BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-2F
(534 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3886064 (AF106581) contains similarity to C2H2-type zinc fing... 47 1e-04
gi|1381394 (U40989) tat interactive protein [Homo sapiens] 45 4e-04
gi|3024755|sp|Q92993|TI60_HUMAN 60 KD TAT INTERACTIVE PROTEIN >g... 45 4e-04
gi|4097714 (U67734) cPLA2 interacting protein [Homo sapiens] 45 4e-04
gi|3551247|dbj|BAA32822| (AB012703) 181 [Daucus carota] 44 7e-04
gi|465512|sp|P34218|SAS3_YEAST SAS3 PROTEIN >gi|542306|pir||S398... 43 0.002
gi|4185890|emb|CAA21829| (AL033125) 1-evidence=predicted by cont... 43 0.002
gi|4056556|emb|CAA22591| (AL034583) putative histone acetyl tran... 41 0.008
gi|3878232|emb|CAB04552| (Z81561) cDNA EST yk191h1.5 comes from ... 39 0.022
gi|3024151|sp|O02193|MOF_DROME MALES-ABSENT ON THE FIRST PROTEIN... 39 0.029
gi|3023717|sp|Q08649|ESA1_YEAST ESA1 PROTEIN >gi|2132096|pir||S6... 37 0.087
gi|2224707|dbj|BAA20837| (AB002381) KIAA0383 [Homo sapiens] 36 0.15
gi|1723485|sp|Q10325|YD6D_SCHPO HYPOTHETICAL 47.3 KD PROTEIN C17... 36 0.19
gi|4091980 (AF074606) histone acetyltransferase [Homo sapiens] 35 0.33
gi|2911076|emb|CAA17538| (AL021960) putative protein [Arabidopsi... 32 3.8
gi|3024154|sp|Q92794|MOZ_HUMAN MONOCYTIC LEUKEMIA ZINC FINGER PR... 32 3.8
gi|2649436 (AE001024) erpK protein, putative [Archaeoglobus fulg... 31 8.5
>gi|3886064 (AF106581) contains similarity to C2H2-type zinc fingers (Pfam:
PF00096, E= 0.78) and to the cullin family (Pfam:
PF00888, E= 0.14) [Caenorhabditis elegans]
Length = 458
Score = 46.9 bits (109), Expect = 1e-04
Identities = 20/43 (46%), Positives = 34/43 (78%), Gaps = 4/43 (9%)
Query: 146 MGNIED---KXXNIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
+G+ ED + N++ I++G ++I+ WYF+PYP+ LT+ +YICEF
Sbjct: 160 VGHSEDAMTRIRNVECIELGRSRIQPWYFAPYPQQLTSLDCIYICEF 206
>gi|1381394 (U40989) tat interactive protein [Homo sapiens]
Length = 482
Score = 44.9 bits (104), Expect = 4e-04
Identities = 19/41 (46%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Query: 140 NIEDKXXNIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
+I + NI+ I++G +++ WYFSPYP+ LT V+Y+CEF
Sbjct: 193 DIVTRMKNIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEF 234
>gi|3024755|sp|Q92993|TI60_HUMAN 60 KD TAT INTERACTIVE PROTEIN >gi|1657982 (U74667) tat interactive
protein [Homo sapiens]
Length = 513
Score = 44.9 bits (104), Expect = 4e-04
Identities = 19/41 (46%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Query: 140 NIEDKXXNIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
+I + NI+ I++G +++ WYFSPYP+ LT V+Y+CEF
Sbjct: 224 DIVTRMKNIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEF 265
>gi|4097714 (U67734) cPLA2 interacting protein [Homo sapiens]
Length = 461
Score = 44.9 bits (104), Expect = 4e-04
Identities = 19/41 (46%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Query: 140 NIEDKXXNIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
+I + NI+ I++G +++ WYFSPYP+ LT V+Y+CEF
Sbjct: 172 DIVTRMKNIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEF 213
>gi|3551247|dbj|BAA32822| (AB012703) 181 [Daucus carota]
Length = 433
Score = 44.1 bits (102), Expect = 7e-04
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 263 WMDLIEQPKRRRIKKTDDEGEKYKAIRGNILEEEKKEVDMGNIED--------------- 129
W+ L EQ + ++ DE + K + +K+++D ++E
Sbjct: 98 WVKL-EQLDLKSVETVVDEKVEDKVTSLKMTRHQKRKIDETHVEGHEELDAASLREHEEF 156
Query: 128 -KXXNIQYIQMGNTQIEAWYFSPYPECLTNSV-VYICEF 18
K NI I++G +IE WYFSP+P +S+ +Y CEF
Sbjct: 157 TKVKNIATIELGRYEIETWYFSPFPPEYNDSLKLYFCEF 195
>gi|465512|sp|P34218|SAS3_YEAST SAS3 PROTEIN >gi|542306|pir||S39835 hypothetical protein YBL052c -
yeast (Saccharomyces cerevisiae)
>gi|313745|emb|CAA80794| (Z23261) YBLO507 [Saccharomyces
cerevisiae] >gi|536080|emb|CAA84873| (Z35814) ORF
YBL052c [Saccharomyces cerevisiae]
Length = 831
Score = 42.6 bits (98), Expect = 0.002
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 221 KTDDEGEKYKAIRGNILEEEKKEVDMGNIEDKXXNIQYIQMGNTQIEAWYFSPYPECLT- 45
+TD E E K +G + + K I+YI + N +I+ WY SP+PE +
Sbjct: 245 ETDQENEDRKKRKGKVPRIKNKVW--------FSQIEYIVLRNYEIKPWYTSPFPEHINQ 296
Query: 44 NSVVYICEF 18
N +V+ICEF
Sbjct: 297 NKMVFICEF 305
>gi|4185890|emb|CAA21829| (AL033125) 1-evidence=predicted by content;
1-method=genefinder;084; 1-method_score=54.97;
1-evidence_end; 2-evidence=predicted by match;
2-match_accession=SWISS-PROT:Q92993;
2-match_description=60 KD TAT INTERACTIVE PROTEIN.; ...
Length = 510
Score = 42.6 bits (98), Expect = 0.002
Identities = 17/41 (41%), Positives = 28/41 (67%), Gaps = 1/41 (2%)
Query: 140 NIEDKXXNIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
++ + N++ I++G +I+ WYFSPYP+ L +YICEF
Sbjct: 220 DVVTRMKNVEMIELGRHRIKPWYFSPYPQELCQMPCIYICEF 261
>gi|4056556|emb|CAA22591| (AL034583) putative histone acetyl transferase [Schizosaccharomyces
pombe]
Length = 463
Score = 40.6 bits (93), Expect = 0.008
Identities = 18/34 (52%), Positives = 24/34 (69%), Gaps = 1/34 (2%)
Query: 119 NIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
NI I +G+ +IE WYFSPYP+ + +VYIC F
Sbjct: 183 NINKICIGDHEIEPWYFSPYPKEFSEVDIVYICSF 217
>gi|3878232|emb|CAB04552| (Z81561) cDNA EST yk191h1.5 comes from this gene [Caenorhabditis
elegans]
Length = 529
Score = 39.1 bits (89), Expect = 0.022
Identities = 16/37 (43%), Positives = 23/37 (61%)
Query: 128 KXXNIQYIQMGNTQIEAWYFSPYPECLTNSVVYICEF 18
K NI I +G +I AWY+SP+P N +Y+CE+
Sbjct: 164 KVKNIPQITIGAHEILAWYYSPFPPDCENLDIYMCEY 200
>gi|3024151|sp|O02193|MOF_DROME MALES-ABSENT ON THE FIRST PROTEIN >gi|2039275 (U71219) males-absent
on the first [Drosophila melanogaster]
Length = 827
Score = 38.7 bits (88), Expect = 0.029
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 128 KXXNIQYIQMGNTQIEAWYFSPYPECLTNS-VVYICEF 18
K I +Q GN +I+ WYFSP+PE + +Y+CE+
Sbjct: 539 KIKYIDKLQFGNYEIDTWYFSPFPEEYGKARTLYVCEY 576
>gi|3023717|sp|Q08649|ESA1_YEAST ESA1 PROTEIN >gi|2132096|pir||S67137 hypothetical protein YOR244w -
yeast (Saccharomyces cerevisiae)
>gi|1420556|emb|CAA99465| (Z75152) ORF YOR244w
[Saccharomyces cerevisiae]
Length = 445
Score = 37.1 bits (84), Expect = 0.087
Identities = 18/34 (52%), Positives = 23/34 (66%), Gaps = 1/34 (2%)
Query: 119 NIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
N+ I MG +IE WYFSPYP LT+ +YI +F
Sbjct: 166 NLNRIIMGKYEIEPWYFSPYPIELTDEDFIYIDDF 200
>gi|2224707|dbj|BAA20837| (AB002381) KIAA0383 [Homo sapiens]
Length = 1520
Score = 36.4 bits (82), Expect = 0.15
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 173 LEEEKKEVDMGNIEDKXXNIQYIQMGNTQIEAWYFSPYP-ECLTNSVVYICEF 18
L EK E + G +ED I+ G +I+ WY SPYP E +Y+CEF
Sbjct: 149 LSWEKIECESG-VEDCGRYPSVIEFGKYEIQTWYSSPYPQEYARLPKLYLCEF 200
>gi|1723485|sp|Q10325|YD6D_SCHPO HYPOTHETICAL 47.3 KD PROTEIN C17G8.13C IN CHROMOSOME I
>gi|1213262|emb|CAA93696| (Z69795) unknown
[Schizosaccharomyces pombe]
Length = 407
Score = 36.0 bits (81), Expect = 0.19
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 119 NIQYIQMGNTQIEAWYFSPYPE---CLTNSVVYICE 21
+I+Y+ G +I+ WY SPYPE C N +YICE
Sbjct: 102 SIRYLYFGTYRIKPWYTSPYPEEYSCAKN--LYICE 135
>gi|4091980 (AF074606) histone acetyltransferase [Homo sapiens]
Length = 611
Score = 35.2 bits (79), Expect = 0.33
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 197 YKAIRGNILEEEKKEVDMGNIEDKXXNIQYIQMGNTQIEAWYFSPYPECLTN-SVVYICE 21
++ + E+ +K G I + I+ I G +++ WY SPYPE +Y+CE
Sbjct: 310 FRRAQARASEDLEKLRLQGQITEGSNMIKTIAFGRYELDTWYHSPYPEEYARLGRLYMCE 369
Query: 20 F 18
F
Sbjct: 370 F 370
>gi|2911076|emb|CAA17538| (AL021960) putative protein [Arabidopsis thaliana]
Length = 325
Score = 31.7 bits (70), Expect = 3.8
Identities = 14/30 (46%), Positives = 22/30 (72%)
Query: 239 KRRRIKKTDDEGEKYKAIRGNILEEEKKEV 150
KR+ +K TDD G K+ IRGN+ + EK+++
Sbjct: 3 KRKEMKNTDD-GSKFSDIRGNLEDTEKRKL 31
>gi|3024154|sp|Q92794|MOZ_HUMAN MONOCYTIC LEUKEMIA ZINC FINGER PROTEIN >gi|1517914 (U47742)
monocytic leukaemia zinc finger protein [Homo sapiens]
Length = 2004
Score = 31.7 bits (70), Expect = 3.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 107 IQMGNTQIEAWYFSPYPECLTN-SVVYICEF 18
I+ G +I WY SPYP+ + +Y+CEF
Sbjct: 512 IEFGKYEIHTWYSSPYPQEYSRLPKLYLCEF 542
>gi|2649436 (AE001024) erpK protein, putative [Archaeoglobus fulgidus]
Length = 116
Score = 30.5 bits (67), Expect = 8.5
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 227 IKKTDDEGEKYKAIRGNILEEEKKEVDMGNIEDK 126
++K DDE YKA+ GNIL +EKKE + + +K
Sbjct: 46 LQKVDDETPVYKAV-GNILVKEKKEDVIKELTEK 78
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75849290
Number of Sequences: 369800
Number of extensions: 1177753
Number of successful extensions: 3331
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3316
Number of HSP's gapped (non-prelim): 19
length of query: 178
length of database: 113,023,754
effective HSP length: 52
effective length of query: 125
effective length of database: 93794154
effective search space: 11724269250
effective search space used: 11724269250
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)