BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-11F
(841 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2827552|emb|CAA16560| (AL021635) predicted protein [Arabidops... 74 1e-12
gi|466053|sp|P34679|YO41_CAEEL HYPOTHETICAL 68.7 KD PROTEIN ZK75... 68 6e-11
gi|3219912|sp|O14345|YB3F_SCHPO HYPOTHETICAL 38.1 KD PROTEIN C2F... 68 1e-10
gi|1176580|sp|P42836|YN66_YEAST HYPOTHETICAL 39.2 KD PROTEIN IN ... 68 1e-10
gi|3860313|emb|CAA10124| (AJ012683) hypothetical protein [Cicer ... 67 1e-10
gi|3845261 (AE001414) metal binding protein (DHHC domain) [Plasm... 66 2e-10
gi|3881079|emb|CAA21738| (AL032657) cDNA EST yk207f6.5 comes fro... 66 4e-10
gi|3873666|emb|CAA93457| (Z69634) cDNA EST EMBL:C11678 comes fro... 65 6e-10
gi|1255324 (U51999) C43H6.7 gene product [Caenorhabditis elegans] 65 7e-10
gi|2132817|pir||S61981 probable membrane protein YOL003c - yeast... 64 1e-09
gi|3417417|emb|CAA20305| (AL031261) hypothetical protein [Schizo... 64 1e-09
gi|4220527|emb|CAA23000| (AL035356) putative protein [Arabidopsi... 64 1e-09
gi|3874398|emb|CAB03897| (Z81473) cDNA EST yk435d2.5 comes from ... 64 1e-09
gi|3947545|emb|CAB03898| (Z81473) cDNA EST EMBL:D75353 comes fro... 64 1e-09
gi|2252856 (AF013294) No definition line found [Arabidopsis thal... 63 2e-09
gi|1077581|pir||S52691 probable membrane protein YDR126w - yeast... 62 4e-09
gi|747900|emb|CAA88679| (Z48758) unknown [Saccharomyces cerevisiae] 62 4e-09
gi|470362 (U00046) weak similarity to ZK757.1 [Caenorhabditis el... 61 8e-09
gi|1363741|pir||S59392 probable membrane protein YLR246w - yeast... 60 2e-08
gi|3877900|emb|CAB01873| (Z79600) Similarity with yeast hypothet... 59 3e-08
gi|2773183 (AF039720) No definition line found [Caenorhabditis e... 58 7e-08
gi|3402718 (AC004261) hypothetical protein [Arabidopsis thaliana] 57 1e-07
gi|3873647|emb|CAA94868| (Z71177) Similarity with 39.2kd yeast p... 57 2e-07
gi|3080532|emb|CAA18660| (AL022600) hypothetical protein [Schizo... 57 2e-07
gi|2342647 (U90653) DHHC-domain-containing cysteine-rich protein... 54 1e-06
gi|1175373|sp|Q09701|YA2A_SCHPO HYPOTHETICAL 72.5 KD PROTEIN C2F... 54 1e-06
gi|3845106 (AE001375) metal binding protein (DHHC domain) [Plasm... 53 3e-06
gi|1065487 (U40415) similar to C. elegans hypothetical protein C... 50 2e-05
gi|665658|emb|CAA88207| (Z48179) unknown [Saccharomyces cerevisiae] 50 3e-05
gi|3875664|emb|CAB05476| (Z83104) predicted using Genefinder [Ca... 50 3e-05
gi|2131507|pir||S69627 hypothetical protein YDR459c - yeast (Sac... 45 0.001
gi|2244865|emb|CAB10287| (Z97337) hypothetical protein [Arabidop... 44 0.002
gi|3859602 (AF104919) contains similarity to human DHHC-domain-c... 42 0.005
gi|4226075 (AF125443) contains similarity to ankyrin repeats (PF... 41 0.010
gi|746482 (U23513) D2021.2 [Caenorhabditis elegans] 40 0.023
gi|2459444 (AC002332) hypothetical protein [Arabidopsis thaliana] 36 0.26
gi|1171602|emb|CAA64586| (X95276) rpl6 [Plasmodium falciparum] 35 0.59
gi|1710670|sp|P21421|RPOB_PLAFA DNA-DIRECTED RNA POLYMERASE BETA... 35 0.78
gi|3979963|emb|CAA21616| (AL032637) predicted using Genefinder; ... 32 5.2
gi|2435573 (AF026209) No definition line found [Caenorhabditis e... 32 6.7
gi|3845167 (AE001390) hypothetical protein [Plasmodium falciparum] 31 8.8
>gi|2827552|emb|CAA16560| (AL021635) predicted protein [Arabidopsis thaliana]
Length = 820
Score = 73.7 bits (178), Expect = 1e-12
Identities = 29/48 (60%), Positives = 33/48 (68%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C CN YKPPRSHHCS C +C LKMDHHC + C+ +NYK F FL
Sbjct: 642 CRKCNQYKPPRSHHCSVCGRCILKMDHHCVWVVNCVGANNYKSFLLFL 689
>gi|466053|sp|P34679|YO41_CAEEL HYPOTHETICAL 68.7 KD PROTEIN ZK757.1 IN CHROMOSOME III
>gi|482217|pir||S41011 hypothetical protein ZK757.1 -
Caenorhabditis elegans >gi|3881771|emb|CAA82387|
(Z29121) ZK757.1 [Caenorhabditis elegans]
Length = 589
Score = 68.3 bits (164), Expect = 6e-11
Identities = 27/51 (52%), Positives = 33/51 (63%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLVLN 3
C+ C KP RSHHCS C +C LK DHHC + C+ F NYK+F FL L+
Sbjct: 440 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLALS 490
>gi|3219912|sp|O14345|YB3F_SCHPO HYPOTHETICAL 38.1 KD PROTEIN C2F12.15C IN CHROMOSOME II
>gi|2239244|emb|CAB10162| (Z97211) hypothetical protein
[Schizosaccharomyces pombe]
Length = 329
Score = 67.5 bits (162), Expect = 1e-10
Identities = 25/45 (55%), Positives = 29/45 (63%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFY 21
C C YK RSHHCS C KC L+MDHHC C+ F N+KFF+
Sbjct: 99 CEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFF 143
>gi|1176580|sp|P42836|YN66_YEAST HYPOTHETICAL 39.2 KD PROTEIN IN EGT2-KRE1 INTERGENIC REGION
>gi|1362346|pir||S55863 probable membrane protein
YNL326c - yeast (Saccharomyces cerevisiae)
>gi|633660|emb|CAA86372| (Z46259) N0325 [Saccharomyces
cerevisiae] >gi|1302443|emb|CAA96258| (Z71602) ORF
YNL326c [Saccharomyces cerevisiae]
Length = 336
Score = 67.5 bits (162), Expect = 1e-10
Identities = 27/49 (55%), Positives = 30/49 (61%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C VC+ +KP R HHCS C C LKMDHHC C F N KFF FL+
Sbjct: 106 CQVCHVWKPDRCHHCSSCDVCILKMDHHCPWFAECTGFRNQKFFIQFLM 154
>gi|3860313|emb|CAA10124| (AJ012683) hypothetical protein [Cicer arietinum]
Length = 93
Score = 67.1 bits (161), Expect = 1e-10
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 146 CNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C KPPR HHCS C++C LKMDHHC + C+ NYK+F FL+
Sbjct: 2 CQNGKPPRCHHCSICQRCVLKMDHHCIWVVNCVGARNYKYFLLFLL 47
>gi|3845261 (AE001414) metal binding protein (DHHC domain) [Plasmodium
falciparum]
Length = 101
Score = 66.3 bits (159), Expect = 2e-10
Identities = 24/44 (54%), Positives = 30/44 (67%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFF 24
C CN K RSHHCS C KC +KMDHHCF + +C+ +N K+F
Sbjct: 38 CKKCNLLKIKRSHHCSVCDKCIMKMDHHCFWINSCVGLYNQKYF 81
>gi|3881079|emb|CAA21738| (AL032657) cDNA EST yk207f6.5 comes from this gene; cDNA EST
yk201f11.5 comes from this gene; cDNA EST yk207f6.3
comes from this gene [Caenorhabditis elegans]
Length = 368
Score = 65.6 bits (157), Expect = 4e-10
Identities = 23/48 (47%), Positives = 28/48 (57%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C C Y+PPR HC+ C C L DHHC +G CI NY +FY F+
Sbjct: 166 CTTCRLYRPPRCSHCAICDNCVLMFDHHCPWVGNCIGLRNYTYFYRFV 213
>gi|3873666|emb|CAA93457| (Z69634) cDNA EST EMBL:C11678 comes from this gene; cDNA EST
EMBL:C13926 comes from this gene; cDNA EST yk211g12.3
comes from this gene; cDNA EST yk211g12.5 comes from
this gene; cDNA EST yk362e5.3 comes from this gene; cDNA
ES... >gi|3878711|emb|CAA92831| (Z68507) cDNA EST
EMBL:C11678 comes from this gene; cDNA EST EMBL:C13926
comes from this gene; cDNA EST yk211g12.3 comes from
this gene; cDNA EST yk211g12.5 comes from this gene;
cDNA EST yk362e5.3 comes from this gene; cDNA ES...
Length = 447
Score = 65.2 bits (156), Expect = 6e-10
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C CN +K PRSHHCS C +C +KMDHHC + C+ N+++F FL
Sbjct: 108 CVPCNGFKVPRSHHCSKCDRCCMKMDHHCPWINNCVGHRNHQYFLRFL 155
>gi|1255324 (U51999) C43H6.7 gene product [Caenorhabditis elegans]
Length = 306
Score = 64.8 bits (155), Expect = 7e-10
Identities = 22/48 (45%), Positives = 31/48 (63%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C+ CN +K +HHCS C KC L MDHHC + C+ HN++ F+ F+
Sbjct: 105 CSKCNYWKSDNAHHCSVCEKCVLGMDHHCIWINQCVGLHNHRHFFLFI 152
>gi|2132817|pir||S61981 probable membrane protein YOL003c - yeast (Saccharomyces
cerevisiae) >gi|1150993 (U43491) hypothetical protein
UNE378 [Saccharomyces cerevisiae]
>gi|1419765|emb|CAA99002| (Z74745) ORF YOL003c
[Saccharomyces cerevisiae]
Length = 378
Score = 64.4 bits (154), Expect = 1e-09
Identities = 25/48 (52%), Positives = 28/48 (58%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C C +YKP RSHHC C +C L MDHHC C+ F NY F FL
Sbjct: 80 CKKCQSYKPERSHHCKTCNQCVLMMDHHCPWTMNCVGFANYPHFLRFL 127
>gi|3417417|emb|CAA20305| (AL031261) hypothetical protein [Schizosaccharomyces pombe]
Length = 350
Score = 64.0 bits (153), Expect = 1e-09
Identities = 22/49 (44%), Positives = 32/49 (64%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C+ C+ Y+PPR+ HC C C +DHHC L TCI NY++++ FL+
Sbjct: 184 CHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLL 232
>gi|4220527|emb|CAA23000| (AL035356) putative protein [Arabidopsis thaliana]
Length = 374
Score = 64.0 bits (153), Expect = 1e-09
Identities = 22/48 (45%), Positives = 30/48 (61%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C+ C Y+PPR HCS C C + DHHC +G CI NY++F+ F+
Sbjct: 138 CDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFV 185
>gi|3874398|emb|CAB03897| (Z81473) cDNA EST yk435d2.5 comes from this gene; cDNA EST
yk232f11.3 comes from this gene; cDNA EST yk232f11.5
comes from this gene; cDNA EST yk265e1.5 comes from this
gene; cDNA EST yk435d2.3 comes from this gene
[Caenorhabdi...
Length = 302
Score = 64.0 bits (153), Expect = 1e-09
Identities = 31/94 (32%), Positives = 50/94 (52%)
Query: 293 ILSTEDESTINKFPHIQSDKIEVSLEDVNPFVEXXXXXXXXXXXXICNVCNTYKPPRSHH 114
I S++ ++T N P SD+ + S E+ F +C C++ +PPR+HH
Sbjct: 72 ISSSKGQNTPN--PVFSSDEEDESDEEA-VFRHDHLNRSSATEWTMCTRCDSLRPPRAHH 128
Query: 113 CSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C C++C KMDHHC + C+ +N K+F F+
Sbjct: 129 CRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFI 162
>gi|3947545|emb|CAB03898| (Z81473) cDNA EST EMBL:D75353 comes from this gene; cDNA EST
EMBL:D72468 comes from this gene [Caenorhabditis
elegans]
Length = 240
Score = 64.0 bits (153), Expect = 1e-09
Identities = 31/94 (32%), Positives = 50/94 (52%)
Query: 293 ILSTEDESTINKFPHIQSDKIEVSLEDVNPFVEXXXXXXXXXXXXICNVCNTYKPPRSHH 114
I S++ ++T N P SD+ + S E+ F +C C++ +PPR+HH
Sbjct: 10 ISSSKGQNTPN--PVFSSDEEDESDEEA-VFRHDHLNRSSATEWTMCTRCDSLRPPRAHH 66
Query: 113 CSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C C++C KMDHHC + C+ +N K+F F+
Sbjct: 67 CRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFI 100
>gi|2252856 (AF013294) No definition line found [Arabidopsis thaliana]
Length = 262
Score = 63.2 bits (151), Expect = 2e-09
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 10/48 (20%)
Query: 155 CNVCNTYKPPRSHHCSFCR----------KCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C C KPPR HHCS C+ +C LKMDHHC + C+ NYKFF FL
Sbjct: 48 CTKCRNVKPPRCHHCSVCKAKSDLFILCQRCVLKMDHHCVWIVNCVGARNYKFFLLFL 105
>gi|1077581|pir||S52691 probable membrane protein YDR126w - yeast (Saccharomyces
cerevisiae)
Length = 336
Score = 62.5 bits (149), Expect = 4e-09
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLVLN 3
C+ C KP RS HCS C +C L DHHC + CI NY FY FL+ N
Sbjct: 136 CSTCRIVKPARSKHCSICNRCVLVADHHCIWINNCIGKGNYLQFYLFLISN 186
>gi|747900|emb|CAA88679| (Z48758) unknown [Saccharomyces cerevisiae]
Length = 264
Score = 62.5 bits (149), Expect = 4e-09
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLVLN 3
C+ C KP RS HCS C +C L DHHC + CI NY FY FL+ N
Sbjct: 136 CSTCRIVKPARSKHCSICNRCVLVADHHCIWINNCIGKGNYLQFYLFLISN 186
>gi|470362 (U00046) weak similarity to ZK757.1 [Caenorhabditis elegans]
Length = 210
Score = 61.3 bits (146), Expect = 8e-09
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C +CN KPPR HHC C C +MDHHC L CI N+K+F FLV
Sbjct: 84 CQLCNYRKPPRWHHCRRCNLCVHRMDHHCPILQLCIHSGNHKYFLLFLV 132
>gi|1363741|pir||S59392 probable membrane protein YLR246w - yeast (Saccharomyces
cerevisiae) >gi|662337 (U20865) Ylr246wp [Saccharomyces
cerevisiae]
Length = 359
Score = 60.1 bits (143), Expect = 2e-08
Identities = 23/49 (46%), Positives = 29/49 (58%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C C ++PPRS HCS C C + DHHC + CI NY+FF FL+
Sbjct: 175 CPSCRIWRPPRSSHCSTCNVCVMVHDHHCIWVNNCIGKRNYRFFLIFLL 223
>gi|3877900|emb|CAB01873| (Z79600) Similarity with yeast hypothetical protein C2F7.10 (Swiss
Prot accession number Q09701) [Caenorhabditis elegans]
Length = 239
Score = 59.3 bits (141), Expect = 3e-08
Identities = 22/48 (45%), Positives = 28/48 (57%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C CN +K P + HC C KC +MDHHC +G C+ HN F+ FL
Sbjct: 42 CIKCNNWKGPSTSHCKACDKCIYRMDHHCPHIGQCVGAHNQSHFFLFL 89
>gi|2773183 (AF039720) No definition line found [Caenorhabditis elegans]
Length = 885
Score = 58.2 bits (138), Expect = 7e-08
Identities = 22/47 (46%), Positives = 28/47 (58%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNF 15
C C + KP R+HHCS C +C +MDHHC + C+ N KFF F
Sbjct: 86 CQKCASIKPDRAHHCSVCERCIRRMDHHCPWVNNCVGEGNQKFFVLF 132
>gi|3402718 (AC004261) hypothetical protein [Arabidopsis thaliana]
Length = 340
Score = 57.4 bits (136), Expect = 1e-07
Identities = 21/44 (47%), Positives = 27/44 (60%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFF 24
C+ C Y+PPR+ HCS C C + DHHC +G CIA Y+ F
Sbjct: 166 CDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIALTTYENF 209
>gi|3873647|emb|CAA94868| (Z71177) Similarity with 39.2kd yeast protein (Swiss Prot accession
number P42836) [Caenorhabditis elegans]
Length = 600
Score = 57.0 bits (135), Expect = 2e-07
Identities = 21/49 (42%), Positives = 29/49 (58%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C C KP R+ HCS C KC +K DHHC + C+ NYK+F +++
Sbjct: 405 CYECGHIKPDRARHCSSCGKCCIKYDHHCPWINMCVTHVNYKYFLLYII 453
>gi|3080532|emb|CAA18660| (AL022600) hypothetical protein [Schizosaccharomyces pombe]
Length = 356
Score = 56.6 bits (134), Expect = 2e-07
Identities = 20/49 (40%), Positives = 28/49 (56%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C+ C KP RS HC C C K DHHC + C+ +N ++F+ FL+
Sbjct: 160 CSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLL 208
>gi|2342647 (U90653) DHHC-domain-containing cysteine-rich protein [Homo
sapiens]
Length = 217
Score = 54.3 bits (128), Expect = 1e-06
Identities = 21/44 (47%), Positives = 24/44 (53%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFF 24
CN+CN RS HCS C KC DHHC L C+ NY+ F
Sbjct: 136 CNLCNVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLF 179
>gi|1175373|sp|Q09701|YA2A_SCHPO HYPOTHETICAL 72.5 KD PROTEIN C2F7.10 IN CHROMOSOME I
>gi|2130379|pir||S58154 hypothetical protein SPAC2F7.10
- fission yeast (Schizosaccharomyces pombe)
>gi|1052793|emb|CAA90497| (Z50142) unknown
[Schizosaccharomyces pombe]
Length = 642
Score = 53.9 bits (127), Expect = 1e-06
Identities = 20/48 (41%), Positives = 28/48 (57%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
C C KPPRS+HC C++C + DHHC G C+ N++ F F+
Sbjct: 402 CLKCFQVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFV 449
>gi|3845106 (AE001375) metal binding protein (DHHC domain) [Plasmodium
falciparum]
Length = 78
Score = 52.7 bits (124), Expect = 3e-06
Identities = 20/44 (45%), Positives = 26/44 (58%)
Query: 143 NTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFL 12
N +P RS HCS+C C + DHHCF L CI +N ++ FL
Sbjct: 10 NPIRPARSKHCSYCSSCISRYDHHCFLLNNCIGGYNNMYYLVFL 53
>gi|1065487 (U40415) similar to C. elegans hypothetical protein C27F7.10
(SP:P34679) [Caenorhabditis elegans]
Length = 232
Score = 50.4 bits (118), Expect = 2e-05
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 6/38 (15%)
Query: 125 RSHHCSFCRKCYLKMDHHCFPLGTCIAFHN------YKFFYNFL 12
RSHHC C+ C L+ DHHCF G C+ N + +F NFL
Sbjct: 78 RSHHCPLCKMCVLRKDHHCFITGACVGLGNQVCELLFLYFCNFL 121
>gi|665658|emb|CAA88207| (Z48179) unknown [Saccharomyces cerevisiae]
Length = 190
Score = 49.6 bits (116), Expect = 3e-05
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 122 SHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLVLN 3
S HCS C +C L DHHC + CI NY FY FL+ N
Sbjct: 1 SKHCSICNRCVLVADHHCIWINNCIGKGNYLQFYLFLISN 40
>gi|3875664|emb|CAB05476| (Z83104) predicted using Genefinder [Caenorhabditis elegans]
Length = 295
Score = 49.6 bits (116), Expect = 3e-05
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFF 24
C+ C++ P R+HHC C C L+ DHHC C+ N ++F
Sbjct: 105 CHSCHSMSPLRAHHCPVCDVCILRRDHHCSFGAVCVGHFNQRYF 148
>gi|2131507|pir||S69627 hypothetical protein YDR459c - yeast (Saccharomyces cerevisiae)
>gi|927749 (U33050) Ydr459cp; CAI: 0.12 [Saccharomyces
cerevisiae]
Length = 374
Score = 44.5 bits (103), Expect = 0.001
Identities = 18/47 (38%), Positives = 25/47 (52%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNF 15
C+ C + K R+HH S C + DH+C +GT I NY+ F F
Sbjct: 131 CSECQSLKMERTHHSSELGHCIPRFDHYCMWIGTVIGRDNYRLFVQF 177
>gi|2244865|emb|CAB10287| (Z97337) hypothetical protein [Arabidopsis thaliana]
Length = 736
Score = 43.8 bits (101), Expect = 0.002
Identities = 18/51 (35%), Positives = 24/51 (46%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLVLN 3
C +CN S HC C KC DHHC L C+ NY F + + ++
Sbjct: 176 CTLCNAEVRKFSKHCRSCDKCVDCFDHHCRWLNNCVGRKNYMTFISLMAVS 226
>gi|3859602 (AF104919) contains similarity to human DHHC-domain-containing
cysteine-rich protein (GB:U90653) and several S.
cerevisiae probable membrane proteins (GB:U20865,
Z48758, U43491) [Arabidopsis thaliana]
Length = 513
Score = 42.2 bits (97), Expect = 0.005
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C++C+ S HC C +C DHHC L C+ NY F +V
Sbjct: 151 CSLCDLEVKRSSKHCRTCNRCVEGFDHHCRWLNNCVGKKNYTTFILLMV 199
>gi|4226075 (AF125443) contains similarity to ankyrin repeats (PFam: PF00023,
score=77.6, E=2.5e-19, n=4) [Caenorhabditis elegans]
Length = 783
Score = 41.0 bits (94), Expect = 0.010
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNF 15
C C K SHHCS C KC DHHC + C+ N + F F
Sbjct: 543 CFTCWIPKTSSSHHCSQCDKCVDGFDHHCPWIHKCVYRKNLRAFVFF 589
>gi|746482 (U23513) D2021.2 [Caenorhabditis elegans]
Length = 272
Score = 39.9 bits (91), Expect = 0.023
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 155 CNVCNTYKPPRSHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFFYNFLV 9
C C K + HC+ C C DHHC L +C+ N + F F++
Sbjct: 108 CFTCFIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCVTRRNMREFIMFVI 156
>gi|2459444 (AC002332) hypothetical protein [Arabidopsis thaliana]
Length = 567
Score = 36.4 bits (82), Expect = 0.26
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 155 CNVCNT----YKPPR--SHHCSFCRKCYLKMDHHCFPLGTCIAFHNYKFF 24
C++CN + R S HC C KC DHHC L C+ NY F
Sbjct: 132 CSLCNAEHILFLKVRMFSKHCRSCGKCVDGFDHHCRWLNNCVGQKNYISF 181
>gi|1171602|emb|CAA64586| (X95276) rpl6 [Plasmodium falciparum]
Length = 168
Score = 35.2 bits (79), Expect = 0.59
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 615 NFIYIYISN-RIFDI-FLNDI-LYFIYQQIIMFVFLFFQIIIQHV*RKYYSQKFYFGINV 445
N+IYI+ +N +I++I LN+I +YFI I F+F ++ I ++ K +K+ +N+
Sbjct: 29 NYIYIFKNNNKIYNINILNNIYIYFIKNNIYYFIFKMYKYIFSNIFNKIQYKKYQLILNI 88
>gi|1710670|sp|P21421|RPOB_PLAFA DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|587604|emb|CAA53232|
(X75544) beta subunit RNA polymerase [Plasmodium
falciparum] >gi|1171587|emb|CAA64572| (X95275) rpoB
[Plasmodium falciparum]
Length = 1024
Score = 34.8 bits (78), Expect = 0.78
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 551 KYNISFKKISNILFEIYIYMKFYGSFAV-DVFNKKCFSIID 670
K+N + + NILF I + +Y F + +++NKK +SIID
Sbjct: 233 KFNNIYINLLNILFSIKLNFSYYSDFYINNIYNKKFYSIID 273
>gi|3979963|emb|CAA21616| (AL032637) predicted using Genefinder; cDNA EST yk437c11.5 comes
from this gene; cDNA EST yk437c11.3 comes from this gene
[Caenorhabditis elegans]
Length = 296
Score = 32.1 bits (71), Expect = 5.2
Identities = 18/44 (40%), Positives = 22/44 (49%), Gaps = 12/44 (27%)
Query: 146 CNTYKPPRSHHCSF------------CRKCYLKMDHHCFPLGTCIAFHNYKFFYNF 15
C TYK HHCS CR HHC + A+ + F+YNF
Sbjct: 163 CRTYKYNNFHHCSGVIYHKCSTIHDDCRTYKYNNFHHCSGVINFFAYIDLGFYYNF 218
>gi|2435573 (AF026209) No definition line found [Caenorhabditis elegans]
Length = 366
Score = 31.7 bits (70), Expect = 6.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 658 KTFFIKNIDSKGSIKFHIYIYFK*NIRYFFK 566
K F ++NI++ G IKFH++ F + YFFK
Sbjct: 313 KEFCLRNINTNGIIKFHLFFEFN-FLTYFFK 342
>gi|3845167 (AE001390) hypothetical protein [Plasmodium falciparum]
Length = 1802
Score = 31.3 bits (69), Expect = 8.8
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 368 LTYDHLYNIILQIHSMNI**LQELSKTLMPK*NFCE*YFLQTCWXXXXXXXXXXXXXC*Y 547
L+YDH NI LQ Q++ K L FCE FL T
Sbjct: 869 LSYDHTINIFLQ---------QDILKCL----KFCEKMFLST------------------ 897
Query: 548 MKYNISFKKISN--ILFEIYIYMKFYGSFAVDVFNKKCFSIIDIK 676
+N + +SN IL I IY+ +Y F F KC + K
Sbjct: 898 -NHNFYDENLSNHHILILINIYIYYYQKFLHSPFLYKCLQYLSKK 941
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139453229
Number of Sequences: 368476
Number of extensions: 2607144
Number of successful extensions: 6163
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6088
Number of HSP's gapped (non-prelim): 57
length of query: 280
length of database: 112640273
effective HSP length: 54
effective length of query: 225
effective length of database: 92742569
effective search space: 20867078025
effective search space used: 20867078025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)