BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-22F
(479 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis deve... 33 1.1
gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family [Met... 32 1.9
gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana] >... 32 1.9
gi|2120160|pir||E64465 GTP-binding protein - Methanococcus janna... 32 3.2
gi|1698846 (U72850) GTP-binding protein [Thermoplasma acidophilum] 31 7.3
gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN P... 30 9.5
gi|3845215 (AE001402) hypothetical protein [Plasmodium falciparum] 30 9.5
>gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis developing GTP-binding protein
DRG, SWISS-PROT Accession Number P43690
[Schizosaccharomyces pombe]
Length = 366
Score = 33.2 bits (74), Expect = 1.1
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 14/38 (36%)
Query: 186 YIRFPSVGKYTLMNQLT--------------NNIISIVGYCEIKIQIFDLSG 73
+I FPSVGK TLM QLT + ++ Y KIQI DL G
Sbjct: 68 FIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPG 119
>gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family [Methanobacterium
thermoautotrophicum]
Length = 380
Score = 32.5 bits (72), Expect = 1.9
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 14/39 (35%)
Query: 189 IYIRFPSVGKYTLMNQLTNN--------------IISIVGYCEIKIQIFDLSG 73
+ I FPSVGK TL+N+LT+ + ++ Y +IQIFD+ G
Sbjct: 81 VLIGFPSVGKSTLLNELTSAESKVGDYQFTTLEIVPGVMEYRGAQIQIFDIPG 133
>gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana]
>gi|2345150|gb|AAB67830| (AF014822) developmentally
regulated GTP binding protein [Arabidopsis thaliana]
Length = 399
Score = 32.5 bits (72), Expect = 1.9
Identities = 38/101 (37%), Positives = 51/101 (49%), Gaps = 17/101 (16%)
Query: 375 EK*KKLKIEWYVLQKNKTTS-PLRSLKTKNF*I-TQITNFNKFM*IIFSAWGV*YXRDKY 202
E+ K+++ E QKNK T L LK K + TQ+ K S G + KY
Sbjct: 5 ERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGA----SGGGEGFEVTKY 60
Query: 201 YKNWI-YIRFPSVGKYTLMNQLTNN--------------IISIVGYCEIKIQIFDLSG 73
+ I FPSVGK TL+ LT I ++ Y + KIQ+ DL G
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPG 118
>gi|2120160|pir||E64465 GTP-binding protein - Methanococcus jannaschii >gi|1591967 (U67573)
GTP-binding protein, member of GTP1/OBG-family
[Methanococcus jannaschii]
Length = 391
Score = 31.7 bits (70), Expect = 3.2
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 14/38 (36%)
Query: 186 YIRFPSVGKYTLMNQLTNN--------------IISIVGYCEIKIQIFDLSG 73
++ FPSVGK TL+N+LTN + I+ Y KIQ+ D G
Sbjct: 89 FVGFPSVGKSTLLNKLTNAKSEVGAYAFTTLTIVPGILEYKGAKIQLLDAPG 140
>gi|1698846 (U72850) GTP-binding protein [Thermoplasma acidophilum]
Length = 360
Score = 30.5 bits (67), Expect = 7.3
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 14/37 (37%)
Query: 183 IRFPSVGKYTLMNQLTNN--------------IISIVGYCEIKIQIFDLSG 73
+ FP+VGK +L+N+LTN+ I I+ Y +IQI DL G
Sbjct: 66 VGFPNVGKSSLLNRLTNSESEIGDYAFTTLQPIPGILEYKGAEIQILDLPG 116
>gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN PYK1-SNC1 INTERGENIC REGION
>gi|1077475|pir||S51983 FUN11 protein - yeast
(Saccharomyces cerevisiae) >gi|595548 (U12980) Fun11p
[Saccharomyces cerevisiae]
Length = 369
Score = 30.1 bits (66), Expect = 9.5
Identities = 17/38 (44%), Positives = 26/38 (67%), Gaps = 14/38 (36%)
Query: 186 YIRFPSVGKYTLMNQLTN--------------NIISIVGYCEIKIQIFDLSG 73
++ FPSVGK TL+++LT + ++ Y KIQ+ DL G
Sbjct: 70 FVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPG 121
>gi|3845215 (AE001402) hypothetical protein [Plasmodium falciparum]
Length = 3973
Score = 30.1 bits (66), Expect = 9.5
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 12/54 (22%)
Query: 436 ENHIWGDNNXKNSTMN-----IIRFRKMKEIKD------RMVRTTEK*NN-IPTQIS*NQ 293
EN+I+GDNN KN +N I + +K EIK ++ R EK NN + +I+ +
Sbjct: 649 ENNIYGDNNKKNFKINNIYNIIDKEKKKNEIKKKNNNEMKIERKKEKNNNEMKIEINKEK 708
Query: 292 XFLNYT 275
F++ T
Sbjct: 709 NFIDNT 714
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83585143
Number of Sequences: 368476
Number of extensions: 1453270
Number of successful extensions: 2540
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2539
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 112640273
effective HSP length: 52
effective length of query: 107
effective length of database: 93479521
effective search space: 10002308747
effective search space used: 10002308747
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)