BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-14R
(776 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|132473|sp|P22336|RFA1_YEAST REPLICATION FACTOR-A PROTEIN 1 (R... 142 3e-33
gi|2498845|sp|Q92372|RFA1_SCHPO REPLICATION FACTOR-A PROTEIN 1 (... 139 2e-32
gi|2258469 (AF009179) replication protein A1 [Oryza sativa] 134 9e-31
gi|400975|sp|Q01588|RFA1_XENLA REPLICATION PROTEIN A 70 KD DNA-B... 132 3e-30
gi|2498844|sp|Q24492|RFA1_DROME REPLICATION PROTEIN A 70 KD DNA-... 130 1e-29
gi|1350579|sp|P27694|RFA1_HUMAN REPLICATION PROTEIN A 70 KD DNA-... 129 3e-29
gi|2828288|emb|CAA16702| (AL021687) replication A protein-like [... 127 1e-28
gi|2833320|sp|Q23696|RFA1_CRIFA REPLICATION FACTOR A 51 KD SUBUN... 114 6e-25
gi|4028997|emb|CAA10310| (AJ131134) F18A1.5 protein [Caenorhabdi... 98 9e-20
gi|2833300|sp|Q19537|RFA1_CAEEL PROBABLE REPLICATION FACTOR A 73... 93 2e-18
gi|2624702|pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domai... 75 6e-13
gi|3695387 (AF096371) contains similarity to replication protein... 46 4e-04
gi|2128703|pir||F64444 hypothetical protein MJ1159 - Methanococc... 39 0.047
gi|4530128|gb|AAD21873| (AF078907) PINCH [Drosophila melanogaster] 37 0.14
gi|4006824 (AC005970) hypothetical protein [Arabidopsis thaliana] 36 0.41
gi|3766363|emb|CAA21415| (AL031907) hypothetical serine rich pro... 36 0.41
gi|3581899|emb|CAA20837| (AL031543) hypothetical serine-rich pro... 36 0.41
gi|2622495 (AE000901) replication factor A related protein [Meth... 35 0.71
gi|3560209|emb|CAA20762| (AL031536) hypothetical protein [Schizo... 34 1.2
gi|547942|sp||MUC3_HUMAN_1 [Segment 1 of 2] MUCIN 3 (INTESTINAL ... 33 2.1
gi|4049900 (AF063866) ORF MSV005 hypothetical protein [Melanoplu... 33 2.1
gi|3493464 (U79117) S-layer protein [Clostridium thermocellum] 33 2.7
gi|1346168|sp|P47775|GPRC_HUMAN PROBABLE G PROTEIN-COUPLED RECEP... 32 4.7
gi|1763304 (U75357) myosin II [Schizosaccharomyces pombe] 32 4.7
gi|4539277|emb|CAB39901| (AL049498) myosin ii [Schizosaccharomyc... 32 4.7
gi|2853301 (AF007194) mucin [Homo sapiens] 32 4.7
gi|3758864|emb|CAB11149| (Z98551) predicted using hexExon; MAL3P... 32 6.1
gi|1731402|sp|P50464|UN97_CAEEL HOMEOBOX PROTEIN UNC-97 >gi|1086... 32 6.1
gi|419174|pir||B60013 orf2 protein - fowlpox virus (fragment) >g... 32 6.1
gi|4455288|emb|CAB36824| (AL035527) putative protein (fragment) ... 31 8.0
gi|2894558|emb|CAA17147| (AL021890) putative protein [Arabidopsi... 31 8.0
>gi|132473|sp|P22336|RFA1_YEAST REPLICATION FACTOR-A PROTEIN 1 (RF-A) (SINGLE-STRANDED DNA-BINDING
PROTEIN) (DNA BINDING PROTEIN BUF2) (REPLICATION PROTEIN
A 69 KD DNA-BINDING SUBUNIT) >gi|82991|pir||S20145
replication factor A chain 1 - yeast (Saccharomyces
cerevisiae) >gi|4312|emb|CAA42420| (X59748) replication
factor-A protein 1 [Saccharomyces cerevisiae] >gi|172466
(M60262) single stranded DNA binding protein
[Saccharomyces cerevisiae] >gi|349752 (L22015) Rfa1p:
Subunit of replication factor RF-A [Saccharomyces
cerevisiae] >gi|410541|bbs|136561 (S64901) BUF2=URS1- and
CAR1-binding protein [Saccharomyces cerevisiae, EJ101,
Peptide, 621 aa] [Saccharomyces cerevisiae]
Length = 621
Score = 142 bits (354), Expect = 3e-33
Identities = 83/245 (33%), Positives = 141/245 (56%), Gaps = 27/245 (11%)
Query: 38 PKVHYNFTKVGALNT--TNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTG-S 208
PK H+NF K+ A+ N VD++G+++ + + ++ K+ +++D +VD +G S
Sbjct: 296 PKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRA-GKKFDRRDITIVDDSGFS 354
Query: 209 VRVTLWNN-LVETELDNNPVVALKNMRATEYNGXXXXXXXXXXXXXNPELEEAYELRGWY 385
+ V LWN ++ L V A+K +R T++ G NPE+ EAY L+GWY
Sbjct: 355 ISVGLWNQQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWY 414
Query: 386 EEEGKDIKIVLPKREE---------------ESKTIEEVTTMEL------EYSTIISTII 502
+ +G++ + K+E + TI L ++ ++ + I
Sbjct: 415 DSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAIS 474
Query: 503 FIKEDLLWYSACVE--CNKKVELEGEGQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWL 676
F+K D Y AC CNKKV + +G +RCE+C+ + N+R+++T+++ D T Q+WL
Sbjct: 475 FLKVDNFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWL 534
Query: 677 TLFDEQATKLFKHTANELKEIGEEDSTKLQSI 772
TLFD+QA +L AN L + EED + I
Sbjct: 535 TLFDDQAKQLLGVDANTLMSLKEEDPNEFTKI 566
>gi|2498845|sp|Q92372|RFA1_SCHPO REPLICATION FACTOR-A PROTEIN 1 (SINGLE-STRANDED DNA-BINDING PROTEIN
P68 SUBUNIT) >gi|1502413 (U59385) single-stranded DNA
binding protein p68 subunit [Schizosaccharomyces pombe]
>gi|1814272 (U75446) Rpa1 [Schizosaccharomyces pombe]
>gi|4049512|emb|CAA22533| (AL034563) replication factor-a
protein 1 [Schizosaccharomyces pombe]
Length = 609
Score = 139 bits (348), Expect = 2e-32
Identities = 72/220 (32%), Positives = 130/220 (58%), Gaps = 20/220 (9%)
Query: 92 IVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTG-SVRVTLWNNL-VETELDNNPV 265
++D+IGV++ V + ++ + +K+D +VD+TG +RVTLW +E + +
Sbjct: 311 VIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEFSVSEESI 370
Query: 266 VALKNMRATEYNGXXXXXXXXXXXXXNPELEEAYELRGWYEEEGKDIKIVLPK------- 424
+A K ++ ++ G +P+++E++ L+GWY+ +G+ +
Sbjct: 371 LAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSVISSTLS 430
Query: 425 ---REEESKTIEEVTTMEL------EYSTIISTIIFIKEDLLWYSAC--VECNKKVELEG 571
R E K I EV L +Y ++ TI++I++ + Y AC +CNKKV +G
Sbjct: 431 TTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAADCNKKVFDQG 490
Query: 572 EGQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQATKLFKHTANELKEIGEED 751
G +RCE+CN +D +R+++T+ V DHTGQ+WL +FD+ + TA+EL ++ E D
Sbjct: 491 -GSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQEND 549
>gi|2258469 (AF009179) replication protein A1 [Oryza sativa]
Length = 630
Score = 134 bits (333), Expect = 9e-31
Identities = 82/246 (33%), Positives = 140/246 (56%), Gaps = 32/246 (13%)
Query: 14 ELTAEVENPKVHYNFTKVGALNTT---NPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDF 184
E E P++ YNF K+ L +VD+IGVV+ V T +V K + K+D
Sbjct: 291 EAEGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDI 350
Query: 185 ILVDKTG-SVRVTLWNNLVETE-------LDNNPVVALKNMRATEYNGXXXXXXXXXXXX 340
++ D + +V ++LWN+L T +D+ P++A+K+++ +++ G
Sbjct: 351 VVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIV 410
Query: 341 XNPELEEAYELRGWYEEEGKDIKIVLPKREEESKTIEEVTTMELE--------------- 475
NP+L EA +LR WY+ EGK + + + + +M +
Sbjct: 411 VNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQ 470
Query: 476 ----YSTIISTIIFIKED-LLWYSACVECNKKV-ELEGEGQYRCERCNNLFDKCNFRFMV 637
+ ++ + I IK D +WY AC CNKKV E G G Y CE C +C+ R+++
Sbjct: 471 DKPVFFSLNAYISLIKPDQTMWYRACKTCNKKVTEAMGSG-YWCEGCQKNDAECSLRYIM 529
Query: 638 TMNVADHTGQIWLTLFDEQATKLFKHTANELKEIGEED 751
+ V+D TG+ WL+LF++QA ++ +A+EL I +E+
Sbjct: 530 VIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEE 567
>gi|400975|sp|Q01588|RFA1_XENLA REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT (RP-A) (RF-A)
(REPLICATION FACTOR-A PROTEIN 1) (SINGLE-STRANDED
DNA-BINDING PROTEIN) >gi|345603|pir||A43458 replication
protein A1 - African clawed frog >gi|65066|emb|CAA47665|
(X67240) replication protein A (RPA) [Xenopus laevis]
Length = 609
Score = 132 bits (329), Expect = 3e-30
Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 21/238 (8%)
Query: 38 PKVHYNFTKVGALNTTNP--IVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGSV 211
P V + F +G L + N ++DIIGV K V + V IKS +E K+ L+D +G V
Sbjct: 287 PMVQFEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKV 346
Query: 212 -RVTLWNNLVET-ELDNNPVVALKNMRATEYNGXXXXXXXXXXXXXNPELEEAYELRGWY 385
TLW + + PVVA+K R +++ G NP++ EA++LR W+
Sbjct: 347 VSTTLWGEDADKFDGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWF 406
Query: 386 EEEGKDIKIVLPKREEES---------KTIEEVTTMEL------EYSTIISTIIFIKEDL 520
+ EG+ ++ K++ EV L +Y T ++TI++++++
Sbjct: 407 DSEGQVVEGTSISESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVYLRKEN 466
Query: 521 LWYSACV--ECNKKVELEGEGQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQ 694
Y AC +CNKKV + G +RCE+CN F +R +++ N+AD W+T F E
Sbjct: 467 CLYQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQES 526
Query: 695 ATKLFKHTANELKEIGEED 751
A + A L E+ E++
Sbjct: 527 AESILGQNATYLGELKEKN 545
>gi|2498844|sp|Q24492|RFA1_DROME REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT (RP-A) (RF-A)
(REPLICATION FACTOR-A PROTEIN 1) (SINGLE-STRANDED
DNA-BINDING PROTEIN) (DMRPA1) >gi|1359608|emb|CAA94241|
(Z70277) replication protein A [Drosophila melanogaster]
Length = 603
Score = 130 bits (323), Expect = 1e-29
Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 20/245 (8%)
Query: 38 PKVHYNFTKVGALN--TTNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGS- 208
P++ YN + ++ VD IG+ KEV + + ++ KE +K+D LVD + S
Sbjct: 280 PEIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSA 339
Query: 209 VRVTLW-NNLVETELDNNPVVALKNMRATEYNGXXXXXXXXXXXXX-NPELEEAYELRGW 382
+ +TLW ++ V + PV+ +K R E+NG NP++ EA++LRGW
Sbjct: 340 ISLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGW 399
Query: 383 YEEEGKD-IKIVLPKR------EEESKTIEEVTTMEL------EYSTIISTIIFIKEDLL 523
++ G D + ++ R E T+++ L +Y + + +K++
Sbjct: 400 FDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENA 459
Query: 524 WYSACVE--CNKKVELEGEGQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQA 697
+Y AC + CNKKV EG Q+RCE+CN LF +R ++ M++ D T W++ F+E
Sbjct: 460 FYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVG 519
Query: 698 TKLFKHTANELKEIGEEDSTKLQSI 772
+L HT+ E+ E E D K + I
Sbjct: 520 EQLLGHTSQEVGEALENDPAKAEQI 544
>gi|1350579|sp|P27694|RFA1_HUMAN REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT (RP-A) (RF-A)
(REPLICATION FACTOR-A PROTEIN 1) (SINGLE-STRANDED
DNA-BINDING PROTEIN) >gi|280855|pir||A40457 replication
protein A1 - human >gi|337489 (M63488) replication
protein A, 70-kDa subunit [Homo sapiens]
>gi|4506583|ref|NP_002936.1|pRPA1| replication protein A1
(70kD)
Length = 616
Score = 129 bits (320), Expect = 3e-29
Identities = 73/245 (29%), Positives = 135/245 (54%), Gaps = 21/245 (8%)
Query: 38 PKVHYNFTKVGALN--TTNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGSV 211
P V ++FT + L + + +VDIIG+ K + + ++S +E K++ L+D +G V
Sbjct: 296 PTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKV 355
Query: 212 -RVTLWNNLVET-ELDNNPVVALKNMRATEYNGXXXXXXXXXXXXXNPELEEAYELRGWY 385
TLW + + PV+A+K R +++ G NP++ EAY+LRGW+
Sbjct: 356 VTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWF 415
Query: 386 EEEGKDIKIV---------LPKREEESKTIEEVTTMEL------EYSTIISTIIFIKEDL 520
+ EG+ + V + KT+ EV + L +Y + ++T+++++++
Sbjct: 416 DAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKEN 475
Query: 521 LWYSACV--ECNKKVELEGEGQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQ 694
Y AC +CNKKV + G YRCE+C+ F +R ++++N+AD W+T F E
Sbjct: 476 CMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQES 535
Query: 695 ATKLFKHTANELKEIGEEDSTKLQSI 772
A + A L E+ +++ + +
Sbjct: 536 AEAILGQNAAYLGELKDKNEQAFEEV 561
>gi|2828288|emb|CAA16702| (AL021687) replication A protein-like [Arabidopsis thaliana]
Length = 717
Score = 127 bits (315), Expect = 1e-28
Identities = 79/246 (32%), Positives = 142/246 (57%), Gaps = 26/246 (10%)
Query: 38 PKVHYNFTKVGALNT--TNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTG-S 208
P+ ++F +G + + N IVD+IG+V + T T+ K+ K+ L D +G S
Sbjct: 283 PRHQFHFRTIGDIESMENNCIVDVIGIVSSISPTVTITRKN-GTATPKRSLQLKDMSGRS 341
Query: 209 VRVTLWNNLVETELDNN--PVVALKNMRATEYNGXXXXXXXXXXXXXNPELEEAYELRGW 382
V VT+W + ++ D+ PV+A+K R +E+NG +P+ EA +L+ W
Sbjct: 342 VEVTMWGDF-QSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNW 400
Query: 383 YEEEGKDIKIVLPKRE-------EESKTIEEV------TTMELEYSTIISTIIFIKEDLL 523
+E EGK + + RE + KTI ++ T+ + ++ T+ +TI+++K D
Sbjct: 401 FEREGKSVPCISLSREFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNF 460
Query: 524 WYSACV------ECNKKVELEGEGQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLF 685
Y+AC C+KKV G+G +RCE+C+ D+C++R+++ + + DHT +T F
Sbjct: 461 CYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAF 520
Query: 686 DEQATKLFKHTANELKEIGEE--DSTKLQSIV 775
E ++ +A +L + E D K + I+
Sbjct: 521 QEAGEEIMGISAKDLYYVKNEHKDEEKFEDII 552
>gi|2833320|sp|Q23696|RFA1_CRIFA REPLICATION FACTOR A 51 KD SUBUNIT (RP-A) (RF-A) (REPLICATION
FACTOR-A PROTEIN 1) (SINGLE-STRANDED DNA-BINDING PROTEIN
P51 SUBUNIT) >gi|481316|pir||S38458 replication protein
A 51K chain - Crithidia fasciculata
>gi|413772|emb|CAA80682| (Z23163) replication protein A
51 kilodalton subunit [Crithidia fasciculata]
Length = 467
Score = 114 bits (283), Expect = 6e-25
Identities = 78/238 (32%), Positives = 125/238 (51%), Gaps = 26/238 (10%)
Query: 38 PKVHYNFTKVGALNT--TNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGSV 211
P YNF + L +VD++GVV +V S++ KS +E K++ + D + +V
Sbjct: 125 PMQRYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSAAV 184
Query: 212 RVTLWNNLVETELDNNPV---VALKNMRATEYNGXXXXXXXXXXXXXNP-ELEEAYELRG 379
VT WN+ E + N PV VAL+ ++ ++G NP +L + +L
Sbjct: 185 EVTFWND--EAKAWNYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPDVKKLAT 242
Query: 380 WYEEEGKDIKIVLPKR------------EEESKTIEEVTTMEL------EYSTIISTIIF 505
WY G + L + K ++E+ + + EY + I+
Sbjct: 243 WYVSTGGANVVSLSSQGLGAGGGGGGEGNRGRKYLDEIQSEGIGRGAKPEYVDVRCVPIY 302
Query: 506 IKEDLLWYSACVECNKKVELEGE--GQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLT 679
K+D WY AC CNKKV EG ++RCE+C+ R++V++ V D+ Q+WLT
Sbjct: 303 FKQDAQWYDACPTCNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQVTDNVSQVWLT 361
Query: 680 LFDEQATKLFKHTANELKEIGEED 751
LF+E + F A+ELK +ED
Sbjct: 362 LFNEAGVEFFGMEASELKRRAQED 385
>gi|4028997|emb|CAA10310| (AJ131134) F18A1.5 protein [Caenorhabditis briggsae]
>gi|4033360|emb|CAA10466| (AJ131634) F18A1.5 protein
[Caenorhabditis briggsae]
Length = 658
Score = 97.5 bits (239), Expect = 9e-20
Identities = 63/220 (28%), Positives = 122/220 (54%), Gaps = 19/220 (8%)
Query: 92 IVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGS-VRVTLWNN-LVETELDN--N 259
++D++ +V+++ A +T K K++ L+D++ + VR+TLW + ++ +D+
Sbjct: 353 MIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALVRLTLWGDEAIKANVDDYHG 412
Query: 260 PVVALKNMRATEYNGXXXXXXXXXXXXXN-PELEEAYELRGWY--EEEGKDIKIVLPKR- 427
V+A K + E+NG PE+ EL WY E+ ++K++
Sbjct: 413 KVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELYDWYTTEKPHSELKLISQTSG 472
Query: 428 --EEESKTIEEVTTMEL-------EYSTIISTIIFIKEDLLWYSACVE--CNKKVELEGE 574
E +TI + M+ +Y+++ + I I + Y C C KKV +E +
Sbjct: 473 GMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRINPNSALYKGCASEGCQKKV-IESD 531
Query: 575 GQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQATKLFKHTANELKEIGEED 751
G+YRCE+CN +K + +M+ ++D TGQ+++T F + A K+ TA E+ ++ +E+
Sbjct: 532 GEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKVVGKTAQEVGDLKDEN 590
>gi|2833300|sp|Q19537|RFA1_CAEEL PROBABLE REPLICATION FACTOR A 73 KD SUBUNIT (RP-A) (RF-A)
(REPLICATION FACTOR-A PROTEIN 1) >gi|1109835 (U41535)
similar to replication factor A [Caenorhabditis elegans]
Length = 655
Score = 92.8 bits (227), Expect = 2e-18
Identities = 66/245 (26%), Positives = 123/245 (49%), Gaps = 19/245 (7%)
Query: 38 PKVHYNFTKVGAL-NTTNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGS-V 211
PK+ K+G + ++D++ VV+++ +T K K++ L+D++G+ V
Sbjct: 334 PKLILKRVKLGEIAGYAGQLIDVLVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALV 393
Query: 212 RVTLWNNLVETELDNN---PVVALKNMRATEYNGXXXXXXXXXXXXXN-PELEEAYELRG 379
R+TLW + L ++ V+A K + E+NG + PE+ EL
Sbjct: 394 RLTLWGDEATKALVDDYVQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYD 453
Query: 380 WYEEEGKDIKIVLPKR-----EEESKTIEEVTTMEL-------EYSTIISTIIFIKEDLL 523
WY ++ + + E +TI + M+ +Y+T+ + I +
Sbjct: 454 WYANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNPTNA 513
Query: 524 WYSACVECNKKVELEGE-GQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQAT 700
Y C + +L GE G YRCE+CN +K + +M+ ++D TGQ+++T F + A
Sbjct: 514 LYRGCASEGCQKKLVGENGDYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAA 573
Query: 701 KLFKHTANELKEIGEEDSTKLQSI 772
K+ +A EL E+ +E + +I
Sbjct: 574 KIVGKSAAELGELHDESPDEYNAI 597
>gi|2624702|pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication
Protein A Bound To Single Stranded Dna, Rpa70 Subunit,
Residues 183 - 420
Length = 246
Score = 74.9 bits (181), Expect = 6e-13
Identities = 38/121 (31%), Positives = 67/121 (54%), Gaps = 4/121 (3%)
Query: 38 PKVHYNFTKVGALN--TTNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGSV 211
P V ++FT + L + + +VDIIG+ K + + ++S +E K++ L+D +G V
Sbjct: 120 PTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKV 179
Query: 212 -RVTLWNNLVET-ELDNNPVVALKNMRATEYNGXXXXXXXXXXXXXNPELEEAYELRGWY 385
TLW + + PV+A+K R +++ G NP++ EAY+LRGW+
Sbjct: 180 VTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWF 239
Query: 386 EEEGK 400
+ EG+
Sbjct: 240 DAEGQ 244
>gi|3695387 (AF096371) contains similarity to replication protein A1
[Arabidopsis thaliana]
Length = 1073
Score = 45.7 bits (106), Expect = 4e-04
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 34/131 (25%)
Query: 344 NPELEEAYELRGWYEEEGK---------DIKIVLPKREEES----KTIEEV-TTMELEYS 481
NP+ EA+ +G ++V KR + S TIE++ ++ E+
Sbjct: 203 NPDFPEAHHFSQTLPNDGAICVYRTRVPRFEMVAVKRIDYSVYTRNTIEDLLSSTEVGKV 262
Query: 482 TIISTIIFIKEDLLWYS-ACVECNKKVELEGEG-----------QYRCERCNNLFDKCNF 625
++ TI I D WY +C CNKKV G ++ C+ C ++
Sbjct: 263 RVLCTIYAIDTDWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPKFWCDTCKSVVTNVVS 322
Query: 626 RFMVTMNVADHTGQIWLTLFD--------EQATKLFKHTANELKE 736
R+M+ V D T + L LFD E AT + + NE+++
Sbjct: 323 RYMIYAKVMDSTSEAKLVLFDSICFEIIGESATSVLNGSVNEIED 367
>gi|2128703|pir||F64444 hypothetical protein MJ1159 - Methanococcus jannaschii >gi|1500014
(U67558) replication factor A related protein
[Methanococcus jannaschii]
Length = 645
Score = 38.7 bits (88), Expect = 0.047
Identities = 17/43 (39%), Positives = 26/43 (59%)
Query: 176 KDFILVDKTGSVRVTLWNNLVETELDNNPVVALKNMRATEYNG 304
K FI+ D+TGS+RVTLW+NL + ++ V ++ Y G
Sbjct: 212 KSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRVRGYIREGYYG 254
Score = 37.5 bits (85), Expect = 0.11
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 95 VDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTGSVRVTLWNNLVETELDNNPVVAL 274
V+I GV+ ++ T + K+ + DK+G++R+TLW++L E ++ V+ +
Sbjct: 78 VEITGVITDISEIKTFKRRDGSLGKYKR-ITIADKSGTIRMTLWDDLAELDVKVGDVIKI 136
Query: 275 KNMRATEY 298
+ RA ++
Sbjct: 137 ERARARKW 144
>gi|4530128|gb|AAD21873| (AF078907) PINCH [Drosophila melanogaster]
Length = 335
Score = 37.1 bits (84), Expect = 0.14
Identities = 15/32 (46%), Positives = 21/32 (64%)
Query: 536 CVECNKKVELEGEGQYRCERCNNLFDKCNFRF 631
C ECN KV+ E G+Y C++C+ L D+ RF
Sbjct: 116 CHECNAKVKAEITGRYVCQKCHGLIDEEPLRF 147
>gi|4006824 (AC005970) hypothetical protein [Arabidopsis thaliana]
Length = 456
Score = 35.6 bits (80), Expect = 0.41
Identities = 33/112 (29%), Positives = 56/112 (49%), Gaps = 16/112 (14%)
Query: 440 KTIEEV-TTMELEYSTIISTIIFIKEDL-LWYSACVECNKKVELEG-----------EGQ 580
+TI+EV T+ ++ + T+ I D +Y C NKKV E + +
Sbjct: 247 QTIKEVLTSSDVGKCKTVCTVSAIDTDWPCYYFCCRAHNKKVVKEEAIKLEDVKQPQKPR 306
Query: 581 YRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQATKLFKHTANELKEIG---EED 751
+ CE CN +F + +++ D T + LFD A ++ TA +L + ED
Sbjct: 307 FWCEICNGFAKSVVAKFCLHLHIMDQTDEARCMLFDSHAKEILGTTAPQLLDGSFDEIED 366
Query: 752 STKLQSIV 775
T L ++
Sbjct: 367 PTVLPDVI 374
>gi|3766363|emb|CAA21415| (AL031907) hypothetical serine rich protein [Schizosaccharomyces
pombe]
Length = 1131
Score = 35.6 bits (80), Expect = 0.41
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 498 IVEIIVEYSNSMVVTSSIVFDSSSLLGNTIFISFPSSSYQPRNSYASSNSGLITIEDEEI 319
I E +++ V TSS ++DSSS T I SS Y SSNS ++ +
Sbjct: 491 IFSTATEATDTSVQTSSAIYDSSS----TSNIQSSSSVYASSTGALSSNS--LSSSTSSV 544
Query: 318 VDKETPLYSVARIFFRATTGLLSNSVSTKLFQSVTRTLPVLST--KIKSFFSASFCTLLI 145
P S + ++ +T L SNS+S+ + T +P S+ ++ S S + +
Sbjct: 545 STSYIPNAS-SSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVS 603
Query: 144 ITVEVANTSFTTPIMST 94
TS T+ I+ST
Sbjct: 604 SITASGTTSSTSEIVST 620
>gi|3581899|emb|CAA20837| (AL031543) hypothetical serine-rich protein [Schizosaccharomyces
pombe]
Length = 1088
Score = 35.6 bits (80), Expect = 0.41
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 498 IVEIIVEYSNSMVVTSSIVFDSSSLLGNTIFISFPSSSYQPRNSYASSNSGLITIEDEEI 319
I E +++ V TSS ++DSSS T I SS Y SSNS ++ +
Sbjct: 448 IFSTATEATDTSVQTSSAIYDSSS----TSNIQSSSSVYASSTGALSSNS--LSSSTSSV 501
Query: 318 VDKETPLYSVARIFFRATTGLLSNSVSTKLFQSVTRTLPVLST--KIKSFFSASFCTLLI 145
P S + ++ +T L SNS+S+ + T +P S+ ++ S S + +
Sbjct: 502 STSYIPNAS-SSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVS 560
Query: 144 ITVEVANTSFTTPIMST 94
TS T+ I+ST
Sbjct: 561 SITASGTTSSTSEIVST 577
>gi|2622495 (AE000901) replication factor A related protein [Methanobacterium
thermoautotrophicum]
Length = 622
Score = 34.8 bits (78), Expect = 0.71
Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 5/226 (2%)
Query: 26 EVENPKVHYNFTKVGALNTTNPIVDIIGVVKEVFATSTVMIKSVQKEAEKKDFILVDKTG 205
E + P+ K+G L+ + ++G+V +V ++ K + D TG
Sbjct: 279 EYDVPEFREELVKIGDLHEMRNVT-VMGLVTKV-NDPVEFERNDGTTGSVKSIEIADDTG 336
Query: 206 SVRVTLWNNLVETELDNNPVVALK--NMRATEYN-GXXXXXXXXXXXXXNPELEEAYELR 376
S RVTLW+ +++ ++ + N+ ++N NP
Sbjct: 337 SARVTLWDEDTRIKINKGDIIRISGANVEFDDFNQSYRINTNFNTRITLNP--------- 387
Query: 377 GWYEEEGKDIKIVLPKREE-ESKTIEEVTTMELEYSTIISTIIFIKEDLLWYSACVECNK 553
E +G +K++ RE+ I E+ ME E + D++ + +
Sbjct: 388 ---ESDGALLKVLEEYREQMRPMKISEILEMEDEGEEV---------DVVGRIFSLSDPR 435
Query: 554 KVELE-GEGQYRCERCNNLFDKCNFRFMVTMNVADHTGQIWLTLFDEQATK 703
+ E E G G R +M +AD TG+I ++L+DE+A K
Sbjct: 436 EFEREDGTGIVR-----------------SMELADETGKIRISLWDEKAEK 469
Score = 31.3 bits (69), Expect = 8.0
Identities = 17/57 (29%), Positives = 31/57 (53%), Gaps = 7/57 (12%)
Query: 116 KEVFATSTVMIKSVQKEAEKKD-------FILVDKTGSVRVTLWNNLVETELDNNPVVAL 274
+EV + S +E E++D L D+TG +R++LW+ E ++ V +
Sbjct: 420 EEVDVVGRIFSLSDPREFEREDGTGIVRSMELADETGKIRISLWDEKAEKPMNIGDAVRI 479
Query: 275 KNMR 286
+N R
Sbjct: 480 ENAR 483
>gi|3560209|emb|CAA20762| (AL031536) hypothetical protein [Schizosaccharomyces pombe]
Length = 948
Score = 34.0 bits (76), Expect = 1.2
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 522 NRSSLIKIIVEIIVEYSNSMVVTSSIVFDSSSLLGNTIFISFPSSSYQPRNSYASSNSGL 343
N S+L I I+ S+S + +S+IV +S +++FIS SSS Q +SY + +
Sbjct: 568 NSSALTHISSSIVSSGSSSALSSSTIVSSINS--SSSVFISSVSSSLQYSSSYVTETTTS 625
Query: 342 ITIEDEEIVDKETPLYSVAR---IFFRATTGLLSNSVSTKLFQSVTRTLPVLSTK---IK 181
++ + TP+ S A + + + S + + T PV ST +
Sbjct: 626 GSVGFTTTI--ATPVGSTAGTVVVDIPTPSWVTETVTSGSVGFTTTIATPVGSTAGTVLV 683
Query: 180 SFFSASFCTLLIITVEVA-NTSFTTPIMSTIGLVVFNAPT 64
+ S+ T + + V T+ TP+ +T G VV + PT
Sbjct: 684 DIPTPSWVTETVTSGSVEFTTTIATPVGTTAGTVVVDIPT 723
>gi|547942|sp||MUC3_HUMAN_1 [Segment 1 of 2] MUCIN 3 (INTESTINAL MUCIN 3)
>gi|107104|pir||A35690 mucin (clone SIB124) - human
(fragment) >gi|553593 (M55405) mucin [Homo sapiens]
Length = 128
Score = 33.2 bits (74), Expect = 2.1
Identities = 23/76 (30%), Positives = 38/76 (49%), Gaps = 2/76 (2%)
Query: 321 IVDKETPLYSVARIFFRATTGLLSNSVSTKLFQSVTRTLPVLSTKIKSFFSASFCTLLII 142
I ETP +S TT +S + S+T T +++T+ + SF +L+ I
Sbjct: 2 ITTSETPSHSTPSFTSSITTTEAPSSSTPSFTSSITTTDSIVTTETTYHSTPSFTSLITI 61
Query: 141 TVEVANT--SFTTPIMST 94
T +++ S+TT I ST
Sbjct: 62 TETTSHSTPSYTTSITST 79
>gi|4049900 (AF063866) ORF MSV005 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 246
Score = 33.2 bits (74), Expect = 2.1
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 14/47 (29%)
Query: 193 YQNKIFLFCFF------LYTLNHNCRSCKYFFYHTYYVY--------NRIGCI*CTNFSE 56
Y+NK+F++C + LN C++C F +YY Y RI CI C N+
Sbjct: 121 YKNKVFMYCSHCTDITEVDELNGKCKNCN-FINKSYYAYIGVLMYKKYRIKCIICGNYDY 179
Query: 55 I 53
I
Sbjct: 180 I 180
>gi|3493464 (U79117) S-layer protein [Clostridium thermocellum]
Length = 1036
Score = 32.8 bits (73), Expect = 2.7
Identities = 37/130 (28%), Positives = 68/130 (51%), Gaps = 14/130 (10%)
Query: 386 EEEGKDIKIVLPKREEESKTIEEVTTME----LEYSTIIST----IIFIKEDLLWYSACV 541
E E K + I ++ + TIEEVT ++ + YS +ST + K++ Y
Sbjct: 697 ENEMKAVTIEFEVTDKTAPTIEEVTFVDNYIYVRYSEAMSTKGNGSVLNKDN---YKLVD 753
Query: 542 ECNKKVELE-----GEGQYRCERCNNLFDKCNFRFMVTM-NVADHTGQIWLTLFDEQATK 703
+ +KKVE++ G + + + N + +T+ NV D G ++ FD +A K
Sbjct: 754 DNDKKVEIKKIELFGSDKNKVRITVDSDVDLNVDYELTIANVEDEAGNA-ISAFDVKAKK 812
Query: 704 LFKHTANELKEIGEEDSTKLQSIV 775
L + A E+ EI T+++ ++
Sbjct: 813 LSEEQAPEVSEIRIISKTEIEIVI 836
>gi|1346168|sp|P47775|GPRC_HUMAN PROBABLE G PROTEIN-COUPLED RECEPTOR GPR12 >gi|604500 (U18548)
putative GPR12 G protein coupled-receptor, ligand
unknown [Homo sapiens]
Length = 334
Score = 32.1 bits (71), Expect = 4.7
Identities = 22/54 (40%), Positives = 29/54 (52%)
Query: 294 SVARIFFRATTGLLSNSVSTKLFQSVTRTLPVLSTKIKSFFSASFCTLLIITVE 133
S+A A GL++N V L QS L + + SF SAS C+LL ITV+
Sbjct: 85 SLALADLLAGIGLITNFVFAYLLQSEATKLVTIGLIVASF-SASVCSLLAITVD 137
>gi|1763304 (U75357) myosin II [Schizosaccharomyces pombe]
Length = 1526
Score = 32.1 bits (71), Expect = 4.7
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 417 NTIFISFPSSSYQPRNSYASSNSGLITIEDEEIVDKETPLYSVARIFFRATTGLLSNSVS 238
N + + ++ P +Y S + I +E +D+ + V++IFF+A G+L+ +
Sbjct: 695 NDFRVRYEIMAHLPTGTYVESRRASVMILEELKIDEASYRIGVSKIFFKA--GVLA-ELE 751
Query: 237 TKLFQSVTRTLPVLSTKIKSF 175
+ ++ R + +L T+I+ F
Sbjct: 752 ERRVATLQRLMTMLQTRIRGF 772
>gi|4539277|emb|CAB39901| (AL049498) myosin ii [Schizosaccharomyces pombe]
Length = 1526
Score = 32.1 bits (71), Expect = 4.7
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 417 NTIFISFPSSSYQPRNSYASSNSGLITIEDEEIVDKETPLYSVARIFFRATTGLLSNSVS 238
N + + ++ P +Y S + I +E +D+ + V++IFF+A G+L+ +
Sbjct: 695 NDFRVRYEIMAHLPTGTYVESRRASVMILEELKIDEASYRIGVSKIFFKA--GVLA-ELE 751
Query: 237 TKLFQSVTRTLPVLSTKIKSF 175
+ ++ R + +L T+I+ F
Sbjct: 752 ERRVATLQRLMTMLQTRIRGF 772
>gi|2853301 (AF007194) mucin [Homo sapiens]
Length = 957
Score = 32.1 bits (71), Expect = 4.7
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 2/178 (1%)
Query: 558 TFLLHSTHALYHNRSSLIKIIVEIIVEYSNSMVVTSSIVFDSSSLLGNTIFISFPSSSYQ 379
T + +T H+ S I N+ TSSI ++ T F S +++
Sbjct: 202 TSSITTTETTSHSARSFTSSITTTETTSHNTRSFTSSITTTETNSHSTTSFTSSITTTET 261
Query: 378 PRNSYASSNSGLITIEDEEIVDKETPLYSVARIFFRATTGLLSNSVSTKLFQSVT--RTL 205
+S S +S + T E TPL+S T GL S +TK +T T
Sbjct: 262 TSHSTPSFSSSITTTE--------TPLHS--------TPGLPSWVTTTKTTSHITPGLTS 305
Query: 204 PVLSTKIKSFFSASFCTLLIITVEVANTSFTTPIMSTIGLVVFNAPTLVKL**TLGFSTS 25
+ +T+ S + F T I T E + S + STI V + T + T F+TS
Sbjct: 306 SITTTETTSHSTPGF-TSSITTTETTSESTPSLSSSTIYSTVSTSTTAI----TSHFTTS 360
>gi|3758864|emb|CAB11149| (Z98551) predicted using hexExon; MAL3P6.2 (PFC0705c), Hypothetical
protein, len: 2438 aa [Plasmodium falciparum]
Length = 2437
Score = 31.7 bits (70), Expect = 6.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 292 CCTHIF*GNNRIIIQFGFNQ-IIPKCNTN----IYQNKIFLFCFFLYTLNHNCRSC 128
CC HIF N+ ++Q+ N+ CN C +Y I F+++ + +
Sbjct: 1971 CCDHIFVNKNKHMVQYFLNKNFYTSCNIKNKCVDKNKLYYTDISTIFFYIHFKINVPKLL 2030
Query: 127 KYFFYHTYYVY 95
+ FF H Y
Sbjct: 2031 RIFFDHKVVNY 2041
>gi|1731402|sp|P50464|UN97_CAEEL HOMEOBOX PROTEIN UNC-97 >gi|1086681 (U41021) contains two LIM
domains [Caenorhabditis elegans] >gi|2661098 (AF035583)
UNC-97 [Caenorhabditis elegans]
Length = 348
Score = 31.7 bits (70), Expect = 6.1
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 536 CVECNKKVELEGEGQYRCERCNNLFD 613
C ECN++ + G G+Y C +C+ + D
Sbjct: 129 CRECNEREKAAGHGRYVCHKCHAMID 154
>gi|419174|pir||B60013 orf2 protein - fowlpox virus (fragment) >gi|4377549|emb|CAA36695|
(X52461) orf2 [Fowlpox virus]
Length = 339
Score = 31.7 bits (70), Expect = 6.1
Identities = 30/150 (20%), Positives = 60/150 (40%)
Query: 504 KIIVEIIVEYSNSMVVTSSIVFDSSSLLGNTIFISFPSSSYQPRNSYASSNSGLITIEDE 325
K+I I YSN T+ IV D +LG I ++ +Q +NS +I ++
Sbjct: 79 KVITSINNMYSNMKKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILMENNSFIIRTINK 138
Query: 324 EIVDKETPLYSVARIFFRATTGLLSNSVSTKLFQSVTRTLPVLSTKIKSFFSASFCTLLI 145
+ D + +I T ++S+ + + ++ V S + F FC + I
Sbjct: 139 VLADSN----YIIKIIALFNTDVVSDKIKLEEYKDVFS----FSKENVIFGIKCFCDITI 190
Query: 144 ITVEVANTSFTTPIMSTIGLVVFNAPTLVK 55
++ N + + + ++ + VK
Sbjct: 191 DGIDQINNKYVSFFKKVLPNIILFQTSCVK 220
>gi|4455288|emb|CAB36824| (AL035527) putative protein (fragment) [Arabidopsis thaliana]
Length = 372
Score = 31.3 bits (69), Expect = 8.0
Identities = 17/76 (22%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 2 NSEVELTAEVENPKVHYNFTKVGALNTT-----------NPIVDIIGVVKEVFATSTVMI 148
N ++ T + + YN G + T+ N ++++ ++ + F+ V +
Sbjct: 64 NIDIRDTVKYKEVMKQYNLGPNGGILTSLNLFATKFDEVNIPLELVQMITDFFSHCVVSV 123
Query: 149 KSVQKEAEKKDFILVDKTGSVRVTLWN 229
++K A++ D++LVD G + + W+
Sbjct: 124 --IEKRADQLDYVLVDTPGQIEIFTWS 148
>gi|2894558|emb|CAA17147| (AL021890) putative protein [Arabidopsis thaliana]
Length = 373
Score = 31.3 bits (69), Expect = 8.0
Identities = 17/76 (22%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 2 NSEVELTAEVENPKVHYNFTKVGALNTT-----------NPIVDIIGVVKEVFATSTVMI 148
N ++ T + + YN G + T+ N ++++ ++ + F+ V +
Sbjct: 65 NIDIRDTVKYKEVMKQYNLGPNGGILTSLNLFATKFDEVNIPLELVQMITDFFSHCVVSV 124
Query: 149 KSVQKEAEKKDFILVDKTGSVRVTLWN 229
++K A++ D++LVD G + + W+
Sbjct: 125 --IEKRADQLDYVLVDTPGQIEIFTWS 149
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118017236
Number of Sequences: 368476
Number of extensions: 2120292
Number of successful extensions: 8955
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 8901
Number of HSP's gapped (non-prelim): 55
length of query: 258
length of database: 112640273
effective HSP length: 54
effective length of query: 204
effective length of database: 92742569
effective search space: 18919484076
effective search space used: 18919484076
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)