BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII22R
(879 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1088430|dbj|BAA04740| (D21196) ORF1740; The deduced amino aci... 39 0.056
gi|4493950|emb|CAB38986| (AL034556) predicted using hexExon; MAL... 38 0.073
gi|4049878 (AF063866) ORF MSV035 hypothetical protein [Melanoplu... 38 0.095
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 37 0.16
gi|464683|sp|P33540|RPOP_NEUCR PROBABLE DNA-DIRECTED RNA POLYMER... 36 0.28
gi|1449393|emb|CAA39045| (X55361) putative RNA polymerase [Neuro... 36 0.28
gi|141190|sp|P23217|YP23_STAAU HYPOTHETICAL TRANSCRIPTIONAL REGU... 35 0.63
gi|4493993|emb|CAB39052| (AL034559) predicted using hexExon; MAL... 35 0.83
gi|1363459|pir||S49394 HsdR1 protein - Mycoplasma pulmonis (SGC3... 34 1.9
gi|4493896|emb|CAB39005| (AL034558) predicted using hexExon; MAL... 34 1.9
gi|140550|sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF ... 33 2.4
gi|4493986|emb|CAB39045| (AL034559) predicted using hexExon; MAL... 33 3.2
gi|3764015|emb|CAA15608| (AL008970) predicted using hexExon; MAL... 33 3.2
gi|3660712 (AF063439) period [Plagodis fervidaria] 33 3.2
gi|4049787 (AF063866) ORF MSV218 hypothetical protein [Melanoplu... 33 3.2
gi|2581809 (AF003541) endonuclease (R) subunit homolog [Mycoplas... 32 4.2
gi|2496193|sp|Q59029|YG35_METJA HYPOTHETICAL PROTEIN MJ1635 >gi|... 32 4.2
gi|3769486 (AF074946) DNA polymerase [hemorrhagic enteritis virus] 32 4.2
gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P... 32 5.5
gi|586874|sp|P37544|YABC_BACSU HYPOTHETICAL 33.0 KD PROTEIN IN X... 32 5.5
gi|2688263 (AE001141) B. burgdorferi predicted coding region BB0... 32 5.5
gi|476353|pir||A46350 RNA-directed RNA polymerase (EC 2.7.7.48) ... 32 7.2
gi|3327942 (AF053771) transcriptional regulator QacR [Staphyloco... 32 7.2
gi|4098866 (U80927) unknown [Dictyostelium discoideum] 32 7.2
gi|1022726 (U35635) unknown [Staphylococcus haemolyticus] 32 7.2
gi|139144|sp|P09498|RRPO_WCMVM RNA REPLICATION PROTEIN (147 KD P... 32 7.2
gi|139145|sp|P15402|RRPO_WCMVO RNA REPLICATION PROTEIN (147 KD P... 32 7.2
gi|3334405|sp|O23948|VATE_GOSHI VACUOLAR ATP SYNTHASE SUBUNIT E ... 32 7.2
gi|84210|pir||S10439 DNA-directed RNA polymerase (EC 2.7.7.6) be... 31 9.4
gi|2507353|sp|P21422|RPOC_PLAFA DNA-DIRECTED RNA POLYMERASE BETA... 31 9.4
gi|3845297 (AE001421) hypothetical protein [Plasmodium falciparum] 31 9.4
gi|3647346|emb|CAB10570| (Z97348) predicted using hexExon; MAL3P... 31 9.4
gi|731972|sp|P40309|YJJ4_YEAST HYPOTHETICAL 97.1 KD PROTEIN IN B... 31 9.4
>gi|1088430|dbj|BAA04740| (D21196) ORF1740; The deduced amino acid sequence from
region(11558..11779) is weakly homologous to the
C-terminus 58 amino acids of ribosomal protein S3
[Dictyostelium discoideum]
Length = 1740
Score = 38.7 bits (88), Expect = 0.056
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 801 LFECKSISDISNELSEYLKYLEIFLKDLINE-----CTTHSRRYFEIKRLSEKKYHNKIK 637
L E K I+D +E LKYLE +L++L T H+R Y R KK KIK
Sbjct: 1304 LIERKGIADEPSE----LKYLEEYLQNLTTRLPAKYVTAHARNYRRTSRTVIKK-KQKIK 1358
Query: 636 NNFVRKIFYKKNLNSLKFIKKIEAL-------------AEYNLNRLKKTXXILYIEHSRM 496
+RK YK +S K ++KI ++ +L R K + +H +
Sbjct: 1359 PRNIRK--YKIKKSSRKVLEKIRSIYSIGVRKRFKYRKTPLSLKRSTKISRKILQKHRKA 1416
Query: 495 FPNDYEIIMNSNITDYYQEFIKTTINNIIL 406
+I + YY F K + I+L
Sbjct: 1417 KKQGLKIEKPLILVSYYYYFKKLRYDRIVL 1446
>gi|4493950|emb|CAB38986| (AL034556) predicted using hexExon; MAL3P5.4 (PFC0590c),
Hypothetical protein, len: 1828 aa [Plasmodium
falciparum]
Length = 1827
Score = 38.3 bits (87), Expect = 0.073
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 768 NELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKKNLNSL 589
N + Y Y ++ + +N T Y + K+Y+ KIKN+ ++K KK + SL
Sbjct: 71 NNNNSYFSYCNVYKNNDVNNNYTAYNYYINNPKNKLKEYYEKIKNHVIKK---KKKIFSL 127
Query: 588 KFI--KKIEALAEY------NLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQEFI 433
KF K+ E +Y + + +K +L+ + + I N+ I Y + F
Sbjct: 128 KFSQNKRNEKKKKYFFINFTSFHDIKDNIKVLF---------NIDYIENNIIYSYIKSFK 178
Query: 432 KT-TINNIILLST 397
+T I I LL T
Sbjct: 179 RTPPITKIYLLGT 191
>gi|4049878 (AF063866) ORF MSV035 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 439
Score = 37.9 bits (86), Expect = 0.095
Identities = 43/173 (24%), Positives = 80/173 (45%), Gaps = 2/173 (1%)
Query: 627 VRKIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDY 448
+ K YKK N+L K ++ ++N+N K + ++ +I+N+NI Y
Sbjct: 120 IYKNIYKKYKNTLLCNKLTNSVIQHNININK------ILPFVKLNDEQINLILNNNI--Y 171
Query: 447 YQEFIKTTINNIILLSTVNQ-IYNCFSEIENYIIEAFFILYQIERILTSIICNDRS*EIS 271
IK + N I +N+ YN + + I + +F ++I++IL +II ND
Sbjct: 172 KHVLIKMLLYNDISSDIINKNKYNILNAL-LLINKVYFSHHKIKKILLNIISNDIEYTKI 230
Query: 270 LPCGYD*MNMHTDFAEFLDIYDFMRYIFINTQLQKIAK-VEKKYYKNLGMTINYN 109
L ++ + + L+I++ + + Q Q I+ + KYY + IN N
Sbjct: 231 LIFNFNLNEYY--ISNILNIHNDKNILSLMLQTQNISNHIIDKYYDEIIELINCN 283
Score = 31.3 bits (69), Expect = 9.4
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 774 ISNELSEYLKYL-EIFLKDLINECTTHSRRYFEIKRLSEKKYHN-KIKNNFVRKIFYKKN 601
I ++Y KY+ EIFLK++ NEC I + KY N KI NN ++ I +N
Sbjct: 357 IPKMFNKYYKYIYEIFLKNIDNEC---------IINILYNKYKNYKIFNNILKYIL--EN 405
Query: 600 LNSLKFIKKIEALAEYNLNR 541
+N+ ++K + NL +
Sbjct: 406 INT--YVKLYTLIMNVNLKQ 423
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 37.1 bits (84), Expect = 0.16
Identities = 59/240 (24%), Positives = 101/240 (41%), Gaps = 22/240 (9%)
Query: 774 ISNELSEYLKYLEIFLKDLINECTTHSRRYFEIK--RLSEKKYHNK--IKNNFVRKIFYK 607
I N +S+ KY L ++I + + +Y+ +L K HNK + N + ++Y
Sbjct: 412 IYNSISKNFKYN---LNNIIIKYLNNVIKYYNYSNIQLLIKNIHNKWILYNIYTYYLYYY 468
Query: 606 KNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNI----TDYY-- 445
+KF N N K I + +F N Y I N+N ++YY
Sbjct: 469 H----IKFYNLYNKGIILNNNNNKYNVIYFLINYFNLFSNYYYKIYNNNYNFINSNYYFK 524
Query: 444 -QEFIKTTINNIILLSTVNQIYNCFSEIENYIIEAFFILYQIERILTSIICNDRS*EISL 268
FI NNI +L+ + + N F + Y + F L I I+ N
Sbjct: 525 KMNFILKNFNNIQILNKLFYVNNIFIYYK-YEKKLFIYLNIINNIIIKKYLN------FY 577
Query: 267 PCGYD*MNMHTDFAEFLDIYD-----FMRYIFINTQ------LQKIAKVEKKYYKNLGMT 121
Y+ + + FL +Y+ + +Y+ +N + K KY N+ +
Sbjct: 578 KYTYNKLFFIKKYNNFLYLYEIFKYNWYKYLLLNNKYNLYIIYNNYIKYLYKYNININLY 637
Query: 120 INYNIAVNKELFLANYILIGPN 55
N+ N F+ N+I+ N
Sbjct: 638 FIKNLFYNNNNFIHNHIIYKNN 659
>gi|464683|sp|P33540|RPOP_NEUCR PROBABLE DNA-DIRECTED RNA POLYMERASE >gi|283360|pir||S26984
probable DNA-directed RNA polymerase (EC 2.7.7.6) -
Neurospora crassa mitochondrion plasmid maranhar (SGC3)
Length = 896
Score = 36.4 bits (82), Expect = 0.28
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 765 ELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKKNLNSLK 586
E+ + LKY IF +L + R EIK +EKK ++ N + + KN
Sbjct: 165 EIGKILKYQSIF--ELHHRIGLIQNRVEEIKNYTEKKLVSEF-NKLTKVLDEYKNT---- 217
Query: 585 FIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYY--QEFIKTTINNI 412
+K +E L+ ++ ++ L E S + + +II + Y + +KT INNI
Sbjct: 218 -LKNLEELSGESIIKVGLGFTALLSETSEFYSLEEQIIAKNKSIRYIIPKNKLKTLINNI 276
Query: 411 ILLSTV 394
L+ T+
Sbjct: 277 TLMDTI 282
>gi|1449393|emb|CAA39045| (X55361) putative RNA polymerase [Neurospora crassa]
Length = 896
Score = 36.4 bits (82), Expect = 0.28
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 765 ELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKKNLNSLK 586
E+ + LKY IF +L + R EIK +EKK ++ N + + KN
Sbjct: 165 EIGKILKYQSIF--ELHHRIGLIQNRVEEIKNYTEKKLVSEF-NKLTKVLDEYKNT---- 217
Query: 585 FIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYY--QEFIKTTINNI 412
+K +E L+ ++ ++ L E S + + +II + Y + +KT INNI
Sbjct: 218 -LKNLEELSGESIIKVGLGFTALLSETSEFYSLEEQIIAKNKSIRYIIPKNKLKTLINNI 276
Query: 411 ILLSTV 394
L+ T+
Sbjct: 277 TLMDTI 282
>gi|141190|sp|P23217|YP23_STAAU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION (ORF 188)
>gi|97820|pir||S12393 hypothetical protein (qacA 5'
region) - Staphylococcus aureus plasmid pSK1
>gi|46660|emb|CAA39962| (X56628) ORF188, has identity
with known regulators such as tet regulator in Tn10
[Staphylococcus aureus]
Length = 188
Score = 35.2 bits (79), Expect = 0.63
Identities = 33/138 (23%), Positives = 60/138 (42%), Gaps = 5/138 (3%)
Query: 738 EIFLKDLINECTTHSRRYFEIKRLSEKK-----YHNKIKNNFVRKIFYKKNLNSLKFIKK 574
E+F+K+ N TT EI +LSE YH K K N +I + + KK
Sbjct: 13 ELFIKNGYNATTTG-----EIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKK 67
Query: 573 IEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQEFIKTTINNIILLSTV 394
+ + N + Y+ + +Y + + I ++Y E+ KT
Sbjct: 68 EQIKCKTNREKF-------YLYNELSLTTEYYYPLQNAIIEFYTEYYKT----------- 109
Query: 393 NQIYNCFSEIENYIIEAFFILYQ 325
N I +++EN I+A+ ++++
Sbjct: 110 NSINEKMNKLENKYIDAYHVIFK 132
>gi|4493993|emb|CAB39052| (AL034559) predicted using hexExon; MAL3P7.42 (PFC1055w),
Hypothetical protein, len: 634 aa [Plasmodium
falciparum]
Length = 633
Score = 34.8 bits (78), Expect = 0.83
Identities = 54/236 (22%), Positives = 97/236 (40%), Gaps = 10/236 (4%)
Query: 723 DLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVR-KIFYKKNLNSLKFIKKIEALAEYNL 547
D +N+ R FEI R +K Y I+NN + + FYK + N L K I + N+
Sbjct: 232 DNVNDFYNSLNRMFEIDRDFKKLYDMCIENNILNDEEFYKLHKNQLYEYKNISYCEDMNI 291
Query: 546 NRLKKTXXILYIEHSRMFPNDYEI---------IMNSNITDYYQEFIKTTINNIILLSTV 394
LK+ +YI + EI N + Y +I+ NNI LS
Sbjct: 292 --LKEP---IYISEEQKLSKSVEINNELRKLILCENKELKKLYDYYIE---NNI--LSDS 341
Query: 393 NQIYNCFSEIENYIIEAFFILYQIERILTSIICNDRS*EISLPCGYD*MNMHTDFAEFLD 214
+ F+ +++ F+ + + + N + ++ Y+ N++ D L+
Sbjct: 342 KFWFFLFNNKYSHLF--FYDKNEKDPTSNKHVLNIKEDKLFESLSYNLENLNQDIKGTLE 399
Query: 213 IYDFMRYIFINTQLQKIAKVEKKYYKNLGMTINYNIAVNKELFLANYILIGPNASIQSFL 34
Y+ T +K + YY N + + N++L + NY N S +
Sbjct: 400 KCILKEYLTHKTSNKKNVLFKNNYYFNEENMEGFGVFTNEKL-IKNY-----NNSYNLLI 453
Query: 33 TFYNSF 16
+N++
Sbjct: 454 NKFNNY 459
>gi|1363459|pir||S49394 HsdR1 protein - Mycoplasma pulmonis (SGC3) >gi|496157 (L25415)
restriction-modification enzyme subunit R1 [Mycoplasma
pulmonis]
Length = 986
Score = 33.6 bits (75), Expect = 1.9
Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 801 LFECKSISDISNE-------LSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNK 643
LF K IS N LSE K++++ +K+ N+ + + Y EI L +K+ N+
Sbjct: 807 LFFNKKISKYPNNRLTYEDTLSEIDKHIQL-IKNNYNQGKINQKEY-EIFLLLVQKWKNE 864
Query: 642 IKNNFVRKIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNS 463
IKN F++K K+L+ +FI + + + ++K +++E +Y I N
Sbjct: 865 IKNFFIKK---DKSLDEKEFIDYGKRILKSVFQKVKNQIEAMWLE---KILKEYHGINND 918
Query: 462 NI-TDYYQEFIKTTINNIILLSTVNQIYNCFSEIENYIIEAFFILYQ 325
I D+ + +++I + + E++ II+ I Y+
Sbjct: 919 QIRKDWKKRINDKDLDDIEKSEFIKKWSRRSKEVDKDIIDKLSIEYK 965
>gi|4493896|emb|CAB39005| (AL034558) predicted using hexExon; MAL3P2.18 (PFC0245c),
Hypothetical protein, len: 3934 aa [Plasmodium
falciparum]
Length = 3933
Score = 33.6 bits (75), Expect = 1.9
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 795 ECKSISDISNELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYH----------- 649
EC +S L+ ++ ++ L +I++ + +Y L+E Y
Sbjct: 2820 ECIEKKKLSFSLTLLTEFDDVILIKIIDDLLNYYEKYKSKINLNEFMYFLFNIYLNICTL 2879
Query: 648 -NKIKNNFVRKIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFP-ND--- 484
+I N+F+ IF FIKKI ++ ++ L + IE++ ++ ND
Sbjct: 2880 TKRIINHFIDFIF--------SFIKKITQTSQNIMSSLWFLYILFIIENNHIYVFNDKLQ 2931
Query: 483 -------YEIIMNSNITDYYQEFIKTTINNIILLSTVNQIYNCFSEIENYII 349
I++ ++ YY + +K N L Q +N + I+NY I
Sbjct: 2932 KKIIVEQISILIQISLYSYYSKNVKNNYNIQTPLPNFVQPFNIYYIIQNYFI 2983
>gi|140550|sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF 2136) >gi|81341|pir||A05037
hypothetical protein 2136 - liverwort (Marchantia
polymorpha) chloroplast >gi|11665|emb|CAA28078| (X04465)
ORF2136 [Marchantia polymorpha]
Length = 2136
Score = 33.2 bits (74), Expect = 2.4
Identities = 44/152 (28%), Positives = 66/152 (42%), Gaps = 7/152 (4%)
Query: 774 ISNELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKK--- 604
I N YL+ L+IFLKD N + EIK EKK + IK+ + K
Sbjct: 905 IKNNNLLYLRLLKIFLKDKRNFLLIN-----EIKSFIEKKNNLFIKSQLSNVLLVKNSYK 959
Query: 603 ---NLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQEF- 436
N+ + F+K+ E E LN Y E S + Y + N N+ + Y +F
Sbjct: 960 FFDNIFNFHFLKQKEKNIEIILNNQN------YFEKS-LLKKTY--LKNLNLNNSYSKFS 1010
Query: 435 IKTTINNIILLSTVNQIYNCFSEIENYIIEAFFILYQIE 319
K I ++ + N Y F I I + + Y+I+
Sbjct: 1011 YKIFIFQLLNILNKNN-YKTFQWISELIFYSKNLNYKIQ 1048
>gi|4493986|emb|CAB39045| (AL034559) predicted using hexExon; MAL3P7.34 (PFC1015c),
Hypothetical protein, len: 2341 aa [Plasmodium
falciparum]
Length = 2340
Score = 32.8 bits (73), Expect = 3.2
Identities = 44/181 (24%), Positives = 89/181 (48%), Gaps = 38/181 (20%)
Query: 669 LSEKKYHNKIKNNF----------VRKIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXI 520
L E Y + IK N ++ + + N+ L + K + +N+N +K +
Sbjct: 1194 LLEHIYIDNIKTNHTSEYKDEDITLQNMSLQNNIKELTYNNKNDVFPNFNINNIKNFTLL 1253
Query: 519 LYIEHSRMFPNDYEIIM------------------NSNITD---YYQEFIKTTINNII-- 409
+I + + N Y+I++ N+N+ +Y +IK I N I
Sbjct: 1254 DFIFQIKNYFNYYKILLSDAEKKCIHFLMHVNYKTNNNMYHFNLFYNLYIKDNITNFIHD 1313
Query: 408 --LLSTVNQIYNCFSEIENY-IIEAFFILYQIERILTSIICNDRS*EISLP--CGYD*MN 244
++ ++ I N E + + + FF + + L + +CN+ S ++ + C D MN
Sbjct: 1314 NKVIYYIDYIKNKDLEKQKFHMTHNFFKVAKKVYTLQAWVCNNSSDDLFIDPNCAED-MN 1372
Query: 243 MHTDFAEFLDIYDFMRYIFINTQLQKIAKVEKKYYKNLG 127
+ D ++ + + N K +K + YK+ G
Sbjct: 1373 LPGDHNKYFHKRKYENSLLDNNYSLKKSKKQNISYKDEG 1411
>gi|3764015|emb|CAA15608| (AL008970) predicted using hexExon; MAL3P4.18 (PFC0475c),
Hypothetical protein, len: 482 aa [Plasmodium
falciparum]
Length = 481
Score = 32.8 bits (73), Expect = 3.2
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 645 KIKNNFVRKIFYKKNLNSLKFIKKIEAL----AEYNLNRLKKTXXILYIEHSRMFPNDYE 478
K N+ ++ Y KN+++ IK ++ + + N K ++ + ++ N+
Sbjct: 76 KKDNDIIKSNIYNKNVSNNNLIKDVDDMISINSSSNTTNSIKNVSLINESYKNIYSNN-- 133
Query: 477 IIMNSNITDYYQEFIKTTINNIILLSTVNQIYN 379
++ +N +D++ + I+ NNI L++ NQ+ N
Sbjct: 134 -VIKNNNSDFFNKNIE---NNIDLMNITNQVNN 162
>gi|3660712 (AF063439) period [Plagodis fervidaria]
Length = 353
Score = 32.8 bits (73), Expect = 3.2
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 3/66 (4%)
Query: 106 NIIVYRHSQXXXXXXXXXCNFLKLSIYENISHEIINIQK---FCKIRVHIHLIISAW*RN 276
+ I + H + N L L + NI+HE I ++ C+IR H +LIIS R
Sbjct: 24 SFIEFVHPRDQSTFASQITNGLALPKFGNITHEKIRVESTTMVCRIRRHRNLIISFGTRE 83
Query: 277 FLASIVAYN 303
LA+ + ++
Sbjct: 84 RLAAFMPFH 92
>gi|4049787 (AF063866) ORF MSV218 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 320
Score = 32.8 bits (73), Expect = 3.2
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 11/239 (4%)
Query: 771 SNELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKKNLNS 592
+NELS+Y+ ++E+ ++ + +S E L + N +K+ + + + + N+
Sbjct: 78 NNELSKYINHIEVLYREYYTKLFLNSNELDENHNL----WINYLKSTY-SEYNFNTDFNN 132
Query: 591 LKFIKKIEALAEYNLNRLK---KTXXILYIEH--SRMFPNDYEIIMNSNITDYYQEFIK- 430
+K ++ L +LN K IL+I++ PN+ ++ + I Y E
Sbjct: 133 IK-LQLFNPLKILDLNIPKNDHNKSGILFIKNITYNKKPNNIYLLYSCGIIFYNPEKNNC 191
Query: 429 -TTINNIILLS--TVNQIYNCFSEIENY--IIEAFFILYQIERILTSIICNDRS*EISLP 265
+ +NNII ++ + + NY I A +I+Y+ ++IL + +I P
Sbjct: 192 CSNLNNIIKFKEISIELASILYGKKINYKNICNALYIMYKSKKILK--YNKYKLLKILFP 249
Query: 264 CGYD*MNMHTDFAEFLDIYDFMRYIFINTQLQKIAKVEKKYYKNLGMTINYNIAVNKELF 85
YD D + Y Y F N + K KY + + +NY K
Sbjct: 250 NTYDEYYFKNDIIYNSNEY----YDFHNFDIYNAIKTLNKYNLLIYLKLNY-----KSFD 300
Query: 84 LANYILIGPN 55
+ NY+ I N
Sbjct: 301 ILNYLNIEVN 310
>gi|2581809 (AF003541) endonuclease (R) subunit homolog [Mycoplasma pulmonis]
Length = 986
Score = 32.5 bits (72), Expect = 4.2
Identities = 29/98 (29%), Positives = 54/98 (54%), Gaps = 7/98 (7%)
Query: 801 LFECKSISDISNE-------LSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNK 643
LF K IS N LSE K++++ +K+ N+ + + Y EI L +K+ N+
Sbjct: 807 LFFNKKISKYPNNRLTYEDTLSEIDKHIQL-IKNNYNQGKINQKEY-EIFLLLVQKWKNE 864
Query: 642 IKNNFVRKIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIE 508
IKN F++K K+L+ +FI + + + ++K +++E
Sbjct: 865 IKNFFIKK---DKSLDEKEFIDYGKRILKSVFQKVKNQIEAMWLE 906
>gi|2496193|sp|Q59029|YG35_METJA HYPOTHETICAL PROTEIN MJ1635 >gi|2128985|pir||A64504 hypothetical
protein MJ1635 - Methanococcus jannaschii >gi|1500535
(U67604) M. jannaschii predicted coding region MJ1635
[Methanococcus jannaschii]
Length = 414
Score = 32.5 bits (72), Expect = 4.2
Identities = 25/69 (36%), Positives = 38/69 (54%), Gaps = 3/69 (4%)
Query: 648 NKIKNNFVRKI-FYKKNLNS--LKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYE 478
++IK + RKI F KK L L+ ++KI L E NR+K L I+ SR+FP+
Sbjct: 220 HRIKEVYDRKIDFLKKLLKKFPLRAMRKINRLFERRRNRVKDFLHKLTIQLSRLFPDAIF 279
Query: 477 IIMNSNITDYYQ 442
+ + N Y+
Sbjct: 280 VFEDLNKRRMYK 291
>gi|3769486 (AF074946) DNA polymerase [hemorrhagic enteritis virus]
Length = 1112
Score = 32.5 bits (72), Expect = 4.2
Identities = 37/141 (26%), Positives = 58/141 (40%), Gaps = 5/141 (3%)
Query: 432 KTTINNIILLSTVNQIYNCFSEIENYIIEAFF-----ILYQIERILTSIICNDRS*EISL 268
KT I I + T N Y FS+++N+I F IL+ + T +I + EI
Sbjct: 212 KTEIAKIKSIQTKNSTYFWFSKVKNFISTEFRKLRNNILFALTDYFTKLILTPENREIL- 270
Query: 267 PCGYD*MNMHTDFAEFLDIYDFMRYIFINTQLQKIAKVEKKYYKNLGMTINYNIAVNKEL 88
DFA+ ++ + + I ++ I ++ K I +NI E+
Sbjct: 271 ----------EDFAQTQNL-ESITNINLSEHTNLIMSLKVKPIFIEFYIIGHNIQSFDEI 319
Query: 87 FLANYILIGPNASIQSFLTFYNSFKP 10
LA IL N I T +F P
Sbjct: 320 LLATQILQDENLDITPLFTVERNFMP 345
>gi|3758855|emb|CAB11140| (Z98551) predicted using hexExon; MAL3P6.11 (PFC0760c), Hypothetical
protein, len: 3395 aa [Plasmodium falciparum]
Length = 3394
Score = 32.1 bits (71), Expect = 5.5
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 708 CTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIF--YKKNLNSLKFIKKIEALAEYNLNRLK 535
C + Y +++ + ++ + + N ++I+ +N++ ++K + E N LK
Sbjct: 2145 CDGPNYNYVKVQNATNREDNKNKERNLSQEIYKYINENIDLTSELEKKNDMLENYKNELK 2204
Query: 534 KTXXILY---------------IEHSRMFPNDYEIIMNSNI--TDYYQEFIKTTINNIIL 406
+ +Y ++ S M Y+IIMN+NI D E +K NN
Sbjct: 2205 EKNEEIYKLNNDIDMLSNNCKKLKESIMMMEKYKIIMNNNIQEKDEIIENLKNKYNN--- 2261
Query: 405 LSTVNQIYNCFSEIENYIIEAF 340
++ + N +S ++ I+ F
Sbjct: 2262 --KLDDLINNYSVVDKSI 2281
>gi|586874|sp|P37544|YABC_BACSU HYPOTHETICAL 33.0 KD PROTEIN IN XPAC-ABRB INTERGENIC REGION
>gi|2127032|pir||S66065 hypothetical protein - Bacillus
subtilis >gi|467425|dbj|BAA05271| (D26185) unknown
[Bacillus subtilis] >gi|2632303|emb|CAB11812| (Z99104)
similar to hypothetical proteins [Bacillus subtilis]
Length = 292
Score = 32.1 bits (71), Expect = 5.5
Identities = 25/75 (33%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
Query: 609 KKNLNSLKFIKKIEALAEYNL-NRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQEFI 433
KK L +LK K+ E + Y +RLK+T + D EI + +T Y+EFI
Sbjct: 156 KKELEALK--KRQETIIFYEAPHRLKETLSAM-----AEILGDREIAVTRELTKKYEEFI 208
Query: 432 KTTINNIILLSTVNQI 385
+ TI+ +I + +QI
Sbjct: 209 RGTISEVIGWANEDQI 224
>gi|2688263 (AE001141) B. burgdorferi predicted coding region BB0349 [Borrelia
burgdorferi]
Length = 246
Score = 32.1 bits (71), Expect = 5.5
Identities = 58/224 (25%), Positives = 97/224 (42%), Gaps = 9/224 (4%)
Query: 672 RLSEKKYHNKIKNNFVRKIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMF 493
+L EKK H + ++ S +F K E L + ++ I+ S
Sbjct: 17 KLEEKKTHKALLTSY----------GSYEFFLKNECLFKKIISNQTNNVFIISEAKSNFL 66
Query: 492 PNDYEIIMNSNITDYYQEFIKTTINNIILLSTVNQIYNCFSEIENYIIEAFFILYQIERI 313
N I N N+ + + IK + + LL T+N F I++ +IE ++IE I
Sbjct: 67 IN----ISNHNVWKIFNKNIKVNLKILKLLKTLN-----FINIDDKLIEND---HKIE-I 113
Query: 312 LTSIICNDRS*EISLPCGY-D*MNMH-TDFAEFLDIY---DFMRYIFINTQLQKIAKVEK 148
+ I N + +P + N H F EFL + + +IF++ + K ++K
Sbjct: 114 TLNFISNIKENIKIIPIIFGKTCNKHLLKFCEFLKPFINREENSFIFISKSTNIKK 173
Query: 147 --KYYKNLGMTINYNIAVNKELFLANY--ILIGPNASIQSFLTFYNSFKPGEF 1
K+ +NL + N L L NY I P +I + +T + FK EF
Sbjct: 174 ALKFEENLKHILLEKKLPNLNLILENYKSKKIFPE-NINAIMTISSLFKHFEF 225
>gi|476353|pir||A46350 RNA-directed RNA polymerase (EC 2.7.7.48) - white clover mosaic
virus (strain O)
Length = 1293
Score = 31.7 bits (70), Expect = 7.2
Identities = 20/86 (23%), Positives = 43/86 (49%)
Query: 621 KIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQ 442
+IF+ +NLN K K++A+ + + K ++ ++I S ++DY+
Sbjct: 275 QIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPT-----ERDIYAKIRQLIKTSELSDYHP 329
Query: 441 EFIKTTINNIILLSTVNQIYNCFSEI 364
+ I +N + +S ++ I N +S+I
Sbjct: 330 DEIVHIVNYFVFISKLDSI-NSYSDI 354
>gi|3327942 (AF053771) transcriptional regulator QacR [Staphylococcus aureus]
>gi|3327947 (AF053772) transcriptional regulator QacR
[Staphylococcus aureus]
Length = 188
Score = 31.7 bits (70), Expect = 7.2
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 738 EIFLKDLINECTTHSRRYFEIKRLSEKK-----YHNKIKNNFVRKIFYKKNLNSLKFIKK 574
E+F+K+ N TT EI +LSE YH K K N +I + + KK
Sbjct: 13 ELFIKNGYNATTTG-----EIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKK 67
Query: 573 IEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQEFIKTTINNIILLSTV 394
+ + N + Y+ + +Y + + I ++ E+ KT
Sbjct: 68 EQIKCKTNREKF-------YLYNELSLTTEYYYPLQNAIIEFCTEYYKT----------- 109
Query: 393 NQIYNCFSEIENYIIEAFFILYQ 325
N I +++EN I+A+ ++++
Sbjct: 110 NSINEKMNKLENKYIDAYHVIFK 132
>gi|4098866 (U80927) unknown [Dictyostelium discoideum]
Length = 574
Score = 31.7 bits (70), Expect = 7.2
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 660 KKYHN-KIKNNFVRKIFYKKNLNSLKFIK-KIEALAEYNLNRLKKTXXILYIEHSRMFPN 487
K+ HN K+KN+F+R+ F + + IK K+ E NL + ++ ++S N
Sbjct: 186 KQIHNYKLKNHFIRQQFQNNSTTNQDTIKIKLSHFEERNLLKSVDYSGEMFKQYSNWMTN 245
Query: 486 DYEIIMNSNITD 451
++E I + + D
Sbjct: 246 NWERIKDKMVRD 257
>gi|1022726 (U35635) unknown [Staphylococcus haemolyticus]
Length = 273
Score = 31.7 bits (70), Expect = 7.2
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 747 KYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKKNLNSLK 586
K +E + + NE T +R+ +KR KKY +I + F RK Y+ + LK
Sbjct: 206 KEIEDLNQHINNEKCTKTRKQIRLKRTKIKKYKKQINDYFERKYRYEFQKSILK 259
>gi|139144|sp|P09498|RRPO_WCMVM RNA REPLICATION PROTEIN (147 KD PROTEIN) (ORF 1) [CONTAINS:
RNA-DIRECTED RNA POLYMERASE ; PROBABLE HELICASE]
>gi|77377|pir||S01085 hypothetical protein 1 - white
clover mosaic virus >gi|61318|emb|CAA29904| (X06728)
147K ORF (AA 1-1294) [White clover mosaic virus]
Length = 1294
Score = 31.7 bits (70), Expect = 7.2
Identities = 20/86 (23%), Positives = 43/86 (49%)
Query: 621 KIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQ 442
+IF+ +NLN K K++A+ + + K ++ ++I S ++DY+
Sbjct: 275 QIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPT-----ERDIYAKIRQLIKTSELSDYHP 329
Query: 441 EFIKTTINNIILLSTVNQIYNCFSEI 364
+ I +N + +S ++ I N +S+I
Sbjct: 330 DEIVHIVNYFVFISKLDSI-NSYSDI 354
>gi|139145|sp|P15402|RRPO_WCMVO RNA REPLICATION PROTEIN (147 KD PROTEIN) (ORF 1) [CONTAINS:
RNA-DIRECTED RNA POLYMERASE ; PROBABLE HELICASE]
>gi|61324|emb|CAA34628| (X16636) ORF 1 (AA 1-1294)
[White clover mosaic virus]
Length = 1294
Score = 31.7 bits (70), Expect = 7.2
Identities = 20/86 (23%), Positives = 43/86 (49%)
Query: 621 KIFYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPNDYEIIMNSNITDYYQ 442
+IF+ +NLN K K++A+ + + K ++ ++I S ++DY+
Sbjct: 275 QIFHPRNLNPSKPFPKVKAMQLFTYVKSVKNPT-----ERDIYAKIRQLIKTSELSDYHP 329
Query: 441 EFIKTTINNIILLSTVNQIYNCFSEI 364
+ I +N + +S ++ I N +S+I
Sbjct: 330 DEIVHIVNYFVFISKLDSI-NSYSDI 354
>gi|3334405|sp|O23948|VATE_GOSHI VACUOLAR ATP SYNTHASE SUBUNIT E (V-ATPASE E SUBUNIT) >gi|2267583
(AF009338) vacuolar H+-ATPase subunit E [Gossypium
hirsutum]
Length = 237
Score = 31.7 bits (70), Expect = 7.2
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 786 SISDISNELSEYLKYLEIFLKDLINECTTHSRRYFEIKRL----SEKKYHNKIKNNFVRK 619
S +D+S ++ + ++++ ++ NE + + F I++L +EKK KI+
Sbjct: 2 SDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK---KIRQE---- 54
Query: 618 IFYKKNLNSLKFIKKIEALAEYNLNRLK 535
Y+K ++ KKIE + N +R+K
Sbjct: 55 --YEKKEKQVEIRKKIEYSMQLNASRIK 80
>gi|84210|pir||S10439 DNA-directed RNA polymerase (EC 2.7.7.6) beta' chain - Plasmodium
falciparum (fragment) >gi|9881|emb|CAA36428| (X52177)
RNA polymerase beta-prime subunit (AA 1- 462)
[Plasmodium falciparum]
Length = 462
Score = 31.3 bits (69), Expect = 9.4
Identities = 41/153 (26%), Positives = 72/153 (46%), Gaps = 20/153 (13%)
Query: 756 EYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKK--NLNSLKF 583
++L Y + F ++ + + + F L +KKY N I+ F I YKK N+N L
Sbjct: 140 KFLIYYKYFFSNIKYKQYFYYNKLFSKINLYKKKYKNIIQYLFSHNILYKKLQNINLLTE 199
Query: 582 IKKIEALAEYNLNRLKKTXXILYIEHSRMF------PN----DYEIIMNSNITDYYQEFI 433
+ + L N K I +F PN D I+ + + Y+ +I
Sbjct: 200 LLNNKELLLINNKYYNKKYLYKKINLFNLFILNNIKPNWIFLDLLPILPAGLRPYF--YI 257
Query: 432 KTTINNIILLSTVNQIYNCFSEIEN------YIIEAFFILYQI--ERILTSII 298
N+ ++ST+N+ Y N Y+ F +++I +R+L +I
Sbjct: 258 N---NSTYIISTINENYRLIILKNNKLKYWLYLRNNIFFIFEIIEKRLLQQLI 307
>gi|2507353|sp|P21422|RPOC_PLAFA DNA-DIRECTED RNA POLYMERASE BETA' CHAIN >gi|1171588|emb|CAA64573|
(X95275) rpoC [Plasmodium falciparum]
Length = 575
Score = 31.3 bits (69), Expect = 9.4
Identities = 41/153 (26%), Positives = 72/153 (46%), Gaps = 20/153 (13%)
Query: 756 EYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKIFYKK--NLNSLKF 583
++L Y + F ++ + + + F L +KKY N I+ F I YKK N+N L
Sbjct: 140 KFLIYYKYFFSNIKYKQYFYYNKLFSKINLYKKKYKNIIQYLFSHNILYKKLQNINLLTE 199
Query: 582 IKKIEALAEYNLNRLKKTXXILYIEHSRMF------PN----DYEIIMNSNITDYYQEFI 433
+ + L N K I +F PN D I+ + + Y+ +I
Sbjct: 200 LLNNKELLLINNKYYNKKYLYKKINLFNLFILNNIKPNWIFLDLLPILPAGLRPYF--YI 257
Query: 432 KTTINNIILLSTVNQIYNCFSEIEN------YIIEAFFILYQI--ERILTSII 298
N+ ++ST+N+ Y N Y+ F +++I +R+L +I
Sbjct: 258 N---NSTYIISTINENYRLIILKNNKLKYWLYLRNNIFFIFEIIEKRLLQQLI 307
>gi|3845297 (AE001421) hypothetical protein [Plasmodium falciparum]
Length = 2380
Score = 31.3 bits (69), Expect = 9.4
Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 28/234 (11%)
Query: 768 NELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSE---------------------KKY 652
N +S K IF K + T+S Y +LS+ +
Sbjct: 1500 NNISGKEKNRNIFRKWNSKDLKTNSNNYIATNKLSKTFSGIWLDKKKKKNDKTIERNESA 1559
Query: 651 HNKIKNNFVRKIFY----KKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMFPND 484
NKI+ N + + K+ N IK + +E N K L ++ + N+
Sbjct: 1560 ENKIEKNIIENNYTIDNDKREFNMDNTIKNEKRESENN----NKHMECLQNDNDKNVNNN 1615
Query: 483 YEIIMNSNITDYYQEFIKTTI-NNIILLSTVNQIYNCFSEIENYIIEAFFILYQIERILT 307
++ I N+ + +E + + N+ I+ +N Y F N + E F Y T
Sbjct: 1616 FKFIENNGTNEIKKELYRNDMYNDGIINFDINNEY--FFRNLNNMNECQFFKY------T 1667
Query: 306 SIICNDRS*EISLPCGYD*MNM--HTDFAEFLDIYDFMRYIFINTQLQKIAKVEKKYYKN 133
ND +D +N +TD+ ++ Y F I N I+K+E Y N
Sbjct: 1668 LFDKNDNV--------FDHINNKDNTDYNKYF--YKFENLIIFNYDFTLISKIEDFYQSN 1717
Query: 132 LGMTINYNIAVNKELFLANYIL 67
+ N KE+F Y +
Sbjct: 1718 RYKIFDINKKKKKEIFYHLYYI 1739
>gi|3647346|emb|CAB10570| (Z97348) predicted using hexExon; MAL3P1.7 (PFC0125w), ABC
transporter, len: 1365; Three regions of moderate
similarity to ABC transporters, especially those from
compositionally biased genomes such as Dictyostelium and
P.fal...
Length = 1365
Score = 31.3 bits (69), Expect = 9.4
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
Query: 795 ECKSISDISNELSEYLKYLEIFLKDLINECTTHSRRYFEIKRLSEKKYHNKIKNNFVRKI 616
E I+D N +S Y + +CT K+ Y+N NN +
Sbjct: 602 ETNKINDYHNFISNKQMY-----DNKTKDCTLKK------KKQDNSFYYNTPNNN----V 646
Query: 615 FYKKNLNSLKFIKKIEALAEYNLNRLKKTXXILYIEHSRMF-PNDYEIIMNSNITDYYQE 439
K L+ F K +E N+LKK + ++ F ND+ +I+ + +
Sbjct: 647 EMKNQLDQHSFSK-----SENFQNKLKKKIQEINMQEVYQFIKNDHALIIKYKLDRKFIR 701
Query: 438 FIKTTI-NNIILLSTVNQIYNCFSEIENYIIEAFFILY 328
F+KT NIILL I + E N + + F L+
Sbjct: 702 FLKTNYKKNIILL-----ILKLYKERNNSVSDNFLFLF 734
>gi|731972|sp|P40309|YJJ4_YEAST HYPOTHETICAL 97.1 KD PROTEIN IN BCK1-TOK1 INTERGENIC REGION
>gi|630170|pir||S46584 probable membrane protein YJL094c
- yeast (Saccharomyces cerevisiae)
>gi|521094|emb|CAA54359| (X77087) 12 transmembrane
domains; J0909 ORF [Saccharomyces cerevisiae]
>gi|1008268|emb|CAA89387| (Z49369) ORF YJL094c
[Saccharomyces cerevisiae]
Length = 873
Score = 31.3 bits (69), Expect = 9.4
Identities = 17/42 (40%), Positives = 22/42 (51%)
Query: 186 INTQLQKIAKVEKKYYKNLGMTINYNIAVNKELFLANYILIG 61
INTQL +A V K L IN A++ L L NY+ +G
Sbjct: 463 INTQLNSLADVSKYRIGELTTVINTTEAISPSLKLLNYLSLG 504
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145203456
Number of Sequences: 369800
Number of extensions: 2673283
Number of successful extensions: 6715
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 6682
Number of HSP's gapped (non-prelim): 62
length of query: 293
length of database: 113023754
effective HSP length: 54
effective length of query: 238
effective length of database: 93054554
effective search space: 22146983852
effective search space used: 22146983852
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)