BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 13VII-2R
         (746 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3322576 (AE001210) conserved hypothetical integral membrane p...    32  4.5
gi|4049862 (AF063866) ORF MSV055 hypothetical protein [Melanoplu...    32  5.9


>gi|3322576 (AE001210) conserved hypothetical integral membrane protein
           [Treponema pallidum]
           Length = 377
           
 Score = 32.1 bits (71), Expect = 4.5
 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 199 IVLGIAIFSLVVIICSKDXXITFSKFFADLFQ-RXHXNSKYYK 74
           ++LG+A+ S V+++CS++  ++ + FF   F  R +  + ++K
Sbjct: 11  VLLGVAVMSAVIVLCSENPSVSLAAFFLKPFSTRGYIRALFHK 53



>gi|4049862 (AF063866) ORF MSV055 hypothetical protein [Melanoplus sanguinipes
           entomopoxvirus]
           Length = 466
           
 Score = 31.7 bits (70), Expect = 5.9
 Identities = 26/97 (26%), Positives = 49/97 (49%), Gaps = 8/97 (8%)

Query: 467 NNLKLTLVENLKLPLTILVYXLINXIYXFQVNCKLXIINDKVL*RQ--------LIYMTM 312
           NN +L     LK   TI +  + N  Y F ++  + + +D+ +  +        + ++ +
Sbjct: 127 NNTELNEYFYLKSE-TIQIDNIENAFYVFMIHRLVGLSSDRYIKSKYKLNELNIIKHLDI 185

Query: 311 FXKYNIFRNXNIPYSSYIINENKSKHYGVKSPHIYLNYRTRYRNI 177
           +   +IF N NI + + IIN+   K +  K    Y+   T+Y NI
Sbjct: 186 YVLLHIFNNNNIIFDNDIINKKSLKKFSTK----YIYKITKYLNI 226


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100833609
Number of Sequences: 369800
Number of extensions: 1492840
Number of successful extensions: 3039
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3036
Number of HSP's gapped (non-prelim): 4
length of query: 248
length of database: 113,023,754
effective HSP length: 53
effective length of query: 195
effective length of database: 93424354
effective search space: 18217749030
effective search space used: 18217749030
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)