GNGEYKDSLL 237
N IV+G D + V++ N + K++L+
Sbjct: 164 NPIIVSGGWDKMVKVWNLTNCKLKNNLV 191
>gi|4455183|emb|CAB36715| (AL035521) putative protein [Arabidopsis thaliana]
Length = 495
Score = 32.5 bits (72), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 473 GHEGPVLCIKILANCIISGGGDCTLRIWDR 384
GH+ VLC+ I N ++SG D + +W R
Sbjct: 365 GHKSAVLCLGIAGNLLLSGSADKNICVWRR 394
>gi|1730218|sp|Q08706|GBB_LYMST GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT
>gi|422357|pir||S34348 GTP-binding regulatory protein
beta chain - great pond snail >gi|2133522|pir||S69891
guanine nucleotide regulatory protein beta chain - great
pond snail >gi|312632|emb|CAA80652| (Z23105) guanine
nucleotide regulatory protein beta subunit [Lymnaea
stagnalis]
Length = 341
Score = 32.5 bits (72), Expect = 3.2
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILA-NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + + N I++ GD + +WD T Q +M L + D V
Sbjct: 142 GHTGYLSCCRFIDDNSIVTSSGDMSCALWDIETGQQTTSFTGHTGDVMSLSTSPDFRTFV 201
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 202 SGACDASAKLWD 213
>gi|3560146|emb|CAA20733| (AL031534) beta transducin [Schizosaccharomyces pombe]
Length = 736
Score = 32.5 bits (72), Expect = 3.2
Identities = 15/32 (46%), Positives = 21/32 (64%), Gaps = 2/32 (6%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRIT 378
GH+G V C+ + N + SGG D LRIW+ +T
Sbjct: 377 GHKGRVRCLSVHVSGNWLASGGDDGVLRIWEVMT 410
>gi|121012|sp|P29387|GBB4_MOUSE GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT 4 (TRANSDUCIN BETA
CHAIN 4) >gi|71874|pir||RGMSB4 GTP-binding regulatory
protein beta-4 chain - mouse >gi|193436 (M63658)
G-protein beta subunit [Mus musculus] >gi|193714
(M87286) GTP binding protein beta subunit [Mus musculus]
>gi|246470|bbs|86125 (S86124) GTP-binding protein
beta-subunit 4 [mice, brain, Peptide, 340 aa] [Mus sp.]
Length = 340
Score = 32.5 bits (72), Expect = 3.2
Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 3/69 (4%)
Query: 473 GHEGPVLCIKILANC-IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND--KIV 303
GH G + C + L + II+ GD T +WD T Q + +M L + D V
Sbjct: 141 GHTGYLSCCRFLDDGQIITSSGDTTCALWDIETGQQTTTFTGHSGDVMSLSLSPDLKTFV 200
Query: 302 TGAMDGRINVYD 267
+GA D ++D
Sbjct: 201 SGACDASSKLWD 212
>gi|3738311 (AC005309) unknown protein [Arabidopsis thaliana] >gi|4249406
(AC006072) putative WD-40 repeat protein [Arabidopsis
thaliana]
Length = 530
Score = 32.5 bits (72), Expect = 3.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDA---NNDKIVTGAMDGRINVYD 267
++SGG D ++ WD T + ++ C D N+ +VTG+ D + V+D
Sbjct: 151 LVSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWD 207
>gi|3873652|emb|CAA94873| (Z71177) Similarity with human nuclear autoantigen (PIR accession
number JC2522); cDNA EST EMBL:D65093 comes from this
gene; cDNA EST EMBL:D68406 comes from this gene; cDNA
EST yk297d9.5 comes from this gene; cDNA EST
yk353f10.... >gi|3878328|emb|CAA94901| (Z71181)
Similarity with human nuclear autoantigen (PIR accession
number JC2522); cDNA EST EMBL:D65093 comes from this
gene; cDNA EST EMBL:D68406 comes from this gene; cDNA
EST yk297d9.5 comes from this gene; cDNA EST
yk353f10....
Length = 638
Score = 32.5 bits (72), Expect = 3.2
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 16/73 (21%)
Query: 473 GHEGPVLCIKI--LANCIISGGGD---CTLRI----------WDRITKTQXKIIKRDNHW 339
GH+GPVLC+ + + + +GG D C + +D T+ D W
Sbjct: 411 GHKGPVLCLVLSPTGDHLYTGGIDGNICCFNVPSSNGDPFDSYDPRVLTETLTGHTDAIW 470
Query: 338 IMCLDANNDKIVTGAMDGRINVYD-GNGE 255
+ ++N ++V+ + D + +++ GNGE
Sbjct: 471 SVAYHSSNSRLVSASSDSTVRLWEPGNGE 499
>gi|3023846|sp|O18640|GBLP_DROME GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
(RECEPTOR OF ACTIVATED PROTEIN KINASE C HOMOLOG)
>gi|2290597 (U96491) RACK1 [Drosophila melanogaster]
Length = 318
Score = 32.5 bits (72), Expect = 3.2
Identities = 19/62 (30%), Positives = 32/62 (50%), Gaps = 2/62 (3%)
Query: 434 NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKIVTGAMDGRINVYDGN 261
N +SG D TLR+WD + +R ++ A+N +IV+G+ D I +++
Sbjct: 77 NYALSGSWDQTLRLWDLAAGKTTRRFERHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTL 136
Query: 260 GEYK 249
E K
Sbjct: 137 AECK 140
>gi|2736365 (AF039038) similar to beta transducins [Caenorhabditis elegans]
Length = 431
Score = 32.1 bits (71), Expect = 4.2
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Query: 434 NCIISGGGDCTLRIWDRITKTQXKIIKRDNH---WIMCLDANNDKIVTGAMDGRINVYDG 264
N +S D T+R WD +T +I N +C+D N +V+G D + ++D
Sbjct: 301 NQFVSCSQDKTIRFWDLRQQTAVNVISPGNASPVTSVCVDPNGKLLVSGHEDASVALFDI 360
Query: 263 NG 258
G
Sbjct: 361 GG 362
>gi|3023854|sp|Q20636|GBB5_CAEEL GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT 5
>gi|3877401|emb|CAA95824| (Z71263) predicted using
Genefinder; Similarity to Human guanine
nucleotide-binding protein beta 3 (SW:GBB3_HUMAN); cDNA
EST EMBL:C08343 comes from this gene; cDNA EST
EMBL:C10050 comes from this gene; cDNA EST yk429b11.3
comes...
Length = 356
Score = 32.1 bits (71), Expect = 4.2
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 4/67 (5%)
Query: 473 GHEGPVLCI--KILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKI 306
GH G VLC+ + I+S D + +WD T + + W+M ++ I
Sbjct: 66 GHVGKVLCMDWSLDKRHIVSSSQDGKVIVWDGFTTNKEHALTMPTTWVMACAFSPSSQMI 125
Query: 305 VTGAMDGRINV 273
G +D + +V
Sbjct: 126 ACGGLDNKCSV 136
>gi|3023522|sp|O35142|COPP_RAT COATOMER BETA' SUBUNIT (BETA'-COAT PROTEIN) (BETA'-COP) (P102)
>gi|2454309 (AF002705) beta prime COP [Rattus
norvegicus]
Length = 905
Score = 32.1 bits (71), Expect = 4.2
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 473 GHEGPVLCIKILAN----CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK- 309
GHE V CI + +ISG D ++IWD KT + + + C + +
Sbjct: 183 GHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTPEGHAQNVSCATFHPELP 242
Query: 308 -IVTGAMDGRINVYDGNGEYKDSLL 237
I+TG+ DG + ++ + +S L
Sbjct: 243 IIITGSEDGTVRIWHSSTYRLESTL 267
>gi|4505731|oth|NP_000279|PPEX7 peroxisomal biogenesis factor 7 >gi|3122596|sp|O00628|PEX7_HUMAN
PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR (PTS2 RECEPTOR)
(PEROXIN-7) >gi|1907315 (U76560) peroxisome targeting
signal 2 receptor [Homo sapiens] >gi|1947088 (U88871)
HsPEX7 [Homo sapiens]
Length = 323
Score = 32.1 bits (71), Expect = 4.2
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 440 LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD---ANNDKIVTGAMDGRINVY 270
+ C S GD TLRIWD +I I+ D N + +VTGA+D + +
Sbjct: 167 IPGCFASASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGW 226
Query: 269 D 267
D
Sbjct: 227 D 227
>gi|3236249 (AC004684) hypothetical protein [Arabidopsis thaliana]
Length = 903
Score = 32.1 bits (71), Expect = 4.2
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD---ANNDKIVTGAMDGRINVY 270
++S D T+R+WD TKT K+ N ++ C+ + + ++G++D +I ++
Sbjct: 520 LLSSSMDKTVRLWDIETKTCLKLFAH-NDYVTCIQFSPVDENYFLSGSLDAKIRIW 574
>gi|1438062|emb|CAA64560| (X95263) PWP2 [Homo sapiens]
Length = 919
Score = 32.1 bits (71), Expect = 4.2
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
Query: 473 GHEGPV--LCIKILANCIISGGGDCTLRIWDRITKTQXK 363
GHEGP+ LC + + + S D T+R+WD + K
Sbjct: 499 GHEGPISGLCFNPMKSVLASASWDKTVRLWDMFDSWRTK 537
>gi|2494898|sp|Q15269|PWP2_HUMAN PERIODIC TRYPTOPHAN PROTEIN 2 HOMOLOG >gi|1545982 (U53346) PWP2H
protein [Homo sapiens] >gi|1737066 (U56085) periodic
tryptophan protein 2 [Homo sapiens] >gi|1737072 (U56089)
periodic tryptophan protein 2 [Homo sapiens]
Length = 919
Score = 32.1 bits (71), Expect = 4.2
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
Query: 473 GHEGPV--LCIKILANCIISGGGDCTLRIWDRITKTQXK 363
GHEGP+ LC + + + S D T+R+WD + K
Sbjct: 499 GHEGPISGLCFNPMKSVLASASWDKTVRLWDMFDSWRTK 537
>gi|2250699|dbj|BAA21137| (AB001517) PWP2 protein [Homo sapiens]
Length = 919
Score = 32.1 bits (71), Expect = 4.2
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
Query: 473 GHEGPV--LCIKILANCIISGGGDCTLRIWDRITKTQXK 363
GHEGP+ LC + + + S D T+R+WD + K
Sbjct: 499 GHEGPISGLCFNPMKSVLASASWDKTVRLWDMFDSWRTK 537
>gi|3023859|sp|Q40507|GBB3_TOBAC GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT
>gi|1360092|emb|CAA66842| (X98161) G protein [Nicotiana
tabacum]
Length = 375
Score = 31.7 bits (70), Expect = 5.4
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Query: 473 GHEGPVLCIKILA--NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKI 306
GH G V + N I+S D L +W+ +T + IK W+M + +
Sbjct: 63 GHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQSV 122
Query: 305 VTGAMDGRINVYDGN 261
G +D ++Y+ N
Sbjct: 123 ACGGLDSVCSIYNLN 137
>gi|2982616|emb|CAA06154| (AJ004807) arcA 3 [Nicotiana tabacum]
Length = 290
Score = 31.7 bits (70), Expect = 5.4
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 473 GHEGPVLCI--KILANCIISGGGDCTLRIWDRITKTQXKIIKRDNH--WIMCL--DANN- 315
GH VL + I I+S D T+++W+ + + + I D+H W+ C+ NN
Sbjct: 69 GHTKDVLSVAFSIDNRQIVSASRDKTIKLWNTLGECKYTITDGDSHSDWVSCVRFSPNNL 128
Query: 314 -DKIVTGAMDGRINVYD 267
IV+G+ D + +++
Sbjct: 129 QPTIVSGSWDRTVKIWN 145
>gi|3122952|sp|O15736|TIPD_DICDI TIPD PROTEIN >gi|2407788 (AF019236) TipD [Dictyostelium discoideum]
Length = 612
Score = 31.7 bits (70), Expect = 5.4
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLD-ANNDKIV 303
GH + C+ + N + +GGGD +++WD I+ Q + + I+ + + ND+ +
Sbjct: 322 GHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVSVSFSPNDESI 381
Query: 302 TG 297
G
Sbjct: 382 LG 383
>gi|3287963|sp|Q20168|COPP_CAEEL PROBABLE COATOMER BETA' SUBUNIT (BETA'-COAT PROTEIN) (BETA'-COP)
Length = 1000
Score = 31.7 bits (70), Expect = 5.4
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 6/71 (8%)
Query: 473 GHEGPVLCIKILAN----CIISGGGDCTLRIWDRITKTQXKII--KRDNHWIMCLDANND 312
GHE V C+ IISG D ++IWD KT + + N +C
Sbjct: 183 GHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPELP 242
Query: 311 KIVTGAMDGRINVYDGN 261
I+TG+ D + ++ N
Sbjct: 243 LIITGSEDSTVRLWHAN 259
>gi|3876927|emb|CAA92776| (Z68342) Similarity to Human Coatomer beta' subunit
(SW:COPP_HUMAN); cDNA EST EMBL:T00205 comes from this
gene; cDNA EST EMBL:D33984 comes from this gene; cDNA
EST EMBL:D36965 comes from this gene; cDNA EST
EMBL:D67413 comes fr...
Length = 1000
Score = 31.7 bits (70), Expect = 5.4
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 6/71 (8%)
Query: 473 GHEGPVLCIKILAN----CIISGGGDCTLRIWDRITKTQXKII--KRDNHWIMCLDANND 312
GHE V C+ IISG D ++IWD KT + + N +C
Sbjct: 183 GHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPELP 242
Query: 311 KIVTGAMDGRINVYDGN 261
I+TG+ D + ++ N
Sbjct: 243 LIITGSEDSTVRLWHAN 259
>gi|1169859|sp|P29829|GBB2_DROME GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT 2 >gi|157529
(M76593) [Drosophila melanogaster guanine nucleotide
regulatory protein beta subunit mRNA, complete cds.],
gene product [Drosophila melanogaster]
Length = 346
Score = 31.7 bits (70), Expect = 5.4
Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
Query: 425 ISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKIVTGAMDGRINVYDGN 261
++G D L IWD T + +II + W+M + + G MD + VYD N
Sbjct: 75 VTGSLDGKLIIWDTWTANKVQIIPLRSAWVMTVAFSPSGNFEACGGMDNQCTVYDVN 131
>gi|586324|sp|P38129|T2D4_YEAST TRANSCRIPTION INITIATION FACTOR TFIID 90 KD SUBUNIT (TAFII-90)
>gi|419854|pir||S34023 TATA box-binding
protein-associated factor chain TAFII90 - yeast
(Saccharomyces cerevisiae) >gi|311674|emb|CAA79685|
(Z21487) unknown [Saccharomyces cerevisiae]
>gi|536569|emb|CAA85160| (Z36067) ORF YBR198c
[Saccharomyces cerevisiae] >gi|1091232|prf||2020425A
TATA box-binding protein-associated factor
[Saccharomyces cerevisiae]
Length = 798
Score = 31.3 bits (69), Expect = 7.1
Identities = 23/73 (31%), Positives = 36/73 (48%), Gaps = 5/73 (6%)
Query: 473 GHEGPVLCIKILAN--CIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDK--I 306
GH V C+ N + +G D T R+WD T ++ ++ + D +
Sbjct: 607 GHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWL 666
Query: 305 VTGAMDGRINVYD-GNGE 255
TG+ DG INV+D G G+
Sbjct: 667 STGSEDGIINVWDIGTGK 684
>gi|2385410|dbj|BAA22162| (AB001372) TFIID subunit taf72p [Schizosaccharomyces pombe]
>gi|3859081|emb|CAA21958| (AL033406) tfiid subunit
taf72p. [Schizosaccharomyces pombe]
Length = 643
Score = 31.3 bits (69), Expect = 7.1
Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 2/29 (6%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWD 387
GH G + + + ++SGG DCT+R WD
Sbjct: 545 GHRGNIYSLSFSRESTVLVSGGSDCTVRAWD 575
>gi|3183326|sp|O14186|YDSB_SCHPO HYPOTHETICAL 93.2 KD TRP-ASP REPEATS CONTAINING PROTEIN C4F8.11 IN
CHROMOSOME I >gi|2330828|emb|CAB11058| (Z98530)
beta-transducin [Schizosaccharomyces pombe]
Length = 846
Score = 31.3 bits (69), Expect = 7.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 470 HEGPVLCIKILANCII--SGGGDCTLRIWDRITKTQXKIIKRDN 345
H G VLC+ N + S G D T+RIWD + + +I +N
Sbjct: 220 HNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITINN 263
>gi|3204159|emb|CAA07084| (AJ006523) coatomer, beta-prime subunit [Drosophila melanogaster]
>gi|3204161|emb|CAA07085| (AJ006524) coatomer,
beta-prime subunit [Drosophila melanogaster]
Length = 914
Score = 31.3 bits (69), Expect = 7.1
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 473 GHEGPVLCIKILAN----CIISGGGDCTLRIWDRITKTQXKIIK--RDNHWIMCLDANND 312
GHE V C+ +ISG D ++IWD KT + ++ N +C
Sbjct: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHPELP 242
Query: 311 KIVTGAMDGRINVYDGNGEYK 249
++TG+ DG + ++ +G Y+
Sbjct: 243 IVLTGSEDGTVCIWH-SGTYR 262
>gi|3023851|sp|P93340|GBLP_NICPL GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
>gi|1695181|emb|CAA70705| (Y09514) G protein beta
subunit [Nicotiana plumbaginifolia]
Length = 326
Score = 31.3 bits (69), Expect = 7.1
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIKRDNH--WIMCL--DANN- 315
GH VL + A+ I+S D ++R+W+ + + + I D+H W+ C+ NN
Sbjct: 104 GHTKDVLSVAFSADNRQIVSASRDKSIRLWNTLGECKYIIQDGDSHSDWVSCVRFSPNNL 163
Query: 314 -DKIVTGAMDGRINVYD 267
IV+G+ D + +++
Sbjct: 164 QPTIVSGSWDRTVKIWN 180
>gi|3122262|sp|O02195|IF34_DROME EUKARYOTIC TRANSLATION INITIATION FACTOR 3 DELTA SUBUNIT (EIF-3
DELTA) (TRIP-1 HOMOLOG) >gi|2062708 (U90930) TRIP-1
homolog [Drosophila melanogaster]
Length = 326
Score = 31.3 bits (69), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 473 GHEGPVLCIKI--LANCIISGGGDCTLRIWD 387
GH+G V C+ + + +I+G GD T +IWD
Sbjct: 50 GHQGAVWCLDVDWESRKLITGAGDMTAKIWD 80
>gi|732202|sp|P41318|YNA6_YEAST HYPOTHETICAL 34.0 KD TRP-ASP REPEATS CONTAINING PROTEIN IN
SIS1-MRPL2 INTERGENIC REGION >gi|630172|pir||S45461
hypothetical protein YNL006w - yeast (Saccharomyces
cerevisiae) >gi|496716|emb|CAA54380| (X77114) ORF N2005
[Saccharomyces cerevisiae] >gi|1301822|emb|CAA95865|
(Z71282) ORF YNL006w [Saccharomyces cerevisiae]
Length = 303
Score = 31.3 bits (69), Expect = 7.1
Identities = 15/54 (27%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Query: 428 IISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANND-KIVTGAMDGRINVYD 267
++S G D T+R W+ +T + I+ + + L+ ND K++ A + +YD
Sbjct: 5 LVSAGYDHTIRFWEALTGVCSRTIQHSDSQVNRLEITNDKKLLATAGHQNVRLYD 59
>gi|3024419|sp|P87060|POP1_SCHPO WD-REPEAT PROTEIN POP1 >gi|2065434|emb|CAA69671| (Y08391) WD repeat
protein Pop1 [Schizosaccharomyces pombe]
>gi|2956785|emb|CAA17898| (AL022103) beta-transducin
[Schizosaccharomyces pombe]
Length = 775
Score = 31.3 bits (69), Expect = 7.1
Identities = 17/58 (29%), Positives = 28/58 (47%)
Query: 470 HEGPVLCIKILANCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIMCLDANNDKIVTG 297
HEG V + + + +++G D T+R+WD T ++ I C+ KIV G
Sbjct: 445 HEGDVWTFEYVGDTLVTGSTDRTVRVWDLRTGECKQVFYGHTSTIRCI-----KIVQG 497
>gi|3023849|sp|O42248|GBLP_BRARE GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
(RECEPTOR OF ACTIVATED PROTEIN KINASE C) (RACK)
>gi|2558964 (AF025330) receptor for activated protein
kinase C [Danio rerio]
Length = 317
Score = 31.3 bits (69), Expect = 7.1
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 425 ISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKIVTGAMDGRINVYDGNGEY 252
+SG D TLR+WD T T + ++ A+N +IV+G+ D I +++ G
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLGVC 138
Query: 251 K 249
K
Sbjct: 139 K 139
>gi|3875246|emb|CAB04014| (Z81490) similar to WD domain, G-beta repeats (2 domains); cDNA EST
EMBL:T00482 comes from this gene; cDNA EST EMBL:T00923
comes from this gene; cDNA EST yk449d4.3 comes from this
gene; cDNA EST yk449d4.5 comes from this gene; ...
Length = 510
Score = 30.9 bits (68), Expect = 9.3
Identities = 19/56 (33%), Positives = 35/56 (61%), Gaps = 10/56 (17%)
Query: 437 ANCIISGGGDCTLRIWDRITKTQXKIIK---RDNHWIM-----CLDANNDK--IVTGAMD 288
AN ++SG D + +W+ + K +K +DN +M C+ + D + TG++D
Sbjct: 226 ANYLVSGSKDGFIEVWNYMNGKLRKDLKYQAQDNLMMMDAAVRCISFSRDSEMLATGSID 285
Query: 287 GRINVY 270
G+I V+
Sbjct: 286 GKIKVW 291
>gi|136482|sp|P16649|TUP1_YEAST GLUCOSE REPRESSION REGULATORY PROTEIN TUP1 (FLOCCULATION SUPPRESSOR
PROTEIN) (REPRESSOR AER2) >gi|83454|pir||JN0133
regulatory protein TUP1 - yeast (Saccharomyces
cerevisiae) >gi|171038 (M35861) repressor [Saccharomyces
cerevisiae] >gi|1907221|emb|CAA42259| (X59720) YCR084c,
len:713 [Saccharomyces cerevisiae]
Length = 713
Score = 30.9 bits (68), Expect = 9.3
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWD-RITKTQXKIIKRDNHWIMCLDANNDK-I 306
GHE + + + ++SG GD T+RIWD R + + D + + + K I
Sbjct: 483 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 542
Query: 305 VTGAMDGRINVYD 267
G++D + V+D
Sbjct: 543 AAGSLDRAVRVWD 555
>gi|173067 (M31733) TUP1 protein [Saccharomyces cerevisiae]
Length = 713
Score = 30.9 bits (68), Expect = 9.3
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWD-RITKTQXKIIKRDNHWIMCLDANNDK-I 306
GHE + + + ++SG GD T+RIWD R + + D + + + K I
Sbjct: 483 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 542
Query: 305 VTGAMDGRINVYD 267
G++D + V+D
Sbjct: 543 AAGSLDRAVRVWD 555
>gi|4460|emb|CAA34411| (X16365) SFL2 gene poduct (AA 1-669) [Saccharomyces cerevisiae]
Length = 669
Score = 30.9 bits (68), Expect = 9.3
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 4/69 (5%)
Query: 473 GHEGPVLCIKIL--ANCIISGGGDCTLRIWD-RITKTQXKIIKRDNHWIMCLDANNDK-I 306
GHE + + + ++SG GD T+RIWD R + + D + + + K I
Sbjct: 439 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 498
Query: 305 VTGAMDGRINVYD 267
G++D + V+D
Sbjct: 499 AAGSLDRAVRVWD 511
>gi|1346106|sp|P49177|GBB_ARATH GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT >gi|557694 (U12232)
GTP binding protein beta subunit [Arabidopsis thaliana]
>gi|3096915|emb|CAA18825.1| (AL023094) GTP binding
protein beta subunit [Arabidopsis thaliana]
Length = 377
Score = 30.9 bits (68), Expect = 9.3
Identities = 18/68 (26%), Positives = 30/68 (43%), Gaps = 4/68 (5%)
Query: 473 GHEGPVLCIKILA--NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKI 306
GH G V + N I+S D L +W+ +T + IK W+M N +
Sbjct: 63 GHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSV 122
Query: 305 VTGAMDGRINVY 270
G +D +++
Sbjct: 123 ACGGLDSVCSIF 134
>gi|1002672 (U30261) G protein beta subunit-like; Method: conceptual
translation supplied by author [Schistosoma mansoni]
Length = 301
Score = 30.9 bits (68), Expect = 9.3
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 473 GHEGPVLCIKILANC--IISGGGDCTLRIWDRITKTQXKIIK--RDNHWIMCLDANNDKI 306
GH+G V+ + ++ +++ DC++RIWD +K + D W + I
Sbjct: 227 GHKGWVVSVDFASDNRHLVTASTDCSVRIWDLASKEEKHCFNTHEDQVWCARYSPQGNNI 286
Query: 305 VTGAMDGRINVY 270
++ D I +Y
Sbjct: 287 ISVGDDRSIMIY 298
>gi|3023842|sp|P93563|GBB_SOLTU GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT
>gi|1771734|emb|CAA61106| (X87837) GB1 protein [Solanum
tuberosum]
Length = 377
Score = 30.9 bits (68), Expect = 9.3
Identities = 18/71 (25%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Query: 473 GHEGPVLCIKILA--NCIISGGGDCTLRIWDRITKTQXKIIKRDNHWIM--CLDANNDKI 306
GH G V + N I+S D L +W+ +T + IK W+M + +
Sbjct: 63 GHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPSGQSV 122
Query: 305 VTGAMDGRINVYDGN 261
G +D ++++ N
Sbjct: 123 ACGGLDSACSIFNLN 137
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98705239
Number of Sequences: 369800
Number of extensions: 1457382
Number of successful extensions: 4551
Number of sequences better than 10.0: 328
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 4264
Number of HSP's gapped (non-prelim): 403
length of query: 234
length of database: 113023754
effective HSP length: 53
effective length of query: 180
effective length of database: 93424354
effective search space: 16816383720
effective search space used: 16816383720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)